RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy417
(240 letters)
>1is8_A GTP cyclohydrolase I; enzyme-regulatory protein complex,
hydrolase/protein binding complex; HET: PHE; 2.70A
{Rattus norvegicus} SCOP: d.96.1.1 PDB: 1is7_A* 1wpl_A*
1fb1_A
Length = 230
Score = 343 bits (882), Expect = e-121
Identities = 141/195 (72%), Positives = 165/195 (84%)
Query: 45 ELDHQPPTREALLPDMTASYKRLLGALGENPDRQGLLKTPERAAKAMLFFTKGYDQTLEE 104
E LP++ A+Y +L +LGE+P RQGLLKTP RAA AM FFTKGY +T+ +
Sbjct: 36 GRPRSEEDNELNLPNLAAAYSSILRSLGEDPQRQGLLKTPWRAATAMQFFTKGYQETISD 95
Query: 105 VLNDAVFDEDHDEMVVVKDIEMFSMCEHHLVPFYGKVSIGYLPCKKILGLSKLARIVEIY 164
VLNDA+FDEDHDEMV+VKDI+MFSMCEHHLVPF G+V IGYLP K++LGLSKLARIVEIY
Sbjct: 96 VLNDAIFDEDHDEMVIVKDIDMFSMCEHHLVPFVGRVHIGYLPNKQVLGLSKLARIVEIY 155
Query: 165 SRRLQVQERLTKQIAIAVTKAVQPAGVAVVVEGVHMCMVMRGVQKINSKTVTSTMLGQFR 224
SRRLQVQERLTKQIA+A+T+A+QPAGV VV+E HMCMVMRGVQK+NSKTVTSTMLG FR
Sbjct: 156 SRRLQVQERLTKQIAVAITEALQPAGVGVVIEATHMCMVMRGVQKMNSKTVTSTMLGVFR 215
Query: 225 DDPKTREEFLNLVNT 239
+DPKTREEFL L+ +
Sbjct: 216 EDPKTREEFLTLIRS 230
>1wur_A GTP cyclohydrolase I; beta barrel, protein-inhibitor complex,
pteridine tetrahydrobiopterin, structural genomics,
NPPSFA; HET: 8DG; 1.82A {Thermus thermophilus} SCOP:
d.96.1.1 PDB: 1wm9_A* 1wuq_A*
Length = 220
Score = 341 bits (877), Expect = e-121
Identities = 114/196 (58%), Positives = 144/196 (73%)
Query: 43 DLELDHQPPTREALLPDMTASYKRLLGALGENPDRQGLLKTPERAAKAMLFFTKGYDQTL 102
+LE E L + A L +GE+P R+GLLKTPER AKA F T+GY Q L
Sbjct: 21 ELEDTGLTFATEVDLERLQALAAEWLQVIGEDPGREGLLKTPERVAKAWAFLTRGYRQRL 80
Query: 103 EEVLNDAVFDEDHDEMVVVKDIEMFSMCEHHLVPFYGKVSIGYLPCKKILGLSKLARIVE 162
EEV+ AVF + EMVVVK +E +SMCEHHL+PF+GKV IGY+P KILGLSK ARIV+
Sbjct: 81 EEVVGGAVFPAEGSEMVVVKGVEFYSMCEHHLLPFFGKVHIGYIPDGKILGLSKFARIVD 140
Query: 163 IYSRRLQVQERLTKQIAIAVTKAVQPAGVAVVVEGVHMCMVMRGVQKINSKTVTSTMLGQ 222
+++RRLQVQERL QIA A+ + ++P GV VVVEGVH+CM+MRGV+K +S+TVTS MLG
Sbjct: 141 MFARRLQVQERLAVQIAEAIQEVLEPQGVGVVVEGVHLCMMMRGVEKQHSRTVTSAMLGV 200
Query: 223 FRDDPKTREEFLNLVN 238
FR++ KTREEFL+ +
Sbjct: 201 FRENQKTREEFLSHLR 216
>1a8r_A GTP cyclohydrolase I; purine hydrolysis, pterine synthesis; HET:
GTP; 2.10A {Escherichia coli} SCOP: d.96.1.1 PDB:
1n3r_A* 1fbx_A 1gtp_A 1n3s_A* 1n3t_F* 1a9c_A* 4du6_A*
Length = 221
Score = 325 bits (835), Expect = e-114
Identities = 66/217 (30%), Positives = 102/217 (47%), Gaps = 1/217 (0%)
Query: 23 TLVEKKKNSSASHEKCTFHNDLELDHQPPTREALLPDMTASYKRLLGALGENPDRQGLLK 82
+L ++ + L E + ++ L + L++
Sbjct: 2 SLSKEAALVHEALVARGLETPLRPPVHEMDNETRKSLIAGHMTEIMQLLNLDLADDSLME 61
Query: 83 TPERAAKAML-FFTKGYDQTLEEVLNDAVFDEDHDEMVVVKDIEMFSMCEHHLVPFYGKV 141
TP R AK + G D + DEMV V+DI + S CE H V GK
Sbjct: 62 TPHRIAKMYVDEIFSGLDYANFPKITLIENKMKVDEMVTVRDITLTSTCESHFVTIDGKA 121
Query: 142 SIGYLPCKKILGLSKLARIVEIYSRRLQVQERLTKQIAIAVTKAVQPAGVAVVVEGVHMC 201
