BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4171
(309 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CVU|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Ds Dna
With A T-T (6-4) Photolesion
pdb|3CVY|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Repaired
Ds Dna
pdb|2WB2|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Double
Stranded Dna Containing A T(6-4)c Photolesion
pdb|3CVV|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Ds Dna
With A T-T (6-4) Photolesion And F0 Cofactor
pdb|2WQ6|A Chain A, Structure Of The 6-4 Photolyase Of D. Melanogaster In
Complex With The Non-Natural N4-Methyl T(Dewar)c Lesion
pdb|2WQ7|A Chain A, Structure Of The 6-4 Photolyase Of D. Melanogaster In
Complex With The Non-Natural N4-Methyl T(6-4)c Lesion
Length = 543
Score = 311 bits (798), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 153/310 (49%), Positives = 203/310 (65%), Gaps = 8/310 (2%)
Query: 5 IEKKLTLSLPSSRRIIEKNGGKTPLTYHQFQSIVAKMDSPSPAEAPVTPLLVRQATTPLR 64
+E + ++ + +I KN GK P+TY +F IV ++ P P ++ TP +
Sbjct: 156 VETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPKVLGVPEK---LKNMPTPPK 212
Query: 65 DDHDEK----YGVPTLEELGFDIEGLLPPTWKGGETEAMRRLERHLERKAWVASFGRPKM 120
D+ ++K Y PT+++L E L P + GGETEA+RR+E L+ + WVA F +P
Sbjct: 213 DEVEQKDSAAYDCPTMKQLVKRPEELGPNKFPGGETEALRRMEESLKDEIWVARFEKPNT 272
Query: 121 TPQSLLASQTGLSPFLRFGCLSTRLFYHDLNKLYKRI-KKAPPPLSLHGQLLWREFFYCA 179
P SL S T LSP+L+FGCLS RLF L ++ KR K + PP+SL GQL+WREF+Y
Sbjct: 273 APNSLEPSTTVLSPYLKFGCLSARLFNQKLKEIIKRQPKHSQPPVSLIGQLMWREFYYTV 332
Query: 180 ATRNPNFDRMLGNPICVQIPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARH 239
A PNFDRMLGN C+QIPW + + L W + +TG+P+IDAIM QLR+EGWIHHLARH
Sbjct: 333 AAAEPNFDRMLGNVYCMQIPWQEHPDHLEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARH 392
Query: 240 AVACFLTRGDLWVSWEEGMKIFDELLLDADWSVNAGMWMWLSCXXXXXXXXHCYCPVKFG 299
AVACFLTRGDLW+SWEEG ++F++LLLD DW++NAG WMWLS Y PV FG
Sbjct: 393 AVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFHQYFRVYSPVAFG 452
Query: 300 RKADPNGDFI 309
+K DP G +I
Sbjct: 453 KKTDPQGHYI 462
>pdb|3CVW|A Chain A, Drosophila Melanogaster (6-4) Photolyase H365n Mutant
Bound To Ds Dna With A T-T (6-4) Photolesion And
Cofactor F0
Length = 543
Score = 309 bits (791), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 152/310 (49%), Positives = 203/310 (65%), Gaps = 8/310 (2%)
Query: 5 IEKKLTLSLPSSRRIIEKNGGKTPLTYHQFQSIVAKMDSPSPAEAPVTPLLVRQATTPLR 64
+E + ++ + +I KN GK P+TY +F IV ++ P P ++ TP +
Sbjct: 156 VETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPKVLGVPEK---LKNMPTPPK 212
Query: 65 DDHDEK----YGVPTLEELGFDIEGLLPPTWKGGETEAMRRLERHLERKAWVASFGRPKM 120
D+ ++K Y PT+++L E L P + GGETEA+RR+E L+ + WVA F +P
Sbjct: 213 DEVEQKDSAAYDCPTMKQLVKRPEELGPNKFPGGETEALRRMEESLKDEIWVARFEKPNT 272
Query: 121 TPQSLLASQTGLSPFLRFGCLSTRLFYHDLNKLYKRI-KKAPPPLSLHGQLLWREFFYCA 179
P SL S T LSP+L+FGCLS RLF L ++ KR K + PP+SL GQL+WREF+Y
Sbjct: 273 APNSLEPSTTVLSPYLKFGCLSARLFNQKLKEIIKRQPKHSQPPVSLIGQLMWREFYYTV 332
Query: 180 ATRNPNFDRMLGNPICVQIPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARH 239
A PNFDRMLGN C+QIPW + + L W + +TG+P+IDAIM QLR+EGWIH+LARH
