Query psy4173
Match_columns 61
No_of_seqs 109 out of 400
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 18:44:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4173.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4173hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2372|consensus 99.9 5.7E-27 1.2E-31 158.9 5.2 61 1-61 181-241 (241)
2 smart00584 TLDc domain in TBC 99.8 1.2E-20 2.6E-25 120.4 7.3 59 2-60 105-164 (165)
3 COG5142 OXR1 Oxidation resista 99.8 6.2E-21 1.3E-25 126.5 4.8 60 2-61 152-212 (212)
4 PF07534 TLD: TLD; InterPro: 99.6 1.7E-15 3.7E-20 91.7 5.9 59 2-60 78-138 (139)
5 KOG2801|consensus 99.5 9.6E-16 2.1E-20 109.9 -1.0 59 1-61 496-554 (559)
6 KOG2557|consensus 99.5 1.2E-14 2.7E-19 104.4 4.0 54 7-60 324-378 (427)
7 KOG4636|consensus 91.8 0.21 4.6E-06 37.1 3.3 42 7-60 386-427 (483)
8 PF10926 DUF2800: Protein of u 51.2 11 0.00024 27.4 1.8 37 5-46 115-151 (372)
9 PF11029 DAZAP2: DAZ associate 39.3 15 0.00032 23.5 0.8 17 7-23 121-137 (137)
10 PRK00536 speE spermidine synth 34.9 20 0.00044 24.7 1.0 11 8-18 74-84 (262)
11 PF07177 Neuralized: Neuralize 33.0 22 0.00048 19.7 0.8 22 36-57 31-52 (69)
12 KOG0042|consensus 31.7 43 0.00092 26.5 2.3 30 8-37 68-110 (680)
13 COG5405 HslV ATP-dependent pro 27.0 29 0.00063 23.2 0.7 22 6-28 119-140 (178)
14 TIGR03000 plancto_dom_1 Planct 24.0 88 0.0019 18.1 2.2 30 21-51 14-43 (75)
15 PF12248 Methyltransf_FA: Farn 23.1 1.7E+02 0.0036 17.0 4.2 43 10-56 18-60 (102)
No 1
>KOG2372|consensus
Probab=99.93 E-value=5.7e-27 Score=158.91 Aligned_cols=61 Identities=54% Similarity=1.154 Sum_probs=59.4
Q ss_pred CeeeeeCCCeEEEccCCCCceEEEeCccCCceeecCcCCCCCCCCCCCCeEEeEEEEEEEC
Q psy4173 1 MYFIKGNNESLSIGAGDGKFGLWLDGDLYQGRSEPCSTYGNEPLSPQQDFVVKTLECWAFI 61 (61)
Q Consensus 1 ~~f~~~~~~~l~iGgg~g~~~l~id~~l~~G~S~~c~TF~n~~Ls~~~~F~i~~lEvW~~~ 61 (61)
+||++|++++|+||||+|+||||||++|.+|.|+||+||+|.+|+++++|.|+.||||+|+
T Consensus 181 ~f~i~c~~dfLa~G~GgGRfgLwLD~dL~~G~S~~ceTFgN~~Ls~~qdF~Iq~lElW~f~ 241 (241)
T KOG2372|consen 181 SFFIYCDKDFLAFGGGGGRFGLWLDGDLLHGSSHPCETFGNEPLSDKQDFIIQDLELWGFE 241 (241)
T ss_pred ceEEEechhHhhhcCCCCceEEEecccccccccCCCcccCCcccCCcCceEEEEEEEEeeC
Confidence 5899999999999999999999999999999999999999999999999999999999985
No 2
>smart00584 TLDc domain in TBC and LysM domain containing proteins.
