Query psy4171
Match_columns 309
No_of_seqs 174 out of 1432
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 18:42:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4171.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4171hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tvs_A Cryptochrome-1; circadi 100.0 6.6E-83 2.3E-87 632.7 24.7 309 1-309 127-453 (538)
2 3fy4_A 6-4 photolyase; DNA rep 100.0 1.2E-82 4E-87 630.0 23.0 304 1-309 131-438 (537)
3 2wq7_A RE11660P; lyase-DNA com 100.0 1.8E-82 6.3E-87 631.8 21.0 305 2-309 153-462 (543)
4 1np7_A DNA photolyase; protein 100.0 2.1E-80 7.1E-85 610.7 23.3 296 2-309 129-428 (489)
5 1u3d_A Cryptochrome 1 apoprote 100.0 1.1E-80 3.6E-85 615.4 20.1 291 1-309 129-433 (509)
6 1owl_A Photolyase, deoxyribodi 100.0 1.5E-80 5.1E-85 610.7 20.8 297 1-309 120-422 (484)
7 1dnp_A DNA photolyase; DNA rep 100.0 5.2E-80 1.8E-84 604.6 19.5 288 3-309 123-415 (471)
8 2j07_A Deoxyribodipyrimidine p 100.0 1.3E-78 4.6E-83 587.1 19.3 271 2-309 113-384 (420)
9 2j4d_A Cryptochrome 3, cryptoc 100.0 3.2E-78 1.1E-82 599.1 20.8 294 3-309 167-464 (525)
10 2e0i_A 432AA long hypothetical 100.0 2.6E-77 9E-82 580.3 18.3 263 1-309 117-381 (440)
11 2xry_A Deoxyribodipyrimidine p 100.0 4.2E-68 1.4E-72 522.3 3.9 291 1-309 152-476 (482)
12 3umv_A Deoxyribodipyrimidine p 100.0 1.8E-65 6.2E-70 504.3 2.8 281 1-309 159-479 (506)
13 3zxs_A Cryptochrome B, rscryb; 100.0 6.3E-59 2.1E-63 454.0 10.4 289 2-305 131-456 (522)
14 3lgb_A DNA primase large subun 45.6 44 0.0015 28.0 6.2 48 217-266 19-66 (194)
15 2drn_C 24-residues peptide fro 25.1 30 0.001 18.9 1.2 16 217-232 8-23 (26)
16 2dkl_A Trinucleotide repeat co 24.6 1.5E+02 0.0051 21.2 5.3 50 215-270 15-65 (85)
No 1
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=100.00 E-value=6.6e-83 Score=632.75 Aligned_cols=309 Identities=39% Similarity=0.711 Sum_probs=256.5
Q ss_pred CCceEEEecCCcccCCCccccccCccccccccccHHhHHhCCCCCCCCCCCCcccccccCCCCCCC--CCccCCCCCccc
Q psy4171 1 MSSSIEKKLTLSLPSSRRIIEKNGGKTPLTYHQFQSIVAKMDSPSPAEAPVTPLLVRQATTPLRDD--HDEKYGVPTLEE 78 (309)
Q Consensus 1 ~~~~~~~~~~~~L~~p~~i~~~~~g~~p~~fs~F~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~--~~~~~~iP~l~~ 78 (309)
.||.+++|++++|++|++|.+++++.+|.||++|+++++++..++.|.+.+....+.....+.... ......+|++++
T Consensus 127 ~gi~~~~~~~~~l~~p~~v~~~~~~~~~~~f~~f~~~~~~~~~~~~p~~~p~~~~~~~~~~p~~~~~~~~~~~~~p~l~~ 206 (538)
T 3tvs_A 127 LNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQIIGLPPRPTADARLEDATFVELDPEFCRSLKLFEQLPTPEH 206 (538)
T ss_dssp SSCCCCEECCSSSSCTTHHHHHTTTSCCCSHHHHHHHHTTTTCSSCCCCCCCCCCCCCCCCCTTTTTTSCCBSSCCCTTT
T ss_pred CCceEEEecCCEEEChhhcccCCCCCCCcchHHHHHHHHhhCCCCCCCCCccccccccccCCcccccccccccCCCCHHH
Confidence 489999999999999999988877889999999999998876554444333211111111111110 001135788888
Q ss_pred cCCCcCCC---CCCCCCccHHHHHHHHHHHHh--hCccccccCCCCCCCCCCCCCCCCCchhhccCcCcHHHHHHHHHHH
Q psy4171 79 LGFDIEGL---LPPTWKGGETEAMRRLERHLE--RKAWVASFGRPKMTPQSLLASQTGLSPFLRFGCLSTRLFYHDLNKL 153 (309)
Q Consensus 79 lg~~~~~~---~~~~~~gGe~~A~~~L~~fl~--~~~~l~~Y~~~r~~~~~~~~~tS~LSpyL~~G~iS~r~v~~~~~~~ 153 (309)
+|+..... ....|+|||++|+++|++|+. .+.++.+|++.|+.+.+..++||+|||||++||||||+|++++.+.
T Consensus 207 l~~~~~~~~~~~~~~~~~Ge~~A~~~L~~Fl~~~~~~~l~~y~~~r~~~~~~~~~tS~LSpyL~~G~lS~r~v~~~~~~~ 286 (538)
T 3tvs_A 207 FNVYGDNMGFLAKINWRGGETQALLLLDERLKVEQHAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDL 286 (538)
T ss_dssp TSCCCCCSSCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHSCCCCTTTTSCCSSCCSCCCHHHHHTTSSCHHHHHHHHHHH
T ss_pred cCCCcccccccccCCCCCCHHHHHHHHHHHHHhhhhhhHhhhcccccCcccccCCCcCCCHHHhCCCcCHHHHHHHHHHH
Confidence 88865432 235699999999999999994 3223789999999886445789999999999999999999999876
Q ss_pred HHhhcc--------CCCchhHHHHHHHHHHHHHHHHhCCcccccCCCCcCCCCCCCC-chHHHHHHhcCCCCcHHHHHHH
Q psy4171 154 YKRIKK--------APPPLSLHGQLLWREFFYCAATRNPNFDRMLGNPICVQIPWDV-NMEALAKWANAQTGFPWIDAIM 224 (309)
Q Consensus 154 ~~~~~~--------~~~~~~~~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~w~~-~~~~~~~w~~G~TG~p~vDA~m 224 (309)
...... ..+.++|++||+|||||+++++++|.+...++++.+.+++|+. |++.|++|++|+||||||||||
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~f~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~w~~~~~~~~~aW~~G~TG~P~VDA~M 366 (538)
T 3tvs_A 287 FKNVQLRACVRGVQMTGGAHITGQLIWREYFYTMSVNNPNYDRMEGNDICLSIPWAKPNENLLQSWRLGQTGFPLIDGAM 366 (538)
T ss_dssp TCSSSCCCCCSSSCCTTTTTTHHHHHHHHHHHHHHHHSSCTTSSSSCSSCCCCCCCCCCSSHHHHHHTTCSSCHHHHHHH
T ss_pred HhhhcccccccccccchHHHHHHHHHHHHHHHHHHHhCcchhhccCChhhhcCCccccCHHHHHHHHhCCCCCHHHHHHH
Confidence 532111 1345899999999999999999999999889999999999988 8899999999999999999999
Q ss_pred HHHHHhcccchHHHHHHHHHHhhccCCCCchHHHHHHHHhccccccCCcccchhhhcccCC--CCccccccChhhhhhhc
Q psy4171 225 TQLREEGWIHHLARHAVACFLTRGDLWVSWEEGMKIFDELLLDADWSVNAGMWMWLSCSSF--FQQFFHCYCPVKFGRKA 302 (309)
Q Consensus 225 rqL~~tG~mhnr~R~~vasfl~~~~l~idW~~g~~~f~~~liD~d~a~n~g~wqw~a~~~~--~~~~~r~~np~~q~~~~ 302 (309)
|||++|||||||+|||||||||||+|+||||.|++||+++|||||+|+|+|||||+||++. ++||||||||++|++||
T Consensus 367 rqL~~tG~mHnr~Rm~vAsfl~k~~L~idWr~G~~~F~~~llD~D~a~n~g~Wqw~ag~g~Dd~~pyfRifNP~~Q~~kf 446 (538)
T 3tvs_A 367 RQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRL 446 (538)
T ss_dssp HHHHHTCCCCHHHHHHHHHHHTTTTTCCCHHHHHHHHHHHCTTCCHHHHHHHHHHHSCCCSSCCCTHHHHCSTTTHHHHS
T ss_pred HHHHHhCCccHHHHHHHHHHHHHhhhCCCchHHHHHHHHHcccCchhhchhhhhhhhcCCCcCCCCceeeeCHHHHHHHh
Confidence 9999999999999999999999768999999999999999999999999999999998664 58999999999999999
Q ss_pred CCCCCCC
Q psy4171 303 DPNGDFI 309 (309)
Q Consensus 303 Dp~g~yi 309 (309)
||+|+||
T Consensus 447 Dp~G~YI 453 (538)
T 3tvs_A 447 DPDGTYI 453 (538)
T ss_dssp CTTCTTG
T ss_pred CCCcchH
Confidence 9999998
No 2
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=100.00 E-value=1.2e-82 Score=630.03 Aligned_cols=304 Identities=48% Similarity=0.949 Sum_probs=255.3
Q ss_pred CCceEEEecCCcccCCCccccccCccccccccccHHhHHhCCCCCCCC-CCCCcccccccCCCCCCCCCccCCCCCcccc
Q psy4171 1 MSSSIEKKLTLSLPSSRRIIEKNGGKTPLTYHQFQSIVAKMDSPSPAE-APVTPLLVRQATTPLRDDHDEKYGVPTLEEL 79 (309)
Q Consensus 1 ~~~~~~~~~~~~L~~p~~i~~~~~g~~p~~fs~F~~~~~~~~~p~~p~-~~~~~~~~~~~~~~~~~~~~~~~~iP~l~~l 79 (309)
.||.++++++++|++|++|.+++++++|.|||+|++.+++...++.|. +.+ ..++... .. .......+|+++++
T Consensus 131 ~gI~~~~~~~~~L~~p~~v~~~~~~~~y~vftpf~k~~~~~~~~~~p~~~~p--~~~~~~~-~~--~~~~~~~~p~l~~l 205 (537)
T 3fy4_A 131 TGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQSFLKVAGEPSCAKSELVMSY--SSLPPIG-DI--GNLGISEVPSLEEL 205 (537)
T ss_dssp TTCEEECCCCSSSSCHHHHHHHTSSSCCSSHHHHHHHHCCCTTTTCCCCCCC--SCCCCCC-CC--CSSCCCCCCCTTTT
T ss_pred cCCeEEEecCCEEEchhhcccCCCCCCCCccCHHHHHHHhhcCCcCCCCCcc--ccCCCcc-cc--cccccccCCcHHhc
Confidence 489999999999999999987777789999999999998764322221 111 1122110 00 00122467888888
Q ss_pred CCCcCCC-CCCCCCccHHHHHHHHHHHHhhCccccccCCCCCCCCC-CCCCCCCCchhhccCcCcHHHHHHHHHHHHHhh
Q psy4171 80 GFDIEGL-LPPTWKGGETEAMRRLERHLERKAWVASFGRPKMTPQS-LLASQTGLSPFLRFGCLSTRLFYHDLNKLYKRI 157 (309)
Q Consensus 80 g~~~~~~-~~~~~~gGe~~A~~~L~~fl~~~~~l~~Y~~~r~~~~~-~~~~tS~LSpyL~~G~iS~r~v~~~~~~~~~~~ 157 (309)
|+..... ....|+|||++|+++|++|+.++.++.+|++.||.|+. ..++||+|||||++||||||+|++++.+.....