Sbjct: 333 AAAEPNFDRMLGNVYCMQIPWQEHPDHLEAWTHGRTGYPFIDAIMRQLRQEGWIHNLARH 392
Query: 240 AVACFLTRGDLWVSWEEGMKIFDELLLDADWSVNAGMWMWLSCXXXXXXXXHCYCPVKFG 299
AVACFLTRGDLW+SWEEG ++F++LLLD DW++NAG WMWLS Y PV FG
Sbjct: 393 AVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFHQYFRVYSPVAFG 452
Query: 300 RKADPNGDFI 309
+K DP G +I
Sbjct: 453 KKTDPQGHYI 462
>pdb|3CVX|A Chain A, Drosophila Melanogaster (6-4) Photolyase H369m Mutant
Bound To Ds Dna With A T-T (6-4) Photolesion
Length = 543
Score = 308 bits (788), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 152/310 (49%), Positives = 202/310 (65%), Gaps = 8/310 (2%)
Query: 5 IEKKLTLSLPSSRRIIEKNGGKTPLTYHQFQSIVAKMDSPSPAEAPVTPLLVRQATTPLR 64
+E + ++ + +I KN GK P+TY +F IV ++ P P ++ TP +
Sbjct: 156 VETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPKVLGVPEK---LKNMPTPPK 212
Query: 65 DDHDEK----YGVPTLEELGFDIEGLLPPTWKGGETEAMRRLERHLERKAWVASFGRPKM 120
D+ ++K Y PT+++L E L P + GGETEA+RR+E L+ + WVA F +P
Sbjct: 213 DEVEQKDSAAYDCPTMKQLVKRPEELGPNKFPGGETEALRRMEESLKDEIWVARFEKPNT 272
Query: 121 TPQSLLASQTGLSPFLRFGCLSTRLFYHDLNKLYKRI-KKAPPPLSLHGQLLWREFFYCA 179
P SL S T LSP+L+FGCLS RLF L ++ KR K + PP+SL GQL+WREF+Y
Sbjct: 273 APNSLEPSTTVLSPYLKFGCLSARLFNQKLKEIIKRQPKHSQPPVSLIGQLMWREFYYTV 332
Query: 180 ATRNPNFDRMLGNPICVQIPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARH 239
A PNFDRMLGN C+QIPW + + L W + +TG+P+IDAIM QLR+EGWIHHLAR
Sbjct: 333 AAAEPNFDRMLGNVYCMQIPWQEHPDHLEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARM 392
Query: 240 AVACFLTRGDLWVSWEEGMKIFDELLLDADWSVNAGMWMWLSCXXXXXXXXHCYCPVKFG 299
AVACFLTRGDLW+SWEEG ++F++LLLD DW++NAG WMWLS Y PV FG
Sbjct: 393 AVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFHQYFRVYSPVAFG 452
Query: 300 RKADPNGDFI 309
+K DP G +I
Sbjct: 453 KKTDPQGHYI 462
>pdb|3FY4|A Chain A, (6-4) Photolyase Crystal Structure
pdb|3FY4|B Chain B, (6-4) Photolyase Crystal Structure
pdb|3FY4|C Chain C, (6-4) Photolyase Crystal Structure
Length = 537
Score = 294 bits (752), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 146/295 (49%), Positives = 198/295 (67%), Gaps = 9/295 (3%)
Query: 19 IIEKNGGKTPLTYHQFQSIVAKMDSPSPAEAPVTPLLVRQATTPLRDDHDEKYG-VPTLE 77
IIEKNGGK PL+Y F + + PS A++ + ++ + P+ D + VP+LE
Sbjct: 149 IIEKNGGKPPLSYQSFLKVAGE---PSCAKSEL--VMSYSSLPPIGDIGNLGISEVPSLE 203
Query: 78 ELGF-DIEGLLPPTWKGGETEAMRRLERHLERKAWVASFGRPKMTPQSLLA-SQTGLSPF 135
ELG+ D E ++GGE+EA++RL + + KAWVA+F +PK P + L + T +SP+
Sbjct: 204 ELGYKDDEQADWTPFRGGESEALKRLTKSISDKAWVANFEKPKGDPSAFLKPATTVMSPY 263
Query: 136 LRFGCLSTRLFYHDLNKLYKRIKK-APPPLSLHGQLLWREFFYCAATRNPNFDRMLGNPI 194
L+FGCLS+R FY L +YK +KK PP+SL GQLLWREFFY A PNFD+M GN I
Sbjct: 264 LKFGCLSSRYFYQCLQNIYKDVKKHTSPPVSLLGQLLWREFFYTTAFGTPNFDKMKGNRI 323
Query: 195 CVQIPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWVSW 254
C QIPW+ + LA W + +TG+PWIDAIM QL + GW+HHLARH VACFLTRGDL++ W
Sbjct: 324 CKQIPWNEDHAMLAAWRDGKTGYPWIDAIMVQLLKWGWMHHLARHCVACFLTRGDLFIHW 383
Query: 255 EEGMKIFDELLLDADWSVNAGMWMWLSCXXXXXXXXHCYCPVKFGRKADPNGDFI 309
E+G +F+ LL+D+DW++N G WMWLSC Y P+ FG+K DP+G +I
Sbjct: 384 EQGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQFNRIYSPISFGKKYDPDGKYI 438
>pdb|4GU5|A Chain A, Structure Of Full-Length Drosophila Cryptochrome