++ Y+P ++GLSK+ RIV+ +++R QVQERLT+QI IA+ + VAV ++ VH C
Sbjct: 122 TVAYIPKDSVIGLSKINRIVQFFAQRPQVQERLTQQILIALQTLLGTNNVAVSIDAVHYC 181
Query: 202 MVMRGVQKINSKTVTSTMLGQFRDDPKTREEFLNLVN 238
+ RG++ S T T+++ G F+ TR EFL V
Sbjct: 182 VKARGIRDATSATTTTSLGGLFKSSQNTRHEFLRAVR 218
>4f8b_A NADPH-dependent 7-cyano-7-deazaguanine reductase; beta barrel,
protein thioimide complex, pterin binding fold, fold;
HET: GD1 PE4; 2.50A {Bacillus subtilis subsp} PDB:
4fgc_A*
Length = 165
Score = 45.3 bits (107), Expect = 3e-06
Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 3/92 (3%)
Query: 102 LEEVLNDAVFDEDHDEMVVVKDIEMFSMCEHHLVPFYGKVSIGYLPCKKILGLSKLARIV 161
LE N V + D V E S+C P + + I Y+P +K++ L +
Sbjct: 31 LESFPNKHV---NRDYFVKFNCPEFTSLCPKTGQPDFATIYISYIPDEKMVESKSLKLYL 87
Query: 162 EIYSRRLQVQERLTKQIAIAVTKAVQPAGVAV 193
+ E I + + + P + V
Sbjct: 88 FSFRNHGDFHEDCMNIIMNDLIELMDPRYIEV 119
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.0 bits (95), Expect = 2e-04
Identities = 35/252 (13%), Positives = 81/252 (32%), Gaps = 64/252 (25%)
Query: 18 GSGNGTLVEKKKNSSASHE-KCTFHN-----DLELDHQPPTREALLPDMTASYKRLLGAL 71
GSG + + S++ +C +L+ + P E +L + ++
Sbjct: 160 GSGKTWVA---LDVCLSYKVQCKMDFKIFWLNLKNCNSP---ETVLEMLQKLLYQIDPNW 213
Query: 72 GENPDRQGLLKTPERAAKA---MLFFTKGYDQTLEEVLNDAVFDEDHDEMVVVKDIEMFS 128
D +K + +A L +K Y+ L VL + V + F+
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL-LVLLN-VQNAKA--------WNAFN 263
Query: 129 M-C-----------------EHHLVPFYGKVSIGYLPCKKILGLSKLARIVEIYSRRLQV 170
+ C S+ P ++ L L + ++ +
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP-DEVKSL--LLKYLDC-----RP 315
Query: 171 QERLTKQIAIAVTKAVQPAGVAVVVEGVHMCMVMR--GVQKINSKTVTSTM---LGQFRD 225
Q+ L +++ P ++++ E + + + +N +T+ + L +
Sbjct: 316 QD-LPREV-----LTTNPRRLSIIAESIRD-GLATWDNWKHVNCDKLTTIIESSLNVL-E 367
Query: 226 DPKTREEFLNLV 237
+ R+ F L
Sbjct: 368 PAEYRKMFDRLS 379
Score = 40.6 bits (94), Expect = 4e-04
Identities = 37/212 (17%), Positives = 61/212 (28%), Gaps = 61/212 (28%)
Query: 2 KEIVSS---GSTQLISTSNGS-GNGTLVEKKKNSSASHEKCTFHND--LEL-----DHQP 50
+ ++ L++T + + S H T D L D +P
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 51 ---PTREALL--PDMTASYKRLLGA-LGENPDRQGLLKTPERAAKAMLFFTKGYDQTLEE 104
P RE L P + ++ + + K + + +L
Sbjct: 316 QDLP-REVLTTNPRRLS----IIAESIRDGLATWDNWKHVNCDKLTTII-----ESSLN- 364
Query: 105 VLND----------AVFDED-----------------HDEMVVVKDIEMFSMCEHHLVPF 137
VL +VF D MVVV + +S+ E P
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ--PK 422
Query: 138 YGKVSI--GYLP-CKKILGLSKL-ARIVEIYS 165
+SI YL K+ L IV+ Y+
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHYN 454
Score = 39.8 bits (92), Expect = 6e-04
Identities = 27/228 (11%), Positives = 67/228 (29%), Gaps = 60/228 (26%)
Query: 41 HNDLELDHQPPTREALLPDMTASYKR----------LLGALGENPDRQGLLKTPERAAKA 90
H D E + +L ++ L + ++ + + +
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSIL-SKEEIDHIIMSKDAVSGT 64