T Consensus 206 ~~~~~~~~~~~~~~~Ge~~A~~~L~~Fl~~~~~l~~Y~~~rd~p~~~~~~~tS~LSpyL~~G~lS~r~v~~~~~~~~~~~ 285 (537)
T 3fy4_A 206 GYKDDEQADWTPFRGGESEALKRLTKSISDKAWVANFEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQNIYKDV 285 (537)
T ss_dssp TCCGGGSSCCCSCCCSHHHHHHHHHHHTCCHHHHHTCCGGGCCTTCCSSCSSCCCHHHHHTTSSCHHHHHHHHHHHHHTT
T ss_pred CCCcccccccCCCCccHHHHHHHHHHHHhCchHHhhhcccccCccccCCCCCccCCHHHhCCCcCHHHHHHHHHHHHhhc
Confidence 8754321 22359999999999999999763237999999999863 247999999999999999999999998866432
Q ss_pred c-cCCCchhHHHHHHHHHHHHHHHHhCCcccccCCCCcCCCCCCCCchHHHHHHhcCCCCcHHHHHHHHHHHHhcccchH
Q psy4171 158 K-KAPPPLSLHGQLLWREFFYCAATRNPNFDRMLGNPICVQIPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHL 236 (309)
Q Consensus 158 ~-~~~~~~~~~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~w~~~~~~~~~w~~G~TG~p~vDA~mrqL~~tG~mhnr 236 (309)
. ..+++++|++||+|||||+++++++|++...++++.+.+++|+.|++.|++|++|+|||||||||||||++|||||||
T Consensus 286 ~~~~~~~~~f~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~w~~~~~~~~aW~~G~TG~P~vDA~MrqL~~tG~mHnr 365 (537)
T 3fy4_A 286 KKHTSPPVSLLGQLLWREFFYTTAFGTPNFDKMKGNRICKQIPWNEDHAMLAAWRDGKTGYPWIDAIMVQLLKWGWMHHL 365 (537)
T ss_dssp SCCCCTTTSHHHHHHHHHHHHHHHHTCTTTTSSTTCTTSCCCCCBCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHH
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHCcchhcccCChhhhcCCchhhhHHHHHHHcCCCCCHHHHHHHHHHHHhCcccHH
Confidence 2 246678999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCchHHHHHHHHhccccccCCcccchhhhcccCCCCccccccChhhhhhhcCCCCCCC
Q psy4171 237 ARHAVACFLTRGDLWVSWEEGMKIFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVKFGRKADPNGDFI 309 (309)
Q Consensus 237 ~R~~vasfl~~~~l~idW~~g~~~f~~~liD~d~a~n~g~wqw~a~~~~~~~~~r~~np~~q~~~~Dp~g~yi 309 (309)
+||||||||||++|+||||.|++||+++|||||+++|+|||||+||++.+..|||||||++|++||||+|+||
T Consensus 366 ~Rm~vAsfl~k~~L~idWr~G~~~F~~~liD~D~a~n~g~Wqw~ag~g~d~~~fRifNP~~Q~~kfDp~G~yI 438 (537)
T 3fy4_A 366 ARHCVACFLTRGDLFIHWEQGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQFNRIYSPISFGKKYDPDGKYI 438 (537)
T ss_dssp HHHHHHHHHTTTTTCBCHHHHHHHHHHHCTTCCHHHHHHHHHHHTTSSSCCCTTCCCCTTTTGGGTCTTCHHH
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHccccccccChHhhhhhcccCCCcccccccCHHHHHHHhCCCchHH
Confidence 9999999999559999999999999999999999999999999998776555999999999999999999997
No 3
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=100.00 E-value=1.8e-82 Score=631.76 Aligned_cols=305 Identities=51% Similarity=1.000 Sum_probs=256.2
Q ss_pred CceEEEecCCcccCCCccccccCccccccccccHHhHHhCCCCCCCCCCCCcccccccCCCCCCCCC----ccCCCCCcc
Q psy4171 2 SSSIEKKLTLSLPSSRRIIEKNGGKTPLTYHQFQSIVAKMDSPSPAEAPVTPLLVRQATTPLRDDHD----EKYGVPTLE 77 (309)
Q Consensus 2 ~~~~~~~~~~~L~~p~~i~~~~~g~~p~~fs~F~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~----~~~~iP~l~ 77 (309)
||.++++++++|++|++|.....|++|.||++|++.++++..+. |.+.+ ..++....|...... ....+|+++
T Consensus 153 gi~~~~~~~~~l~~p~~v~~~~~g~~~~vft~F~~~~~~~~~~~-p~~~p--~~~~~~~~p~~~~~~~~~~~~~~~p~l~ 229 (543)
T 2wq7_A 153 GVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPK-VLGVP--EKLKNMPTPPKDEVEQKDSAAYDCPTMK 229 (543)
T ss_dssp TCEEEEECCSSSSCHHHHHHHTTTSCCCSHHHHHHHHTTSCCCC-CCCCC--CCCSSCCCCCCCHHHHHCTTTTSCCCHH
T ss_pred CCEEEEecCCEEECccccccccCCCCCccHHHHHHHHHHccCCC-CCCcc--hhccccccccccccccccccccCCCCHH
Confidence 89999999999999999766666899999999999987753332 33222 122211111111000 003577888
Q ss_pred ccCCCcCCCCCCCCCccHHHHHHHHHHHHhhCccccccCCCCCCCCCCCCCCCCCchhhccCcCcHHHHHHHHHHHHHhh
Q psy4171 78 ELGFDIEGLLPPTWKGGETEAMRRLERHLERKAWVASFGRPKMTPQSLLASQTGLSPFLRFGCLSTRLFYHDLNKLYKRI 157 (309)
Q Consensus 78 ~lg~~~~~~~~~~~~gGe~~A~~~L~~fl~~~~~l~~Y~~~r~~~~~~~~~tS~LSpyL~~G~iS~r~v~~~~~~~~~~~ 157 (309)
+++++........|+|||++|+++|++||+++.++.+|++.||.|....++||+|||||++||||||+|++++.+.....
T Consensus 230 ~l~~~~~~~~~~~~~~Ge~~A~~~L~~Fl~~~~~l~~Y~~~Rd~p~~~~~~tS~LSPyL~~G~LSpR~v~~~~~~~~~~~ 309 (543)
T 2wq7_A 230 QLVKRPEELGPNKFPGGETEALRRMEESLKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKLKEIIKRQ 309 (543)
T ss_dssp HHCSCGGGCCCCCSCCSHHHHHHHHHHHHTCHHHHHHCCGGGSCSSCSSCSSCCCHHHHHHTSSCHHHHHHHHHHHHHHC
T ss_pred HcCCCccccccCCCCCCHHHHHHHHHHHHhCChhhhhhcccccCccccccCCCCcCHhHhCCCCCHHHHHHHHHHHHhcc
Confidence 88776443333569999999999999999875336899999999974358999999999999999999999998765432
Q ss_pred c-cCCCchhHHHHHHHHHHHHHHHHhCCcccccCCCCcCCCCCCCCchHHHHHHhcCCCCcHHHHHHHHHHHHhcccchH
Q psy4171 158 K-KAPPPLSLHGQLLWREFFYCAATRNPNFDRMLGNPICVQIPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHL 236 (309)
Q Consensus 158 ~-~~~~~~~~~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~w~~~~~~~~~w~~G~TG~p~vDA~mrqL~~tG~mhnr 236 (309)
. ..++.++|++||+|||||+++++++|++...++++.+.+++|+.+++.|++|++|+|||||||||||||++|||||||
T Consensus 310 ~~~~~~~~~f~~eL~WREf~~~~~~~~P~~~~~~~~~~~~~~~w~~~~~~~~aW~~G~TG~P~VDAaMrqL~~tG~mHnr 389 (543)
T 2wq7_A 310 PKHSQPPVSLIGQLMWREFYYTVAAAEPNFDRMLGNVYCMQIPWQEHPDHLEAWTHGRTGYPFIDAIMRQLRQEGWIHHL 389 (543)
T ss_dssp SSCCCTTTSHHHHHHHHHHHHHHHHTCTTTTSSTTCTTCCCCCCCCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHH
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhCCccccccCChHhhcCCCccCHHHHHHHHcCCCCCHHHHHHHHHHHHhCCccHH
Confidence 1 246778999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCchHHHHHHHHhccccccCCcccchhhhcccCCCCccccccChhhhhhhcCCCCCCC
Q psy4171 237 ARHAVACFLTRGDLWVSWEEGMKIFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVKFGRKADPNGDFI 309 (309)
Q Consensus 237 ~R~~vasfl~~~~l~idW~~g~~~f~~~liD~d~a~n~g~wqw~a~~~~~~~~~r~~np~~q~~~~Dp~g~yi 309 (309)
+|||||||||||+|+||||+|++||+++|||||+++|+|||||+||++.+..|||||||++|++||||+|+||
T Consensus 390 ~Rm~vASFL~kg~L~idWr~G~~~F~~~LiD~D~a~n~g~Wqw~aG~g~D~~~~RifNP~~q~~kfDp~g~yI 462 (543)
T 2wq7_A 390 ARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFHQYFRVYSPVAFGKKTDPQGHYI 462 (543)
T ss_dssp HHHHHHHHHTTTTTCCCHHHHHHHHHHHCTTCCHHHHHHHHHHHTTSSSCCCTTCCCCTTTGGGGTCTTCHHH
T ss_pred HHHHHHHHHHHHhhCCCCchHHHHHHHHhccCCcccCHHHHHHHhcCCCcCccccccCHHHHhhhcCCCchhH
Confidence 9999999999999999999999999999999999999999999998776555999999999999999999997
No 4
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=100.00 E-value=2.1e-80 Score=610.68 Aligned_cols=296 Identities=22% Similarity=0.335 Sum_probs=245.7
Q ss_pred CceEEEecCCcccCCCccccccCccccccccccHHhHH-hCCCCCCCCCCCCcccccccCCCCCCCCCccCCCCCccccC
Q psy4171 2 SSSIEKKLTLSLPSSRRIIEKNGGKTPLTYHQFQSIVA-KMDSPSPAEAPVTPLLVRQATTPLRDDHDEKYGVPTLEELG 80 (309)
Q Consensus 2 ~~~~~~~~~~~L~~p~~i~~~~~g~~p~~fs~F~~~~~-~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~iP~l~~lg 80 (309)
||.++++++++|++|++|.+ ..|++|.+|++|++.++ +...+..|.+.+ ..++..+... ....+|++++++
T Consensus 129 gi~~~~~~~~~l~~~~~~~~-~~g~~~~vft~F~~~~~~~~~~~~~p~~~p--~~~~~~~~~~-----~~~~~~~~~~l~ 200 (489)
T 1np7_A 129 GIEAKGYWGSTLCHPEDLPF-SIQDLPDLFTKFRKDIEKKKISIRPCFFAP--SQLLPSPNIK-----LELTAPPPEFFP 200 (489)
T ss_dssp TCEEEEECCSSSSCGGGSSS-CGGGCCSSHHHHHHHHHTTTCCCCCCCCCC--SCCCCCCCCC-----CCCCCCCGGGSC
T ss_pred CCeEEEecCCeeeCcccccc-CCCCCCchHHHHHHHHHHhccCCCCCCCCc--ccccCccccc-----cccCCCCHhhcC
Confidence 89999999999999999977 45899999999999987 532222233222 1121110000 012467777777
Q ss_pred CCcCC-CCCCCCCccHHHHHHHHHHHHh--hCccccccCCCCCCCCCCCCCCCCCchhhccCcCcHHHHHHHHHHHHHhh
Q psy4171 81 FDIEG-LLPPTWKGGETEAMRRLERHLE--RKAWVASFGRPKMTPQSLLASQTGLSPFLRFGCLSTRLFYHDLNKLYKRI 157 (309)
Q Consensus 81 ~~~~~-~~~~~~~gGe~~A~~~L~~fl~--~~~~l~~Y~~~r~~~~~~~~~tS~LSpyL~~G~iS~r~v~~~~~~~~~~~ 157 (309)
+.... .....|+|||++|+++|++|+. ++ +.+|++.||.|.. .++||+|||||++||||||+|++++.+.....