pdb|4GU5|B Chain B, Structure Of Full-Length Drosophila Cryptochrome
Length = 539
Score = 202 bits (515), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 126/332 (37%), Positives = 168/332 (50%), Gaps = 40/332 (12%)
Query: 7 KKLTLSLPSSRRIIEKNGGKTPLTYHQFQSIVAKMDSPSPAEAPV--------------- 51
+K++ +L + +IE NGG PLTY F V + P A
Sbjct: 134 EKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQIIGLPPRPTADARLEDATFVELDPEFC 193
Query: 52 -TPLLVRQATTPLRDDHDEKYGVPTLEELGFDIEGLLPPTWKGGETEAMRRLERHL--ER 108
+ L Q TP +H YG + +GF L W+GGET+A+ L+ L E+
Sbjct: 194 RSLKLFEQLPTP---EHFNVYG----DNMGF----LAKINWRGGETQALLLLDERLKVEQ 242
Query: 109 KAWVASFGRPKMTPQSLLASQTGLSPFLRFGCLSTRLFYHDLNKLYKRIK--------KA 160
A+ F P ++ S +S LRFGCLS R FY ++ L+K ++ +
Sbjct: 243 HAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQLRACVRGVQM 302
Query: 161 PPPLSLHGQLLWREFFYCAATRNPNFDRMLGNPICVQIPW-DVNMEALAKWANAQTGFPW 219
+ GQL+WRE+FY + NPN+DRM GN IC+ IPW N L W QTGFP
Sbjct: 303 TGGAHITGQLIWREYFYTMSVNNPNYDRMEGNDICLSIPWAKPNENLLQSWRLGQTGFPL 362
Query: 220 IDAIMTQLREEGWIHHLARHAVACFLTRGDLWVSWEEGMKIFDELLLDADWSVNAGMWMW 279
ID M QL EGW+HH R+ VA FLTRG LW SWE G++ F + LLDADWSV AG WMW
Sbjct: 363 IDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHFLKYLLDADWSVCAGNWMW 422
Query: 280 LSCXXXXXXXXHCY--CPVKFGRKADPNGDFI 309
+S CPV ++ DP+G +I
Sbjct: 423 VSSSAFERLLDSSLVTCPVALAKRLDPDGTYI 454
>pdb|1OWL|A Chain A, Structure Of Apophotolyase From Anacystis Nidulans
pdb|1OWM|A Chain A, Data1:dna Photolyase RECEIVED X-Rays Dose 1.2 Exp15
PhotonsMM2
pdb|1OWN|A Chain A, Data3:dna Photolyase RECEIVED X-Rays Dose 4.8 Exp15
PhotonsMM2
pdb|1OWO|A Chain A, Data4:photoreduced Dna Photolyase RECEIVED X-Rays Dose
1.2 Exp15 PhotonsMM2
pdb|1OWP|A Chain A, Data6:photoreduced Dna Pholyase RECEIVED X-Rays Dose 4.8
Exp15 PhotonsMM2
pdb|1QNF|A Chain A, Structure Of Photolyase
Length = 484
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/241 (33%), Positives = 116/241 (48%), Gaps = 12/241 (4%)
Query: 73 VPTLEELGFDIEGLLPPTWKGGETEAMRRLERHLERKAWVASFGRPKMTPQSLLASQTGL 132
+PTL++LGFD +G P + GET A+ RL+ +R +A + + P A +GL
Sbjct: 190 LPTLKQLGFDWDGGFPV--EPGETAAIARLQEFCDRA--IADYDPQRNFPAE--AGTSGL 243
Query: 133 SPFLRFGCLSTR--LFYHDLNKLYKRIKKAPPPLSL-HGQLLWREFFYCAATRNPNFDRM 189
SP L+FG + R R +A + + +L WREF+ A P+
Sbjct: 244 SPALKFGAIGIRQAWQAASAAHALSRSDEARNSIRVWQQELAWREFYQHALYHFPSLADG 303
Query: 190 LGNPICVQIPWDVNMEAL-AKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRG 248
+ Q PW+ N EAL W AQTG+P +DA M QL E GW+H+ R VA FLT+
Sbjct: 304 PYRSLWQQFPWE-NREALFTAWTQAQTGYPIVDAAMRQLTETGWMHNRCRMIVASFLTK- 361
Query: 249 DLWVSWEEGMKIFDELLLDADWSVNAGMWMWLSCXXXXXXXXHCYCPVKFGRKADPNGDF 308
DL + W G + F + L+D D + N G W W + + P +K D +
Sbjct: 362 DLIIDWRRGEQFFMQHLVDGDLAANNGGWQWSASSGMDPKPLRIFNPASQAKKFDATATY 421
Query: 309 I 309
I
Sbjct: 422 I 422
>pdb|1TEZ|A Chain A, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
pdb|1TEZ|B Chain B, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
pdb|1TEZ|C Chain C, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
pdb|1TEZ|D Chain D, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
Length = 474
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/241 (33%), Positives = 116/241 (48%), Gaps = 12/241 (4%)
