RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4171
(309 letters)
>d1np7a1 a.99.1.1 (A:205-483) Cryptochrome C-terminal domain
{Synechocystis sp., pcc 6803 [TaxId: 1143]}
Length = 279
Score = 119 bits (298), Expect = 2e-32
Identities = 57/219 (26%), Positives = 96/219 (43%), Gaps = 2/219 (0%)
Query: 91 WKGGETEAMRRLERHLERKAWVASFGRPKMTPQSLLASQTGLSPFLRFGCLSTRLFYHDL 150
++GGET + RL+ + + + + S + SP+L GCLS R Y ++
Sbjct: 8 FQGGETAGLARLQDYFWHGDRLKDYKETRNGMVGADYS-SKFSPWLALGCLSPRFIYQEV 66
Query: 151 NKLYKRIKKAPPPLSLHGQLLWREFFYCAATRNPNFDRMLGNPICVQIPWDVNMEALAKW 210
+ + L +LLWR+FF A + N G + PW + W
Sbjct: 67 KRYEQERVSNDSTHWLIFELLWRDFFRFVAQKYGNKLFNRGGLLNKNFPWQEDQVRFELW 126
Query: 211 ANAQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWVSWEEGMKIFDELLLDADW 270
+ QTG+P +DA M +L G++ + R VA FL + + W G + F+ L+D D
Sbjct: 127 RSGQTGYPLVDANMRELNLTGFMSNRGRQNVASFLCKNL-GIDWRWGAEWFESCLIDYDV 185
Query: 271 SVNAGMWMWLSCSSFFQQFFHCYCPVKFGRKADPNGDFI 309
N G W + + + F + K ++ DP G ++
Sbjct: 186 CSNWGNWNYTAGIGNDARDFRYFNIPKQSQQYDPQGTYL 224
>d1dnpa1 a.99.1.1 (A:201-469) C-terminal domain of DNA photolyase
{Escherichia coli [TaxId: 562]}
Length = 269
Score = 108 bits (269), Expect = 3e-28
Identities = 58/219 (26%), Positives = 89/219 (40%), Gaps = 7/219 (3%)
Query: 93 GGETEAMRRLERHLERKAWVASFGRPKMTPQSLLASQTGLSPFLRFGCLSTRLFYHDLNK 152
E A+ +L + + + + + P + + LS L G LS R H L
Sbjct: 2 VEEKAAIAQLRQFCQNG--AGEYEQQRDFP--AVEGTSRLSASLATGGLSPRQCLHRLLA 57
Query: 153 LYKRIKKAPPPLSLHGQLLWREFFYCA-ATRNPNFDRMLGNPICVQIPWDVNMEALAKWA 211
+ +L+WREF+ ++ W N L W
Sbjct: 58 EQPQALDGGAGSVWLNELIWREFYRHLITYHPSLCKHRPFIAWTDRVQWQSNPAHLQAWQ 117
Query: 212 NAQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWVSWEEGMKIFDELLLDADWS 271
+TG+P +DA M QL GW+H+ R A FL + DL + W EG + F L+D D +
Sbjct: 118 EGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK-DLLIDWREGERYFMSQLIDGDLA 176
Query: 272 VNAGMWMWLSCS-SFFQQFFHCYCPVKFGRKADPNGDFI 309
N G W W + + + +F + P G K D G+FI
Sbjct: 177 ANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFI 215
>d1owla1 a.99.1.1 (A:205-475) C-terminal domain of DNA photolyase
{Synechococcus elongatus [TaxId: 32046]}
Length = 271
Score = 98.9 bits (245), Expect = 6e-25
Identities = 67/221 (30%), Positives = 102/221 (46%), Gaps = 8/221 (3%)
Query: 92 KGGETEAMRRLERHLERKAWVASFGRPKMTPQSLLASQTGLSPFLRFGCLSTRLFYHDLN 151
+ GET A+ RL+ +R +A + + P A +GLSP L+FG + R + +
Sbjct: 3 EPGETAAIARLQEFCDRA--IADYDPQRNFP--AEAGTSGLSPALKFGAIGIRQAWQAAS 58
Query: 152 KLYKRIKKAPPPLSL---HGQLLWREFFYCAATRNPNFDRMLGNPICVQIPWDVNMEALA 208
+ + S+ +L WREF+ A P+ + Q PW+
Sbjct: 59 AAHALSRSDEARNSIRVWQQELAWREFYQHALYHFPSLADGPYRSLWQQFPWENREALFT 118
Query: 209 KWANAQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWVSWEEGMKIFDELLLDA 268
W AQTG+P +DA M QL E GW+H+ R VA FLT+ DL + W G + F + L+D
Sbjct: 119 AWTQAQTGYPIVDAAMRQLTETGWMHNRCRMIVASFLTK-DLIIDWRRGEQFFMQHLVDG 177
Query: 269 DWSVNAGMWMWLSCSSFFQQFFHCYCPVKFGRKADPNGDFI 309
D + N G W W + S + + P +K D +I
Sbjct: 178 DLAANNGGWQWSASSGMDPKPLRIFNPASQAKKFDATATYI 218
>d2j07a1 a.99.1.1 (A:172-405) C-terminal domain of DNA photolyase
{Thermus thermophilus [TaxId: 274]}
Length = 234
Score = 96.1 bits (238), Expect = 3e-24
Identities = 58/222 (26%), Positives = 89/222 (40%), Gaps = 11/222 (4%)
Query: 89 PTWKGGETEAMRRLERHLERKAWVASFGRPKMTPQSLLASQTGLSPFLRFGCLSTRLFYH 148
P + GE A+ L LE K + R ++ + + LSP+ G LS RL
Sbjct: 2 PLPEPGEEAALAGLRAFLEAKLPRYAEERDRLDGEG----GSRLSPYFALGVLSPRLAAW 57
Query: 149 DLNKLYKRIKKAPPPLSLHGQLLWREFFYCAATRNPNFDRMLGNPICVQIPWDVNMEALA 208
+ + + +LLWR+F Y P +P PW +