T Consensus 201 ~~~~~~~~~~~~~~Ge~~A~~~L~~Fl~~~~~--l~~Y~~~Rd~~~~-~~~tS~LSpyL~~G~lSpr~v~~~~~~~~~~~ 277 (489)
T 1np7_A 201 QINFDHRSVLAFQGGETAGLARLQDYFWHGDR--LKDYKETRNGMVG-ADYSSKFSPWLALGCLSPRFIYQEVKRYEQER 277 (489)
T ss_dssp CCCCCTTSSCCCCCSHHHHHHHHHHHHTTSCC--GGGHHHHTTCCSS-STTSCCCHHHHHTTSSCHHHHHHHHHHHHHHT
T ss_pred CCCcCccccCCCCCcHHHHHHHHHHHHhcchh--HhhhhhcccCCcc-ccCCcCcChhhcCCCCCHHHHHHHHHHHhhcc
Confidence 64322 2234599999999999999994 44 8999999997753 58899999999999999999999998743222
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHhCCcccccCCCCcCCCCCCCCchHHHHHHhcCCCCcHHHHHHHHHHHHhcccchHH
Q psy4171 158 KKAPPPLSLHGQLLWREFFYCAATRNPNFDRMLGNPICVQIPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLA 237 (309)
Q Consensus 158 ~~~~~~~~~~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~w~~~~~~~~~w~~G~TG~p~vDA~mrqL~~tG~mhnr~ 237 (309)
...+++++|++||+|||||+++++++|++...+.++.++.++|+.|++.|++|++|+|||||||||||||++|||||||+
T Consensus 278 ~~~~~~~~f~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~W~~d~~~~~aW~~G~TG~P~vDAaMrqL~~tG~mHnr~ 357 (489)
T 1np7_A 278 VSNDSTHWLIFELLWRDFFRFVAQKYGNKLFNRGGLLNKNFPWQEDQVRFELWRSGQTGYPLVDANMRELNLTGFMSNRG 357 (489)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHGGGGGSTTTTTTCCCCCBCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHCcchhhhhcCcccccCCCccCHHHHHHHHcCCCCChhHHHHHHHHHHhCCCcHHH
Confidence 12345677999999999999999999998776777778889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCchHHHHHHHHhccccccCCcccchhhhcccCCCCccccccChhhhhhhcCCCCCCC
Q psy4171 238 RHAVACFLTRGDLWVSWEEGMKIFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVKFGRKADPNGDFI 309 (309)
Q Consensus 238 R~~vasfl~~~~l~idW~~g~~~f~~~liD~d~a~n~g~wqw~a~~~~~~~~~r~~np~~q~~~~Dp~g~yi 309 (309)
|||||||||| +|+||||.|++||+++|||||+++|+|||||+||++++..|||||||++|++||||+|+||
T Consensus 358 Rm~vAsfL~k-~L~idWr~G~~~F~~~LiD~D~a~N~g~wqw~ag~g~d~~~~RifNp~~q~~kfDp~g~yI 428 (489)
T 1np7_A 358 RQNVASFLCK-NLGIDWRWGAEWFESCLIDYDVCSNWGNWNYTAGIGNDARDFRYFNIPKQSQQYDPQGTYL 428 (489)
T ss_dssp HHHHHHHHHH-TTCBCHHHHHHHHHHHCTTCCHHHHHHHHHHHHTSSCCTTSCCCCCHHHHHHHHSTTSHHH
T ss_pred HHHHHHHHHH-hcCCCChhHHHHHHHHhcccChhcChHhhhhhhccCCCcccccccCHHHHhhhcCCCCccH
Confidence 9999999999 9999999999999999999999999999999998876555899999999999999999997
No 5
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=100.00 E-value=1.1e-80 Score=615.37 Aligned_cols=291 Identities=22% Similarity=0.321 Sum_probs=242.9
Q ss_pred CCceEEEecCCcccCCCccccccCccccccccccHHhHHhCC-CCCCCCCCCCcccccccCCCCCCCCCccCCCCCcccc
Q psy4171 1 MSSSIEKKLTLSLPSSRRIIEKNGGKTPLTYHQFQSIVAKMD-SPSPAEAPVTPLLVRQATTPLRDDHDEKYGVPTLEEL 79 (309)
Q Consensus 1 ~~~~~~~~~~~~L~~p~~i~~~~~g~~p~~fs~F~~~~~~~~-~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~iP~l~~l 79 (309)
.||.++++++++|++|++|.+.+ |++|.||++|++.+.+.. .|+.|.+.+ ..++.. . ...++++++
T Consensus 129 ~gi~~~~~~~~~l~~p~~v~~~~-g~~~~vftpf~r~~~~~~~~~~~~~~~p--~~~~~~-----~-----~~~~~~~~l 195 (509)
T 1u3d_A 129 QGIAVRSFNADLLYEPWEVTDEL-GRPFSMFAAFWERCLSMPYDPESPLLPP--KKIISG-----D-----VSKCVADPL 195 (509)
T ss_dssp TTCEEEEECCSCSSCGGGCCCSS-SCCCSSHHHHHHHHHTCSSCCCCCCCCC--SCCCBT-----T-----GGGSSCCCC
T ss_pred cCcEEEEECCCEEEcCCcccCCC-CCCchhHHHHHHHHHhccCCCCCCCCCc--cccCcc-----c-----cCCCChhHh
Confidence 48999999999999999998874 799999999999887653 222222211 111100 0 112234455
Q ss_pred CCCcCC----CCC--CCCCccHHHHHHHHHHHHhhCccccccCCCCCCCCCCCCCCCCCchhhccCcCcHHHHHHHHHHH
Q psy4171 80 GFDIEG----LLP--PTWKGGETEAMRRLERHLERKAWVASFGRPKMTPQSLLASQTGLSPFLRFGCLSTRLFYHDLNKL 153 (309)
Q Consensus 80 g~~~~~----~~~--~~~~gGe~~A~~~L~~fl~~~~~l~~Y~~~r~~~~~~~~~tS~LSpyL~~G~iS~r~v~~~~~~~ 153 (309)
++.... ... ..|+|||++|+++|++|++++ +.+|++.||.|. .++||+|||||++||||||+|++++.+.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~Ge~~A~~~L~~Fl~~~--l~~Y~~~Rd~p~--~~~tS~LSPyL~~G~LSpR~v~~~~~~~ 271 (509)
T 1u3d_A 196 VFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGP--LLEYSKNRRKAD--SATTSFLSPHLHFGEVSVRKVFHLVRIK 271 (509)
T ss_dssp CCCCHHHHHHHTTHHHHCCCSHHHHHHHHHHHHTTG--GGGTTTTTTCSS--STTSCCCHHHHHTTSSCHHHHHHHHHHH
T ss_pred CCCcccccchhhhccccCCCcHHHHHHHHHHHHHHH--HHhhhhccCCCC--CCCCCCCChhhccCCCCHHHHHHHHHHH
Confidence 543210 001 248999999999999999887 799999999997 5789999999999999999999999864
Q ss_pred HH----hh-c-cCCCchhHHHHHHHHHHHHHHHHhCCcccccCCCCcCCCCCCCCchHHHHHHhcCCCCcHHHHHHHHHH
Q psy4171 154 YK----RI-K-KAPPPLSLHGQLLWREFFYCAATRNPNFDRMLGNPICVQIPWDVNMEALAKWANAQTGFPWIDAIMTQL 227 (309)
Q Consensus 154 ~~----~~-~-~~~~~~~~~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~w~~~~~~~~~w~~G~TG~p~vDA~mrqL 227 (309)
.. .. . ..++.++|++||+||||++++++++|++...+..+.++.++|+.|++.|++|++|+|||||||||||||
T Consensus 272 ~~~~~~~~~~~~~~s~~~fl~eL~WREf~~~~~~~~p~~~~~~~~~~~~~lpW~~d~~~~~aW~~G~TG~P~VDAaMrqL 351 (509)
T 1u3d_A 272 QVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMREL 351 (509)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSSTTTTTSCSCCTTTTCCCCCCHHHHHHHHHTCSSCHHHHHHHHHH
T ss_pred hhhhcccccccccchHHHHHHHHHHHHHHHHHHHhCccccccchhhhhccCCCcCChHHHHHHHcCCCCCHhHHHHHHHH
Confidence 31 11 1 123567899999999999999999999877777788899999999999999999999999999999999
Q ss_pred HHhcccchHHHHHHHHHHhhccCCCCchHHHHHHHHhccccccCCcccchhhhcccC-CCCccccccChhhhhhhcCCCC
Q psy4171 228 REEGWIHHLARHAVACFLTRGDLWVSWEEGMKIFDELLLDADWSVNAGMWMWLSCSS-FFQQFFHCYCPVKFGRKADPNG 306 (309)
Q Consensus 228 ~~tG~mhnr~R~~vasfl~~~~l~idW~~g~~~f~~~liD~d~a~n~g~wqw~a~~~-~~~~~~r~~np~~q~~~~Dp~g 306 (309)
++|||||||+|||||||||| +|+||||.|++||+++|||||+++|+|||||+||++ +.+||||||||++|++||||+|
T Consensus 352 ~~tG~mHnr~Rm~vasfl~k-~L~idWr~G~~~F~~~liD~D~a~n~g~wqw~ag~g~d~~py~RifNP~~Q~~kfDp~G 430 (509)
T 1u3d_A 352 WATGWLHDRIRVVVSSFFVK-VLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNG 430 (509)
T ss_dssp HHHSCCCHHHHHHHHHHHHH-TSCCCHHHHHHHHHHHCTTCCHHHHHHHHHHHHTCSTTCCCSSCCCCHHHHHHHHCTTS
T ss_pred HHhCCccHHHHHHHHHHHHH-ccCCCchHHHHHHHHHhccCCcccchHHHHHHhcCCCCCCccccccCHHHHHHhcCCCc
Confidence 99999999999999999999 999999999999999999999999999999999875 6799999999999999999999
Q ss_pred CCC
Q psy4171 307 DFI 309 (309)
Q Consensus 307 ~yi 309 (309)
+||
T Consensus 431 ~yI 433 (509)
T 1u3d_A 431 EYV 433 (509)
T ss_dssp HHH
T ss_pred hhH
Confidence 997
No 6
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=100.00 E-value=1.5e-80 Score=610.71 Aligned_cols=297 Identities=27% Similarity=0.440 Sum_probs=248.0
Q ss_pred CCceEEEecCCcccCCCccccccCccccccccccHHhHHhCCCCCCCCCCCCcccccccCCCC-C-CCCCccCCCCCccc
Q psy4171 1 MSSSIEKKLTLSLPSSRRIIEKNGGKTPLTYHQFQSIVAKMDSPSPAEAPVTPLLVRQATTPL-R-DDHDEKYGVPTLEE 78 (309)
Q Consensus 1 ~~~~~~~~~~~~L~~p~~i~~~~~g~~p~~fs~F~~~~~~~~~p~~p~~~~~~~~~~~~~~~~-~-~~~~~~~~iP~l~~ 78 (309)
.||.++++++++|++|++|.+++ |++|.+||+|++++++... +.|.+.+ ..++....+. . ........+|+++.