Query: 73 VPTLEELGFDIEGLLPPTWKGGETEAMRRLERHLERKAWVASFGRPKMTPQSLLASQTGL 132
+PTL++LGFD +G P + GET A+ RL+ +R +A + + P A +GL
Sbjct: 189 LPTLKQLGFDWDGGFPV--EPGETAAIARLQEFCDRA--IADYDPQRNFPAE--AGTSGL 242
Query: 133 SPFLRFGCLSTR--LFYHDLNKLYKRIKKAPPPLSL-HGQLLWREFFYCAATRNPNFDRM 189
SP L+FG + R R +A + + +L WREF+ A P+
Sbjct: 243 SPALKFGAIGIRQAWQAASAAHALSRSDEARNSIRVWQQELAWREFYQHALYHFPSLADG 302
Query: 190 LGNPICVQIPWDVNMEAL-AKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRG 248
+ Q PW+ N EAL W AQTG+P +DA M QL E GW+H+ R VA FLT+
Sbjct: 303 PYRSLWQQFPWE-NREALFTAWTQAQTGYPIVDAAMRQLTETGWMHNRCRMIVASFLTK- 360
Query: 249 DLWVSWEEGMKIFDELLLDADWSVNAGMWMWLSCXXXXXXXXHCYCPVKFGRKADPNGDF 308
DL + W G + F + L+D D + N G W W + + P +K D +
Sbjct: 361 DLIIDWRRGEQFFMQHLVDGDLAANNGGWQWSASSGMDPKPLRIFNPASQAKKFDATATY 420
Query: 309 I 309
I
Sbjct: 421 I 421
>pdb|2J4D|A Chain A, Cryptochrome 3 From Arabidopsis Thaliana
pdb|2J4D|B Chain B, Cryptochrome 3 From Arabidopsis Thaliana
Length = 525
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/286 (28%), Positives = 131/286 (45%), Gaps = 16/286 (5%)
Query: 28 PLTYHQF-QSIVAKMDSPSPAEAPVTPLLVRQATTPLRDDHDEKYGVPTLEELGFDIEGL 86
P Y QF +S+ AK S P++ TP DD + VPTLE+LG + + +
Sbjct: 191 PDVYTQFRKSVEAKCSIRSSTRIPLS-----LGPTPSVDDWGD---VPTLEKLGVEPQEV 242
Query: 87 LPPT-WKGGETEAMRRLERHLERKAWVASFGRPKMTPQSLLA--SQTGLSPFLRFGCLST 143
+ GGE+ + R+ + +K + + K T +L T SP+L FGC+S
Sbjct: 243 TRGMRFVGGESAGVGRVFEYFWKKDLLKVY---KETRNGMLGPDYSTKFSPWLAFGCISP 299
Query: 144 RLFYHDLNKLYKRIKKAPPPLSLHGQLLWREFFYCAATRNPNFDRMLGNPICVQIPWDVN 203
R Y ++ + K + +L+WR++F + + N LG P VQ W +
Sbjct: 300 RFIYEEVQRYEKERVANNSTYWVLFELIWRDYFRFLSIKCGNSLFHLGGPRNVQGKWSQD 359
Query: 204 MEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWVSWEEGMKIFDE 263
+ W +A+TG+P IDA M +L G++ + R V FL R D+ + W G + F+
Sbjct: 360 QKLFESWRDAKTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVR-DMGLDWRMGAEWFET 418
Query: 264 LLLDADWSVNAGMWMWLSCXXXXXXXXHCYCPVKFGRKADPNGDFI 309
LLD D N G W + + + K + DP G+++
Sbjct: 419 CLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDPEGEYV 464
>pdb|2IJG|X Chain X, Crystal Structure Of Cryptochrome 3 From Arabidopsis
Thaliana
pdb|2VTB|A Chain A, Structure Of Cryptochrome 3 - Dna Complex
pdb|2VTB|C Chain C, Structure Of Cryptochrome 3 - Dna Complex
pdb|2VTB|D Chain D, Structure Of Cryptochrome 3 - Dna Complex
pdb|2VTB|E Chain E, Structure Of Cryptochrome 3 - Dna Complex
pdb|2VTB|F Chain F, Structure Of Cryptochrome 3 - Dna Complex
Length = 526
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/286 (28%), Positives = 131/286 (45%), Gaps = 16/286 (5%)
Query: 28 PLTYHQF-QSIVAKMDSPSPAEAPVTPLLVRQATTPLRDDHDEKYGVPTLEELGFDIEGL 86
P Y QF +S+ AK S P++ TP DD + VPTLE+LG + + +
Sbjct: 192 PDVYTQFRKSVEAKCSIRSSTRIPLS-----LGPTPSVDDWGD---VPTLEKLGVEPQEV 243
Query: 87 LPPT-WKGGETEAMRRLERHLERKAWVASFGRPKMTPQSLLA--SQTGLSPFLRFGCLST 143
+ GGE+ + R+ + +K + + K T +L T SP+L FGC+S
Sbjct: 244 TRGMRFVGGESAGVGRVFEYFWKKDLLKVY---KETRNGMLGPDYSTKFSPWLAFGCISP 300
Query: 144 RLFYHDLNKLYKRIKKAPPPLSLHGQLLWREFFYCAATRNPNFDRMLGNPICVQIPWDVN 203
R Y ++ + K + +L+WR++F + + N LG P VQ W +