Probab=99.83 E-value=1.2e-20 Score=120.39 Aligned_cols=59 Identities=53% Similarity=1.135 Sum_probs=56.4
Q ss_pred eeeeeCCCeEEEccCCCCceEEEeCccCCceeecCcCCCCCCCCC-CCCeEEeEEEEEEE
Q psy4173 2 YFIKGNNESLSIGAGDGKFGLWLDGDLYQGRSEPCSTYGNEPLSP-QQDFVVKTLECWAF 60 (61)
Q Consensus 2 ~f~~~~~~~l~iGgg~g~~~l~id~~l~~G~S~~c~TF~n~~Ls~-~~~F~i~~lEvW~~ 60 (61)
+|+++++++|++|||.|+++||||++|.+|.|.+|+||+||+|+. +++|+|.+||||++
T Consensus 105 ~~~~~~~~~~~~Ggg~g~~~l~id~~l~~g~s~~~~tf~~~~L~~~~~~f~I~~iEVw~~ 164 (165)
T smart00584 105 YYINGTPDSLPIGGGGGGFGLWIDEDLNHGSSSHCKTFGNPPLSTKQEDFLILDIEVWGF 164 (165)
T ss_pred EEEecCCCeEeecCCCCceeEEEehhhCCeEeCCCCCcCCccccCCCCCEEEEEEEEEec
Confidence 799999999999999878999999999999999999999999994 78999999999997
No 3
>COG5142 OXR1 Oxidation resistance protein [DNA replication, recombination, and repair]
Probab=99.83 E-value=6.2e-21 Score=126.45 Aligned_cols=60 Identities=35% Similarity=0.638 Sum_probs=56.7
Q ss_pred eeeeeCCCeEEEccCCCCceEEEeCccCCceeecCcCCCCCCCCCCCC-eEEeEEEEEEEC
Q psy4173 2 YFIKGNNESLSIGAGDGKFGLWLDGDLYQGRSEPCSTYGNEPLSPQQD-FVVKTLECWAFI 61 (61)
Q Consensus 2 ~f~~~~~~~l~iGgg~g~~~l~id~~l~~G~S~~c~TF~n~~Ls~~~~-F~i~~lEvW~~~ 61 (61)
+=+||++++|+||||+|+||||||+.|.+|.|+||+||.|.+|+++++ |.|..||||.++
T Consensus 152 f~iYCt~~FlafG~g~grygLl~d~sLl~g~S~p~~tfgN~~Ls~~g~~f~Iv~lElW~v~ 212 (212)
T COG5142 152 FGIYCTPDFLAFGCGGGRYGLLIDKSLLDGESHPVETFGNCLLSSKGHFFRIVYLELWLVQ 212 (212)
T ss_pred eEEEEchHHhhhcCCCCcEEEEecCcccccccCCCccccccccccCCCceEEEEEEEEeeC
Confidence 458999999999999999999999999999999999999999999986 599999999874
No 4
>PF07534 TLD: TLD; InterPro: IPR006571 TLDc is a domain of unknown function, restricted to eukaryotes, and commonly found in TBC (IPR000195 from INTERPRO) and LysM (IPR002482 from INTERPRO) domain containing proteins [].; PDB: 4ACJ_A.
Probab=99.61 E-value=1.7e-15 Score=91.70 Aligned_cols=59 Identities=41% Similarity=0.846 Sum_probs=45.8
Q ss_pred eeeeeCCCeEEEccCCCCceEEEeCccCCceeecCcCCCCCCCC--CCCCeEEeEEEEEEE
Q psy4173 2 YFIKGNNESLSIGAGDGKFGLWLDGDLYQGRSEPCSTYGNEPLS--PQQDFVVKTLECWAF 60 (61)
Q Consensus 2 ~f~~~~~~~l~iGgg~g~~~l~id~~l~~G~S~~c~TF~n~~Ls--~~~~F~i~~lEvW~~ 60 (61)
.+++++..+|+||++...++||||.++.+|++.+|.||++|+|+ ..++|+|..||||++
T Consensus 78 ~~~~~~~~~~~fG~~~~~~~l~i~~~~~~~~~~~~~ty~~~~l~~~~~~~f~i~~iEV~~~ 138 (139)
T PF07534_consen 78 NYINCNNQGLGFGGGSNGFDLWIDSDFNSGSSSHSETYGNPPLSNDGQESFDIDEIEVWGL 138 (139)
T ss_dssp --EEEETTEEEES-SSSS-SEEEETTS-EEEE--BTTTTB--SS--SSSEEEEEEEEEEE-
T ss_pred eeeeccCCcceEeecCCceEEEEeCCCCcEEEeCCCccCCCcccCCCCCCcEEEEEEEEEE
Confidence 47888899999999965689999999999999999999999999 678999999999986
No 5
>KOG2801|consensus
Probab=99.52 E-value=9.6e-16 Score=109.88 Aligned_cols=59 Identities=37% Similarity=0.948 Sum_probs=54.6
Q ss_pred CeeeeeCCCeEEEccCCCCceEEEeCccCCceeecCcCCCCCCCCCCCCeEEeEEEEEEEC
Q psy4173 1 MYFIKGNNESLSIGAGDGKFGLWLDGDLYQGRSEPCSTYGNEPLSPQQDFVVKTLECWAFI 61 (61)
Q Consensus 1 ~~f~~~~~~~l~iGgg~g~~~l~id~~l~~G~S~~c~TF~n~~Ls~~~~F~i~~lEvW~~~ 61 (61)
++||.+..++|++|||+|. |||||.||.+|++..|+||+|.||+ +++|.|..+|.|+|.