T Consensus 120 ~gi~~~~~~~~~l~~~~~~~~~~-g~~~~vft~f~~~~~~~~~-~~p~~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (484)
T 1owl_A 120 AGIRAVQLWDQLLHSPDQILSGS-GNPYSVYGPFWKNWQAQPK-PTPVATP--TELVDLSPEQLTAIAPLLLSELPTLKQ 195 (484)
T ss_dssp TTCEEEEECCSSSSCTTTCCCTT-SCCCSSHHHHHHHHHHSCC-CCCCCCC--CSCCCCCHHHHHHHGGGCCSSCCCTGG
T ss_pred cCcEEEEecCCEEEchhhhcccC-CCCchhhHHHHHHHHHhcC-CCCCCCc--cccccccccccccccccccCCCCCHHH
Confidence 48999999999999999998754 7999999999999876522 2222222 1111100000 0 00000124677777
Q ss_pred cCCCcCCCCCCCCCccHHHHHHHHHHHHhhCccccccCCCCCCCCCCCCCCCCCchhhccCcCcHHHHHHHHHHHHHhh-
Q psy4171 79 LGFDIEGLLPPTWKGGETEAMRRLERHLERKAWVASFGRPKMTPQSLLASQTGLSPFLRFGCLSTRLFYHDLNKLYKRI- 157 (309)
Q Consensus 79 lg~~~~~~~~~~~~gGe~~A~~~L~~fl~~~~~l~~Y~~~r~~~~~~~~~tS~LSpyL~~G~iS~r~v~~~~~~~~~~~- 157 (309)
++++.... . .|+|||++|+++|++|++++ +.+|++.||.|. .++||+|||||++||||||+|++++.+.....
T Consensus 196 l~~~~~~~-~-~~~~Ge~~A~~~L~~Fl~~~--l~~Y~~~rd~p~--~~~tS~LSpyL~~G~lSpr~v~~~~~~~~~~~~ 269 (484)
T 1owl_A 196 LGFDWDGG-F-PVEPGETAAIARLQEFCDRA--IADYDPQRNFPA--EAGTSGLSPALKFGAIGIRQAWQAASAAHALSR 269 (484)
T ss_dssp GTCCCCSC-C-SSCSSHHHHHHHHHHHHHTG--GGGHHHHTTCTT--SCCSCCCHHHHHTTSSCHHHHHHHHHHHHHHCC
T ss_pred cCCCcccc-C-cCCCCHHHHHHHHHHHHHHH--HHHhccccCCCC--ccCCcCccHhHcCCCcCHHHHHHHHHHHhcccc
Confidence 66654332 3 69999999999999999887 899999999987 68999999999999999999999998765411
Q ss_pred -c-cCCCchhHHHHHHHHHHHHHHHHhCCcccccCCCCcCCCCCCCCchHHHHHHhcCCCCcHHHHHHHHHHHHhcccch
Q psy4171 158 -K-KAPPPLSLHGQLLWREFFYCAATRNPNFDRMLGNPICVQIPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHH 235 (309)
Q Consensus 158 -~-~~~~~~~~~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~w~~~~~~~~~w~~G~TG~p~vDA~mrqL~~tG~mhn 235 (309)
. ..++.+.|++||+|||||+++++++|++...+.++.++.++|+.|++.|++|++|+|||||||||||||++||||||
T Consensus 270 ~~~~~~~~~~fl~eL~WREf~~~~~~~~P~~~~~~~~~~~~~l~w~~d~~~~~aW~~G~TG~P~vDAaMrqL~~tG~mHn 349 (484)
T 1owl_A 270 SDEARNSIRVWQQELAWREFYQHALYHFPSLADGPYRSLWQQFPWENREALFTAWTQAQTGYPIVDAAMRQLTETGWMHN 349 (484)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSCCSTGGGGCCCCCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCH
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHhCCccccccCChhhhcCCCcCCHHHHHHHHcCCCCChhHHHHHHHHHHhCCccH
Confidence 0 02356789999999999999999999998888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCchHHHHHHHHhccccccCCcccchhhhccc-CCCCccccccChhhhhhhcCCCCCCC
Q psy4171 236 LARHAVACFLTRGDLWVSWEEGMKIFDELLLDADWSVNAGMWMWLSCS-SFFQQFFHCYCPVKFGRKADPNGDFI 309 (309)
Q Consensus 236 r~R~~vasfl~~~~l~idW~~g~~~f~~~liD~d~a~n~g~wqw~a~~-~~~~~~~r~~np~~q~~~~Dp~g~yi 309 (309)
|+|||||||||| +|+||||.|++||+++|||||+++|+|||||++|+ .+++| ||||||++|++||||+|+||
T Consensus 350 r~Rm~vAsfL~k-~L~idWr~g~~~F~~~llD~d~a~n~g~wqw~ag~G~d~~p-fRifNp~~q~~kfDp~g~yI 422 (484)
T 1owl_A 350 RCRMIVASFLTK-DLIIDWRRGEQFFMQHLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQAKKFDATATYI 422 (484)
T ss_dssp HHHHHHHHHHHH-TSCCCTHHHHHHHHTTCTTCCHHHHHHHHHHTTTCSSSCCC-CCCCCHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHHH-hcCCCCcHHHHHHHHhcccCCcccCHHHHHHhhCcCCCCCc-cceeCHHHHhhhcCCCchhH
Confidence 999999999999 99999999999999999999999999999999985 57788 99999999999999999997
No 7
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=100.00 E-value=5.2e-80 Score=604.64 Aligned_cols=288 Identities=23% Similarity=0.389 Sum_probs=241.5
Q ss_pred ceEEEecCCcccCCCccccccCccccccccccHHhHHhC-CC-CCCCCCCCCcccccccCCCCCCCCCccCCCCCccccC
Q psy4171 3 SSIEKKLTLSLPSSRRIIEKNGGKTPLTYHQFQSIVAKM-DS-PSPAEAPVTPLLVRQATTPLRDDHDEKYGVPTLEELG 80 (309)
Q Consensus 3 ~~~~~~~~~~L~~p~~i~~~~~g~~p~~fs~F~~~~~~~-~~-p~~p~~~~~~~~~~~~~~~~~~~~~~~~~iP~l~~lg 80 (309)
|.++++++++|++|++|.+.+ |++|.+||+|++++++. .. ++.|.+.| ..++.. ... ...+|+ ++
T Consensus 123 i~~~~~~~~~l~~~~~~~~~~-g~~~~vft~f~~~~~~~l~~~~p~~~~~p--~~~~~~--~~~-----~~~~~~---l~ 189 (471)
T 1dnp_A 123 VVCEGFDDSVILPPGAVMTGN-HEMYKVFTPFKNAWLKRLREGMPECVAAP--KVRSSG--SIE-----PSPSIT---LN 189 (471)
T ss_dssp SEEEEECCSSSSCTTSSCCTT-SCCCSSHHHHHHHHHHHHHTCCCCCCCCC--CCCTTC--CCC-----CCCCCC---CC
T ss_pred cEEEEecCCEEEchhhcccCC-CCCCcchHHHHHHHHHhccccCCCCCCCc--cccCcc--ccc-----CCCCcc---cC
Confidence 789999999999999998765 79999999999988653 21 12222222 111100 000 112332 33
Q ss_pred CCcCCCCCCCCCccHHHHHHHHHHHHhhCccccccCCCCCCCCCCCCCCCCCchhhccCcCcHHHHHHHHHHHHHhhccC
Q psy4171 81 FDIEGLLPPTWKGGETEAMRRLERHLERKAWVASFGRPKMTPQSLLASQTGLSPFLRFGCLSTRLFYHDLNKLYKRIKKA 160 (309)
Q Consensus 81 ~~~~~~~~~~~~gGe~~A~~~L~~fl~~~~~l~~Y~~~r~~~~~~~~~tS~LSpyL~~G~iS~r~v~~~~~~~~~~~~~~ 160 (309)
++........|+|||++|+++|++|++++ +.+|++.||.|. .++||+|||||++||||||+|++++.+..... ..
T Consensus 190 ~~~~~~~~~~~~~Ge~~A~~~L~~Fl~~~--l~~Y~~~rd~p~--~~~tS~LSpyL~~G~lSpr~v~~~~~~~~~~~-~~ 264 (471)
T 1dnp_A 190 YPRQSFDTAHFPVEEKAAIAQLRQFCQNG--AGEYEQQRDFPA--VEGTSRLSASLATGGLSPRQCLHRLLAEQPQA-LD 264 (471)
T ss_dssp SCCCCCCTTTSCCSHHHHHHHHHHHHHTH--HHHHHHHTTCTT--SCCSCCCHHHHHHTSSCHHHHHHHHHHHCGGG-GG
T ss_pred CCccccccccCCCCHHHHHHHHHHHHHHH--HHHhhhccCCcC--ccCCCCCCHhHcCCCcCHHHHHHHHHHHhccc-cc
Confidence 33222112459999999999999999887 899999999987 68899999999999999999999998754321 13
Q ss_pred CC-chhHHHHHHHHHHHHHHHHhCCccccc-CCCCcCCCCCCCCchHHHHHHhcCCCCcHHHHHHHHHHHHhcccchHHH
Q psy4171 161 PP-PLSLHGQLLWREFFYCAATRNPNFDRM-LGNPICVQIPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLAR 238 (309)
Q Consensus 161 ~~-~~~~~~eL~WRef~~~~~~~~p~~~~~-~~~~~~~~~~w~~~~~~~~~w~~G~TG~p~vDA~mrqL~~tG~mhnr~R 238 (309)
++ .++|++||+|||||+++++++|++... +.++.++.++|+.|++.|++|++|+|||||||||||||++|||||||+|
T Consensus 265 ~~~~~~fl~eL~WREf~~~~~~~~P~~~~~~~~~~~~~~l~w~~d~~~~~aW~~G~TG~P~vDAaMrqL~~tG~mHnr~R 344 (471)
T 1dnp_A 265 GGAGSVWLNELIWREFYRHLITYHPSLCKHRPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLR 344 (471)
T ss_dssp TSTTHHHHHHHHHHHHHHHHHHHCGGGGGTCCSSGGGGGSCCCCCHHHHHHHHHTCSSCHHHHHHHHHHHHHSCCCHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHhCCchhccCCcchhhhcCCCcCCHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcCHHHH
Confidence 46 788999999999999999999999877 7888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCchHHHHHHHHhccccccCCcccchhhhccc-CCCCccccccChhhhhhhcCCCCCCC
Q psy4171 239 HAVACFLTRGDLWVSWEEGMKIFDELLLDADWSVNAGMWMWLSCS-SFFQQFFHCYCPVKFGRKADPNGDFI 309 (309)
Q Consensus 239 ~~vasfl~~~~l~idW~~g~~~f~~~liD~d~a~n~g~wqw~a~~-~~~~~~~r~~np~~q~~~~Dp~g~yi 309 (309)
|+||||||| +|+||||.|++||+++|||||+++|+|||||+||+ .+++||||||||++|++||||+|+||
T Consensus 345 MivAsFL~k-~L~idWr~g~~~F~~~llD~d~a~n~g~wqw~ag~G~d~~py~RifNp~~q~~kfDp~G~YI 415 (471)
T 1dnp_A 345 MITASFLVK-DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFI 415 (471)
T ss_dssp HHHHHHHHH-TSCCCHHHHHHHHHTTCTTCCHHHHHHHHHHHTTCSTTCCCTTCCCCHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHH-hcCCCchHHHHHHHHhccCCCcccCHHHHHhhcCCCCCCCCcceecCHHHHHHhcCCCchhH
Confidence 999999999 99999999999999999999999999999999975 57899999999999999999999997
No 8
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=100.00 E-value=1.3e-78 Score=587.09 Aligned_cols=271 Identities=24% Similarity=0.409 Sum_probs=233.4
Q ss_pred CceEEEecCCcccCCCccccccCccccccccccHHhHHhCCCCCCCCCCCCcccccccCCCCCCCCCccCCCCCccccCC
Q psy4171 2 SSSIEKKLTLSLPSSRRIIEKNGGKTPLTYHQFQSIVAKMDSPSPAEAPVTPLLVRQATTPLRDDHDEKYGVPTLEELGF 81 (309)
Q Consensus 2 ~~~~~~~~~~~L~~p~~i~~~~~g~~p~~fs~F~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~iP~l~~lg~ 81 (309)
||.++++++++|++|++ |++|.+||+|++.++.+. .|.+.|. .++ .|.. ...+|.
