BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4171
(309 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6ZZY0|CRY1_SYLBO Cryptochrome-1 OS=Sylvia borin GN=CRY1 PE=2 SV=1
Length = 620
Score = 471 bits (1212), Expect = e-132, Method: Compositional matrix adjust.
Identities = 221/306 (72%), Positives = 257/306 (83%), Gaps = 7/306 (2%)
Query: 8 KLTLSLPSSRRIIEKNGGKTPLTYHQFQSIVAKMDSPSPAEAPV---TPLLVRQATTPLR 64
+++ +L +IIE NGG+ PLTY +FQ+++++M+ P E PV TP ++++ TTP+
Sbjct: 127 RISHTLYDLDKIIELNGGQPPLTYKRFQTLISRME---PLEMPVETITPEVMKKCTTPVS 183
Query: 65 DDHDEKYGVPTLEELGFDIEGLLPPTWKGGETEAMRRLERHLERKAWVASFGRPKMTPQS 124
DDHDEKYGVP+LEELGFD +GL W GGETEA+ RLERHLERKAWVA+F RP+M S
Sbjct: 184 DDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVANFERPRMNANS 243
Query: 125 LLASQTGLSPFLRFGCLSTRLFYHDLNKLYKRIKK-APPPLSLHGQLLWREFFYCAATRN 183
LLAS TGLSP+LRFGCLS RLFY L LYK++KK + PPLSL+GQLLWREFFY AAT N
Sbjct: 244 LLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYGQLLWREFFYTAATNN 303
Query: 184 PNFDRMLGNPICVQIPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVAC 243
P FD+M GNPICVQIPWD N EALAKWA +TGFPWIDAIMTQLR+EGWIHHLARHAVAC
Sbjct: 304 PRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVAC 363
Query: 244 FLTRGDLWVSWEEGMKIFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVKFGRKAD 303
FLTRGDLW+SWEEGMK+F+ELLLDADWSVNAG WMWLSCSSFFQQFFHCYCPV FGR+ D
Sbjct: 364 FLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
Query: 304 PNGDFI 309
PNGD+I
Sbjct: 424 PNGDYI 429
>sp|Q8QG61|CRY1_CHICK Cryptochrome-1 OS=Gallus gallus GN=CRY1 PE=2 SV=1
Length = 621
Score = 471 bits (1212), Expect = e-132, Method: Compositional matrix adjust.
Identities = 221/306 (72%), Positives = 257/306 (83%), Gaps = 7/306 (2%)
Query: 8 KLTLSLPSSRRIIEKNGGKTPLTYHQFQSIVAKMDSPSPAEAPV---TPLLVRQATTPLR 64
+++ +L +IIE NGG+ PLTY +FQ+++++M+ P E PV TP ++++ TTP+
Sbjct: 127 RISHTLYDLDKIIELNGGQPPLTYKRFQTLISRME---PLEMPVETITPEVMQKCTTPVS 183
Query: 65 DDHDEKYGVPTLEELGFDIEGLLPPTWKGGETEAMRRLERHLERKAWVASFGRPKMTPQS 124
DDHDEKYGVP+LEELGFD +GL W GGETEA+ RLERHLERKAWVA+F RP+M S
Sbjct: 184 DDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVANFERPRMNANS 243
Query: 125 LLASQTGLSPFLRFGCLSTRLFYHDLNKLYKRIKK-APPPLSLHGQLLWREFFYCAATRN 183
LLAS TGLSP+LRFGCLS RLFY L LYK++KK + PPLSL+GQLLWREFFY AAT N
Sbjct: 244 LLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYGQLLWREFFYTAATNN 303
Query: 184 PNFDRMLGNPICVQIPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVAC 243
P FD+M GNPICVQIPWD N EALAKWA +TGFPWIDAIMTQLR+EGWIHHLARHAVAC
Sbjct: 304 PRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVAC 363
Query: 244 FLTRGDLWVSWEEGMKIFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVKFGRKAD 303
FLTRGDLW+SWEEGMK+F+ELLLDADWSVNAG WMWLSCSSFFQQFFHCYCPV FGR+ D
Sbjct: 364 FLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
Query: 304 PNGDFI 309
PNGD+I
Sbjct: 424 PNGDYI 429
>sp|Q16526|CRY1_HUMAN Cryptochrome-1 OS=Homo sapiens GN=CRY1 PE=1 SV=1
Length = 586
Score = 469 bits (1208), Expect = e-132, Method: Compositional matrix adjust.
Identities = 221/306 (72%), Positives = 255/306 (83%), Gaps = 7/306 (2%)
Query: 8 KLTLSLPSSRRIIEKNGGKTPLTYHQFQSIVAKMDSPSPAEAPV---TPLLVRQATTPLR 64
+++ +L +IIE NGG+ PLTY +FQ++++KM+ P E PV T ++ + TTPL
Sbjct: 127 RISHTLYDLDKIIELNGGQPPLTYKRFQTLISKME---PLEIPVETITSEVIEKCTTPLS 183
Query: 65 DDHDEKYGVPTLEELGFDIEGLLPPTWKGGETEAMRRLERHLERKAWVASFGRPKMTPQS 124
DDHDEKYGVP+LEELGFD +GL W GGETEA+ RLERHLERKAWVA+F RP+M S
Sbjct: 184 DDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVANFERPRMNANS 243
Query: 125 LLASQTGLSPFLRFGCLSTRLFYHDLNKLYKRIKK-APPPLSLHGQLLWREFFYCAATRN 183
LLAS TGLSP+LRFGCLS RLFY L LYK++KK + PPLSL+GQLLWREFFY AAT N
Sbjct: 244 LLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYGQLLWREFFYTAATNN 303
Query: 184 PNFDRMLGNPICVQIPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVAC 243
P FD+M GNPICVQIPWD N EALAKWA +TGFPWIDAIMTQLR+EGWIHHLARHAVAC
Sbjct: 304 PRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVAC 363
Query: 244 FLTRGDLWVSWEEGMKIFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVKFGRKAD 303
FLTRGDLW+SWEEGMK+F+ELLLDADWS+NAG WMWLSCSSFFQQFFHCYCPV FGR+ D
Sbjct: 364 FLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
Query: 304 PNGDFI 309
PNGD+I
Sbjct: 424 PNGDYI 429
>sp|Q8WP19|CRY1_MACFA Cryptochrome-1 OS=Macaca fascicularis GN=CRY1 PE=2 SV=1
Length = 586
Score = 469 bits (1206), Expect = e-131, Method: Compositional matrix adjust.
Identities = 220/306 (71%), Positives = 255/306 (83%), Gaps = 7/306 (2%)
Query: 8 KLTLSLPSSRRIIEKNGGKTPLTYHQFQSIVAKMDSPSPAEAPV---TPLLVRQATTPLR 64
+++ +L +IIE NGG+ PLTY +FQ++++KM+ P E PV T ++ + TTPL
Sbjct: 127 RISHTLYDLDKIIELNGGQPPLTYKRFQTLISKME---PLEIPVETITSEVIEKCTTPLS 183
Query: 65 DDHDEKYGVPTLEELGFDIEGLLPPTWKGGETEAMRRLERHLERKAWVASFGRPKMTPQS 124
DDHDEKYGVP+LEELGFD +GL W GGETEA+ RLERHLERKAWVA+F RP+M S
Sbjct: 184 DDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVANFERPRMNANS 243
Query: 125 LLASQTGLSPFLRFGCLSTRLFYHDLNKLYKRIKK-APPPLSLHGQLLWREFFYCAATRN 183
LLAS TGLSP+LRFGCLS RLFY L LYK++K+ + PPLSL+GQLLWREFFY AAT N
Sbjct: 244 LLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKRNSSPPLSLYGQLLWREFFYTAATNN 303
Query: 184 PNFDRMLGNPICVQIPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVAC 243
P FD+M GNPICVQIPWD N EALAKWA +TGFPWIDAIMTQLR+EGWIHHLARHAVAC
Sbjct: 304 PRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVAC 363
Query: 244 FLTRGDLWVSWEEGMKIFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVKFGRKAD 303
FLTRGDLW+SWEEGMK+F+ELLLDADWS+NAG WMWLSCSSFFQQFFHCYCPV FGR+ D
Sbjct: 364 FLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
Query: 304 PNGDFI 309
PNGD+I
Sbjct: 424 PNGDYI 429
>sp|Q32Q86|CRY1_RAT Cryptochrome-1 OS=Rattus norvegicus GN=Cry1 PE=2 SV=1
Length = 588
Score = 468 bits (1205), Expect = e-131, Method: Compositional matrix adjust.
Identities = 221/306 (72%), Positives = 255/306 (83%), Gaps = 7/306 (2%)
Query: 8 KLTLSLPSSRRIIEKNGGKTPLTYHQFQSIVAKMDSPSPAEAP---VTPLLVRQATTPLR 64
+++ +L +IIE NGG+ PLTY +FQ++V+KM+ P E P +T ++ + TTPL
Sbjct: 127 RISHTLYDLDKIIELNGGQPPLTYKRFQTLVSKME---PLEMPADTITSDVIGKCTTPLS 183
Query: 65 DDHDEKYGVPTLEELGFDIEGLLPPTWKGGETEAMRRLERHLERKAWVASFGRPKMTPQS 124
DDHDEKYGVP+LEELGFD +GL W GGETEA+ RLERHLERKAWVA+F RP+M S
Sbjct: 184 DDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVANFERPRMNANS 243
Query: 125 LLASQTGLSPFLRFGCLSTRLFYHDLNKLYKRIKK-APPPLSLHGQLLWREFFYCAATRN 183
LLAS TGLSP+LRFGCLS RLFY L LYK++KK + PPLSL+GQLLWREFFY AAT N
Sbjct: 244 LLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYGQLLWREFFYTAATNN 303
Query: 184 PNFDRMLGNPICVQIPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVAC 243
P FD+M GNPICVQIPWD N EALAKWA +TGFPWIDAIMTQLR+EGWIHHLARHAVAC
Sbjct: 304 PRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVAC 363
Query: 244 FLTRGDLWVSWEEGMKIFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVKFGRKAD 303
FLTRGDLW+SWEEGMK+F+ELLLDADWS+NAG WMWLSCSSFFQQFFHCYCPV FGR+ D
Sbjct: 364 FLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
Query: 304 PNGDFI 309
PNGD+I
Sbjct: 424 PNGDYI 429
>sp|P97784|CRY1_MOUSE Cryptochrome-1 OS=Mus musculus GN=Cry1 PE=1 SV=1
Length = 606
Score = 468 bits (1203), Expect = e-131, Method: Compositional matrix adjust.
