Query psy4173
Match_columns 61
No_of_seqs 109 out of 400
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 18:44:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4173.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4173hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4acj_A WU\:FB25H12 protein,; i 99.9 4.8E-27 1.6E-31 150.1 6.8 61 1-61 107-167 (167)
2 1oq1_A Protein YESU; structura 28.2 85 0.0029 20.7 4.1 41 20-60 172-220 (223)
3 3o4f_A Spermidine synthase; am 19.1 42 0.0014 22.5 1.2 11 8-18 85-95 (294)
4 2kr7_A FKBP-type peptidyl-prol 18.8 82 0.0028 18.6 2.4 22 37-58 122-145 (151)
5 3pr9_A FKBP-type peptidyl-prol 17.7 87 0.003 18.9 2.4 25 35-59 124-150 (157)
6 4dt4_A FKBP-type 16 kDa peptid 15.9 1E+02 0.0035 18.9 2.4 21 37-57 141-163 (169)
7 2eqm_A PHD finger protein 20-l 14.8 1.1E+02 0.0037 16.9 2.1 26 32-57 2-28 (88)
8 2knc_B Integrin beta-3; transm 14.5 81 0.0028 17.2 1.5 13 33-45 65-77 (79)
9 2zdj_A Hypothetical protein TT 14.0 1E+02 0.0036 16.7 1.8 8 53-60 47-54 (69)
10 2k8i_A SLYD, peptidyl-prolyl C 13.8 99 0.0034 18.8 1.9 18 41-58 122-140 (171)
No 1
>4acj_A WU\:FB25H12 protein,; immune system; 0.97A {Danio rerio}
Probab=99.94 E-value=4.8e-27 Score=150.08 Aligned_cols=61 Identities=54% Similarity=1.172 Sum_probs=59.0
Q ss_pred CeeeeeCCCeEEEccCCCCceEEEeCccCCceeecCcCCCCCCCCCCCCeEEeEEEEEEEC
Q psy4173 1 MYFIKGNNESLSIGAGDGKFGLWLDGDLYQGRSEPCSTYGNEPLSPQQDFVVKTLECWAFI 61 (61)
Q Consensus 1 ~~f~~~~~~~l~iGgg~g~~~l~id~~l~~G~S~~c~TF~n~~Ls~~~~F~i~~lEvW~~~ 61 (61)
.+||+|++++|+||||+|++|||||++|.+|+|.+|+||+||||+++++|+|++||||+|+
T Consensus 107 ~~f~~~~~~~l~~Ggg~g~~~L~id~~l~~G~s~~c~Tf~n~~L~~~~~F~i~~vEvW~~~ 167 (167)
T 4acj_A 107 LFFIKGDMDSLAFGGGSGEFGLWLDGDLYHGRNHSCKTFGNPMLSMKEDFFVQDIEIWSFE 167 (167)
T ss_dssp CCCEEEETTEEEESCSSSSCSEEEETTSCEEEECCBTTTTBCCSSSSSEEEEEEEEEEECC
T ss_pred ceEEEeCCCccccCCCCCceEEEEeCCCCCEEeCCCCCCCCcccCCCCceEEEEEEEEEEC
Confidence 4799999999999999999999999999999999999999999999999999999999986
No 2
>1oq1_A Protein YESU; structural genomics, singleton, PSI, protein structure initi midwest center for structural genomics, MCSG, unknown funct; 1.70A {Bacillus subtilis} SCOP: b.29.1.17
Probab=28.22 E-value=85 Score=20.67 Aligned_cols=41 Identities=15% Similarity=0.050 Sum_probs=31.9
Q ss_pred ceEEEeCccCCceeecCcCCCCCCCCC-------CCC-eEEeEEEEEEE
Q psy4173 20 FGLWLDGDLYQGRSEPCSTYGNEPLSP-------QQD-FVVKTLECWAF 60 (61)
Q Consensus 20 ~~l~id~~l~~G~S~~c~TF~n~~Ls~-------~~~-F~i~~lEvW~~ 60 (61)
-..|||....--++.+-++|+.+.=.. ... +.+.+++||.+
T Consensus 172 v~f~vNg~~lF~~~D~~~~~g~~~~~G~fGfR~m~~~~~~y~nf~V~~l 220 (223)
T 1oq1_A 172 VHFSINGLPILEWMDDGSTYGPVLTKGKIGFRQMAPMKAVYRDFAVHQA 220 (223)
T ss_dssp EEEEETTEEEEEEECCSSSSSSCCCSBEEEEEEETTCEEEEEEEEEEEE
T ss_pred EEEEECCEEEEEeeCCCcccCCCCCCceEEEEecchhhhhccceEEEec
Confidence 567888888888888888887655443 255 79999999986
No 3
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=19.12 E-value=42 Score=22.52 Aligned_cols=11 Identities=55% Similarity=0.951 Sum_probs=8.4
Q ss_pred CCeEEEccCCC
Q psy4173 8 NESLSIGAGDG 18 (61)
Q Consensus 8 ~~~l~iGgg~g 18 (61)
.+-|++|||+|
T Consensus 85 k~VLIiGgGdG 95 (294)
T 3o4f_A 85 KHVLIIGGGDG 95 (294)
T ss_dssp CEEEEESCTTS
T ss_pred CeEEEECCCch
Confidence 45688899887
No 4
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=18.82 E-value=82 Score=18.64 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=16.5
Q ss_pred cCCC-CCCCCCCC-CeEEeEEEEE
Q psy4173 37 STYG-NEPLSPQQ-DFVVKTLECW 58 (61)
Q Consensus 37 ~TF~-n~~Ls~~~-~F~i~~lEvW 58 (61)
-|.| |-||+... .|+|.-+||-
T Consensus 122 v~vD~NHPLAG~~L~F~v~v~~v~ 145 (151)
T 2kr7_A 122 VMVDYNHPLAGKTLAFRFKVLGFR 145 (151)
T ss_dssp EEEEECCTTSCCCEEEEEEEEEEE
T ss_pred EEEECCCcCCCCEEEEEEEEEEee
Confidence 4555 88999876 7888888773
No 5
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A
Probab=17.73 E-value=87 Score=18.87 Aligned_cols=25 Identities=16% Similarity=0.142 Sum_probs=18.5
Q ss_pred cCcCCC-CCCCCCCC-CeEEeEEEEEE
Q psy4173 35 PCSTYG-NEPLSPQQ-DFVVKTLECWA 59 (61)
Q Consensus 35 ~c~TF~-n~~Ls~~~-~F~i~~lEvW~ 59 (61)
..-|.| |-||+.+. .|+|.-+||-.