T Consensus 113 ~i~~~~~~~~~l~~~~~------~~~~~~~t~f~k~~~~~~---~p~~~p~--~~~---~p~~-----~~~l~~------ 167 (420)
T 2j07_A 113 PVPLHLLPAPHLLPPDL------PRAYRVYTPFSRLYRGAA---PPLPPPE--ALP---KGPE-----EGEIPR------ 167 (420)
T ss_dssp SSCEEEECCCCSSCTTC------SSCCSSHHHHHTTCCCCC---CCCCCCS--SCC---CCCC-----CCCCCC------
T ss_pred CCeEEEeCCCEEEccCC------CCccccccHHHHHHhhcc---CCCCCcc--ccC---CCCc-----cccCCC------
Confidence 89999999999999998 689999999999876221 2222211 110 1111 011222
Q ss_pred CcCCCCCCCCCccHHHHHHHHHHHHhhCccccccCCCCCCCCCCCCCCCCCchhhccCcCcHHHHHHHHHHHHHhhccCC
Q psy4171 82 DIEGLLPPTWKGGETEAMRRLERHLERKAWVASFGRPKMTPQSLLASQTGLSPFLRFGCLSTRLFYHDLNKLYKRIKKAP 161 (309)
Q Consensus 82 ~~~~~~~~~~~gGe~~A~~~L~~fl~~~~~l~~Y~~~r~~~~~~~~~tS~LSpyL~~G~iS~r~v~~~~~~~~~~~~~~~ 161 (309)
.......|+|||++|+++|++|++++ +.+|++.||.|. .++||+|||||++||||||+|++++.+.. .+
T Consensus 168 --~~~~~~~~~~Ge~~A~~~L~~Fl~~~--l~~Y~~~rd~p~--~~~tS~LSpyL~~G~lSpr~v~~~~~~~~-----~~ 236 (420)
T 2j07_A 168 --EDPGLPLPEPGEEAALAGLRAFLEAK--LPRYAEERDRLD--GEGGSRLSPYFALGVLSPRLAAWEAERRG-----GE 236 (420)
T ss_dssp --CCCSSCCCCCSHHHHHHHHHHHHHHT--GGGHHHHTTCTT--CTTSCCCHHHHHTTSSCHHHHHHHHHHHC-----SH
T ss_pred --cccccccCCCcHHHHHHHHHHHHHHH--HhhhhhccCCCC--ccCCCCcchhhcCCccCHHHHHHHHHHHh-----cc
Confidence 11122468999999999999999987 899999999997 58999999999999999999999997643 23
Q ss_pred CchhHHHHHHHHHHHHHHHHhCCcccccCCCCcCCCCCCCCchHHHHHHhcCCCCcHHHHHHHHHHHHhcccchHHHHHH
Q psy4171 162 PPLSLHGQLLWREFFYCAATRNPNFDRMLGNPICVQIPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHAV 241 (309)
Q Consensus 162 ~~~~~~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~w~~~~~~~~~w~~G~TG~p~vDA~mrqL~~tG~mhnr~R~~v 241 (309)
+.++|++||+|||||+++++++|++...+.++.++.++|+.|++.|++|++|+||+||||||||||++|||||||+||||
T Consensus 237 ~~~~f~~eL~WREf~~~~~~~~p~~~~~~~~~~~~~l~w~~d~~~~~~w~~G~TG~P~vDAaMrqL~~tG~mHnr~Rm~v 316 (420)
T 2j07_A 237 GARKWVAELLWRDFSYHLLYHFPWMAERPLDPRFQAFPWQEDEALFQAWYEGKTGVPLVDAAMRELHATGFLSNRARMNA 316 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCGGGGTSCSSGGGTTCCCCCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCcccccccchhhhcCCcccCHHHHHHHHcCCCCcHhHHHHHHHHHHhCCCChHHHHHH
Confidence 56789999999999999999999998888888889999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCCchHHHHHHHHhccccccCCcccchhhhcccC-CCCccccccChhhhhhhcCCCCCCC
Q psy4171 242 ACFLTRGDLWVSWEEGMKIFDELLLDADWSVNAGMWMWLSCSS-FFQQFFHCYCPVKFGRKADPNGDFI 309 (309)
Q Consensus 242 asfl~~~~l~idW~~g~~~f~~~liD~d~a~n~g~wqw~a~~~-~~~~~~r~~np~~q~~~~Dp~g~yi 309 (309)
|||||| +|+||||.|++||+++|||||+++|+|||||+||++ +++||||||||++|++||||+|+||
T Consensus 317 asfl~k-~L~idWr~g~~~F~~~llD~d~a~n~g~wqw~aG~g~d~~pyfR~fNp~~q~~kfDp~g~yi 384 (420)
T 2j07_A 317 AQFAVK-HLLLPWKRCEEAFRHLLLDGDRAVNLQGWQWAGGLGVDAAPYFRVFNPVLQGERHDPEGRWL 384 (420)
T ss_dssp HHHHHH-TSCCCHHHHHHHHHHHCTTCCHHHHHHHHHHHTTSSGGGCCTTCCCCHHHHHHHHSTTSHHH
T ss_pred HHHHHH-hcCCCChHHHHHHHHHhhcCCccccHHHHHHHHccCCCCCCCceeeCHHHHHHHhCCCchhH
Confidence 999999 999999999999999999999999999999999764 6799999999999999999999997
No 9
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=100.00 E-value=3.2e-78 Score=599.09 Aligned_cols=294 Identities=24% Similarity=0.394 Sum_probs=238.7
Q ss_pred ceEEEecCCcccCCCccccccCccccccccccHHhHHhCCCCCCCCCCCCcccccccCCCCCCCCCccCCCCCccccCCC
Q psy4171 3 SSIEKKLTLSLPSSRRIIEKNGGKTPLTYHQFQSIVAKMDSPSPAEAPVTPLLVRQATTPLRDDHDEKYGVPTLEELGFD 82 (309)
Q Consensus 3 ~~~~~~~~~~L~~p~~i~~~~~g~~p~~fs~F~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~iP~l~~lg~~ 82 (309)
|.++++++++|++|++|++.. |++|.+|++|++++++...+..|.+.+ ..++.. + . ......+|+++++|+.
T Consensus 167 i~~~~~~~~~L~~p~~v~~~~-g~~~~vft~F~r~~~~~~~~~~p~~~p--~~~~~~--~--~-~~~~~~~~~l~~l~~~ 238 (525)
T 2j4d_A 167 TKLELIWGSTMYHKDDLPFDV-FDLPDVYTQFRKSVEAKCSIRSSTRIP--LSLGPT--P--S-VDDWGDVPTLEKLGVE 238 (525)
T ss_dssp CEEEEECCSCSSCGGGSSSCG-GGCCSSHHHHHHHHHHHCCCCCCCCBC--SCCCCC--C--C-CSCCCCCCCTTTTTCC
T ss_pred eEEEEecCCEEEccccccccC-CCCcccHHHHHHHHHHhcCCCCCCCCc--cccCCc--c--c-cccccCCCCHHHcCCC
Confidence 899999999999999998754 799999999999988732222233222 112211 0 0 0012346777777765
Q ss_pred cC-CCCCCCCCccHHHHHHHHHHHH-h-hCccccccCCCCCCCCCCCCCCCCCchhhccCcCcHHHHHHHHHHHHHhhcc
Q psy4171 83 IE-GLLPPTWKGGETEAMRRLERHL-E-RKAWVASFGRPKMTPQSLLASQTGLSPFLRFGCLSTRLFYHDLNKLYKRIKK 159 (309)
Q Consensus 83 ~~-~~~~~~~~gGe~~A~~~L~~fl-~-~~~~l~~Y~~~r~~~~~~~~~tS~LSpyL~~G~iS~r~v~~~~~~~~~~~~~ 159 (309)
.. ......|+|||++|+++|++|+ + ++ +.+|++.||.+.+ .++||+|||||++||||||+|++++.++......