T Consensus 496 smfmaggsdclivgggggq-alyidgdlnrgrtshcdtfnnqplc-senfliaaveawgfq 554 (559)
T KOG2801|consen 496 SMFMAGGSDCLIVGGGGGQ-ALYIDGDLNRGRTSHCDTFNNQPLC-SENFLIAAVEAWGFQ 554 (559)
T ss_pred HHHhcCCCceEEEcCCCce-eEEecccccCCccccccccCCCccc-hhhHHHHHHHHhcCC
Confidence 3689999999999999765 9999999999999999999999999 578999999999984
No 6
>KOG2557|consensus
Probab=99.51 E-value=1.2e-14 Score=104.45 Aligned_cols=54 Identities=33% Similarity=0.650 Sum_probs=50.3
Q ss_pred CCCeEEEccCCCCceEEEeCccCCceeec-CcCCCCCCCCCCCCeEEeEEEEEEE
Q psy4173 7 NNESLSIGAGDGKFGLWLDGDLYQGRSEP-CSTYGNEPLSPQQDFVVKTLECWAF 60 (61)
Q Consensus 7 ~~~~l~iGgg~g~~~l~id~~l~~G~S~~-c~TF~n~~Ls~~~~F~i~~lEvW~~ 60 (61)
-|++|.|||...+||||||.++..|+|.+ |+||++|.|+++++|+|..+|||++
T Consensus 324 iPNGLGmGGq~n~fgL~Id~sFg~Gqs~e~cTty~spqLSk~~~fqi~~iEvWav 378 (427)
T KOG2557|consen 324 IPNGLGMGGQINHFGLFIDASFGQGQSFECCTTYESPQLSKTSRFQIEVIEVWAV 378 (427)
T ss_pred CCCccccCcccceeeEEEEeecCCCccccccccCCCccccccccccceEEEEEec
Confidence 48999999999999999999999999995 5778899999999999999999986
No 7
>KOG4636|consensus
Probab=91.84 E-value=0.21 Score=37.13 Aligned_cols=42 Identities=19% Similarity=0.242 Sum_probs=24.0
Q ss_pred CCCeEEEccCCCCceEEEeCccCCceeecCcCCCCCCCCCCCCeEEeEEEEEEE
Q psy4173 7 NNESLSIGAGDGKFGLWLDGDLYQGRSEPCSTYGNEPLSPQQDFVVKTLECWAF 60 (61)
Q Consensus 7 ~~~~l~iGgg~g~~~l~id~~l~~G~S~~c~TF~n~~Ls~~~~F~i~~lEvW~~ 60 (61)
.+.+|.+|+-.|.--|.||++|.+=.- .--.-.|.++|||++
T Consensus 386 ~p~Gl~fg~tlgne~i~idedF~kItv------------lpveA~ildIEvWGc 427 (483)
T KOG4636|consen 386 SPYGLSFGNTLGNEEIKIDEDFDKITV------------LPVEAEILDIEVWGC 427 (483)
T ss_pred CccceecCCCCCCceeeeccchhhccc------------cchhcceeeEEEecc
Confidence 355566666555555666666644111 111235899999985
No 8
>PF10926 DUF2800: Protein of unknown function (DUF2800); InterPro: IPR021229 This entry is represented by Bacteriophage APSE-1, protein 51. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of uncharacterised proteins found in bacteria and viruses. Some members of this family are annotated as being Phi APSE P51-like proteins.