Identities = 220/306 (71%), Positives = 254/306 (83%), Gaps = 7/306 (2%)
Query: 8 KLTLSLPSSRRIIEKNGGKTPLTYHQFQSIVAKMDSPSPAEAP---VTPLLVRQATTPLR 64
+++ +L +IIE NGG+ PLTY +FQ++V+KM+ P E P +T ++ + TPL
Sbjct: 127 RISHTLYDLDKIIELNGGQPPLTYKRFQTLVSKME---PLEMPADTITSDVIGKCMTPLS 183
Query: 65 DDHDEKYGVPTLEELGFDIEGLLPPTWKGGETEAMRRLERHLERKAWVASFGRPKMTPQS 124
DDHDEKYGVP+LEELGFD +GL W GGETEA+ RLERHLERKAWVA+F RP+M S
Sbjct: 184 DDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVANFERPRMNANS 243
Query: 125 LLASQTGLSPFLRFGCLSTRLFYHDLNKLYKRIKK-APPPLSLHGQLLWREFFYCAATRN 183
LLAS TGLSP+LRFGCLS RLFY L LYK++KK + PPLSL+GQLLWREFFY AAT N
Sbjct: 244 LLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYGQLLWREFFYTAATNN 303
Query: 184 PNFDRMLGNPICVQIPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVAC 243
P FD+M GNPICVQIPWD N EALAKWA +TGFPWIDAIMTQLR+EGWIHHLARHAVAC
Sbjct: 304 PRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVAC 363
Query: 244 FLTRGDLWVSWEEGMKIFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVKFGRKAD 303
FLTRGDLW+SWEEGMK+F+ELLLDADWS+NAG WMWLSCSSFFQQFFHCYCPV FGR+ D
Sbjct: 364 FLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
Query: 304 PNGDFI 309
PNGD+I
Sbjct: 424 PNGDYI 429
>sp|Q5IZC5|CRY1_ERIRU Cryptochrome-1 OS=Erithacus rubecula GN=CRY1 PE=2 SV=2
Length = 620
Score = 466 bits (1199), Expect = e-130, Method: Compositional matrix adjust.
Identities = 220/306 (71%), Positives = 256/306 (83%), Gaps = 7/306 (2%)
Query: 8 KLTLSLPSSRRIIEKNGGKTPLTYHQFQSIVAKMDSPSPAEAPV---TPLLVRQATTPLR 64
+++ +L +IIE NGG+ PLTY +FQ+++++M+ P E PV TP ++++ TTP+
Sbjct: 127 RISHTLYDLDKIIELNGGQPPLTYKRFQTLISRME---PLEMPVETITPEVMKKCTTPVF 183
Query: 65 DDHDEKYGVPTLEELGFDIEGLLPPTWKGGETEAMRRLERHLERKAWVASFGRPKMTPQS 124
DDHDEKYGVP+LEELGFD +GL W GGETEA+ RLERHLERKA VA+F RP+M S
Sbjct: 184 DDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKASVANFERPRMNANS 243
Query: 125 LLASQTGLSPFLRFGCLSTRLFYHDLNKLYKRIKK-APPPLSLHGQLLWREFFYCAATRN 183
LLAS TGLSP+LRFGCLS RLFY L LYK++KK + PPLSL+GQLLWREFFY AAT N
Sbjct: 244 LLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYGQLLWREFFYTAATNN 303
Query: 184 PNFDRMLGNPICVQIPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVAC 243
P FD+M GNPICVQIPWD N EALAKWA +TGFPWIDAIMTQLR+EGWIHHLARHAVAC
Sbjct: 304 PRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVAC 363
Query: 244 FLTRGDLWVSWEEGMKIFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVKFGRKAD 303
FLTRGDLW+SWEEGMK+F+ELLLDADWSVNAG WMWLSCSSFFQQFFHCYCPV FGR+ D
Sbjct: 364 FLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
Query: 304 PNGDFI 309
PNGD+I
Sbjct: 424 PNGDYI 429
>sp|Q70AD6|CRY1_SPAJD Cryptochrome-1 OS=Spalax judaei GN=CRY1 PE=2 SV=1
Length = 587
Score = 463 bits (1192), Expect = e-130, Method: Compositional matrix adjust.
Identities = 218/306 (71%), Positives = 253/306 (82%), Gaps = 7/306 (2%)
Query: 8 KLTLSLPSSRRIIEKNGGKTPLTYHQFQSIVAKMDSPSPAEAPV---TPLLVRQATTPLR 64
+++ +L +IIE NGG+ PLTY +FQ++++KM+ P E PV T ++ + TTPL
Sbjct: 127 RISHTLYDLDKIIELNGGQPPLTYKRFQTLISKME---PLEIPVETITSEVIEKCTTPLS 183
Query: 65 DDHDEKYGVPTLEELGFDIEGLLPPTWKGGETEAMRRLERHLERKAWVASFGRPKMTPQS 124
DDHDEKYGVP+LEELGFD +GL W GGETEA+ RLERHLER+AWVA+F RP+M S
Sbjct: 184 DDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERRAWVANFERPRMNANS 243
Query: 125 LLASQTGLSPFLRFGCLSTRLFYHDLNKLYKRIKK-APPPLSLHGQLLWREFFYCAATRN 183
LLAS TGLSP+LRFGCLS RLFY L LYK++KK + PPLSL+GQLLWREFFY AAT N
Sbjct: 244 LLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYGQLLWREFFYTAATNN 303
Query: 184 PNFDRMLGNPICVQIPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVAC 243
P FD+M GNPICVQIPWD N EALAKWA +TGFPWIDAIMTQLR+EGWIHHLARHAVAC
Sbjct: 304 PRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVAC 363
Query: 244 FLTRGDLWVSWEEGMKIFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVKFGRKAD 303
FLT DLW+SWEEGMK+F+ELLLDADWS+NAG WMWLSCSSFFQQFFHCYCPV FGR+ D
Sbjct: 364 FLTGSDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
Query: 304 PNGDFI 309
PNGD+I
Sbjct: 424 PNGDYI 429
>sp|Q49AN0|CRY2_HUMAN Cryptochrome-2 OS=Homo sapiens GN=CRY2 PE=1 SV=2
Length = 593
Score = 444 bits (1142), Expect = e-124, Method: Compositional matrix adjust.
Identities = 206/293 (70%), Positives = 242/293 (82%), Gaps = 1/293 (0%)
Query: 18 RIIEKNGGKTPLTYHQFQSIVAKMDSPSPAEAPVTPLLVRQATTPLRDDHDEKYGVPTLE 77
RIIE NG K PLTY +FQ+I+++M+ P VT + ++++HDE YGVP+LE
Sbjct: 156 RIIELNGQKPPLTYKRFQAIISRMELPKKPVGLVTSQQMESCRAEIQENHDETYGVPSLE 215
Query: 78 ELGFDIEGLLPPTWKGGETEAMRRLERHLERKAWVASFGRPKMTPQSLLASQTGLSPFLR 137
ELGF EGL P W+GGETEA+ RL++HLERKAWVA++ RP+M SLLAS TGLSP+LR
Sbjct: 216 ELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLR 275
Query: 138 FGCLSTRLFYHDLNKLYKRIKK-APPPLSLHGQLLWREFFYCAATRNPNFDRMLGNPICV 196
FGCLS RLFY+ L LYK++K+ + PPLSL GQLLWREFFY AAT NP FDRM GNPIC+
Sbjct: 276 FGCLSCRLFYYRLWDLYKKVKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICI 335
Query: 197 QIPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWVSWEE 256
QIPWD N EALAKWA +TGFPWIDAIMTQLR+EGWIHHLARHAVACFLTRGDLWVSWE
Sbjct: 336 QIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWES 395
Query: 257 GMKIFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVKFGRKADPNGDFI 309
G+++FDELLLDAD+SVNAG WMWLSCS+FFQQFFHCYCPV FGR+ DP+GD+I
Sbjct: 396 GVRVFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYI 448
>sp|Q8QG60|CRY2_CHICK Cryptochrome-2 OS=Gallus gallus GN=CRY2 PE=2 SV=2
Length = 582
Score = 444 bits (1142), Expect = e-124, Method: Compositional matrix adjust.
Identities = 204/296 (68%), Positives = 250/296 (84%), Gaps = 7/296 (2%)
Query: 18 RIIEKNGGKTPLTYHQFQSIVAKMDSPSPAEAPVTPLLVRQATT---PLRDDHDEKYGVP 74
RIIE NG K PLTY +FQ+I+++M+ P + PV+ ++ +Q T ++++HD+ YGVP
Sbjct: 146 RIIELNGNKPPLTYKRFQAIISRMELP---KKPVSSIVSQQMETCKVDIQENHDDVYGVP 202
Query: 75 TLEELGFDIEGLLPPTWKGGETEAMRRLERHLERKAWVASFGRPKMTPQSLLASQTGLSP 134
+LEELGF +GL P W+GGETEA+ RL++HLERKAWVA++ RP+M SLLAS TGLSP
Sbjct: 203 SLEELGFPTDGLAPAVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSP 262
Query: 135 FLRFGCLSTRLFYHDLNKLYKRIKK-APPPLSLHGQLLWREFFYCAATRNPNFDRMLGNP 193
+LRFGCLS RLFY+ L +LYK++K+ + PPLSL+GQLLWREFFY AAT NP FDRM GNP
Sbjct: 263 YLRFGCLSCRLFYYRLWELYKKVKRNSTPPLSLYGQLLWREFFYTAATNNPKFDRMEGNP 322
Query: 194 ICVQIPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWVS 253
IC+QIPWD N EALAKWA +TGFPWIDAIMTQLR+EGWIHHLARHAVACFLTRGDLW+S
Sbjct: 323 ICIQIPWDKNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWIS 382
Query: 254 WEEGMKIFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVKFGRKADPNGDFI 309
WE G+++FDELLLDAD+SVNAG WMWLSCS+FFQQFFHCYCPV FGR+ DP+GD++
Sbjct: 383 WESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYV 438
>sp|Q9R194|CRY2_MOUSE Cryptochrome-2 OS=Mus musculus GN=Cry2 PE=1 SV=1
Length = 592
Score = 443 bits (1139), Expect = e-124, Method: Compositional matrix adjust.
Identities = 203/293 (69%), Positives = 242/293 (82%), Gaps = 1/293 (0%)
Query: 18 RIIEKNGGKTPLTYHQFQSIVAKMDSPSPAEAPVTPLLVRQATTPLRDDHDEKYGVPTLE 77
RIIE NG K PLTY +FQ+++++M+ P V+ + ++++HD+ YGVP+LE
Sbjct: 155 RIIELNGQKPPLTYKRFQALISRMELPKKPAVAVSSQQMESCRAEIQENHDDTYGVPSLE 214
Query: 78 ELGFDIEGLLPPTWKGGETEAMRRLERHLERKAWVASFGRPKMTPQSLLASQTGLSPFLR 137
ELGF EGL P W+GGETEA+ RL++HLERKAWVA++ RP+M SLLAS TGLSP+LR
Sbjct: 215 ELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLR 274
Query: 138 FGCLSTRLFYHDLNKLYKRIKK-APPPLSLHGQLLWREFFYCAATRNPNFDRMLGNPICV 196
FGCLS RLFY+ L LYK++K+ + PPLSL GQLLWREFFY AAT NP FDRM GNPIC+
Sbjct: 275 FGCLSCRLFYYRLWDLYKKVKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICI 334
Query: 197 QIPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWVSWEE 256
QIPWD N EALAKWA +TGFPWIDAIMTQLR+EGWIHHLARHAVACFLTRGDLWVSWE
Sbjct: 335 QIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWES 394
Query: 257 GMKIFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVKFGRKADPNGDFI 309
G+++FDELLLDAD+SVNAG WMWLSCS+FFQQFFHCYCPV FGR+ DP+GD+I
Sbjct: 395 GVRVFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYI 447
>sp|Q923I8|CRY2_RAT Cryptochrome-2 OS=Rattus norvegicus GN=Cry2 PE=2 SV=1
Length = 594
Score = 440 bits (1132), Expect = e-123, Method: Compositional matrix adjust.