T Consensus 239 ~~~~~~~~~~~~Ge~~A~~~L~~Fl~~~~~--l~~Y~~~Rd~~~~-~~~tS~LSPyL~~G~LSpR~v~~~~~~~~~~~~~ 315 (525)
T 2j4d_A 239 PQEVTRGMRFVGGESAGVGRVFEYFWKKDL--LKVYKETRNGMLG-PDYSTKFSPWLAFGCISPRFIYEEVQRYEKERVA 315 (525)
T ss_dssp CCCCCSEEEECCSHHHHHHHHHHHHTTSCC--GGGHHHHTTCCSS-STTSCCCHHHHHTTSSCHHHHHHHHHHHHHHTCC
T ss_pred cccccccCCCCCcHHHHHHHHHHHHhhCch--HhhhcccCCCccc-cccCCCcChhhcCCcCCHHHHHHHHHHHhhcccc
Confidence 42 1112348999999999999999 5 34 7999999997632 6899999999999999999999999875432222
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhC-CcccccCCCCcCCCCCCCCchHHHHHHhcCCCCcHHHHHHHHHHHHhcccchHHH
Q psy4171 160 APPPLSLHGQLLWREFFYCAATRN-PNFDRMLGNPICVQIPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLAR 238 (309)
Q Consensus 160 ~~~~~~~~~eL~WRef~~~~~~~~-p~~~~~~~~~~~~~~~w~~~~~~~~~w~~G~TG~p~vDA~mrqL~~tG~mhnr~R 238 (309)
.+++++|++||+|||||++++.++ |.+...++.+ +..++|+.+.+.|++|++|+|||||||||||||++|||||||+|
T Consensus 316 ~~~~~~f~~EL~WREf~~~~~~~~~~~~~~~~~~~-~~~~~w~~~~~~~~aW~~G~TG~P~VDAaMrqL~~tG~mHnr~R 394 (525)
T 2j4d_A 316 NNSTYWVLFELIWRDYFRFLSIKCGNSLFHLGGPR-NVQGKWSQDQKLFESWRDAKTGYPLIDANMKELSTTGFMSNRGR 394 (525)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHGGGGTSTTTTT-TCCCCCBCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHcCchhhhccCch-hhcCCCCCCHHHHHHHHcCCCCChHHHHHHHHHHHHCCcCHHHH
Confidence 345678999999999999998765 5565554444 46789999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCchHHHHHHHHhccccccCCcccchhhhcccCCCCccccccChhhhhhhcCCCCCCC
Q psy4171 239 HAVACFLTRGDLWVSWEEGMKIFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVKFGRKADPNGDFI 309 (309)
Q Consensus 239 ~~vasfl~~~~l~idW~~g~~~f~~~liD~d~a~n~g~wqw~a~~~~~~~~~r~~np~~q~~~~Dp~g~yi 309 (309)
||||||||| +|+||||+|++||+++|||||+++|+|||||+||++.+..+||||||++|++||||+|+||
T Consensus 395 m~vAsfL~k-~L~idWr~G~~~F~~~LiD~D~a~n~g~WQw~aG~g~D~~~~RifNP~~q~kk~Dp~G~YI 464 (525)
T 2j4d_A 395 QIVCSFLVR-DMGLDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDPEGEYV 464 (525)
T ss_dssp HHHHHHHHH-TSCBCHHHHHHHHHHHCTTCCHHHHHHHHHHHHTCSSCGGGCCCCCHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHH-hcCCCcHHHHHHHHHhccccchhcChHHHHhhcCCCCCccccccCCHHHHhhhcCCCchhH
Confidence 999999999 9999999999999999999999999999999998875544589999999999999999997
No 10
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.6e-77 Score=580.32 Aligned_cols=263 Identities=26% Similarity=0.381 Sum_probs=227.4
Q ss_pred CCceEEEecCCcccCCCccccccCccccccccccHHhHHhC--CCCCCCCCCCCcccccccCCCCCCCCCccCCCCCccc
Q psy4171 1 MSSSIEKKLTLSLPSSRRIIEKNGGKTPLTYHQFQSIVAKM--DSPSPAEAPVTPLLVRQATTPLRDDHDEKYGVPTLEE 78 (309)
Q Consensus 1 ~~~~~~~~~~~~L~~p~~i~~~~~g~~p~~fs~F~~~~~~~--~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~iP~l~~ 78 (309)
.||.++++++++|++|++| +|++||+|++.+.+. ..|+.+.+.+ ..++ .+. .+ .+
T Consensus 117 ~gi~~~~~~~~~l~~~~~~-------~y~vftpf~~~~~~~~~~~p~~~~~~~--~~~~-----~p~------~~---~~ 173 (440)
T 2e0i_A 117 NGIEFKAYEDYLLTPKSLF-------HHRNFTSFYNEVSKVKVREPETMEGSF--DVTD-----SSM------NV---DF 173 (440)
T ss_dssp TTCEEEEECCSCSSCGGGC-------CCSSHHHHHHHHTTSCCCCCCCCCCCB--CCCS-----SSB------CG---GG
T ss_pred cCceEEEecCCEEEccccc-------CcccCcHHHHHHHHhcccccccCCCCc--ccCC-----Ccc------hh---hh
Confidence 3899999999999999998 688999999988764 2212111111 1111 010 01 01
Q ss_pred cCCCcCCCCCCCCCccHHHHHHHHHHHHhhCccccccCCCCCCCCCCCCCCCCCchhhccCcCcHHHHHHHHHHHHHhhc
Q psy4171 79 LGFDIEGLLPPTWKGGETEAMRRLERHLERKAWVASFGRPKMTPQSLLASQTGLSPFLRFGCLSTRLFYHDLNKLYKRIK 158 (309)
Q Consensus 79 lg~~~~~~~~~~~~gGe~~A~~~L~~fl~~~~~l~~Y~~~r~~~~~~~~~tS~LSpyL~~G~iS~r~v~~~~~~~~~~~~ 158 (309)
+ +. ....++|||++|+++|+ |++++ +.+| +.||.|+ .++||+|||||++||||||+|++++
T Consensus 174 l--p~---~~~~~~~Ge~~A~~~L~-Fl~~~--l~~Y-~~rd~p~--~~~tS~LSPyL~~G~lSpr~v~~~~-------- 234 (440)
T 2e0i_A 174 L--LT---FKKIESPLFRGGRREGL-YLLHR--NVDF-RRRDYPA--ENNNYRLSPHLKFGTISMREAYYTQ-------- 234 (440)
T ss_dssp G--GG---TCCCCCTTCCCSHHHHH-HHHTC--CCCG-GGTTCTT--TTCCCCCHHHHHTTSSCHHHHHHHS--------
T ss_pred C--Cc---cccCCCCCHHHHHHHHH-HHHhh--hhcC-CcCCCcc--ccCCCCccHhHhCCCCCHHHHHHHh--------
Confidence 1 11 12357999999999999 99887 8999 9999986 6899999999999999999999987
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHhCCcccccCCCCcCCCCCCCCchHHHHHHhcCCCCcHHHHHHHHHHHHhcccchHHH
Q psy4171 159 KAPPPLSLHGQLLWREFFYCAATRNPNFDRMLGNPICVQIPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLAR 238 (309)
Q Consensus 159 ~~~~~~~~~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~w~~~~~~~~~w~~G~TG~p~vDA~mrqL~~tG~mhnr~R 238 (309)
++.+.|++||+|||||+++++++|++...+.++.++.++|+.|++.|++|++|+|||||||||||||++|||||||+|
T Consensus 235 --~~~~~fl~eL~WREf~~~~~~~~P~~~~~~~~~~~~~l~W~~d~~~~~aW~~G~TG~P~vDAaMrqL~~tG~mHnr~R 312 (440)
T 2e0i_A 235 --KGKEEFVRELYWRDFFTLLAYYNPHVFGHCYRREYDNISWENNESYFEAWKEGRTGYPIIDAGMRMLNSTGYINGRVR 312 (440)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHCGGGTTSCSSGGGGGCCCCCCHHHHHHHHHTCSSCHHHHHHHHHHHHHSCCCHHHH
T ss_pred --cCHHHHHHHHHHHHHHHHHHHhCCCccccccchhhhcCCcccchHHHHHHHhCCCCCHHHHHHHHHHHHHcchhHHHH
Confidence 256789999999999999999999999888889899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCchHHHHHHHHhccccccCCcccchhhhcccCCCCccccccChhhhhhhcCCCCCCC
Q psy4171 239 HAVACFLTRGDLWVSWEEGMKIFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVKFGRKADPNGDFI 309 (309)
Q Consensus 239 ~~vasfl~~~~l~idW~~g~~~f~~~liD~d~a~n~g~wqw~a~~~~~~~~~r~~np~~q~~~~Dp~g~yi 309 (309)
||||||||| +|+||||.|++||+++|||||+++|+|||||+||++++. |||||||++|++||||+|+||
T Consensus 313 m~vAsfL~k-~L~idWr~g~~~F~~~llD~d~a~n~g~wqw~aG~g~d~-~~RifNp~~q~~kfDp~g~yI 381 (440)
T 2e0i_A 313 MLVAFFLVK-VLFVDWRWGERYFATKLVDYDPAINNGNWQWIASTGVDY-MFRVFNPWKQQEKFDPEAKFI 381 (440)
T ss_dssp HHHHHHHHH-TSCCCHHHHHHHHHHHCTTCCHHHHHHHHHHHTTSSSCC-SCCCCCHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHH-HhCCCccHHHHHHHHHcccCCccccHHHHHHHhCcCCCC-CCCccCHHHHHHHhCCCcHhH
Confidence 999999999 999999999999999999999999999999999887666 999999999999999999997
No 11
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=100.00 E-value=4.2e-68 Score=522.32 Aligned_cols=291 Identities=17% Similarity=0.196 Sum_probs=212.3
Q ss_pred CCceEEEecCCcccCCCccccccCccccccccccHHhHHhC----CCCCCCCCCCCcccccccCCCCCCCCCcc---CCC
Q psy4171 1 MSSSIEKKLTLSLPSSRRIIEKNGGKTPLTYHQFQSIVAKM----DSPSPAEAPVTPLLVRQATTPLRDDHDEK---YGV 73 (309)
Q Consensus 1 ~~~~~~~~~~~~L~~p~~i~~~~~g~~p~~fs~F~~~~~~~----~~p~~p~~~~~~~~~~~~~~~~~~~~~~~---~~i 73 (309)
+||.++++.+++|++|+++.+++ .|.+|+.|++..+.+ ...+.+.+.+.+..++... ..+...... ..+
T Consensus 152 lgi~~~~~~~~~l~~~~~~~~~~---~~~v~tf~~~~~~~~~~~~~~~p~~~p~~~~~~lp~~~-~~~~~~~~l~~~~~~ 227 (482)
T 2xry_A 152 ISIPFFEVDAHNVVPCWEASQKH---EYAAHTFRPKLYALLPEFLEEFPELEPNSVTPELSAGA-GMVETLSDVLETGVK 227 (482)
T ss_dssp CCSCEEEECCSSSSCHHHHCSSC---CSSHHHHHHHHHHHHHHHCCCCCCCCCCSSCCC----------CHHHHHHHHHH
T ss_pred cCCEEEEEeCCEEccccccccCC---CCceecchHHHHHHHHhhccccCCCCCCCCccccCCcc-chhhhhhhhcccCCC
Confidence 38999999999999999996543 388898555422221 2111001111001111000 000000000 001
Q ss_pred CCcc--ccCCCcCCCC-CCCCCccHHHHHHHHHHHHhhCccccccCCCCCCCCCCCCCCCCCchhhccCcCcHHHHHHHH
Q psy4171 74 PTLE--ELGFDIEGLL-PPTWKGGETEAMRRLERHLERKAWVASFGRPKMTPQSLLASQTGLSPFLRFGCLSTRLFYHDL 150 (309)
Q Consensus 74 P~l~--~lg~~~~~~~-~~~~~gGe~~A~~~L~~fl~~~~~l~~Y~~~r~~~~~~~~~tS~LSpyL~~G~iS~r~v~~~~ 150 (309)
|.+. ++|.+..... ...|+|||++|+++|++|++++ +.+|++.||.|. .++||+|||||++||||||+|++++