Probab=51.23 E-value=11 Score=27.41 Aligned_cols=37 Identities=27% Similarity=0.314 Sum_probs=29.5
Q ss_pred eeCCCeEEEccCCCCceEEEeCccCCceeecCcCCCCCCCCC
Q psy4173 5 KGNNESLSIGAGDGKFGLWLDGDLYQGRSEPCSTYGNEPLSP 46 (61)
Q Consensus 5 ~~~~~~l~iGgg~g~~~l~id~~l~~G~S~~c~TF~n~~Ls~ 46 (61)
+++.|.++|+.+ -|.|- ||.+|..-+...-+||+|--
T Consensus 115 fGT~D~vii~~~----~L~Ii-DlKyG~GV~V~Ae~NpQl~l 151 (372)
T PF10926_consen 115 FGTADCVIIADD----TLHII-DLKYGKGVPVSAEENPQLML 151 (372)
T ss_pred CCceeEEEEeCC----eEEEE-ECCCCCCCcccCCCCHHHHH
Confidence 467788888854 56666 89999999999999999863
No 9
>PF11029 DAZAP2: DAZ associated protein 2 (DAZAP2); InterPro: IPR022730 DAZ associated protein 2 has a highly conserved sequence throughout evolution including a conserved polyproline region and several SH2/SH3 binding sites. It occurs as a single copy gene with a four-exon organisation and is located on chromosome 12. It encodes a ubiquitously expressed protein and binds to DAZ and DAZL1 through DAZ repeats [, ].
Probab=39.35 E-value=15 Score=23.54 Aligned_cols=17 Identities=29% Similarity=0.814 Sum_probs=13.2
Q ss_pred CCCeEEEccCCCCceEE
Q psy4173 7 NNESLSIGAGDGKFGLW 23 (61)
Q Consensus 7 ~~~~l~iGgg~g~~~l~ 23 (61)
.++.+..||++|.|.||
T Consensus 121 kK~~Ff~GGs~gGyt~W 137 (137)
T PF11029_consen 121 KKRSFFTGGSDGGYTIW 137 (137)
T ss_pred eccCeecccCCCceecC
Confidence 35677788888888887
No 10
>PRK00536 speE spermidine synthase; Provisional
Probab=34.88 E-value=20 Score=24.75 Aligned_cols=11 Identities=27% Similarity=0.135 Sum_probs=9.2
Q ss_pred CCeEEEccCCC
Q psy4173 8 NESLSIGAGDG 18 (61)
Q Consensus 8 ~~~l~iGgg~g 18 (61)
.+-|++|||+|
T Consensus 74 k~VLIiGGGDG 84 (262)
T PRK00536 74 KEVLIVDGFDL 84 (262)
T ss_pred CeEEEEcCCch
Confidence 56789999987
No 11
>PF07177 Neuralized: Neuralized; InterPro: IPR006573 NEUZ is a domain of unknown function found in neuralized proteins, i.e. proteins involved in the specification of the neuroblast during cellular differentiation. ; PDB: 2YUE_A 2E63_A.
