RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy417
         (240 letters)



>d1wpla_ d.96.1.1 (A:) GTP cyclohydrolase I {Rat (Rattus norvegicus)
           [TaxId: 10116]}
          Length = 194

 Score =  226 bits (577), Expect = 5e-76
 Identities = 141/186 (75%), Positives = 165/186 (88%)

Query: 54  EALLPDMTASYKRLLGALGENPDRQGLLKTPERAAKAMLFFTKGYDQTLEEVLNDAVFDE 113
           E  LP++ A+Y  +L +LGE+P RQGLLKTP RAA AM FFTKGY +T+ +VLNDA+FDE
Sbjct: 9   ELNLPNLAAAYSSILRSLGEDPQRQGLLKTPWRAATAMQFFTKGYQETISDVLNDAIFDE 68

Query: 114 DHDEMVVVKDIEMFSMCEHHLVPFYGKVSIGYLPCKKILGLSKLARIVEIYSRRLQVQER 173
           DHDEMV+VKDI+MFSMCEHHLVPF G+V IGYLP K++LGLSKLARIVEIYSRRLQVQER
Sbjct: 69  DHDEMVIVKDIDMFSMCEHHLVPFVGRVHIGYLPNKQVLGLSKLARIVEIYSRRLQVQER 128

Query: 174 LTKQIAIAVTKAVQPAGVAVVVEGVHMCMVMRGVQKINSKTVTSTMLGQFRDDPKTREEF 233
           LTKQIA+A+T+A+QPAGV VV+E  HMCMVMRGVQK+NSKTVTSTMLG FR+DPKTREEF
Sbjct: 129 LTKQIAVAITEALQPAGVGVVIEATHMCMVMRGVQKMNSKTVTSTMLGVFREDPKTREEF 188

Query: 234 LNLVNT 239
           L L+ +
Sbjct: 189 LTLIRS 194


>d1wura1 d.96.1.1 (A:32-216) GTP cyclohydrolase I {Thermus
           thermophilus [TaxId: 274]}
          Length = 185

 Score =  205 bits (524), Expect = 3e-68
 Identities = 110/178 (61%), Positives = 139/178 (78%)

Query: 60  MTASYKRLLGALGENPDRQGLLKTPERAAKAMLFFTKGYDQTLEEVLNDAVFDEDHDEMV 119
           + A     L  +GE+P R+GLLKTPER AKA  F T+GY Q LEEV+  AVF  +  EMV
Sbjct: 7   LQALAAEWLQVIGEDPGREGLLKTPERVAKAWAFLTRGYRQRLEEVVGGAVFPAEGSEMV 66

Query: 120 VVKDIEMFSMCEHHLVPFYGKVSIGYLPCKKILGLSKLARIVEIYSRRLQVQERLTKQIA 179
           VVK +E +SMCEHHL+PF+GKV IGY+P  KILGLSK ARIV++++RRLQVQERL  QIA
Sbjct: 67  VVKGVEFYSMCEHHLLPFFGKVHIGYIPDGKILGLSKFARIVDMFARRLQVQERLAVQIA 126

Query: 180 IAVTKAVQPAGVAVVVEGVHMCMVMRGVQKINSKTVTSTMLGQFRDDPKTREEFLNLV 237
            A+ + ++P GV VVVEGVH+CM+MRGV+K +S+TVTS MLG FR++ KTREEFL+ +
Sbjct: 127 EAIQEVLEPQGVGVVVEGVHLCMMMRGVEKQHSRTVTSAMLGVFRENQKTREEFLSHL 184


>d1a8ra_ d.96.1.1 (A:) GTP cyclohydrolase I {Escherichia coli
           [TaxId: 562]}
          Length = 221

 Score =  179 bits (456), Expect = 2e-57
 Identities = 65/195 (33%), Positives = 97/195 (49%), Gaps = 1/195 (0%)

Query: 44  LELDHQPPTREALLPDMTASYKRLLGALGENPDRQGLLKTPERAAKAMLFF-TKGYDQTL 102
           L         E     +      ++  L  +     L++TP R AK  +     G D   
Sbjct: 23  LRPPVHEMDNETRKSLIAGHMTEIMQLLNLDLADDSLMETPHRIAKMYVDEIFSGLDYAN 82

Query: 103 EEVLNDAVFDEDHDEMVVVKDIEMFSMCEHHLVPFYGKVSIGYLPCKKILGLSKLARIVE 162
              +         DEMV V+DI + S CE H V   GK ++ Y+P   ++GLSK+ RIV+
Sbjct: 83  FPKITLIENKMKVDEMVTVRDITLTSTCESHFVTIDGKATVAYIPKDSVIGLSKINRIVQ 142

Query: 163 IYSRRLQVQERLTKQIAIAVTKAVQPAGVAVVVEGVHMCMVMRGVQKINSKTVTSTMLGQ 222
            +++R QVQERLT+QI IA+   +    VAV ++ VH C+  RG++   S T T+++ G 
Sbjct: 143 FFAQRPQVQERLTQQILIALQTLLGTNNVAVSIDAVHYCVKARGIRDATSATTTTSLGGL 202

Query: 223 FRDDPKTREEFLNLV 237
           F+    TR EFL  V
Sbjct: 203 FKSSQNTRHEFLRAV 217


>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh
           {Llama (Lama glama) [TaxId: 9844]}
          Length = 135

 Score = 25.0 bits (54), Expect = 5.7
 Identities = 8/14 (57%), Positives = 9/14 (64%), Gaps = 1/14 (7%)

Query: 5   VSSGSTQ-LISTSN 17
           VSS S Q LIS  +
Sbjct: 115 VSSQSEQKLISEED 128


>d2fp1a1 a.130.1.4 (A:35-199) Secreted chorismate mutase
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 165

 Score = 24.8 bits (54), Expect = 6.7
 Identities = 12/93 (12%), Positives = 32/93 (34%), Gaps = 19/93 (20%)

Query: 153 GLSKLARIVEIYSRRLQVQERLTKQIAIAVTKA----VQPAGVAVVVEGVHMCMVMRG-- 206
           G S+LA +V+  + RL     +   +A    +A         V   +  +      +   
Sbjct: 1   GTSQLAELVDAAAERL----EVADPVAAFKWRAQLPIEDSGRVEQQLAKLGEDARSQHID 56

Query: 207 ---VQKI------NSKTVTSTMLGQFRDDPKTR 230
              V ++       ++ +  +    ++ +P + 
Sbjct: 57  PDYVTRVFDDQIRATEAIEYSRFSDWKLNPASA 89


>d1oqja_ d.217.1.1 (A:) Glucocorticoid modulatory element binding
          protein-1 (Gmeb1) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 90

 Score = 24.0 bits (52), Expect = 6.9
 Identities = 8/26 (30%), Positives = 10/26 (38%)

Query: 18 GSGNGTLVEKKKNSSASHEKCTFHND 43
          G     L+ KK      + KC   ND
Sbjct: 11 GESKAILLWKKFVCPGINVKCVKFND 36


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.132    0.371 

Gapped
Lambda     K      H
   0.267   0.0703    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 856,577
Number of extensions: 39402
Number of successful extensions: 98
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 9
Length of query: 240
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 157
Effective length of database: 1,268,006
Effective search space: 199076942
Effective search space used: 199076942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.5 bits)