T Consensus 228 ~~~~~~~~g~~~~~~~~~~~~~~Ge~~A~~~L~~Fl~~~--l~~Y~~~Rd~p~--~~~tS~LSPyL~~G~LSpR~v~~~~ 303 (482)
T 2xry_A 228 ALLPERALLKNKDPLFEPWHFEPGEKAAKKVMESFIADR--LDSYGALRNDPT--KNMLSNLSPYLHFGQISSQRVVLEV 303 (482)
T ss_dssp HHGGGCCBCTTSCBCCCTTSCCCSHHHHHHHHHHHHHHT--HHHHHHHTTCTT--SCCSCCCHHHHHTTSSCHHHHHHHH
T ss_pred CCcchhhhccccccccccCCCCCcHHHHHHHHHHHHHHH--HhhhccccCCCC--ccCCCCcCHHHhCCccCHHHHHHHH
Confidence 1111 2332211110 1158999999999999999987 899999999997 5899999999999999999999998
Q ss_pred HHHHHhhccCCCchhHHHHHH-HHHHHHHHHHhCCcccccCCCCcCCCCC---CCCch-H---HHHHHhcCCCCcHHHHH
Q psy4171 151 NKLYKRIKKAPPPLSLHGQLL-WREFFYCAATRNPNFDRMLGNPICVQIP---WDVNM-E---ALAKWANAQTGFPWIDA 222 (309)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~eL~-WRef~~~~~~~~p~~~~~~~~~~~~~~~---w~~~~-~---~~~~w~~G~TG~p~vDA 222 (309)
.+... ..++.++|++||+ ||||++++++++|++...++.+.|.+.+ |+.|+ + .+++|++|+||||||||
T Consensus 304 ~~~~~---~~~~~e~fl~ELi~WREf~~~~~~~~P~~~~~~~~~~w~~~~~~~~~~d~~~~~~~~~aw~~G~TG~P~VDA 380 (482)
T 2xry_A 304 EKAES---NPGSKKAFLDEILIWKEISDNFCYYNPGYDGFESFPSWAKESLNAHRNDVRSHIYTLEEFEAGKTHDPLWNA 380 (482)
T ss_dssp HHCCC---CTTHHHHHHHHHTHHHHHHHHHHHHCTTTTSGGGSCHHHHHHHHHTTTSCCSCCCCHHHHHTTCSSCHHHHH
T ss_pred HHhhc---ccccHHHHHHHHHHHHHHHHHHHHhCCcccccccchHHHhhhhhhcccCchhhhHHHHHHHhCCcCCHHHHH
Confidence 76321 1356789999997 9999999999999998766554332211 22332 2 69999999999999999
Q ss_pred HHHHHHHhcccchHHHHHHHHHHhhccCCCCc-hHHHHHHHHh-------ccccccCCcccchhhhcccCCC-----Ccc
Q psy4171 223 IMTQLREEGWIHHLARHAVACFLTRGDLWVSW-EEGMKIFDEL-------LLDADWSVNAGMWMWLSCSSFF-----QQF 289 (309)
Q Consensus 223 ~mrqL~~tG~mhnr~R~~vasfl~~~~l~idW-~~g~~~f~~~-------liD~d~a~n~g~wqw~a~~~~~-----~~~ 289 (309)
|||||++|||||||+||+|| | +| ||| +.|++||+++ |||||+|+|+|||||++||+++ +||
T Consensus 381 aMrqL~~tG~mHnr~RM~va----k-~L-idW~~~ge~~f~~~l~Lnd~y~iD~d~ann~ggwqw~agG~~~~~~~~~p~ 454 (482)
T 2xry_A 381 SQMELLSTGKMHGYTRMYWA----K-KI-LEWSESPEKALEIAICLNDRYELDGRDPNGYAGIAWSIGGVHDRAWGEREV 454 (482)
T ss_dssp HHHHHHHHSCCCHHHHHHHH----H-HH-HHTSSSHHHHHHHHHHHHHHHCTTCSSHHHHHHHHHHHHCTTSCCCCCBTT
T ss_pred HHHHHHHhCccccHHHHHHH----c-cc-CCCCchHHHHHHHHHHhcCceeccCCCccchhHhhhhhcCCCCCCcccccc
Confidence 99999999999999999996 6 66 999 8999999999 4999999999999999987665 478
Q ss_pred c---cccChhhhhhhcCCCCCCC
Q psy4171 290 F---HCYCPVKFGRKADPNGDFI 309 (309)
Q Consensus 290 ~---r~~np~~q~~~~Dp~g~yi 309 (309)
| |||||++|++||||+| ||
T Consensus 455 fg~~R~fnp~~q~~kfD~~~-yi 476 (482)
T 2xry_A 455 TGKIRYMSYEGCKRKFDVKL-YI 476 (482)
T ss_dssp TBTSCCCCHHHHHHHSCHHH-HH
T ss_pred cccceeechhHhhhhcCHHH-HH
Confidence 8 9999999999999998 87
No 12
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=100.00 E-value=1.8e-65 Score=504.25 Aligned_cols=281 Identities=17% Similarity=0.205 Sum_probs=208.9
Q ss_pred CCceEEEecCCcccCCCccccccCccccccccccHHhHHhCC---CCCCCCCCCCcccccccCCCCCCCCCccCCCCCcc
Q psy4171 1 MSSSIEKKLTLSLPSSRRIIEKNGGKTPLTYHQFQSIVAKMD---SPSPAEAPVTPLLVRQATTPLRDDHDEKYGVPTLE 77 (309)
Q Consensus 1 ~~~~~~~~~~~~L~~p~~i~~~~~g~~p~~fs~F~~~~~~~~---~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~iP~l~ 77 (309)
.||.++++++|+|++|++|.+++ ++.+|+.+.++.+.+. .+.++.+++. ..+ ...+. ...++.+.
T Consensus 159 ~gi~~~~~~~~~l~~p~~v~~~~---~~~~~t~~~~~~~~~~~~~~~~p~~~~~~--~~~---~~~~~----~~~~~~l~ 226 (506)
T 3umv_A 159 PGVAVHQVDAHNVVPVWTASAKM---EYSAKTFRGKVSKVMDEYLVEFPELPAVV--PWD---REQPE----GVDWDALI 226 (506)
T ss_dssp TTSEEEEECCSCSSCHHHHCSSC---CSSHHHHHHHHHTTHHHHSCCCCCCCCCC--CCC---SCCCC----CCCHHHHH
T ss_pred CCeEEEEeCCcEEECcccccCCC---CCCccCHHHHHHHhccccccCCCCCCCcc--ccc---ccccc----ccChhhhh
Confidence 38999999999999999996643 3445554434332221 1111111100 000 00000 01112221
Q ss_pred c-c-CCCcCCCCCCCCCccHHHHHHHH----HHHHhhCccccccCCCCCCCCCCCCCCCCCchhhccCcCcHHHHHHHHH
Q psy4171 78 E-L-GFDIEGLLPPTWKGGETEAMRRL----ERHLERKAWVASFGRPKMTPQSLLASQTGLSPFLRFGCLSTRLFYHDLN 151 (309)
Q Consensus 78 ~-l-g~~~~~~~~~~~~gGe~~A~~~L----~~fl~~~~~l~~Y~~~r~~~~~~~~~tS~LSpyL~~G~iS~r~v~~~~~ 151 (309)
+ + ++.........|+|||++|+++| ++|++++ +.+|++.||.|+. .++||+|||||+|||||||+|++++.
T Consensus 227 ~~~~~~~~~~~~~~~~~~Ge~~A~~~L~~~~~~Fl~~~--l~~Y~~~Rd~p~~-~~~tS~LSPyL~~G~lS~r~v~~~~~ 303 (506)
T 3umv_A 227 ARVCSEAENVPEIDWCEPGEEAAIEALLGSKDGFLTKR--IKSYETDRNDPTK-PRALSGLSPYLHFGHISAQRCALEAK 303 (506)
T ss_dssp HHHHHTSCCCCCCCSSCCSHHHHHHHHHCTTTCHHHHT--GGGHHHHTTCTTC-GGGSCCCHHHHHHTSSCHHHHHHHHH
T ss_pred hhhccccccccccCCCCCCHHHHHHHHHhhHHHHHHhH--HhhhccccCCccc-cCCCccCCHHHhCCCcCHHHHHHHHH
Confidence 1 1 22211111224799999999999 9999887 8999999999973 37899999999999999999999998
Q ss_pred HHHHhhccCCCchhHHHHHHHH-HHHHHHHHhCCcccccCCCCcCCCCCCCC--------ch-H---HHHHHhcCCCCcH
Q psy4171 152 KLYKRIKKAPPPLSLHGQLLWR-EFFYCAATRNPNFDRMLGNPICVQIPWDV--------NM-E---ALAKWANAQTGFP 218 (309)
Q Consensus 152 ~~~~~~~~~~~~~~~~~eL~WR-ef~~~~~~~~p~~~~~~~~~~~~~~~w~~--------~~-~---~~~~w~~G~TG~p 218 (309)
+.... ..++.++|++||+|| |||+++++++|++..... .++|.. |. + .|++|++|+||||
T Consensus 304 ~~~~~--~~~~~~~f~~eL~WRREf~~~~~~~~p~~~~~~~-----~~~w~~~~l~~~~~d~~~~~~~~~~w~~G~TG~p 376 (506)
T 3umv_A 304 KCRHL--SPKSVDAFLEELVVRRELADNFCYYQPQYDSLSG-----AWEWARKTLMDHAADKREHIYTREQLENAKTHDP 376 (506)
T ss_dssp HHGGG--SHHHHHHHHHHHTHHHHHHHHHHHHCTTTTSGGG-----SCHHHHHHHHHTTTSCCSCCCCHHHHHTTCSSCH
T ss_pred HHHhh--ccccHHHHHHHHHHhHHHHHHHHHhCcchhhhhc-----cchhhhhhhhhhcccchhhhccHHHHHcCCCCCH
Confidence 75432 124568999999996 999999999999875533 345632 22 2 4999999999999
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHhhccCCCCchHHHH-------HHHHh-ccccccCCcccchhhhcccC-----C
Q psy4171 219 WIDAIMTQLREEGWIHHLARHAVACFLTRGDLWVSWEEGMK-------IFDEL-LLDADWSVNAGMWMWLSCSS-----F 285 (309)
Q Consensus 219 ~vDA~mrqL~~tG~mhnr~R~~vasfl~~~~l~idW~~g~~-------~f~~~-liD~d~a~n~g~wqw~a~~~-----~ 285 (309)
|||||||||++|||||||+||+|| | +| |||+.|++ ||+++ |||||+++|+|||||++||. +
T Consensus 377 ~vDA~mrqL~~tG~mHnr~Rm~~a----k-~l-l~W~~g~~~~~~~a~~f~~~~llD~d~~~n~~~wqw~a~G~~~~g~~ 450 (506)
T 3umv_A 377 LWNASQLEMVHHGKMHGFMRMYWA----K-KI-LEWTSGPEEALSTAIYLNDKYEIDGRDPSGYVGCMWSICGLHDQGWK 450 (506)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHH----H-HH-HHTSSSHHHHHHHHHHHHHHHCTTCSSHHHHHHHHHHHHCTTSCCCC
T ss_pred HHHHHHHHHHHhCchhHHHHHHHH----H-hh-ccCCCCHHHHHHHHHHHhhccCcccCccccccceeEEecCCCCCCCc
Confidence 999999999999999999999986 7 78 99999999 99996 99999999999999999632 4
Q ss_pred CCccc---cccChhhhhhhcCCCC--CCC
Q psy4171 286 FQQFF---HCYCPVKFGRKADPNG--DFI 309 (309)
Q Consensus 286 ~~~~~---r~~np~~q~~~~Dp~g--~yi 309 (309)
.+||| |+|||++|++||||+| +||
T Consensus 451 ~~p~fg~iR~~np~~q~~k~Dp~gyi~yi 479 (506)
T 3umv_A 451 ERPVFGKIRYMNYAGCKRKFDVDAYISYV 479 (506)
T ss_dssp CBTTTBTSCCCCHHHHHHHSCHHHHHHHH
T ss_pred cccccCcceeECHHHHHHHhCCCchHHHH
Confidence 57888 9999999999999999 876
No 13
>3zxs_A Cryptochrome B, rscryb; lyase, cryPro, lumazine, iron-sulfur-cluster; HET: FAD DLZ; 2.70A {Rhodobacter sphaeroides}
Probab=100.00 E-value=6.3e-59 Score=453.96 Aligned_cols=289 Identities=17% Similarity=0.156 Sum_probs=209.2
Q ss_pred CceEEEecCC-cccCCCcccc-ccCccccccccccHHhHHhC-----C--CCC-----------CCCCCCCcccccccCC
Q psy4171 2 SSSIEKKLTL-SLPSSRRIIE-KNGGKTPLTYHQFQSIVAKM-----D--SPS-----------PAEAPVTPLLVRQATT 61 (309)
Q Consensus 2 ~~~~~~~~~~-~L~~p~~i~~-~~~g~~p~~fs~F~~~~~~~-----~--~p~-----------~p~~~~~~~~~~~~~~ 61 (309)
||.++++.+. +|++|+++.+ ..++++|.++ +|++.+++. + .|. .|.|.. ..+|....