Sbjct: 301 RFIYEEVQRYEKERVANNSTYWVLFELIWRDYFRFLSIKCGNSLFHLGGPRNVQGKWSQD 360
Query: 204 MEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWVSWEEGMKIFDE 263
+ W +A+TG+P IDA M +L G++ + R V FL R D+ + W G + F+
Sbjct: 361 QKLFESWRDAKTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVR-DMGLDWRMGAEWFET 419
Query: 264 LLLDADWSVNAGMWMWLSCXXXXXXXXHCYCPVKFGRKADPNGDFI 309
LLD D N G W + + + K + DP G+++
Sbjct: 420 CLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDPEGEYV 465
>pdb|2VTB|B Chain B, Structure Of Cryptochrome 3 - Dna Complex
Length = 525
Score = 103 bits (258), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 81/286 (28%), Positives = 131/286 (45%), Gaps = 17/286 (5%)
Query: 28 PLTYHQF-QSIVAKMDSPSPAEAPVTPLLVRQATTPLRDDHDEKYGVPTLEELGFDIEGL 86
P Y QF +S+ AK S P++ TP DD + VPTLE+LG + + +
Sbjct: 192 PDVYTQFRKSVEAKCSIRSSTRIPLS-----LGPTPSVDDWGD---VPTLEKLGVEPQEV 243
Query: 87 LPPT-WKGGETEAMRRLERHLERKAWVASFGRPKMTPQSLLA--SQTGLSPFLRFGCLST 143
+ GGE+ + R+ + +K + + K T +L T SP+L FGC+S
Sbjct: 244 TRGMRFVGGESAGVGRVFEYFWKKDLLKVY---KETRNGMLGPDYSTKFSPWLAFGCISP 300
Query: 144 RLFYHDLNKLYKRIKKAPPPLSLHGQLLWREFFYCAATRNPNFDRMLGNPICVQIPWDVN 203
R Y ++ + K + +L+WR++F + + N LG P V W +
Sbjct: 301 RFIYEEVQRYEKERVANNSTYWVLFELIWRDYFRFLSIKCGNSLFHLGGPRNVNGKWSQD 360
Query: 204 MEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWVSWEEGMKIFDE 263
+ W +A+TG+P IDA M +L G++ + R V FL R D+ + W G + F+
Sbjct: 361 QKLFESWRDAKTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVR-DMGLDWRMGAEWFET 419
Query: 264 LLLDADWSVNAGMWMWLSCXXXXXXXXHCYCPVKFGRKADPNGDFI 309
LLD D N G W + + + P K + DP G+++
Sbjct: 420 CLLDYDPCSNYGNWTYGAGVNDPREDRYFSIP-KQAQNYDPEGEYV 464
>pdb|1NP7|A Chain A, Crystal Structure Analysis Of Synechocystis Sp. Pcc6803
Cryptochrome
pdb|1NP7|B Chain B, Crystal Structure Analysis Of Synechocystis Sp. Pcc6803
Cryptochrome
Length = 489
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 108/236 (45%), Gaps = 12/236 (5%)
Query: 78 ELGFDIEGLLPPTWKGGETEAMRRLERHLERKAWVASFGRPKMTPQSLLASQ--TGLSPF 135
++ FD +L ++GGET + RL+ + + + K T ++ + + SP+
Sbjct: 201 QINFDHRSVL--AFQGGETAGLARLQDYFWHGDRLKDY---KETRNGMVGADYSSKFSPW 255
Query: 136 LRFGCLSTRLFYHDLNKLYKRIKKAPPPLSLHGQLLWREFFYCAATRNPN--FDRMLGNP 193
L GCLS R Y ++ + + L +LLWR+FF A + N F+R G
Sbjct: 256 LALGCLSPRFIYQEVKRYEQERVSNDSTHWLIFELLWRDFFRFVAQKYGNKLFNR--GGL 313
Query: 194 ICVQIPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWVS 253
+ PW + W + QTG+P +DA M +L G++ + R VA FL + +L +
Sbjct: 314 LNKNFPWQEDQVRFELWRSGQTGYPLVDANMRELNLTGFMSNRGRQNVASFLCK-NLGID 372
Query: 254 WEEGMKIFDELLLDADWSVNAGMWMWLSCXXXXXXXXHCYCPVKFGRKADPNGDFI 309
W G + F+ L+D D N G W + + + K ++ DP G ++
Sbjct: 373 WRWGAEWFESCLIDYDVCSNWGNWNYTAGIGNDARDFRYFNIPKQSQQYDPQGTYL 428
>pdb|1DNP|A Chain A, Structure Of Deoxyribodipyrimidine Photolyase
pdb|1DNP|B Chain B, Structure Of Deoxyribodipyrimidine Photolyase
Length = 471
Score = 84.7 bits (208), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 82/190 (43%), Gaps = 23/190 (12%)
Query: 132 LSPFLRFGCLSTRLFYHDLNKLYKRIKKAPPPLSLHG--------QLLWREFFYCAATRN 183
LS L G LS R H L A P +L G +L+WREF+ T +
Sbjct: 237 LSASLATGGLSPRQCLHRL--------LAEQPQALDGGAGSVWLNELIWREFYRHLITYH 288
