Query psy4173
Match_columns 61
No_of_seqs 109 out of 400
Neff 5.9
Searched_HMMs 13730
Date Fri Aug 16 18:44:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4173.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4173hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2hoea2 c.55.1.10 (A:200-368) 36.0 6.4 0.00047 21.6 1.2 30 11-41 7-36 (169)
2 d2ap1a1 c.55.1.10 (A:118-303) 31.5 4.2 0.00031 22.5 -0.2 27 10-37 10-36 (186)
3 d2gupa2 c.55.1.10 (A:115-289) 31.5 4.2 0.00031 22.5 -0.2 26 10-36 6-31 (175)
4 d1xc3a2 c.55.1.10 (A:119-294) 30.7 6.7 0.00049 21.8 0.6 23 10-33 7-29 (176)
5 d1z05a2 c.55.1.10 (A:209-405) 24.9 17 0.0013 20.2 1.8 30 10-40 7-36 (197)
6 d1z6ra3 c.55.1.10 (A:211-406) 22.9 15 0.0011 20.5 1.1 29 10-39 7-35 (196)
7 d1vsra_ c.52.1.15 (A:) Very sh 21.8 34 0.0024 19.3 2.6 22 19-42 36-57 (134)
8 d1pjza_ c.66.1.36 (A:) Thiopur 20.9 3.3 0.00024 22.5 -2.1 18 8-25 22-39 (201)
9 d2aa4a2 c.55.1.10 (A:120-289) 18.5 15 0.0011 19.9 0.5 25 10-35 7-31 (170)
10 d2bcgg1 c.3.1.3 (G:5-301) Guan 16.4 29 0.0021 18.1 1.3 13 5-17 3-15 (297)
No 1
>d2hoea2 c.55.1.10 (A:200-368) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}
Probab=35.99 E-value=6.4 Score=21.64 Aligned_cols=30 Identities=33% Similarity=0.671 Sum_probs=21.7
Q ss_pred EEEccCCCCceEEEeCccCCceeecCcCCCC
Q psy4173 11 LSIGAGDGKFGLWLDGDLYQGRSEPCSTYGN 41 (61)
Q Consensus 11 l~iGgg~g~~~l~id~~l~~G~S~~c~TF~n 41 (61)
|.+|-|-| .|+++|..+.+|.....--+..
T Consensus 7 i~~g~GiG-~gii~~g~l~~G~~g~aGEiGh 36 (169)
T d2hoea2 7 ILTGKGIG-AGIIIDGELYRGENGYAGEIGY 36 (169)
T ss_dssp EEESSSCE-EEEEETTEECCCSSSCCCCGGG
T ss_pred EEECCceE-EEEEECCEEEeCCCCCCccccc
Confidence 55666655 4999999999998765544443
No 2
>d2ap1a1 c.55.1.10 (A:118-303) Putative regulator protein YcfX {Salmonella typhimurium [TaxId: 90371]}
Probab=31.51 E-value=4.2 Score=22.53 Aligned_cols=27 Identities=37% Similarity=0.506 Sum_probs=21.4
Q ss_pred eEEEccCCCCceEEEeCccCCceeecCc
Q psy4173 10 SLSIGAGDGKFGLWLDGDLYQGRSEPCS 37 (61)
Q Consensus 10 ~l~iGgg~g~~~l~id~~l~~G~S~~c~ 37 (61)
.|.+|-|-| .|+.+|..+.+|.....-
T Consensus 10 ~l~~GtGiG-~giv~nG~l~~G~~g~AG 36 (186)
T d2ap1a1 10 GLILGTGVG-GGLVLNGKPITGQSYITG 36 (186)
T ss_dssp EEEESSSEE-EEEEETTEEECCTTSCTT
T ss_pred EEEEccCeE-EEEEECCEEEeCCCCCCc
Confidence 578888866 499999999999866543
No 3
>d2gupa2 c.55.1.10 (A:115-289) Hypothetical protein SP2142 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=31.49 E-value=4.2 Score=22.53 Aligned_cols=26 Identities=31% Similarity=0.493 Sum_probs=20.4
Q ss_pred eEEEccCCCCceEEEeCccCCceeecC
Q psy4173 10 SLSIGAGDGKFGLWLDGDLYQGRSEPC 36 (61)
Q Consensus 10 ~l~iGgg~g~~~l~id~~l~~G~S~~c 36 (61)
.|.+|-|-| .|+.+|..+.+|.+...
T Consensus 6 ~vtlGtGiG-~giv~ng~l~~G~~g~A 31 (175)
T d2gupa2 6 CVVIGTGIG-GAMIINGRLHRGRHGLG 31 (175)
T ss_dssp EEEESSSEE-EEEEETTEEECCTTSCT
T ss_pred EEEEeccee-EEEEECCEEEECCCCCc
Confidence 477888866 49999999999876543
No 4
>d1xc3a2 c.55.1.10 (A:119-294) Putative fructokinase YhdR {Bacillus subtilis [TaxId: 1423]}
Probab=30.68 E-value=6.7 Score=21.77 Aligned_cols=23 Identities=43% Similarity=0.729 Sum_probs=18.4
Q ss_pred eEEEccCCCCceEEEeCccCCcee
Q psy4173 10 SLSIGAGDGKFGLWLDGDLYQGRS 33 (61)
Q Consensus 10 ~l~iGgg~g~~~l~id~~l~~G~S 33 (61)
+|.+|-|-|. |+.+|..+.+|.+
T Consensus 7 ~l~lGtGiG~-gii~ng~l~~G~~ 29 (176)
T d1xc3a2 7 YITIGTGIGA-GAIVEGRLLQGLS 29 (176)
T ss_dssp EEEESSSEEE-EEEETTEECCSSS
T ss_pred EEEEccCeEE-EEEECCEEeeCCC
Confidence 4668888664 9999999999964
No 5
>d1z05a2 c.55.1.10 (A:209-405) Transcriptional regulator VC2007 {Vibrio cholerae [TaxId: 666]}
Probab=24.92 E-value=17 Score=20.22 Aligned_cols=30 Identities=40% Similarity=0.591 Sum_probs=21.4
Q ss_pred eEEEccCCCCceEEEeCccCCceeecCcCCC
Q psy4173 10 SLSIGAGDGKFGLWLDGDLYQGRSEPCSTYG 40 (61)
Q Consensus 10 ~l~iGgg~g~~~l~id~~l~~G~S~~c~TF~ 40 (61)
.|.+|-|-| .|+.+|..+.+|.+...--+.