T Consensus 131 gi~v~~~~~~~fL~~~~e~~~~~~~~k~~~me-~FYR~~Rkr~~iLm~~~~P~GG~WnfD~~NRk~~p~~--~~~p~~~~ 207 (522)
T 3zxs_A 131 PLPVRFLPDDRFLCPADEFARWTEGRKQLRME-WFYREMRRRTGLLMEGDEPAGGKWNFDTENRKPAAPD--LLRPRPLR 207 (522)
T ss_dssp SSCEEEECCCCSSSCHHHHHHHHTTCSSCCHH-HHHHHHHHHHTTTEETTEEGGGSSCCGGGSCCCCCCC--TTCCCCCC
T ss_pred CCcEEEeCCCCcccCHHHHHHhhcCCCCeEee-HHHHHHHHHhCcCCCCCCCCCCccCccccccccCCCC--CCCCCCCC
Confidence 7999999985 8999999975 2457888886 888866532 1 111 011100 00110000
Q ss_pred CCCCCCCccCCCCCccccCCC-cCCCCCCCCCccHHHHHHHHHHHHhhCccccccCCCCCCCCC--CCCCCCCCchhhcc
Q psy4171 62 PLRDDHDEKYGVPTLEELGFD-IEGLLPPTWKGGETEAMRRLERHLERKAWVASFGRPKMTPQS--LLASQTGLSPFLRF 138 (309)
Q Consensus 62 ~~~~~~~~~~~iP~l~~lg~~-~~~~~~~~~~gGe~~A~~~L~~fl~~~~~l~~Y~~~r~~~~~--~~~~tS~LSpyL~~ 138 (309)
+.++... ...++.+++.... ........|++||++|+++|++|++++ +..|++.||.|.. ...+||+|||||++
T Consensus 208 ~~~d~~~-~~v~~~v~~~~~~~~G~~~~~~~~~ge~~A~~~L~~Fl~~r--l~~Y~~~rD~~~~~~~~~~tS~LSpyL~~ 284 (522)
T 3zxs_A 208 FEPDAEV-RAVLDLVEARFPRHFGRLRPFHWATDRAEALRALDHFIRES--LPRFGDEQDAMLADDPFLSHALLSSSMNL 284 (522)
T ss_dssp CCCCHHH-HHHHHHHHHHCTTSSSCCCSCCCCCSHHHHHHHHHHHHHHT--GGGTTTTTTCCBTTBSSTTCCCCHHHHHH
T ss_pred CCCchhH-HHHHHHHHHhccCCcCccccCCCCCCHHHHHHHHHHHHHhh--hhhhhhhccCcccCCCCCCcccccHHHhC
Confidence 0000000 0001111111001 111224579999999999999999988 7999999998863 12379999999999
Q ss_pred CcCcHHHHHHHHHHHHHhhcc-CCCchhHHHHHH-HHHHHHHHHHhC-CcccccCCCCcCCCCCCCCchHHHHHHhcCCC
Q psy4171 139 GCLSTRLFYHDLNKLYKRIKK-APPPLSLHGQLL-WREFFYCAATRN-PNFDRMLGNPICVQIPWDVNMEALAKWANAQT 215 (309)
Q Consensus 139 G~iS~r~v~~~~~~~~~~~~~-~~~~~~~~~eL~-WRef~~~~~~~~-p~~~~~~~~~~~~~~~w~~~~~~~~~w~~G~T 215 (309)
||||||+|++++.+....... ..+.++|++||+ |||||+++++++ |.+...+..+..+.+ .++|++|+|
T Consensus 285 G~LSpRev~~~~~~~~~~~~~~~~~~e~firellgWREF~~~l~~~~~P~~~~~n~~~~~~~l--------~~~~w~G~T 356 (522)
T 3zxs_A 285 GLLGPMEVCRRAETEWREGRAPLNAVEGFIRQILGWREYVRGIWTLSGPDYIRSNGLGHSAAL--------PPLYWGKPT 356 (522)
T ss_dssp TSSCHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHHHHHHGGGGGGCCTTCCCBCC--------CGGGGTCCC
T ss_pred CCcCHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHhCccccccccccccccc--------hHHHhcCCC
Confidence 999999999999876654221 235678999985 999999999874 888765554333333 345669999
Q ss_pred CcHHHHHHHHHHHHhcccchHHHHHHHHHHhhccCCCCchHHHHHHHHhcccc-c---cCCcccchhhhcccC-CCCcc-
Q psy4171 216 GFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWVSWEEGMKIFDELLLDA-D---WSVNAGMWMWLSCSS-FFQQF- 289 (309)
Q Consensus 216 G~p~vDA~mrqL~~tG~mhnr~R~~vasfl~~~~l~idW~~g~~~f~~~liD~-d---~a~n~g~wqw~a~~~-~~~~~- 289 (309)
|+||||||||||++|||||||+||||||||+| +|+||||.|++||+++|||+ | .++++|||||++||+ ..+||
T Consensus 357 G~P~VDA~MRqL~~TGwmHnr~RmmVasfl~k-~L~idWr~G~~wF~~~LiD~~~Wv~~~N~~Gm~q~a~Gg~~~~KPY~ 435 (522)
T 3zxs_A 357 RMACLSAAVAQTRDLAYAHHIQRLMVTGNFAL-LAGVDPAEVHEWYLSVYIDALEWVEAPNTIGMSQFADHGLLGSKPYV 435 (522)
T ss_dssp SCHHHHHHHHHHHHHSCCCHHHHHHTHHHHHH-HTTBCHHHHHHHHHHHCTTCCHHHHHHHHHTTTTCCSSSTTCSSCCC
T ss_pred CCHHHHHHHHHHHHHhchhHHHHHHHHHHHHH-HcCCChHHHHHHHHHHhcchhhhhhccccccchheecCCccCCCCCC
Confidence 99999999999999999999999999999999 99999999999999999998 5 467889999999876 45776
Q ss_pred -----ccccChhhhhhhcCCC
Q psy4171 290 -----FHCYCPVKFGRKADPN 305 (309)
Q Consensus 290 -----~r~~np~~q~~~~Dp~ 305 (309)
++.|+-...+..|||.
T Consensus 436 ~~~~yI~kms~yc~~c~y~~~ 456 (522)
T 3zxs_A 436 SSGAYIDRMSDYCRGCAYAVK 456 (522)
T ss_dssp CCHHHHHHHCSCGGGSSSBTT
T ss_pred CchHHHHHHhccccCCccCcc
Confidence 4666778888888875
No 14
>3lgb_A DNA primase large subunit; Fe-S cluster, DNA-binding, DNA-directed RNA POL iron, iron-sulfur, metal-binding, nucleotidyltransferase; HET: DNA MSE EPE; 1.54A {Saccharomyces cerevisiae}
Probab=45.63 E-value=44 Score=28.01 Aligned_cols=48 Identities=21% Similarity=0.340 Sum_probs=41.9
Q ss_pred cHHHHHHHHHHHHhcccchHHHHHHHHHHhhccCCCCchHHHHHHHHhcc
Q psy4171 217 FPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWVSWEEGMKIFDELLL 266 (309)
Q Consensus 217 ~p~vDA~mrqL~~tG~mhnr~R~~vasfl~~~~l~idW~~g~~~f~~~li 266 (309)
=||+-+.+..|++..-+.|..|+.++.||.. .+++=.+...+|...+.
T Consensus 19 PpCM~~l~~~Lr~~~hL~h~gR~ql~lFLkg--iGls~ee~l~f~r~~F~ 66 (194)
T 3lgb_A 19 PLCIKNLMEGLKKNHHLRYYGRQQLSLFLKG--IGLSADEALKFWSEAFT 66 (194)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH--TTCCHHHHHHHHHHHST
T ss_pred cHHHHHHHHHHHcCCCCCchhHHHHHHHHHh--CCCCHHHHHHHHHHHcc
Confidence 3788889999999999999999999999974 99999988888877553
No 15
>2drn_C 24-residues peptide from AN A-kinase anchoring protein; AKAP, PKA, signal transduction, 4-helix bundle, helix- loop-helix; NMR {Rattus norvegicus}
Probab=25.15 E-value=30 Score=18.93 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=13.1
Q ss_pred cHHHHHHHHHHHHhcc
Q psy4171 217 FPWIDAIMTQLREEGW 232 (309)
Q Consensus 217 ~p~vDA~mrqL~~tG~ 232 (309)
.-+|||.++|.+..|=
T Consensus 8 ~RIVdaVi~qvkasga 23 (26)
T 2drn_C 8 SRIVDAVIEQVKAAGA 23 (26)
T ss_dssp HHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHhccc
Confidence 4589999999988773
No 16
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=24.63 E-value=1.5e+02 Score=21.16 Aligned_cols=50 Identities=22% Similarity=0.321 Sum_probs=37.3
Q ss_pred CCcHHH-HHHHHHHHHhcccchHHHHHHHHHHhhccCCCCchHHHHHHHHhcccccc
Q psy4171 215 TGFPWI-DAIMTQLREEGWIHHLARHAVACFLTRGDLWVSWEEGMKIFDELLLDADW 270 (309)
Q Consensus 215 TG~p~v-DA~mrqL~~tG~mhnr~R~~vasfl~~~~l~idW~~g~~~f~~~liD~d~ 270 (309)
....++ +..++||..-||-..++|..+ ..+ .-+=....+|...+-.|-|-
T Consensus 15 ~~~~~~n~~~I~qL~~MGF~~~~a~~AL--~~~----n~n~e~A~ewL~~h~~D~D~ 65 (85)
T 2dkl_A 15 QDEAWIMSRLIKQLTDMGFPREPAEEAL--KSN----NMNLDQAMSALLEKKVDVDK 65 (85)
T ss_dssp CCHHHHHHHHHHHHHHHTCCHHHHHHHH--HHT----TSCHHHHHHHHHTTSCCSSC
T ss_pred CCccccCHHHHHHHHHcCCCHHHHHHHH--HHc----CCCHHHHHHHHHHCcCCccc
Confidence 344567 789999999999988888876 233 33456678888888888763
Done!