Sbjct: 58 EAERRGGEGARKW-----VAELLWRDFSYHLLYHFPWMAERPLDPRFQAFPWQEDEALFQ 112
Query: 209 KWANAQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWVSWEEGMKIFDELLLDA 268
W +TG P +DA M +L G++ + AR A F + + W+ + F LLLD
Sbjct: 113 AWYEGKTGVPLVDAAMRELHATGFLSNRARMNAAQFAVKHL-LLPWKRCEEAFRHLLLDG 171
Query: 269 DWSVNAGMWMWLSCSSFF-QQFFHCYCPVKFGRKADPNGDFI 309
D +VN W W +F + PV G + DP G ++
Sbjct: 172 DRAVNLQGWQWAGGLGVDAAPYFRVFNPVLQGERHDPEGRWL 213
>d1u3da1 a.99.1.1 (A:198-497) Cryptochrome C-terminal domain {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 300
Score = 97.3 bits (241), Expect = 4e-24
Identities = 56/231 (24%), Positives = 91/231 (39%), Gaps = 12/231 (5%)
Query: 86 LLPPTWKGGETEAMRRLERHLERKAWVASFGRPKMTPQSLLASQTGLSPFLRFGCLSTRL 145
LL W G + + L + + + + + A+ + LSP L FG +S R
Sbjct: 11 LLARAWSPGWSNGDKALTTFINGP--LLEYSKNRRKAD--SATTSFLSPHLHFGEVSVRK 66
Query: 146 FYHDLNKLYKRIKKAPPPLSLHG------QLLWREFFYCAATRNPNFDRMLGNPICVQIP 199
+H + + RE+ + +P P
Sbjct: 67 VFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFP 126
Query: 200 WDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWVSWEEGMK 259
W V+ W +TG+P +DA M +L GW+H R V+ F + L + W GMK
Sbjct: 127 WAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK-VLQLPWRWGMK 185
Query: 260 IFDELLLDADWSVNAGMWMWLSCSSFFQQ-FFHCYCPVKFGRKADPNGDFI 309
F + LLDAD +A W +++ + + F P G K DPNG+++
Sbjct: 186 YFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYV 236
>d1owla2 c.28.1.1 (A:3-204) DNA photolyase {Synechococcus elongatus
[TaxId: 32046]}
Length = 202
Score = 40.4 bits (93), Expect = 8e-05
Identities = 17/66 (25%), Positives = 23/66 (34%), Gaps = 1/66 (1%)
Query: 20 IEKNGGKTPLTYHQFQSIVAKMDSPSPAEAPVTPLLVRQATTPLRDDHDEKYGVPTLEEL 79
I G Y F P+P P T L+ +PTL++L
Sbjct: 136 ILSGSGNPYSVYGPFWKNWQAQPKPTPVATP-TELVDLSPEQLTAIAPLLLSELPTLKQL 194
Query: 80 GFDIEG 85
GFD +G
Sbjct: 195 GFDWDG 200
>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos
taurus) [TaxId: 9913]}
Length = 105
Score = 25.8 bits (57), Expect = 3.4
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 4/25 (16%)
Query: 58 QATTPLRDDHDEKYGVPTLEELGFD 82
Q P ++ G+ T EELG D
Sbjct: 83 QELRPTLNE----LGISTPEELGLD 103
>d1i58a_ d.122.1.3 (A:) Histidine kinase CheA {Thermotoga maritima
[TaxId: 2336]}
Length = 189
Score = 26.7 bits (57), Expect = 3.6
Identities = 11/110 (10%), Positives = 22/110 (20%), Gaps = 1/110 (0%)
Query: 192 NPICVQIPWDVNMEALAKWANAQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLW 251
+ V+ + + L + + I + D
Sbjct: 41 DRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDG 100
Query: 252 VS-WEEGMKIFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVKFGR 300
+E + D S A + + F F V
Sbjct: 101 RGIDKEKIIRKAIEKGLIDESKAATLSDQEILNFLFVPGFSTKEKVSEVS 150
>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA
methyltransferase Trm1 {Pyrococcus horikoshii [TaxId:
53953]}
Length = 375
Score = 25.7 bits (56), Expect = 8.8
Identities = 3/19 (15%), Positives = 10/19 (52%)
Query: 146 FYHDLNKLYKRIKKAPPPL 164
++D + + +R+K +
Sbjct: 318 LFYDTHAIGRRLKIETKKV 336
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.137 0.455
Gapped
Lambda K H
0.267 0.0433 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,311,016
Number of extensions: 64361
Number of successful extensions: 213
Number of sequences better than 10.0: 1
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 21
Length of query: 309
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 224
Effective length of database: 1,240,546
Effective search space: 277882304
Effective search space used: 277882304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.9 bits)