Identities = 202/293 (68%), Positives = 242/293 (82%), Gaps = 1/293 (0%)
Query: 18 RIIEKNGGKTPLTYHQFQSIVAKMDSPSPAEAPVTPLLVRQATTPLRDDHDEKYGVPTLE 77
RIIE NG K PLTY +FQ+++++M+ P V+ + ++++HD+ YGVP+LE
Sbjct: 155 RIIELNGQKPPLTYKRFQALISRMELPKKPVGAVSSQHMENCRAEIQENHDDTYGVPSLE 214
Query: 78 ELGFDIEGLLPPTWKGGETEAMRRLERHLERKAWVASFGRPKMTPQSLLASQTGLSPFLR 137
ELGF EGL P W+GGETEA+ RL++HLERKAWVA++ RP+M SLLAS TGLSP+LR
Sbjct: 215 ELGFPTEGLGPAVWQGGETEALVRLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLR 274
Query: 138 FGCLSTRLFYHDLNKLYKRIKK-APPPLSLHGQLLWREFFYCAATRNPNFDRMLGNPICV 196
FGCLS RLFY+ L LY+++K+ + PPLSL GQLLWREFFY AAT NP FDRM GNPIC+
Sbjct: 275 FGCLSCRLFYYRLWDLYRKVKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICI 334
Query: 197 QIPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWVSWEE 256
QIPWD N EALAKWA +TGFPWIDAIMTQLR+EGWIHHLARHAVACFLTRGDLWVSWE
Sbjct: 335 QIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWES 394
Query: 257 GMKIFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVKFGRKADPNGDFI 309
G+++FDELLLDAD+SVNAG WMWLSCS+FFQQFFHCYCPV FGR+ DP+GD+I
Sbjct: 395 GVRVFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYI 447
>sp|Q0E2Y1|UVR3_ORYSJ (6-4)DNA photolyase OS=Oryza sativa subsp. japonica GN=UVR3 PE=3
SV=1
Length = 551
Score = 308 bits (790), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 151/296 (51%), Positives = 196/296 (66%), Gaps = 14/296 (4%)
Query: 19 IIEKNGGKTPLTYHQFQSIVAKMDSPSPAEAPVTPLLVRQATTPLRDDHDEK--YGVPTL 76
IIEKNGG+ P+TY F +I + P P++ + P D E VP +
Sbjct: 163 IIEKNGGRPPMTYQSFVAIAGE---------PPEPIMEEYSELPPVGDTGEYELLPVPRV 213
Query: 77 EELGF-DIEGLLPPTWKGGETEAMRRLERHLERKAWVASFGRPKMTPQSLLA-SQTGLSP 134
EELG+ DI ++GGETEA++R+ L K WVA F +PK P + L + T LSP
Sbjct: 214 EELGYGDISQEDLSLFRGGETEALKRMRESLHDKEWVAKFEKPKGDPSAFLKPATTVLSP 273
Query: 135 FLRFGCLSTRLFYHDLNKLYKRIKK-APPPLSLHGQLLWREFFYCAATRNPNFDRMLGNP 193
+L+FGCLS+R FYH + +Y+ KK PP+SL GQLLWR+FFY A PNFD+M GN
Sbjct: 274 YLKFGCLSSRYFYHCIQDIYRSTKKHTNPPVSLTGQLLWRDFFYTVAFGTPNFDQMKGNK 333
Query: 194 ICVQIPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWVS 253
IC QIPW N E W + +TG+PWIDAIM QLR+ GW+HHLARH+VACFLTRGDL++
Sbjct: 334 ICKQIPWTENEELFPAWRDGRTGYPWIDAIMIQLRKWGWMHHLARHSVACFLTRGDLFIH 393
Query: 254 WEEGMKIFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVKFGRKADPNGDFI 309
WE+G +F+ LL+D+DW++N G WMWLSCSSFF Q+ Y P FG+K DPNG++I
Sbjct: 394 WEKGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQYHRIYSPTSFGKKYDPNGNYI 449
>sp|O48652|UVR3_ARATH (6-4)DNA photolyase OS=Arabidopsis thaliana GN=UVR3 PE=1 SV=2
Length = 556
Score = 307 bits (787), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 152/295 (51%), Positives = 204/295 (69%), Gaps = 9/295 (3%)
Query: 19 IIEKNGGKTPLTYHQFQSIVAKMDSPSPAEAPVTPLLVRQATTPLRDDHDEKYG-VPTLE 77
IIEKNGGK PL+Y F + + PS A++ + ++ + P+ D + VP+LE
Sbjct: 168 IIEKNGGKPPLSYQSFLKVAGE---PSCAKSEL--VMSYSSLPPIGDIGNLGISEVPSLE 222
Query: 78 ELGF-DIEGLLPPTWKGGETEAMRRLERHLERKAWVASFGRPKMTPQSLLA-SQTGLSPF 135
ELG+ D E ++GGE+EA++RL + + KAWVA+F +PK P + L + T +SP+
Sbjct: 223 ELGYKDDEQADWTPFRGGESEALKRLTKSISDKAWVANFEKPKGDPSAFLKPATTVMSPY 282
Query: 136 LRFGCLSTRLFYHDLNKLYKRIKK-APPPLSLHGQLLWREFFYCAATRNPNFDRMLGNPI 194
L+FGCLS+R FY L +YK +KK PP+SL GQLLWREFFY A PNFD+M GN I
Sbjct: 283 LKFGCLSSRYFYQCLQNIYKDVKKHTSPPVSLLGQLLWREFFYTTAFGTPNFDKMKGNRI 342
Query: 195 CVQIPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWVSW 254
C QIPW+ + LA W + +TG+PWIDAIM QL + GW+HHLARH VACFLTRGDL++ W
Sbjct: 343 CKQIPWNEDHAMLAAWRDGKTGYPWIDAIMVQLLKWGWMHHLARHCVACFLTRGDLFIHW 402
Query: 255 EEGMKIFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVKFGRKADPNGDFI 309
E+G +F+ LL+D+DW++N G WMWLSCSSFF QF Y P+ FG+K DP+G +I
Sbjct: 403 EQGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQFNRIYSPISFGKKYDPDGKYI 457
>sp|Q293P8|CRY1_DROPS Cryptochrome-1 OS=Drosophila pseudoobscura pseudoobscura GN=cry
PE=3 SV=2
Length = 540
Score = 213 bits (541), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 132/323 (40%), Positives = 173/323 (53%), Gaps = 22/323 (6%)
Query: 7 KKLTLSLPSSRRIIEKNGGKTPLTYHQFQSIVAKMDSP-SPA-EAPVTPLLVRQATTPLR 64
+K++ +L R +IE NGG PLTY F V + P PA +A + Q LR
Sbjct: 134 EKVSHTLWDPRLVIETNGGIPPLTYQMFLHTVQIIGVPPRPAIDAHINDATFIQLAPELR 193
Query: 65 DDHDEKYGVPTLEELGF--DIEGLLPP-TWKGGETEAMRRLERHL--ERKAWVASFGRPK 119
VP E D G L W+GGET+A+ LE L ER A+ + P
Sbjct: 194 QHLGCFDQVPNPEHFNIYSDNMGFLAKINWRGGETQALALLEERLKVERNAFERGYYLPN 253
Query: 120 MTPQSLLASQTGLSPFLRFGCLSTRLFYHDLNKLYKRIKKAPPPLSLH--------GQLL 171
++ + +S LRFGCLS R FY ++ L++ ++ A + GQL+
Sbjct: 254 QANPNIQEAPKSMSAHLRFGCLSVRRFYWSVHDLFENVQLAACVRGVQIEGGAHITGQLI 313
Query: 172 WREFFYCAATRNPNFDRMLGNPICVQIPW---DVNMEALAKWANAQTGFPWIDAIMTQLR 228
WRE+FY + NPN+DRM GN IC+ IPW D N+ L +W QTGFP ID M QL
Sbjct: 314 WREYFYTMSVNNPNYDRMEGNEICLTIPWAKPDENL--LQRWRLGQTGFPLIDGAMRQLL 371
Query: 229 EEGWIHHLARHAVACFLTRGDLWVSWEEGMKIFDELLLDADWSVNAGMWMWLSCSSFFQQ 288
EGW+HH R+ VA FLTRG LW SWE G+K F + LLDADWSV AG WMW+S S+F +
Sbjct: 372 AEGWLHHTLRNTVATFLTRGGLWQSWEPGLKHFLKYLLDADWSVCAGNWMWVSSSAFERL 431
Query: 289 FFHCY--CPVKFGRKADPNGDFI 309
CPV ++ DP G +I
Sbjct: 432 LDSSLVTCPVALAKRLDPEGVYI 454
>sp|Q17DK5|CRY1_AEDAE Cryptochrome-1 OS=Aedes aegypti GN=cry PE=3 SV=1
Length = 545
Score = 213 bits (541), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 122/325 (37%), Positives = 177/325 (54%), Gaps = 16/325 (4%)
Query: 1 MSSSIEKKLTLSLPSSRRIIEKNGGKTPLTYHQFQSIVAKMDSP-SPAEAPVTPLLVRQA 59
M +K++ +L ++II NGG PLTY F V + P P AP + +
Sbjct: 126 MDVKCVEKVSHTLWDPQQIIRTNGGIPPLTYQMFLHTVDIIGKPPRPVAAPSFEFVEFGS 185
Query: 60 TTPLRDDHDEKYGVPTL--EELGFDIEG---LLPPTWKGGETEAMRRLERHL--ERKAWV 112
+ + V L E+ G EG + W GGET+A+ L L E +A++
Sbjct: 186 IPSILAQEVKLQQVRNLSPEDFGIYYEGNPDISHQQWMGGETKALECLGHRLKQEEEAFL 245
Query: 113 ASFGRPKMTPQSLLASQTGLSPFLRFGCLSTRLFYHDLNKLYKRIK-----KAPPPLSLH 167
+ P L T +S LRFGCLS R+FY ++ LY++++ + P +
Sbjct: 246 GGYFLPTQAKPEFLVPPTSMSAALRFGCLSVRMFYWCVHDLYEKVQANNQYRNPGGQHIT 305
Query: 168 GQLLWREFFYCAATRNPNFDRMLGNPICVQIPW-DVNMEALAKWANAQTGFPWIDAIMTQ 226
GQL+WRE+FY + NP++ M NPIC+ IPW + ++L +W +TGFP IDA M Q
Sbjct: 306 GQLIWREYFYTMSVHNPHYAEMEANPICLNIPWYEPKDDSLDRWKEGRTGFPMIDAAMRQ 365
Query: 227 LREEGWIHHLARHAVACFLTRGDLWVSWEEGMKIFDELLLDADWSVNAGMWMWLSCSSFF 286
L EGW+HH+ R+ A FLTRG LW+SWE G++ F + LLDADWSV AG WMW+S S+F
Sbjct: 366 LLAEGWLHHILRNITATFLTRGALWISWEAGVQHFLKYLLDADWSVCAGNWMWVSSSAFE 425
Query: 287 QQF--FHCYCPVKFGRKADPNGDFI 309
+ C P+ R+ DP G+++
Sbjct: 426 KLLDSSSCTSPIALARRLDPKGEYV 450
>sp|Q7PYI7|CRY1_ANOGA Cryptochrome-1 OS=Anopheles gambiae GN=Cry1 PE=2 SV=4
Length = 545
Score = 212 bits (539), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 119/306 (38%), Positives = 169/306 (55%), Gaps = 15/306 (4%)
Query: 19 IIEKNGGKTPLTYHQFQSIVAKM-DSPSPAEAPVTPLL-VRQATTPLRDDHDEKYGVPTL 76
+I+ NG PLTY F V + D P P AP + + L + +P
Sbjct: 146 VIQTNGDIPPLTYQMFLHTVNIIGDPPRPVGAPNFEYVEFGRVPALLASELKLCQQMPAP 205
Query: 77 EELGFDIEG---LLPPTWKGGETEAMRRLERHL--ERKAWVASFGRPKMTPQSLLASQTG 131
++ G +G + W GGET A+ L L E +A+ + P +L T
Sbjct: 206 DDFGIHYDGNARIAFQKWIGGETRALEALGARLKQEEEAFREGYYLPTQAKPEILGPATS 265
Query: 132 LSPFLRFGCLSTRLFYHDLNKLYKRIK-----KAPPPLSLHGQLLWREFFYCAATRNPNF 186
+S LRFGCLS R+FY ++ L+ +++ K P + GQL+WRE+FY + +NP++