Probab=33.00 E-value=22 Score=19.73 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=14.5
Q ss_pred CcCCCCCCCCCCCCeEEeEEEE
Q psy4173 36 CSTYGNEPLSPQQDFVVKTLEC 57 (61)
Q Consensus 36 c~TF~n~~Ls~~~~F~i~~lEv 57 (61)
.-+|.+.||..++.|.|+-.|+
T Consensus 31 giVFS~rPl~~~E~~~v~I~~~ 52 (69)
T PF07177_consen 31 GIVFSSRPLRIGEKFEVRIDEV 52 (69)
T ss_dssp -EEEESS-B-TT-EEEEEEEEE
T ss_pred eEEEecCCccCCCEEEEEEEec
Confidence 3577889999999998877665
No 12
>KOG0042|consensus
Probab=31.71 E-value=43 Score=26.51 Aligned_cols=30 Identities=37% Similarity=0.501 Sum_probs=20.4
Q ss_pred CCeEEEccCCCCceEEEe-------------CccCCceeecCc
Q psy4173 8 NESLSIGAGDGKFGLWLD-------------GDLYQGRSEPCS 37 (61)
Q Consensus 8 ~~~l~iGgg~g~~~l~id-------------~~l~~G~S~~c~ 37 (61)
-|-|+||||....|--+| +||..|.|++++
T Consensus 68 fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSSkST 110 (680)
T KOG0042|consen 68 FDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSSKST 110 (680)
T ss_pred ccEEEECCCccCcceeehhhcccceeEEEecccccCCccccch
Confidence 578999999644455555 466777776653
No 13
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=27.00 E-value=29 Score=23.15 Aligned_cols=22 Identities=27% Similarity=0.599 Sum_probs=14.0
Q ss_pred eCCCeEEEccCCCCceEEEeCcc
Q psy4173 6 GNNESLSIGAGDGKFGLWLDGDL 28 (61)
Q Consensus 6 ~~~~~l~iGgg~g~~~l~id~~l 28 (61)
.+.+.++||.| |.||+---..|
T Consensus 119 pe~~~~aIGSG-gnyAl~AarAl 140 (178)
T COG5405 119 PEDDIIAIGSG-GNYALSAARAL 140 (178)
T ss_pred CCCCeEEEcCC-chHHHHHHHHH
Confidence 34568999999 56776433333
No 14
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=24.04 E-value=88 Score=18.07 Aligned_cols=30 Identities=20% Similarity=0.375 Sum_probs=21.9
Q ss_pred eEEEeCccCCceeecCcCCCCCCCCCCCCeE
Q psy4173 21 GLWLDGDLYQGRSEPCSTYGNEPLSPQQDFV 51 (61)
Q Consensus 21 ~l~id~~l~~G~S~~c~TF~n~~Ls~~~~F~ 51 (61)
=|++|..... .+..-.||..|+|.....|.
T Consensus 14 kl~v~G~~t~-~~G~~R~F~T~~L~~G~~y~ 43 (75)
T TIGR03000 14 KLKVDGKETN-GTGTVRTFTTPPLEAGKEYE 43 (75)
T ss_pred EEEECCeEcc-cCccEEEEECCCCCCCCEEE
Confidence 4666665544 35566899999999988776
No 15
>PF12248 Methyltransf_FA: Farnesoic acid 0-methyl transferase; InterPro: IPR022041 This domain, found in farnesoic acid O-methyl transferase, is approximately 110 amino acids in length. Farnesoic acid O-methyl transferase (FAMeT) is the enzyme that catalyses the formation of methyl farnesoate (MF) from farnesoic acid (FA) in the biosynthetic pathway of juvenile hormone (JH) [].
Probab=23.07 E-value=1.7e+02 Score=16.95 Aligned_cols=43 Identities=7% Similarity=0.040 Sum_probs=25.0
Q ss_pred eEEEccCCCCceEEEeCccCCceeecCcCCCCCCCCCCCCeEEeEEE
Q psy4173 10 SLSIGAGDGKFGLWLDGDLYQGRSEPCSTYGNEPLSPQQDFVVKTLE 56 (61)
Q Consensus 10 ~l~iGgg~g~~~l~id~~l~~G~S~~c~TF~n~~Ls~~~~F~i~~lE 56 (61)
-|+|||..+. -..|-..-. ..+-.+...|.|.+..+|.---|+
T Consensus 18 eIviGg~~Nt-~s~Irr~~~---~~~~~~~~t~~ils~~e~~~fwI~ 60 (102)
T PF12248_consen 18 EIVIGGWGNT-KSVIRRQKR---GPDLVSVSTPGILSPSEFRMFWIS 60 (102)
T ss_pred EEEEecCCCc-eEEEEEccC---CccEEEecCCCcCCCCccEEEEEE
Confidence 5889998543 455544433 344466778887665554433333
Done!