T Consensus 7 ~i~igtGiG-~giv~~g~l~~G~~g~AGEiG 36 (197)
T d1z05a2 7 LISIHHGLG-AGIVLDGRVLQGRHGNIGELG 36 (197)
T ss_dssp EEEESSSEE-EEEEETTEECCTTTTCTTBCT
T ss_pred EEEECCCEE-EEEEECCEEEeCCCCCCcccc
Confidence 366777755 499999999998766544443
No 6
>d1z6ra3 c.55.1.10 (A:211-406) Mlc protein {Escherichia coli [TaxId: 562]}
Probab=22.92 E-value=15 Score=20.48 Aligned_cols=29 Identities=24% Similarity=0.315 Sum_probs=20.7
Q ss_pred eEEEccCCCCceEEEeCccCCceeecCcCC
Q psy4173 10 SLSIGAGDGKFGLWLDGDLYQGRSEPCSTY 39 (61)
Q Consensus 10 ~l~iGgg~g~~~l~id~~l~~G~S~~c~TF 39 (61)
.|.+|-|-| .|+.+|..+.+|.+...-.+
T Consensus 7 ~i~ig~GiG-~gii~ng~l~~G~~g~aGEi 35 (196)
T d1z6ra3 7 QVVIDHNVG-AGVITDGHLLHAGSSSLVEI 35 (196)
T ss_dssp EEEESSSEE-EEEEETTEETTTTSSCCBCG
T ss_pred EEEECCCeE-EEEEECCEEEECCCCCCccc
Confidence 356666655 59999999999987644333
No 7
>d1vsra_ c.52.1.15 (A:) Very short patch repair (VSR) endonuclease {Escherichia coli [TaxId: 562]}
Probab=21.76 E-value=34 Score=19.31 Aligned_cols=22 Identities=9% Similarity=0.342 Sum_probs=18.3
Q ss_pred CceEEEeCccCCceeecCcCCCCC
Q psy4173 19 KFGLWLDGDLYQGRSEPCSTYGNE 42 (61)
Q Consensus 19 ~~~l~id~~l~~G~S~~c~TF~n~ 42 (61)
+.+++||.++=+|+ +|.-+..|
T Consensus 36 k~aIfvdGcFWH~h--~c~~~~~P 57 (134)
T d1vsra_ 36 RCVIFTHGCFWHHH--HCYLFKVP 57 (134)
T ss_dssp TEEEEEECTTTTTC--SSTTCCCC
T ss_pred cEEEEEcCccccCC--CccccCCC
Confidence 46999999999988 78777666
No 8
>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}
Probab=20.94 E-value=3.3 Score=22.53 Aligned_cols=18 Identities=22% Similarity=0.246 Sum_probs=13.0
Q ss_pred CCeEEEccCCCCceEEEe
Q psy4173 8 NESLSIGAGDGKFGLWLD 25 (61)
Q Consensus 8 ~~~l~iGgg~g~~~l~id 25 (61)
..-|-+|||.|+.++|+-
T Consensus 22 ~rvLd~GCG~G~~a~~la 39 (201)
T d1pjza_ 22 ARVLVPLCGKSQDMSWLS 39 (201)
T ss_dssp CEEEETTTCCSHHHHHHH
T ss_pred CEEEEecCcCCHHHHHHH
Confidence 346788999887776664
No 9
>d2aa4a2 c.55.1.10 (A:120-289) N-acetylmannosamine kinase NanK {Escherichia coli [TaxId: 562]}
Probab=18.46 E-value=15 Score=19.94 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=18.2
Q ss_pred eEEEccCCCCceEEEeCccCCceeec
Q psy4173 10 SLSIGAGDGKFGLWLDGDLYQGRSEP 35 (61)
Q Consensus 10 ~l~iGgg~g~~~l~id~~l~~G~S~~ 35 (61)
.|.+|-|-| .|+++|..+.+|.+..
T Consensus 7 ~i~~g~GiG-~giv~ng~l~~G~~g~ 31 (170)
T d2aa4a2 7 FITVSTGVG-GGVVSGCKLLTGPGGL 31 (170)
T ss_dssp EEEESSSEE-EEEEETTEEECCTTSC
T ss_pred EEEECCCEE-EEEEECCEEEECCCCC
Confidence 355666655 4899999999887653
No 10
>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=16.35 E-value=29 Score=18.10 Aligned_cols=13 Identities=15% Similarity=0.424 Sum_probs=9.6
Q ss_pred eeCCCeEEEccCC
Q psy4173 5 KGNNESLSIGAGD 17 (61)
Q Consensus 5 ~~~~~~l~iGgg~ 17 (61)
..+-|-++||+|-
T Consensus 3 ~~~yDviViGaG~ 15 (297)
T d2bcgg1 3 DTDYDVIVLGTGI 15 (297)
T ss_dssp CCBCSEEEECCSH
T ss_pred CCcCCEEEECcCH
Confidence 3456779999994
Done!