Query: 184 PNFDRMLGNPICV---QIPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHA 240
P+ + P ++ W N L W +TG+P +DA M QL GW+H+ R
Sbjct: 289 PSLCKH--RPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMI 346
Query: 241 VACFLTRGDLWVSWEEGMKIFDELLLDADWSVNAGMWMW-LSCXXXXXXXXHCYCPVKFG 299
A FL + DL + W EG + F L+D D + N G W W S + P G
Sbjct: 347 TASFLVK-DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQG 405
Query: 300 RKADPNGDFI 309
K D G+FI
Sbjct: 406 EKFDHEGEFI 415
>pdb|2E0I|A Chain A, Crystal Structure Of Archaeal Photolyase From Sulfolobus
Tokodaii With Two Fad Molecules: Implication Of A Novel
Light-Harvesting Cofactor
pdb|2E0I|B Chain B, Crystal Structure Of Archaeal Photolyase From Sulfolobus
Tokodaii With Two Fad Molecules: Implication Of A Novel
Light-Harvesting Cofactor
pdb|2E0I|C Chain C, Crystal Structure Of Archaeal Photolyase From Sulfolobus
Tokodaii With Two Fad Molecules: Implication Of A Novel
Light-Harvesting Cofactor
pdb|2E0I|D Chain D, Crystal Structure Of Archaeal Photolyase From Sulfolobus
Tokodaii With Two Fad Molecules: Implication Of A Novel
Light-Harvesting Cofactor
Length = 440
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 95/221 (42%), Gaps = 22/221 (9%)
Query: 89 PTWKGGETEAMRRLERHLERKAWVASFGRPKMTPQSLLASQTGLSPFLRFGCLSTRLFYH 148
P ++GG E + L R+++ F R ++ + LSP L+FG +S R Y+
Sbjct: 183 PLFRGGRREGLYLLHRNVD-------FRRRDYPAEN---NNYRLSPHLKFGTISMREAYY 232
Query: 149 DLNKLYKRIKKAPPPLSLHGQLLWREFFYCAATRNPNFDRMLGNPICVQIPWDVNMEALA 208
+ ++ +L WR+FF A NP+ I W+ N
Sbjct: 233 TQKGKEEFVR----------ELYWRDFFTLLAYYNPHVFGHCYRREYDNISWENNESYFE 282
Query: 209 KWANAQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWVSWEEGMKIFDELLLDA 268
W +TG+P IDA M L G+I+ R VA FL + L+V W G + F L+D
Sbjct: 283 AWKEGRTGYPIIDAGMRMLNSTGYINGRVRMLVAFFLVKV-LFVDWRWGERYFATKLVDY 341
Query: 269 DWSVNAGMWMWLSCXXXXXXXXHCYCPVKFGRKADPNGDFI 309
D ++N G W W++ + P K K DP FI
Sbjct: 342 DPAINNGNWQWIAS-TGVDYMFRVFNPWKQQEKFDPEAKFI 381
>pdb|1IQR|A Chain A, Crystal Structure Of Dna Photolyase From Thermus
Thermophilus
pdb|1IQU|A Chain A, Crystal Structure Of Photolyase-Thymine Complex
pdb|2J07|A Chain A, Thermus Dna Photolyase With 8-Hdf Antenna Chromophore
pdb|2J08|A Chain A, Thermus Dna Photolyase With 8-Iod-Riboflavin Antenna
Chromophore
pdb|2J09|A Chain A, Thermus Dna Photolyase With Fmn Antenna Chromophore
Length = 420
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 72/179 (40%), Gaps = 7/179 (3%)
Query: 132 LSPFLRFGCLSTRLFYHDLNKLYKRIKKAPPPLSLHGQLLWREFFYCAATRNPNFDRMLG 191
LSP+ G LS RL + + + +LLWR+F Y P
Sbjct: 212 LSPYFALGVLSPRLAAWEAER-----RGGEGARKWVAELLWRDFSYHLLYHFPWMAERPL 266
Query: 192 NPICVQIPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLW 251
+P PW + W +TG P +DA M +L G++ + AR A F + L
Sbjct: 267 DPRFQAFPWQEDEALFQAWYEGKTGVPLVDAAMRELHATGFLSNRARMNAAQFAVK-HLL 325
Query: 252 VSWEEGMKIFDELLLDADWSVNAGMWMWL-SCXXXXXXXXHCYCPVKFGRKADPNGDFI 309
+ W+ + F LLLD D +VN W W + PV G + DP G ++
Sbjct: 326 LPWKRCEEAFRHLLLDGDRAVNLQGWQWAGGLGVDAAPYFRVFNPVLQGERHDPEGRWL 384
>pdb|1U3C|A Chain A, Crystal Structure Of The Phr Domain Of Cryptochrome 1 From
Arabidopsis Thaliana
pdb|1U3D|A Chain A, Crystal Structure Of The Phr Domain Of Cryptochrome 1 From