Sbjct: 266 MSAALRFGCLSVRMFYWCVHDLFAKVQSNSQFKYPGGHHITGQLIWREYFYTMSVQNPHY 325
Query: 187 DRMLGNPICVQIPW-DVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVACFL 245
M NPIC+ IPW ++L +W +TGFP IDA M QL EGW+HH+ R+ A FL
Sbjct: 326 GEMERNPICLNIPWYKPEDDSLTRWKEGRTGFPMIDAAMRQLLAEGWLHHILRNITATFL 385
Query: 246 TRGDLWVSWEEGMKIFDELLLDADWSVNAGMWMWLSCSSFFQQF--FHCYCPVKFGRKAD 303
TRG LW+SWEEG++ F + LLDADWSV AG WMW+S S+F + C CP+ R+ D
Sbjct: 386 TRGGLWLSWEEGLQHFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSKCTCPIALARRLD 445
Query: 304 PNGDFI 309
P GD++
Sbjct: 446 PKGDYV 451
>sp|O77059|CRY1_DROME Cryptochrome-1 OS=Drosophila melanogaster GN=cry PE=1 SV=1
Length = 542
Score = 207 bits (526), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 128/332 (38%), Positives = 172/332 (51%), Gaps = 40/332 (12%)
Query: 7 KKLTLSLPSSRRIIEKNGGKTPLTYHQFQSIVAKMDSPSPAEAPV--------------- 51
+K++ +L + +IE NGG PLTY F V + P A
Sbjct: 134 EKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQIIGLPPRPTADARLEDATFVELDPEFC 193
Query: 52 -TPLLVRQATTPLRDDHDEKYGVPTLEELGFDIEGLLPPTWKGGETEAMRRLERHL--ER 108
+ L Q TP +H YG + +GF L W+GGET+A+ L+ L E+
Sbjct: 194 RSLKLFEQLPTP---EHFNVYG----DNMGF----LAKINWRGGETQALLLLDERLKVEQ 242
Query: 109 KAWVASFGRPKMTPQSLLASQTGLSPFLRFGCLSTRLFYHDLNKLYKRIK--------KA 160
A+ F P ++ S +S LRFGCLS R FY ++ L+K ++ +
Sbjct: 243 HAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQLRACVRGVQM 302
Query: 161 PPPLSLHGQLLWREFFYCAATRNPNFDRMLGNPICVQIPW-DVNMEALAKWANAQTGFPW 219
+ GQL+WRE+FY + NPN+DRM GN IC+ IPW N L W QTGFP
Sbjct: 303 TGGAHITGQLIWREYFYTMSVNNPNYDRMEGNDICLSIPWAKPNENLLQSWRLGQTGFPL 362
Query: 220 IDAIMTQLREEGWIHHLARHAVACFLTRGDLWVSWEEGMKIFDELLLDADWSVNAGMWMW 279
ID M QL EGW+HH R+ VA FLTRG LW SWE G++ F + LLDADWSV AG WMW
Sbjct: 363 IDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHFLKYLLDADWSVCAGNWMW 422
Query: 280 LSCSSFFQQFFHCY--CPVKFGRKADPNGDFI 309
+S S+F + CPV ++ DP+G +I
Sbjct: 423 VSSSAFERLLDSSLVTCPVALAKRLDPDGTYI 454
>sp|B0WRR9|CRY1_CULQU Cryptochrome-1 OS=Culex quinquefasciatus GN=cry PE=3 SV=1
Length = 499
Score = 196 bits (498), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 105/250 (42%), Positives = 146/250 (58%), Gaps = 13/250 (5%)
Query: 73 VPTLEELGFDIEG---LLPPTWKGGETEAMRRLERHL--ERKAWVASFGRPKMTPQSLLA 127
P E+ G EG + W GGE +A+ L R L E +A+ + P LA
Sbjct: 155 APVPEDFGIYYEGNADIARQRWTGGEAKALELLGRRLKQEEEAFREGYYLPTQARPDFLA 214
Query: 128 SQTGLSPFLRFGCLSTRLFYHDLNKLYKRIK-----KAPPPLSLHGQLLWREFFYCAATR 182
+ +S LRFGCLS R+FY ++ L+ R++ K P + GQL+WRE+FY +
Sbjct: 215 PPSSMSAALRFGCLSVRMFYWCVHDLFARVQANNQLKHPGGHHITGQLIWREYFYTMSVH 274
Query: 183 NPNFDRMLGNPICVQIPW-DVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHAV 241
NP++ M NPIC+ IPW + ++L +W +TGFP IDA M QL EGW+HH+ R+
Sbjct: 275 NPHYAVMELNPICLNIPWYEAKDDSLDRWKEGRTGFPLIDAAMRQLMAEGWLHHILRNIT 334
Query: 242 ACFLTRGDLWVSWEEGMKIFDELLLDADWSVNAGMWMWLSCSSFFQQF--FHCYCPVKFG 299
A FLTRG LW+SWE G++ F + LLDADWSV AG WMW+S S+F + C PV
Sbjct: 335 ATFLTRGGLWISWEAGVQHFLKYLLDADWSVCAGNWMWVSSSAFEKLLDSSSCTSPVALA 394
Query: 300 RKADPNGDFI 309
R+ DP G+++
Sbjct: 395 RRLDPKGEYV 404
>sp|P05327|PHR_SYNP6 Deoxyribodipyrimidine photo-lyase OS=Synechococcus sp. (strain ATCC
27144 / PCC 6301 / SAUG 1402/1) GN=phr PE=1 SV=4
Length = 484
Score = 114 bits (285), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 80/241 (33%), Positives = 117/241 (48%), Gaps = 12/241 (4%)
Query: 73 VPTLEELGFDIEGLLPPTWKGGETEAMRRLERHLERKAWVASFGRPKMTPQSLLASQTGL 132
+PTL++LGFD +G P + GET A+ RL+ +R +A + + P A +GL
Sbjct: 190 LPTLKQLGFDWDGGFPV--EPGETAAIARLQEFCDRA--IADYDPQRNFPAE--AGTSGL 243
Query: 133 SPFLRFGCLSTR--LFYHDLNKLYKRIKKAPPPLSL-HGQLLWREFFYCAATRNPNFDRM 189
SP L+FG + R R +A + + +L WREF+ A P+
Sbjct: 244 SPALKFGAIGIRQAWRAASAAHALSRSDEARNSIRVWQQELAWREFYQHALYHFPSLADG 303
Query: 190 LGNPICVQIPWDVNMEAL-AKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRG 248
+ Q PW+ N EAL W AQTG+P +DA M QL E GW+H+ VA FLT+
Sbjct: 304 PYRSLWQQFPWE-NREALFTAWTQAQTGYPIVDAAMRQLTETGWMHNRCWMIVASFLTK- 361
Query: 249 DLWVSWEEGMKIFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVKFGRKADPNGDF 308
DL + W G + F + L+D D + N G W W + S + + P +K D +
Sbjct: 362 DLIIDWRRGEQFFMQHLVDGDLAANNGGWQWSASSGMDPKPLRIFNPASQAKKFDATATY 421
Query: 309 I 309
I
Sbjct: 422 I 422
>sp|Q4KML2|CRYD_DANRE Cryptochrome DASH OS=Danio rerio GN=cry-dash PE=2 SV=2
Length = 520
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/292 (28%), Positives = 131/292 (44%), Gaps = 20/292 (6%)
Query: 25 GKTPLTYHQFQSIVAKMDSPSPAEAPVTPLLVRQATTPLRDDHDEKYGVPTLEELGF--- 81
G P Y QF+ V P + TP V+ + L E+ +PT + LG
Sbjct: 153 GGLPDVYTQFRKAVEAQGRVRPVLS--TPEQVKSPPSGL-----EEGPIPTFDSLGQTEP 205
Query: 82 --DIEGLLPPTWKGGETEAMRRLERHLERKAWVASFGRPKMTPQSLLASQ--TGLSPFLR 137
D P +GGETEA+ RL+ + VA++ K T ++ T SP+L
Sbjct: 206 LDDCRSAFP--CRGGETEALARLKHYFWDTNAVATY---KETRNGMIGVDFSTKFSPWLA 260
Query: 138 FGCLSTRLFYHDLNKLYKRIKKAPPPLSLHGQLLWREFFYCAATRNPNFDRMLGNPICVQ 197
GC+S R Y + K + +LLWR++F A + N +
Sbjct: 261 LGCISPRYIYEQIKKYEVERTANQSTYWVIFELLWRDYFKFVALKYGNRIFYMNGLQDKH 320
Query: 198 IPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWVSWEEG 257
+PW+ +M+ W +TG P++DA M +L G++ + R VA FLT+ DL + W G
Sbjct: 321 VPWNTDMKMFDAWKEGRTGVPFVDANMRELALTGFMSNRGRQNVASFLTK-DLGLDWRLG 379
Query: 258 MKIFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVKFGRKADPNGDFI 309
+ F+ LL+D D N G W++ + + + +K G D NGD++
Sbjct: 380 AEWFEYLLVDHDVCSNYGNWLYSAGIGNDPRENRKFNMIKQGLDYDNNGDYV 431
>sp|Q84KJ5|CRYD_ARATH Cryptochrome DASH, chloroplastic/mitochondrial OS=Arabidopsis
thaliana GN=CRYD PE=1 SV=2
Length = 569
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 81/286 (28%), Positives = 132/286 (46%), Gaps = 16/286 (5%)
Query: 28 PLTYHQF-QSIVAKMDSPSPAEAPVTPLLVRQATTPLRDDHDEKYGVPTLEELGFDIEGL 86
P Y QF +S+ AK S P++ TP DD + VPTLE+LG + + +
Sbjct: 235 PDVYTQFRKSVEAKCSIRSSTRIPLS-----LGPTPSVDDWGD---VPTLEKLGVEPQEV 286
Query: 87 LPPT-WKGGETEAMRRLERHLERKAWVASFGRPKMTPQSLLA--SQTGLSPFLRFGCLST 143
+ GGE+ + R+ + +K + + K T +L T SP+L FGC+S
Sbjct: 287 TRGMRFVGGESAGVGRVFEYFWKKDLLKVY---KETRNGMLGPDYSTKFSPWLAFGCISP 343
Query: 144 RLFYHDLNKLYKRIKKAPPPLSLHGQLLWREFFYCAATRNPNFDRMLGNPICVQIPWDVN 203
R Y ++ + K + +L+WR++F + + N LG P VQ W +
Sbjct: 344 RFIYEEVQRYEKERVANNSTYWVLFELIWRDYFRFLSIKCGNSLFHLGGPRNVQGKWSQD 403
Query: 204 MEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWVSWEEGMKIFDE 263
+ W +A+TG+P IDA M +L G++ + R V FL R D+ + W G + F+
Sbjct: 404 QKLFESWRDAKTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVR-DMGLDWRMGAEWFET 462
Query: 264 LLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVKFGRKADPNGDFI 309
LLD D N G W + + + + K + DP G+++
Sbjct: 463 CLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDPEGEYV 508
>sp|Q9HQ46|PHR_HALSA Deoxyribodipyrimidine photo-lyase OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=phr PE=3
SV=2
Length = 481
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 111/246 (45%), Gaps = 20/246 (8%)
Query: 73 VPTLEELGF-DIEGLLPPTWKGGETEAMRRLERHLERKAWVASFGRPKMTPQSLLASQTG 131
+P+++ELGF + E +P T A R L + + + P S+
Sbjct: 189 LPSVQELGFAEPEAAVP----DAGTAAARSLLDAFRESGDIYRYEDRRDYPHEEPTSR-- 242
Query: 132 LSPFLRFGCLSTRLFYH-------DLNKLYKRIKKAPPPLSLHGQLLWREFFYCAATRNP 184