T Consensus 124 ~~V~vD~NHPLAG~~L~F~v~v~~v~~ 150 (157)
T 3pr9_A 124 GRVLVDFNHELAGKEVKYRIKIEEVVD 150 (157)
T ss_dssp TEEEEECSCTTTTCCEEEEEEEEEEEC
T ss_pred CEEEEECCCccCCCeEEEEEEEEEEEe
Confidence 345556 88999876 79998888854
No 6
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=15.85 E-value=1e+02 Score=18.89 Aligned_cols=21 Identities=38% Similarity=0.525 Sum_probs=16.0
Q ss_pred cCCC-CCCCCCCC-CeEEeEEEE
Q psy4173 37 STYG-NEPLSPQQ-DFVVKTLEC 57 (61)
Q Consensus 37 ~TF~-n~~Ls~~~-~F~i~~lEv 57 (61)
-|.| |-||+.+. .|+|.-+||
T Consensus 141 V~vD~NHPLAGk~L~F~vev~~v 163 (169)
T 4dt4_A 141 ITVDFNHPLAGQTVHFDIEVLEI 163 (169)
T ss_dssp EEEECSCTTTTCCEEEEEEEEEE
T ss_pred EEEeCCCccCCCEEEEEEEEEEE
Confidence 4555 78899876 788888877
No 7
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=14.75 E-value=1.1e+02 Score=16.90 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=11.7
Q ss_pred eeecCcCCCCCCCCCCCCeEE-eEEEE
Q psy4173 32 RSEPCSTYGNEPLSPQQDFVV-KTLEC 57 (61)
Q Consensus 32 ~S~~c~TF~n~~Ls~~~~F~i-~~lEv 57 (61)
.|.....+.-||-.....|++ ..||+
T Consensus 2 ~~~~~~~~~~~~~~~~~~F~vGmkLEA 28 (88)
T 2eqm_A 2 SSGSSGMSKKPPNRPGITFEIGARLEA 28 (88)
T ss_dssp CCCCCSCTTSCCSCSSCCCCSSCEEEE
T ss_pred CCCcCCcccCCCCCCcCcCCCCCEEEE
Confidence 344444444444444455554 34443
No 8
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=14.51 E-value=81 Score=17.20 Aligned_cols=13 Identities=31% Similarity=0.340 Sum_probs=9.8
Q ss_pred eecCcCCCCCCCC
Q psy4173 33 SEPCSTYGNEPLS 45 (61)
Q Consensus 33 S~~c~TF~n~~Ls 45 (61)
-+|.+||.||.-.
T Consensus 65 k~~ttt~~nP~~~ 77 (79)
T 2knc_B 65 KEATSTFTNITYR 77 (79)
T ss_dssp HHCSCCSCCCSCC
T ss_pred cCCccCccCCCcC
Confidence 3578899998654
No 9
>2zdj_A Hypothetical protein TTMA177; alpha and beta proteins (A+B), cystatin-like, NPPSFA; 2.20A {Thermus thermophilus phage tma}
Probab=13.95 E-value=1e+02 Score=16.68 Aligned_cols=8 Identities=25% Similarity=0.630 Sum_probs=5.9
Q ss_pred eEEEEEEE
Q psy4173 53 KTLECWAF 60 (61)
Q Consensus 53 ~~lEvW~~ 60 (61)
...|||++
T Consensus 47 dY~EVWg~ 54 (69)
T 2zdj_A 47 DYEEVWGI 54 (69)
T ss_dssp EEEEEEEE
T ss_pred Chhhhccc
Confidence 35799986
No 10
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}
Probab=13.81 E-value=99 Score=18.84 Aligned_cols=18 Identities=28% Similarity=0.329 Sum_probs=14.1
Q ss_pred CCCCCCCC-CeEEeEEEEE
Q psy4173 41 NEPLSPQQ-DFVVKTLECW 58 (61)
Q Consensus 41 n~~Ls~~~-~F~i~~lEvW 58 (61)
|-||+.+. .|+|.-+||-
T Consensus 122 NHPLAGk~L~F~vev~~v~ 140 (171)
T 2k8i_A 122 NHMLAGQNLKFNVEVVAIR 140 (171)
T ss_dssp CCSSCCCEEEEEEEEEEEE
T ss_pred CCCCCCCeEEEEEEEEEec
Confidence 77898775 7988888873
Done!