Query: 91 MLFF-------TKGYDQTLEEVLNDAVFDEDHDEMVVVKDIEMFSMCEHHLVPFYGKVSI 143
+ F + + +EEVL ++ + M + P ++
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEEVLRI-----NYKFL-------MSPIKTEQRQP--SMMTR 110
Query: 144 GYLPCKKILGLSKLARIVEIYSRRLQVQERLTKQIAIAVTKAVQPAGVAVVVEGVHMCMV 203
Y+ + +L +++++ + + ++ A+ + ++PA V+++G
Sbjct: 111 MYIEQR-----DRLYNDNQVFAKYNVSRLQPYLKLRQALLE-LRPAK-NVLIDG------ 157
Query: 204 MRGVQK-------INSKTVTSTM--------LGQFRDDPKTREEFLNL 236
+ G K S V M L E L
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 0.001
Identities = 42/240 (17%), Positives = 78/240 (32%), Gaps = 99/240 (41%)
Query: 5 VSSGSTQLISTSNGSGNGTLVEKKKNSSASHEKCTFHNDLELDHQPPTREALLPDMTASY 64
V G+ QL++ G GN + F + EL R+ + +Y
Sbjct: 149 VGEGNAQLVAIFGGQGNT-------------DDY-F--E-EL------RD-----LYQTY 180
Query: 65 KRLLGALGENPDR--QGLLKTPERAAKAMLFFTKGYDQTLEEVLNDAVFDEDHDEMVVVK 122
L+G L + L++T A K FT+G + + E L + D D ++
Sbjct: 181 HVLVGDLIKFSAETLSELIRTTLDAEK---VFTQGLN--ILEWLENPSNTPDKDYLL--- 232
Query: 123 DIEMFSMCEHHLVPFYGKVSIGYLPCKKILGLSKLARIVEIYSRRL-----QVQERLTKQ 177
+P +S P ++G+ +LA V + ++ L +++ L
Sbjct: 233 -----------SIP----IS---CP---LIGVIQLAHYV-VTAKLLGFTPGELRSYL--- 267
Query: 178 IAIAVTKAVQPAGVAVVVEGVHMCMVMRGVQKINSKTVTSTMLGQFRDDPKTREEFLNLV 237
G +G+ VT+ + + + E F V
Sbjct: 268 -----------KGATGHSQGL----------------VTAVAIAE----TDSWESFFVSV 296
Score = 31.2 bits (70), Expect = 0.33
Identities = 20/102 (19%), Positives = 35/102 (34%), Gaps = 31/102 (30%)
Query: 120 VVKDIEMFSMCEHHLVPFYGKVSIGYL----PCKKIL--GLSKLARIVEIYSRRL----- 168
+D+ ++ ++H YG SI + P + G K RI E YS +
Sbjct: 1641 AAQDV--WNRADNHFKDTYG-FSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIV 1697
Query: 169 -----------QVQERLTKQI------AIAVTKAVQPAGVAV 193
++ E T ++ T+ QPA +
Sbjct: 1698 DGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLM 1739
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.0 bits (64), Expect = 1.2
Identities = 11/73 (15%), Positives = 25/73 (34%), Gaps = 14/73 (19%)
Query: 53 REALLPDMTASYKRLLGALGENPDRQGLLKTPERAAKAMLFFTKGYDQTLEEV-----LN 107
RE ++ L L + E+A K + + + + +E+ +
Sbjct: 91 RE--------EQRKRLQELDAASKVM-EQEWREKAKKDLEEWNQRQSEQVEKNKINNRIA 141
Query: 108 DAVFDEDHDEMVV 120
D F + D ++
Sbjct: 142 DKAFYQQPDADII 154
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.371
Gapped
Lambda K H
0.267 0.0587 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,653,341
Number of extensions: 224235
Number of successful extensions: 445
Number of sequences better than 10.0: 1
Number of HSP's gapped: 444
Number of HSP's successfully gapped: 10
Length of query: 240
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 149
Effective length of database: 4,160,982
Effective search space: 619986318
Effective search space used: 619986318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.7 bits)