LSP L+FG + R Y D + +R A + GQL WREF+ N
Sbjct: 243 LSPHLKFGTIGIRTVYEAARAAKSDADTDDERENVA----AFIGQLAWREFYAQVLYFNQ 298
Query: 185 NFDRMLGNPICVQIPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVACF 244
N I W + AL W + +TG+P +DA M QLR E ++H+ R VA F
Sbjct: 299 NVVSENFKAYEHPIEWRDDPAALQAWKDGETGYPIVDAGMRQLRAEAYMHNRVRMIVAAF 358
Query: 245 LTRGDLWVSWEEGMKIFDELLLDADWSVNAGMWMW-LSCSSFFQQFFHCYCPVKFGRKAD 303
LT+ DL V W G F E L D D + + G W W S + Q +F + P+ G + D
Sbjct: 359 LTK-DLLVDWRAGYDWFREKLADHDTANDNGGWQWAASTGTDAQPYFRVFNPMTQGERYD 417
Query: 304 PNGDFI 309
P+ D+I
Sbjct: 418 PDADYI 423
>sp|Q7NMD1|CRYD_GLOVI Cryptochrome DASH OS=Gloeobacter violaceus (strain PCC 7421) GN=cry
PE=3 SV=1
Length = 500
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 116/244 (47%), Gaps = 13/244 (5%)
Query: 73 VPTLEELGF-----DIEGLLPPTWKGGETEAMRRLERHLERKAWVASFGRPKMTPQSLLA 127
+P L +LG D +L +KGGET + RLE + +K+ + S+ K T +L
Sbjct: 189 IPQLADLGLESPVTDERAVL--QFKGGETSGLARLEEYFWQKSLLKSY---KQTRNGMLG 243
Query: 128 SQ--TGLSPFLRFGCLSTRLFYHDLNKLYKRIKKAPPPLSLHGQLLWREFFYCAATRNPN 185
+ + S +L GCLS R + + + K L +LLWR++F A ++ +
Sbjct: 244 ADYSSKFSAWLALGCLSARYIHEQVQTYETKRIKNDSTYWLIFELLWRDYFRFIAAKHGD 303
Query: 186 FDRMLGNPICVQIPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVACFL 245
+ IPW + E W QTGFP +DA M +L G++ + R VA FL
Sbjct: 304 RLFYTAGLRGLDIPWKEDWERFELWRTGQTGFPLVDANMRELAATGFMSNRGRQNVASFL 363
Query: 246 TRGDLWVSWEEGMKIFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVKFGRKADPN 305
T+ +L + W G + F+ L+D D + N G W + + + F + +K R DP+
Sbjct: 364 TK-NLGIHWHMGAEWFESRLIDYDVASNWGNWNYTAGVGNDARGFRFFNILKQARDYDPD 422
Query: 306 GDFI 309
G ++
Sbjct: 423 GAYV 426
>sp|Q04449|PHR_BACPE Deoxyribodipyrimidine photo-lyase OS=Bacillus pseudofirmus (strain
OF4) GN=phr PE=3 SV=2
Length = 479
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 108/220 (49%), Gaps = 15/220 (6%)
Query: 94 GETEAMRRLERHLERK--AWVASFGRPKMTPQSLLASQTGLSPFLRFGCLSTR-LFYHDL 150
GE A++RL+ +++ + A+ P +T S L SP+++ G +S+R ++YH L
Sbjct: 210 GEEHAIKRLQMFTKKRLSGYKANRDFPSITGTSRL------SPYIKTGAVSSRSIYYHIL 263
Query: 151 NKLYKRIKKAPPPLSLHGQLLWREFFYCAATRNPNFDRMLGNPICVQIPWDVNMEALAKW 210
N + + +L WR+F+ P+ ++ W + + L W
Sbjct: 264 NAE----ADSYSAETFLKELAWRDFYRMVHFYEPDCKDREIMEGYRELNWSHDQDDLTSW 319
Query: 211 ANAQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWVSWEEGMKIFDELLLDADW 270
+TGFP +DA M QL EGW+H+ R A FLT+ DL + W G + F+ +L+D D
Sbjct: 320 KRGETGFPIVDAGMRQLLNEGWMHNRLRMITASFLTK-DLLIDWRLGERYFERMLIDYDP 378
Query: 271 SVNAGMWMW-LSCSSFFQQFFHCYCPVKFGRKADPNGDFI 309
S N G W W S + +F + PV ++ D NG +I
Sbjct: 379 SSNIGGWQWAASVGTDAVPYFRIFNPVTQSKRFDENGTYI 418
>sp|Q9KNA8|PHR_VIBCH Deoxyribodipyrimidine photo-lyase OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=phrA PE=1
SV=1
Length = 469
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 95/186 (51%), Gaps = 11/186 (5%)
Query: 130 TGLSPFLRFGCLSTRL----FYHDLNKLYKRIKKAPPPLSLHGQLLWREFFYCAATRNPN 185
+ LSP+L G LS R YH+ + + + + A LS +L+WREF+ PN
Sbjct: 237 SSLSPYLAIGVLSARQCVARLYHE-SSMGELSEGAQVWLS---ELIWREFYQHLVAIEPN 292
Query: 186 FDRMLG-NPICVQIPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVACF 244
+ ++ W + E W +TG+P +DA M QL + GW+H+ R VA F
Sbjct: 293 LSKSRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASF 352
Query: 245 LTRGDLWVSWEEGMKIFDELLLDADWSVNAGMWMWLSCSSFFQQ-FFHCYCPVKFGRKAD 303
LT+ DL + W G + F L+D D++ N G W W + + Q +F + PV G K D
Sbjct: 353 LTK-DLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFD 411
Query: 304 PNGDFI 309
PNGDFI
Sbjct: 412 PNGDFI 417
>sp|Q55081|PHR_SYNY3 Deoxyribodipyrimidine photo-lyase OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=phrA PE=1 SV=1
Length = 488
Score = 101 bits (252), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 111/247 (44%), Gaps = 16/247 (6%)
Query: 69 EKYGVPTLEELGFDIEGLLPPTWKGGETEAMRRLERHLERKAWVASFGRPKMTPQSLLAS 128
E +P L +LGF + LP T GE A +RL+ W + G + +
Sbjct: 200 EPLAIPQLADLGFIWDQPLPLT--PGEEAAEQRLD-------WFVAHGLEEYQQNRNFPA 250
Query: 129 QTG---LSPFLRFGCLSTRLFYHDLNKLYKRIKKAPPPLSL---HGQLLWREFFYCAATR 182
G LS L+FG +S R + + +++ + S+ +L WREF+
Sbjct: 251 LDGTSQLSAALKFGVISPRTLWQTTLEAWEQSRSEEARASIETWQQELAWREFYQHCLYS 310
Query: 183 NPNFDRMLGNPICVQIPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVA 242
P + + PW+ N + W +TG+P IDA M QL + GW+H+ R VA
Sbjct: 311 FPALAQGPYRSPFQEFPWEENQDHFQAWCEGRTGYPIIDAAMAQLNQTGWMHNRCRMIVA 370
Query: 243 CFLTRGDLWVSWEEGMKIFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVKFGRKA 302
FL + DL ++W+ G F + L D D + N G W W + S + + P +K
Sbjct: 371 SFLIK-DLILNWQWGELYFMQTLYDGDLAANNGGWQWSASSGMDPKPLRIFNPHTQAQKF 429
Query: 303 DPNGDFI 309
DP G++I
Sbjct: 430 DPEGEYI 436
>sp|Q75WS4|CRYD_XENLA Cryptochrome DASH OS=Xenopus laevis GN=cry-dash PE=2 SV=1
Length = 523
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 103/219 (47%), Gaps = 6/219 (2%)
Query: 93 GGETEAMRRLERHLERKAWVASFGRPKMTPQSL--LASQTGLSPFLRFGCLSTRLFYHDL 150
GGE++A++RLE + VAS+ K T L L T +P+L GC+S R Y +
Sbjct: 218 GGESQALQRLEHYFWETNLVASY---KDTRNGLIGLDYSTKFAPWLALGCVSPRYIYEQI 274
Query: 151 NKLYKRIKKAPPPLSLHGQLLWREFFYCAATRNPNFDRMLGNPICVQIPWDVNMEALAKW 210
K K + +LLWR++F A + L IPW + + W
Sbjct: 275 GKYEKERTANQSTYWVIFELLWRDYFRFVALKYGRRIFFLRGLQDKDIPWKRDPKLFDAW 334
Query: 211 ANAQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWVSWEEGMKIFDELLLDADW 270
+TG P++DA M +L G++ + R VA FLT+ DL + W G + F+ LL+D D
Sbjct: 335 KEGRTGVPFVDANMRELAMTGFMSNRGRQNVASFLTK-DLGIDWRMGAEWFEYLLVDYDV 393
Query: 271 SVNAGMWMWLSCSSFFQQFFHCYCPVKFGRKADPNGDFI 309
N G W++ + + + +K G D GD+I
Sbjct: 394 CSNYGNWLYSAGIGNDPRENRKFNMIKQGLDYDSGGDYI 432
>sp|Q38JU2|CRYD_SOLLC Cryptochrome DASH, chloroplastic/mitochondrial OS=Solanum
lycopersicum GN=CRYD PE=3 SV=2
Length = 577
Score = 95.9 bits (237), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 107/240 (44%), Gaps = 7/240 (2%)
Query: 73 VPTLEELGFDIEGLLPP-TWKGGETEAMRRLERHLERKAWVASFGRPKMTPQSLLASQ-- 129
VP + ELG E + + GGE+ A+ R+ + +K + + K T +L +
Sbjct: 281 VPQVSELGLQQEKVSKGMNFVGGESAALGRVHDYFWKKDLLKVY---KETRNGMLGADYS 337
Query: 130 TGLSPFLRFGCLSTRLFYHDLNKLYKRIKKAPPPLSLHGQLLWREFFYCAATRNPNFDRM 189
T SP+L G LS R Y ++ + K + +L+WR++F + + N
Sbjct: 338 TKFSPWLASGSLSPRFIYEEVKRYEKERLSNDSTYWVLFELIWRDYFRFLSIKLANLLFQ 397
Query: 190 LGNPICVQIPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGD 249
G P V I W + W QTG+P IDA M +L G++ + R V FL R D
Sbjct: 398 AGGPQKVNINWSQDQTMFDAWRRGQTGYPLIDANMKELAATGYMSNRGRQIVCSFLVR-D 456
Query: 250 LWVSWEEGMKIFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVKFGRKADPNGDFI 309
+ + W G + F+ LLD D N G W + + + + K + DP G+F+
Sbjct: 457 MGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDPEGEFV 516
>sp|Q7UJB1|CRYD_RHOBA Cryptochrome DASH OS=Rhodopirellula baltica (strain SH1) GN=cry
PE=3 SV=2
Length = 488
Score = 94.4 bits (233), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 129/290 (44%), Gaps = 17/290 (5%)
Query: 25 GKTPLTYHQFQSIVAKM-DSPSPAEAPVTPLLVRQATTPLRDDHDEKYGVPTLEELGFD- 82
TP + F+ + K ++ SP E P+ T P + +PTLE LG
Sbjct: 146 ADTPELFTDFRKEIEKQCEARSPLEEPIRI----HGTLP---EEVNAGDIPTLESLGLST 198
Query: 83 --IEGLLPPTWKGGETEAMRRLERHLERKAWVASFGRPKMTPQSLL--ASQTGLSPFLRF 138
++ + GG+ A +R+E ++ + + + K T +L + SP+L