Arabidopsis Thaliana With Amppnp Bound
Length = 509
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 83/190 (43%), Gaps = 8/190 (4%)
Query: 127 ASQTGLSPFLRFGCLSTRLFYHDLN-KLYKRIKKAPPPLSLHGQLLWREFFYCAATRNPN 185
A+ + LSP L FG +S R +H + K + L + +R +
Sbjct: 245 ATTSFLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYIS 304
Query: 186 FDRMLGN--PICVQI---PWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHA 240
F+ + P+ + PW V+ W +TG+P +DA M +L GW+H R
Sbjct: 305 FNHPYSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 364
Query: 241 VACFLTRGDLWVSWEEGMKIFDELLLDADWSVNAGMWMWLSCXXXXXXXXHCYCPVKF-G 299
V+ F + L + W GMK F + LLDAD +A W +++ +F G
Sbjct: 365 VSSFFVKV-LQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEG 423
Query: 300 RKADPNGDFI 309
K DPNG+++
Sbjct: 424 YKFDPNGEYV 433
>pdb|4G85|A Chain A, Crystal Structure Of Human Hisrs
pdb|4G85|B Chain B, Crystal Structure Of Human Hisrs
Length = 517
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 134 PFLRFGCLS--TRLFYHDLNKLYKRIKKAPPPLSLHGQLLWREFFYCAATRNPNFDRMLG 191
PF R+ ++ T + + + K+Y+R P G+ +REF+ C NFD M+
Sbjct: 145 PFARYLAMNKLTNIKRYHIAKVYRR----DNPAMTRGR--YREFYQCDFDIAGNFDPMIP 198
Query: 192 NPICVQIPWDV 202
+ C++I ++
Sbjct: 199 DAECLKIMCEI 209
>pdb|4G84|A Chain A, Crystal Structure Of Human Hisrs
pdb|4G84|B Chain B, Crystal Structure Of Human Hisrs
Length = 464
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 134 PFLRFGCLS--TRLFYHDLNKLYKRIKKAPPPLSLHGQLLWREFFYCAATRNPNFDRMLG 191
PF R+ ++ T + + + K+Y+R P G+ +REF+ C NFD M+
Sbjct: 92 PFARYLAMNKLTNIKRYHIAKVYRR----DNPAMTRGR--YREFYQCDFDIAGNFDPMIP 145
Query: 192 NPICVQIPWDV 202
+ C++I ++
Sbjct: 146 DAECLKIMCEI 156
>pdb|3QR1|A Chain A, Crystal Structure Of L. Pealei Plc21
pdb|3QR1|D Chain D, Crystal Structure Of L. Pealei Plc21
Length = 813
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 245 LTRGDLWVSWEEGMKIFDELLLDAD 269
L +GD ++ WEEG F E+LL D
Sbjct: 22 LIKGDKFLKWEEGSSSFTEILLRVD 46
>pdb|2XRG|A Chain A, Crystal Structure Of Autotaxin (Enpp2) In Complex With The
Ha155 Boronic Acid Inhibitor
Length = 862
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 24 GGKTPLTYHQFQSIVAKMDSPSPAEAPVTPLLVRQATTPLRDDHDE 69
G P+ H + I + +D PA+ PL V P R D+DE
Sbjct: 758 GSSIPVPTHYYSIITSCLDFTQPADKCDGPLSVSSFILPHRPDNDE 803
>pdb|3NKM|A Chain A, Crystal Structure Of Mouse Autotaxin
pdb|3NKN|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
14:0-Lpa
pdb|3NKO|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
16:0-Lpa
pdb|3NKP|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
18:1-Lpa
pdb|3NKQ|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
18:3-Lpa
pdb|3NKR|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
22:6-Lpa
Length = 831
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 24 GGKTPLTYHQFQSIVAKMDSPSPAEAPVTPLLVRQATTPLRDDHDE 69
G P+ H + I + +D PA+ PL V P R D+DE
Sbjct: 719 GSSIPVPTHYYSIITSCLDFTQPADKCDGPLSVSSFILPHRPDNDE 764
>pdb|2XR9|A Chain A, Crystal Structure Of Autotaxin (Enpp2)
Length = 827
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 24 GGKTPLTYHQFQSIVAKMDSPSPAEAPVTPLLVRQATTPLRDDHDE 69
G P+ H + I + +D PA+ PL V P R D+DE
Sbjct: 723 GSSIPVPTHYYSIITSCLDFTQPADKCDGPLSVSSFILPHRPDNDE 768
