RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy4173
         (61 letters)



>4acj_A WU\:FB25H12 protein,; immune system; 0.97A {Danio rerio}
          Length = 167

 Score = 67.5 bits (164), Expect = 2e-16
 Identities = 33/60 (55%), Positives = 46/60 (76%)

Query: 1   MYFIKGNNESLSIGAGDGKFGLWLDGDLYQGRSEPCSTYGNEPLSPQQDFVVKTLECWAF 60
           ++FIKG+ +SL+ G G G+FGLWLDGDLY GR+  C T+GN  LS ++DF V+ +E W+F
Sbjct: 107 LFFIKGDMDSLAFGGGSGEFGLWLDGDLYHGRNHSCKTFGNPMLSMKEDFFVQDIEIWSF 166


>3gne_A Val-1; alginate lyase, polysaccharide lyase family 14, chlorella VI
           lyase; HET: FLC; 1.20A {Chlorella virus} PDB: 3a0n_A*
           3im0_A*
          Length = 252

 Score = 23.1 bits (49), Expect = 8.8
 Identities = 6/25 (24%), Positives = 10/25 (40%)

Query: 4   IKGNNESLSIGAGDGKFGLWLDGDL 28
            K N     I   DG+  + ++G  
Sbjct: 172 TKMNTFKNGIPQLDGESYVIVNGKK 196


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.319    0.141    0.462 

Gapped
Lambda     K      H
   0.267   0.0488    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 899,358
Number of extensions: 36436
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 2
Length of query: 61
Length of database: 6,701,793
Length adjustment: 32
Effective length of query: 29
Effective length of database: 5,808,321
Effective search space: 168441309
Effective search space used: 168441309
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.0 bits)