Sbjct: 199 PPLDDRCLNQFTGGQNAAQQRMEEYIWNEDRLRVY---KETRNGMLHPNDSSKFSPWLAQ 255
Query: 139 GCLSTRLFYHDLNKLYKRIKKAPPPLSLHGQLLWREFFYCAATRNPNFDRMLGNPICVQI 198
GCLS R+ + + + K + +LLWR++F + ++ G V +
Sbjct: 256 GCLSPRMIADHVRRYEEERVKNKSTYWMIFELLWRDYFRWISRKHGATLFRAGGLRGVNV 315
Query: 199 PWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWVSWEEGM 258
W + E +W + TG+P +DA M +LR G++ + R VA FLT+ +L + W G
Sbjct: 316 DWKSDRELFRRWQDGTTGYPLVDANMRELRTTGYMSNRGRQNVASFLTK-NLGIDWRWGA 374
Query: 259 KIFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVKFGRKADPNGDF 308
+ F+ L+D D + N G W + + + F + K R D G++
Sbjct: 375 RWFESQLVDYDVASNYGNWNYAAGVGNDARGFRFFNITKQSRDYDSQGEY 424
>sp|P57386|PHR_BUCAI Deoxyribodipyrimidine photo-lyase OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=phrB PE=3 SV=1
Length = 483
Score = 91.7 bits (226), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 105/226 (46%), Gaps = 22/226 (9%)
Query: 94 GETEAMRRLERHLERKAWVASFGRPKMTPQSLLASQTGLSPFLRFGCLSTRLFYHDLNKL 153
GE EA+ RL+ K + + P L + + LSP+L G +S+R + L L
Sbjct: 206 GEKEAINRLKNFCIYK--FNDYFLKRDYP--FLDATSMLSPYLSAGIISSR---YCLKVL 258
Query: 154 YKRIKKAPPPLSLHG----QLLWREFFYCAATRNPNFDRMLGNPICV---QIPWDVNMEA 206
K P + L Q+LWREF+Y P R + +I W N++
Sbjct: 259 LKTKNSLPLNVLLTSPWFDQILWREFYYHLLIGFPKISR--SESLVTWEKEIHWINNIKH 316
Query: 207 LAKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWVSWEEGMKIFDELLL 266
W TGFP IDA M QL E GW+H+ R + FL + +L ++W EG + F L+
Sbjct: 317 FNAWKEGNTGFPIIDAGMRQLNELGWMHNRLRMITSSFLVK-NLLINWREGEEHFISNLI 375
Query: 267 DADWSVNAGMWMW---LSCSSFFQQFFHCYCPVKFGRKADPNGDFI 309
D D ++N G W W + C S + + P+ + D +G+FI
Sbjct: 376 DGDLALNNGGWQWSASVGCDSV--PYIRIFNPLHQSKTFDESGNFI 419
>sp|Q651U1|CRYD_ORYSJ Cryptochrome DASH, chloroplastic/mitochondrial OS=Oryza sativa
subsp. japonica GN=CRYD PE=2 SV=1
Length = 582
Score = 91.3 bits (225), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 113/243 (46%), Gaps = 13/243 (5%)
Query: 73 VPTLEELGFDI----EGLLPPTWKGGETEAMRRLERHLERKAWVASFGRPKMTPQSLLA- 127
VPTLE LG + +G+ + GGE+ A+ R+ + +K + + K T +L
Sbjct: 291 VPTLESLGLSMTKAEKGM---HFVGGESAALGRVHEYFWKKDQLKVY---KETRNGMLGP 344
Query: 128 -SQTGLSPFLRFGCLSTRLFYHDLNKLYKRIKKAPPPLSLHGQLLWREFFYCAATRNPNF 186
T SP+L G LS R ++ + K+ + +L+WR++F + + N
Sbjct: 345 DYSTKFSPWLASGSLSPRYICEEVKRYEKQRIANDSTYWVLFELIWRDYFRFISAKYGNS 404
Query: 187 DRMLGNPICVQIPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVACFLT 246
LG P V+ W + W + +TG+P IDA M +L G++ + R V FL
Sbjct: 405 IFHLGGPRNVESKWSQDQALFESWRDGRTGYPLIDANMKELLATGFMSNRGRQIVCSFLV 464
Query: 247 RGDLWVSWEEGMKIFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVKFGRKADPNG 306
R D+ + W G + F+ LLD D + N G W + + + + K + DP+G
Sbjct: 465 R-DMGIDWRMGAEWFETCLLDYDPASNYGNWTYGAGVGNDPREDRYFSIPKQAKTYDPDG 523
Query: 307 DFI 309
+++
Sbjct: 524 EYV 526
>sp|P12768|PHR_STRGR Deoxyribodipyrimidine photo-lyase OS=Streptomyces griseus GN=phr
PE=3 SV=1
Length = 455
Score = 91.3 bits (225), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 104/229 (45%), Gaps = 16/229 (6%)
Query: 83 IEGLLPPTWKGGETEAMRRLERHLERKAWVASFGRPKMTPQSLLA--SQTGLSPFLRFGC 140
+E L P +GGE EA R+L +W+ LA + + LSP L FG
Sbjct: 189 VENLSPGLARGGE-EAGRKLV-----TSWLNGPMADYEDGHDDLAGDATSRLSPHLHFGT 242
Query: 141 LSTRLFYHDLNKLYKRIKKAPPPLSLHGQLLWREFFYCAATRNPNFDRMLGNPICVQIPW 200
+S H R K + QL WR+F + P+ P + W
Sbjct: 243 VSAAELVH-----RAREKGGLGGEAFVRQLAWRDFHHQVLADRPDASWSDYRPRHDR--W 295
Query: 201 DVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWVSWEEGMKI 260
+ + + W + TG+P +DA M QL EGW+H+ AR A FLT+ L+V W EG +
Sbjct: 296 RSDADEMHAWKSGLTGYPLVDAAMRQLAHEGWMHNRARMLAASFLTK-TLYVDWREGARH 354
Query: 261 FDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVKFGRKADPNGDFI 309
F +LL+D D + N W W++ + + PV G++ D GD++
Sbjct: 355 FLDLLVDGDVANNQLNWQWVAGTGTDTRPNRVLNPVIQGKRFDARGDYV 403
>sp|P27526|PHR_NEUCR Deoxyribodipyrimidine photo-lyase OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=phr-1 PE=3 SV=1
Length = 642
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 82/306 (26%), Positives = 119/306 (38%), Gaps = 48/306 (15%)
Query: 14 PSSRRIIEKNGGKTPLTYHQFQSIVAKMDSPSPAEAPVTPLLVRQATTPLRDDHDEKYGV 73
P I EK G P T + +++ A P P R LRDD +Y
Sbjct: 308 PECLEIYEKPGPNPPGTKEKHENLFA-------CSIPEAPEGKR-----LRDDEKARYHS 355
Query: 74 PTLEELGFDIEGLLPPTWKGGETEAMRRLERHLERKAWVASFGRPKMTPQSLLASQTGLS 133
W GE EA++RLE+ + + + + P + + LS
Sbjct: 356 ----------------LWPAGEHEALKRLEKFCDEA--IGKYAERRNIPA--MQGTSNLS 395
Query: 134 PFLRFGCLSTRLFYH---DLNKLYKRIKKAPPPLSLHGQLLWREFFYCAATR------NP 184
G LS R D N K ++ WR+F+ N
Sbjct: 396 VHFASGTLSARTAIRTARDRNNTKKLNGGNEGIQRWISEVAWRDFYKHVLVHWPYVCMNK 455
Query: 185 NFDRMLGNPICVQIPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVACF 244
F P I W N++ W +TGFP IDA M Q+ G++H+ R VA F
Sbjct: 456 PF-----KPTYSNIEWSYNVDHFHAWTQGRTGFPIIDAAMRQVLSTGYMHNRLRMIVASF 510
Query: 245 LTRGDLWVSWEEGMKIFDELLLDADWSVNAGMWMWLSCSSFF-QQFFHCYCPVKFGRKAD 303
L + DL V W G + F E L+D D++ N G W + + Q +F + P+ K D
Sbjct: 511 LAK-DLLVDWRMGERYFMEHLIDGDFASNNGGWGFAASVGVDPQPYFRVFNPLLQSEKFD 569
Query: 304 PNGDFI 309
P+GD+I
Sbjct: 570 PDGDYI 575
>sp|P77967|CRYD_SYNY3 Cryptochrome DASH OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=cry PE=1 SV=2
Length = 489
Score = 89.4 bits (220), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 110/236 (46%), Gaps = 12/236 (5%)
Query: 78 ELGFDIEGLLPPTWKGGETEAMRRLERHLERKAWVASFGRPKMTPQSLLASQ--TGLSPF 135
++ FD +L ++GGET + RL+ + + + K T ++ + + SP+
Sbjct: 201 QINFDHRSVL--AFQGGETAGLARLQDYFWHGDRLKDY---KETRNGMVGADYSSKFSPW 255
Query: 136 LRFGCLSTRLFYHDLNKLYKRIKKAPPPLSLHGQLLWREFFYCAATRNPN--FDRMLGNP 193
L GCLS R Y ++ + + L +LLWR+FF A + N F+R G
Sbjct: 256 LALGCLSPRFIYQEVKRYEQERVSNDSTHWLIFELLWRDFFRFVAQKYGNKLFNR--GGL 313
Query: 194 ICVQIPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWVS 253
+ PW + W + QTG+P +DA M +L G++ + R VA FL + +L +
Sbjct: 314 LNKNFPWQEDQVRFELWRSGQTGYPLVDANMRELNLTGFMSNRGRQNVASFLCK-NLGID 372
Query: 254 WEEGMKIFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVKFGRKADPNGDFI 309
W G + F+ L+D D N G W + + + F + K ++ DP G ++
Sbjct: 373 WRWGAEWFESCLIDYDVCSNWGNWNYTAGIGNDARDFRYFNIPKQSQQYDPQGTYL 428
>sp|P00914|PHR_ECOLI Deoxyribodipyrimidine photo-lyase OS=Escherichia coli (strain K12)
GN=phrB PE=1 SV=1
Length = 472
Score = 89.4 bits (220), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 85/190 (44%), Gaps = 23/190 (12%)
Query: 132 LSPFLRFGCLSTRLFYHDLNKLYKRIKKAPPPLSLHG--------QLLWREFFYCAATRN 183
LS L G LS R H L A P +L G +L+WREF+ T +
Sbjct: 238 LSASLATGGLSPRQCLHRL--------LAEQPQALDGGAGSVWLNELIWREFYRHLITYH 289
Query: 184 PNFDRMLGNPICV---QIPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHA 240
P+ + P ++ W N L W +TG+P +DA M QL GW+H+ R
Sbjct: 290 PSLCKH--RPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMI 347
Query: 241 VACFLTRGDLWVSWEEGMKIFDELLLDADWSVNAGMWMW-LSCSSFFQQFFHCYCPVKFG 299
A FL + DL + W EG + F L+D D + N G W W S + +F + P G
Sbjct: 348 TASFLVK-DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQG 406
Query: 300 RKADPNGDFI 309
K D G+FI
Sbjct: 407 EKFDHEGEFI 416
>sp|Q89AJ9|PHR_BUCBP Deoxyribodipyrimidine photo-lyase OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=phrB PE=3 SV=1