>pdb|3QR0|A Chain A, Crystal Structure Of S. Officinalis Plc21
Length = 816
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 245 LTRGDLWVSWEEGMKIFDELLLDAD 269
L +GD ++ WEEG F E+LL D
Sbjct: 22 LIKGDKFLKWEEGSSGFIEILLRVD 46
>pdb|2IP4|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide Synthetase
From Thermus Thermophilus Hb8
pdb|2IP4|B Chain B, Crystal Structure Of Glycinamide Ribonucleotide Synthetase
From Thermus Thermophilus Hb8
Length = 417
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 13/52 (25%)
Query: 170 LLWREFFYCAATRNPNFDRMLGNP-------ICVQIPWDVNMEALAKWANAQ 214
LLW+ A ++P R+ P + +PW+ ++EALA WA A+
Sbjct: 15 LLWK------AAQSPRVKRLYAAPGNAGXEALAELVPWNGDVEALADWALAE 60
>pdb|2ZUS|A Chain A, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase
pdb|2ZUS|B Chain B, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase
pdb|2ZUS|C Chain C, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase
pdb|2ZUS|D Chain D, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase
pdb|2ZUT|A Chain A, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Galnac
pdb|2ZUT|B Chain B, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Galnac
pdb|2ZUT|C Chain C, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Galnac
pdb|2ZUT|D Chain D, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Galnac
pdb|2ZUU|A Chain A, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac
pdb|2ZUU|B Chain B, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac
pdb|2ZUU|C Chain C, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac
pdb|2ZUU|D Chain D, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac
pdb|2ZUV|A Chain A, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac, Ethylene Glycol,
And Nitrate
pdb|2ZUV|B Chain B, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac, Ethylene Glycol,
And Nitrate
pdb|2ZUW|A Chain A, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac And Sulfate
pdb|2ZUW|B Chain B, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac And Sulfate
pdb|2ZUW|C Chain C, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac And Sulfate
pdb|2ZUW|D Chain D, Crystal Structure Of Galacto-N-BioseLACTO-N-Biose I
Phosphorylase In Complex With Glcnac And Sulfate
Length = 759
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 7/69 (10%)
Query: 200 WDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWVSWEEGMK 259
W V +A W + +GF + +++ + H A FL GD W+ E
Sbjct: 271 WRVPRKAQRDWIDFLSGF-----VRENVKQLADMSHAAGKEAMMFL--GDQWIGTEPYKD 323
Query: 260 IFDELLLDA 268
FDEL LDA
Sbjct: 324 GFDELGLDA 332
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.455
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,232,115
Number of Sequences: 62578
Number of extensions: 425362
Number of successful extensions: 880
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 821
Number of HSP's gapped (non-prelim): 28
length of query: 309
length of database: 14,973,337
effective HSP length: 99
effective length of query: 210
effective length of database: 8,778,115
effective search space: 1843404150
effective search space used: 1843404150
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)