Length = 478
Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 88/190 (46%), Gaps = 11/190 (5%)
Query: 126 LASQTGLSPFLRFGCLSTRLFYHDLNKLYKRIKKAPPPLSLHGQLLWREFFYCAATRNPN 185
L S + LS L G +S R L K Y I +LLWREF+ PN
Sbjct: 236 LNSTSMLSAHLSIGVISPRQCVTLLFKEYPDIIHKLEECKWINELLWREFYQHLLYFYPN 295
Query: 186 FDRMLGNPICV-----QIPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHA 240
+G + +I WD N+ L W TG+P IDA M QL++ GWI + R
Sbjct: 296 ----IGQNQSLYHWENRIKWDNNLYYLNLWKQGNTGYPIIDAGMRQLKQLGWISNRLRMI 351
Query: 241 VACFLTRGDLWVSWEEGMKIFDELLLDADWSVNAGMWMWL-SCSSFFQQFFHCYCPVKFG 299
A FL + +L + W +G + F L+D D++ N G W W+ S + +F + P+
Sbjct: 352 TASFLVK-NLLIDWRKGEEYFMSQLIDGDFASNNGNWQWIASVGTDSMPYFRIFNPMLQS 410
Query: 300 RKADPNGDFI 309
+K D N FI
Sbjct: 411 KKFDINAKFI 420
>sp|Q3IPX9|CRYD_NATPD Cryptochrome DASH OS=Natronomonas pharaonis (strain DSM 2160 / ATCC
35678) GN=cry PE=3 SV=1
Length = 474
Score = 84.3 bits (207), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 99/223 (44%), Gaps = 31/223 (13%)
Query: 73 VPTLEELGFDIEGLLPPT-------WKGGETEAMRRLERHLERKAWVASFGRP-KMTPQS 124
VPT+E LG PPT ++GGE+ RR+E ++ W R K T
Sbjct: 187 VPTVESLGVS----EPPTDDRAVLEFEGGESAGKRRVESYI----WEGDHLREYKTTRNG 238
Query: 125 LLASQ--TGLSPFLRFGCLSTRLFYHDLNKLYKRIKKAPPPLSLHGQLLWREFF------ 176
LL + + SP+L GCLS R + ++ + L +L WR+FF
Sbjct: 239 LLGADYSSKFSPWLAAGCLSPRWLHREVERYEDERVANEDTYWLVFELAWRDFFQFQFEK 298
Query: 177 YCAATRNPNFDRMLGNPICVQIPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHL 236
Y A P G I WD + +WA+ +TG P++DA M +L G++ +
Sbjct: 299 YGATFFKP------GGIRERNIDWDRDRALFERWADGETGVPFVDANMRELNRTGYMSNR 352
Query: 237 ARHAVACFLTRGDLWVSWEEGMKIFDELLLDADWSVNAGMWMW 279
R VA FL G L + W G F+ L+D D + N G W +
Sbjct: 353 GRQNVASFLA-GVLGIDWRWGAAYFEARLIDYDVASNWGNWAY 394
>sp|P25078|PHR_SALTY Deoxyribodipyrimidine photo-lyase OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=phrB PE=1 SV=2
Length = 473
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 81/185 (43%), Gaps = 13/185 (7%)
Query: 132 LSPFLRFGCLSTRLFYHDLNKLYKRIKKAPPPLSLHGQLLWREFF------YCAATRNPN 185
LS L G LS R H L + P +L+WREF+ Y A ++
Sbjct: 239 LSASLATGGLSPRQCLHRLLAEQPQALDGGPGSVWLNELIWREFYRHLMTWYPALCKHQP 298
Query: 186 FDRMLGNPICVQIPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVACFL 245
F R ++ W N W +TG+P +DA M QL GW+H+ R A FL
Sbjct: 299 FIRW-----TKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFL 353
Query: 246 TRGDLWVSWEEGMKIFDELLLDADWSVNAGMWMW-LSCSSFFQQFFHCYCPVKFGRKADP 304
+ DL + W G + F L+D D + N G W W S + +F + P G + D
Sbjct: 354 VK-DLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDR 412
Query: 305 NGDFI 309
+G+FI
Sbjct: 413 DGEFI 417
>sp|Q87JP5|CRYD_VIBPA Cryptochrome DASH OS=Vibrio parahaemolyticus serotype O3:K6 (strain
RIMD 2210633) GN=cry PE=3 SV=1
Length = 445
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 82/310 (26%), Positives = 125/310 (40%), Gaps = 41/310 (13%)
Query: 6 EKKLTLSLPSSRRIIEKNGGKTPLTYHQFQSIVAKMDSPSPAEAPVT-PLLVRQATTPLR 64
E KL +LP P T+ QF+ V +D P +AP P + + A
Sbjct: 140 ESKLPFTLPD-----------LPETFTQFRKCVEGIDIAHPIDAPSRLPPMPKGAQ---- 184
Query: 65 DDHDEKYGVPTLEELGFDIEGLLPPTWKGGETEAMRRLERHLERKAWVASFGRPKMTPQS 124
+PTL FD L GGE + R+ + +AS +
Sbjct: 185 --------LPTLSSFYFDESALF----SGGEWSGLAHCRRYF--FSGLASSYKETRNGLD 230
Query: 125 LLASQTGLSPFLRFGCLSTRLFYHDLNKLYKRIKKAPPPLS-LHGQLLWREFFY----CA 179
+A T SP+L GC+S R+ H + K Y++ + A ++ +LLWRE+FY C
Sbjct: 231 GMAYSTKFSPWLALGCVSPRMI-HAMLKQYEQTQGANDSTYWIYFELLWREYFYWYARCY 289
Query: 180 ATRNPNFDRMLGNPICVQIPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARH 239
R F + P +W N T +P ++A M QL G++ + R
Sbjct: 290 QQRLFRFGGIRNQPPLTSF----YAHRFQQWKNGTTPYPIVNACMHQLNHTGYMSNRGRQ 345
Query: 240 AVACFLTRGDLWVSWEEGMKIFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVKFG 299
VA L +L + W G F+ L+D D N G W +L+ + + K
Sbjct: 346 LVASCLVH-ELGLDWRYGAAYFETQLIDYDVGSNWGNWQYLAGVGADPRGSRQFNLEKQT 404
Query: 300 RKADPNGDFI 309
+ DPN +FI
Sbjct: 405 QMYDPNHEFI 414
>sp|Q5IFN2|CRYD_OSTTA Cryptochrome DASH, chloroplastic/mitochondrial OS=Ostreococcus
tauri GN=Ot01g06320 PE=3 SV=1
Length = 546
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 100/221 (45%), Gaps = 8/221 (3%)
Query: 91 WKGGETEAMRRLERHLERKAWVASFGRPKMTPQSLLASQ--TGLSPFLRFGCLSTRLFYH 148
+KGGE+ A+ R++ +L +A++ T +L T L+P+L GC+S R
Sbjct: 243 FKGGESNALARVKYYLWESDRLATYFE---TRNGMLGGDYSTKLAPWLALGCVSPRHVVS 299
Query: 149 DLNKLYKRIKKAPPPLSLHGQLLWREFFYCAATRNPNFDRMLGNPICVQIPWDVNMEALA 208
++ + + + +L+WR+FF A ++ N L + W + + L
Sbjct: 300 EIRRYESERVENKSTYWVIFELIWRDFFKFFALKHGNKIFHLDGTAGRRASWKRDEKILK 359
Query: 209 KWANAQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWVSWEEGMKIFDELLLDA 268
W TG+P IDA M +L G++ + R VA +L D + W G F+ LLD
Sbjct: 360 AWKTGTTGYPLIDANMRELAATGFMSNRGRQNVASWLAL-DAGIDWRHGADWFEHHLLDY 418
Query: 269 DWSVNAGMWMWLSCSSFFQQFFHCYCPVKFGRKADPNGDFI 309
D + N G W + + + + K + DP G++I
Sbjct: 419 DTASNWG--NWCAAAGMTGGRINRFNIAKQTKDYDPAGEYI 457
>sp|Q5QXE0|CRYD_IDILO Cryptochrome DASH OS=Idiomarina loihiensis (strain ATCC BAA-735 /
DSM 15497 / L2-TR) GN=cry PE=3 SV=1
Length = 449
Score = 75.9 bits (185), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 76/287 (26%), Positives = 119/287 (41%), Gaps = 26/287 (9%)
Query: 28 PLTYHQFQSIVAKMDSPSPAEAPVT--PLLVRQATTPLRDDHDEKYGVPTLEELGFDIEG 85
P T+ QF+ V + S + + PV P L + + P + TL EL D
Sbjct: 161 PETFSQFRKKVEPL-SRNFSVQPVNALPSLPKNISYP-------GFKAETLNELASD--- 209
Query: 86 LLPPTWKGGETEAMRRLERHLERKAWVASFGRPKMTPQSL--LASQTGLSPFLRFGCLST 143
++GGE A+ L + + S G K T +L +S T SP+L GCLS
Sbjct: 210 ----DFEGGERAALTHLTSYFSGE----SAGTYKQTRNALDDFSSSTKFSPWLAQGCLSV 261
Query: 144 RLFYHDLNKLYKRIKKAPPPLSLHGQLLWREFFYCAATRNPNFDRMLGNPICVQIPWDVN 203
R L + + +LLWRE+F+ A ++
Sbjct: 262 RQIMAALRAYETEFGENESSYWISFELLWREYFFWYALKHGKRLFAFSGLSGKSPKTSFY 321
Query: 204 MEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVA-CFLTRGDLWVSWEEGMKIFD 262
E KW + T +P ++A M QL G++ + R VA CF+ +L + W G F+
Sbjct: 322 SERFQKWCSGNTPYPIVNACMKQLNATGYMSNRGRQLVASCFVH--ELSLDWRYGAAYFE 379
Query: 263 ELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVKFGRKADPNGDFI 309
+ L+D D S N G W +L+ + + K + DP+ +FI
Sbjct: 380 QQLIDYDVSSNWGNWQYLAGVGADPRGHRQFNLEKQTERYDPDNEFI 426
>sp|P05066|PHR_YEAST Deoxyribodipyrimidine photo-lyase, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=PHR1 PE=1
SV=1
Length = 565
Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 102/226 (45%), Gaps = 17/226 (7%)
Query: 94 GETEAMRRLERHLERKAWVASFGRPKMTPQSLLASQTGLSPFLRFGCLSTRLFYHDLNK- 152
E A+ RL+ L K+ + + K L +GLS ++ G +STRL + +
Sbjct: 307 SEEAALSRLKDFLGTKS--SKYNNEK--DMLYLGGTSGLSVYITTGRISTRLIVNQAFQS 362
Query: 153 -----LYKRIKKAPPPLSLHGQLLWREFFYCAATRNPNFDRMLGNPI---CVQIPWDVNM 204
+ K +K + ++ WR+F+ P +G P + I W+ N
Sbjct: 363 CNGQIMSKALKDNSSTQNFIKEVAWRDFYRHCMCNWPYTS--MGMPYRLDTLDIKWENNP 420
Query: 205 EALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWVSWEEGMKIFDEL 264
A KW TG P +DAIM +L G+I++ +R A FL++ +L + W G + F +
Sbjct: 421 VAFEKWCTGNTGIPIVDAIMRKLLYTGYINNRSRMITASFLSK-NLLIDWRWGERWFMKH 479
Query: 265 LLDADWSVNAGMWMWLSCSSFFQQ-FFHCYCPVKFGRKADPNGDFI 309
L+D D S N G W + S + Q +F + +K DP F+
Sbjct: 480 LIDGDSSSNVGGWGFCSSTGIDAQPYFRVFNMDIQAKKYDPQMIFV 525
>sp|Q96524|CRY2_ARATH Cryptochrome-2 OS=Arabidopsis thaliana GN=CRY2 PE=1 SV=2
Length = 612
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 113/254 (44%), Gaps = 30/254 (11%)
Query: 75 TLEELGFDIEG------LLPPTWKGGETEAMRRLERHLERKAWVASFGRPKMTPQSLLAS 128
++EELG + E LL W G + A + L +E++ K + + + S
Sbjct: 188 SIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQL----IDYAKNSKKVVGNS 243
Query: 129 QTGLSPFLRFGCLSTRLFYHDLNK---LYKRIKKA----PPPLSLHGQLLWREF--FYCA 179
+ LSP+L FG +S R + ++ R K + L L G L RE+ + C
Sbjct: 244 TSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGL-REYSRYICF 302
Query: 180 ATRNPNFDRMLGNPICVQI---PWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHL 236
NF + + PWD +++ W +TG+P +DA M +L GW+H+
Sbjct: 303 -----NFPFTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNR 357
Query: 237 ARHAVACFLTRGDLWVSWEEGMKIFDELLLDADWSVNAGMWMWLSCS-SFFQQFFHCYCP 295
R V+ F + L + W+ GMK F + LLDAD + W ++S S + P
Sbjct: 358 IRVIVSSFAVKF-LLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNP 416
Query: 296 VKFGRKADPNGDFI 309
G K DP G++I
Sbjct: 417 ALQGAKYDPEGEYI 430
>sp|P40115|CRY1_SINAL Cryptochrome-1 OS=Sinapis alba GN=PHR1 PE=2 SV=1
Length = 501
Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 109/257 (42%), Gaps = 36/257 (14%)
Query: 75 TLEELGFDIEG------LLPPTWKGGETEAMRRLERHLERKAWVASFGRPKMTPQSLLAS 128
++EELG + E LL W G + A + L +E++ K + + + S
Sbjct: 187 SVEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQL----IDYAKNSKKVVGNS 242
Query: 129 QTGLSPFLRFGCLSTRLFYHDLNKLYKRIKKAPPPLSLHGQLLWREFFYCAATRNPNFDR 188
+ LSP+L FG +S R + R+K+ +G+ + ++ R
Sbjct: 243 TSLLSPYLHFGEISVRRVFQ-----CARMKQIIWARDKNGEGEESADLFLRGIGLRDYSR 297
Query: 189 MLGNPICVQIP---------------WDVNMEALAKWANAQTGFPWIDAIMTQLREEGWI 233
+ IC P WD +++ W +TG+P +DA M +L GW+
Sbjct: 298 I----ICFNFPFTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWM 353
Query: 234 HHLARHAVACFLTRGDLWVSWEEGMKIFDELLLDADWSVNAGMWMWLSCS-SFFQQFFHC 292
H+ R V+ F + L + W+ GMK F + LLDAD + W ++S S +
Sbjct: 354 HNRIRVIVSSFAVKF-LLLPWKWGMKYFWDTLLDADLECDIIGWQYISGSLPDGHELDRL 412
Query: 293 YCPVKFGRKADPNGDFI 309
P G K DP G++I
Sbjct: 413 DNPAIQGAKYDPEGEYI 429
>sp|P61496|PHR_THET2 Deoxyribodipyrimidine photo-lyase OS=Thermus thermophilus (strain
HB27 / ATCC BAA-163 / DSM 7039) GN=phr PE=1 SV=1
Length = 420
Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 75/179 (41%), Gaps = 7/179 (3%)
Query: 132 LSPFLRFGCLSTRLFYHDLNKLYKRIKKAPPPLSLHGQLLWREFFYCAATRNPNFDRMLG 191
LSP+ G LS RL + + + +LLWR+F Y P
Sbjct: 212 LSPYFALGVLSPRLAAWEAERRGGEGAR-----KWVAELLWRDFSYHLLYHFPWMAERPL 266
Query: 192 NPICVQIPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLW 251
+P +PW + W +TG P +DA M +L G++ + AR A F + L
Sbjct: 267 DPRFQALPWQEDEALFRAWYEGRTGVPLVDAAMRELHATGFLSNRARMNAAQFAVK-HLL 325
Query: 252 VSWEEGMKIFDELLLDADWSVNAGMWMWLSCSSF-FQQFFHCYCPVKFGRKADPNGDFI 309
+ W+ + F LLLD D +VN W W +F + PV G + DP G ++
Sbjct: 326 LPWKRCEEAFRHLLLDGDRAVNLQGWQWAGGLGVDAAPYFRVFNPVLQGERHDPEGRWL 384
>sp|P61497|PHR_THET8 Deoxyribodipyrimidine photo-lyase OS=Thermus thermophilus (strain
HB8 / ATCC 27634 / DSM 579) GN=phr PE=1 SV=1
Length = 420
Score = 71.6 bits (174), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 74/179 (41%), Gaps = 7/179 (3%)
Query: 132 LSPFLRFGCLSTRLFYHDLNKLYKRIKKAPPPLSLHGQLLWREFFYCAATRNPNFDRMLG 191
LSP+ G LS RL + + + +LLWR+F Y P
Sbjct: 212 LSPYFALGVLSPRLAAWEAER-----RGGEGARKWVAELLWRDFSYHLLYHFPWMAERPL 266
Query: 192 NPICVQIPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLW 251
+P PW + W +TG P +DA M +L G++ + AR A F + L
Sbjct: 267 DPRFQAFPWQEDEALFQAWYEGKTGVPLVDAAMRELHATGFLSNRARMNAAQFAVK-HLL 325
Query: 252 VSWEEGMKIFDELLLDADWSVNAGMWMWLSCSSF-FQQFFHCYCPVKFGRKADPNGDFI 309
+ W+ + F LLLD D +VN W W +F + PV G + DP G ++
Sbjct: 326 LPWKRCEEAFRHLLLDGDRAVNLQGWQWAGGLGVDAAPYFRVFNPVLQGERHDPEGRWL 384
>sp|Q9KR33|CRYD_VIBCH Cryptochrome DASH OS=Vibrio cholerae serotype O1 (strain ATCC 39315
/ El Tor Inaba N16961) GN=cry1 PE=1 SV=1
Length = 461
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 82/183 (44%), Gaps = 7/183 (3%)
Query: 130 TGLSPFLRFGCLSTRLFYHDLNKLYKRIKKAPPPLS-LHGQLLWREFFYCAATR-NPNFD 187
T SP+L G +S + Y L + Y+ + A + +LLWRE+FY A R
Sbjct: 236 TKFSPWLALGAVSPKTIYAMLQR-YEAVHGANDSTYWIFFELLWREYFYWYARRYGAKLF 294
Query: 188 RMLGNPICVQIPW-DVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVACFLT 246
R G I + P + +W + +T FP ++A M QL + G++ + R VA L
Sbjct: 295 RFSG--IGEKKPLTSFYAQRFLQWKHGETPFPIVNACMRQLNQTGYMSNRGRQLVASCLV 352
Query: 247 RGDLWVSWEEGMKIFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVKFGRKADPNG 306
+L + W G F+ L+D D N G W +L+ + + K DP G
Sbjct: 353 H-ELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADPRGSRQFNLEKQAHTYDPKG 411
Query: 307 DFI 309
+F+
Sbjct: 412 EFV 414
>sp|Q43125|CRY1_ARATH Cryptochrome-1 OS=Arabidopsis thaliana GN=CRY1 PE=1 SV=2
Length = 681
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 86/195 (44%), Gaps = 18/195 (9%)
Query: 127 ASQTGLSPFLRFGCLSTRLFYHDLNKLYKRIKKAP--PPLSLHGQLLWREFFYCAATRNP 184
A+ + LSP L FG +S R +H + RIK+ + G+ F R
Sbjct: 245 ATTSFLSPHLHFGEVSVRKVFHLV-----RIKQVAWANEGNEAGEESVNLFLKSIGLREY 299
Query: 185 NFDRMLGNPICVQ---------IPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHH 235
+ +P + PW V+ W +TG+P +DA M +L GW+H
Sbjct: 300 SRYISFNHPYSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHD 359
Query: 236 LARHAVACFLTRGDLWVSWEEGMKIFDELLLDADWSVNAGMWMWLSCS-SFFQQFFHCYC 294
R V+ F + L + W GMK F + LLDAD +A W +++ + ++F
Sbjct: 360 RIRVVVSSFFVKV-LQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDN 418
Query: 295 PVKFGRKADPNGDFI 309
P G K DPNG+++
Sbjct: 419 PQFEGYKFDPNGEYV 433
>sp|Q4I1Q6|CRYD_GIBZE Putative cryptochrome DASH OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=FGSG_08852 PE=3
SV=1
Length = 678
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 94/229 (41%), Gaps = 40/229 (17%)
Query: 91 WKGGETEAMRRLERHLERKAWVASFGRPKMTPQSLLASQ--TGLSPFLRFGCLSTRLFYH 148
+KGGET A RL HL + + ++ + T LL ++ T LS FL G ++ R +
Sbjct: 242 FKGGETPAWDRL-YHLIKSGAMTTY---QETRNGLLGTEYSTKLSAFLAMGTITARSIHA 297
Query: 149 DLNKL-------YKR-----IKKAPPPLSLHGQLLWREFFYCAA----TRNPNFDRMLGN 192
+L K Y R + ++ +LLWR++ TR D G
Sbjct: 298 ELVKFEDGSEESYSRGFGFGKGENEGTRAVRFELLWRDYMRLCTFKFRTRLFKIDGFKGA 357
Query: 193 PICVQIPWDVNMEALA----------------KWANAQTGFPWIDAIMTQLREEGWIHHL 236
W + E A +W TG +DA +L+ G+ +
Sbjct: 358 SGNYTKKWLTDREEDAEPDQNPTPAQVKDMIDRWIRGTTGMGLVDASQRELQLTGYTSNR 417
Query: 237 ARHAVACFLTRGDLWVSWEEGMKIFDELLLDADWSVNAGMWMW-LSCSS 284
AR VA +LT+ L + W G + +++ L+D D N G W + SC +
Sbjct: 418 ARQNVASYLTKS-LGIDWRLGAEYYEQSLIDYDTHSNWGNWQYQASCGN 465
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.455
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 129,540,550
Number of Sequences: 539616
Number of extensions: 5659677
Number of successful extensions: 11083
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 10924
Number of HSP's gapped (non-prelim): 64
length of query: 309
length of database: 191,569,459
effective HSP length: 117
effective length of query: 192
effective length of database: 128,434,387
effective search space: 24659402304
effective search space used: 24659402304
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)