RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4173
         (61 letters)



>d1eg1a_ b.29.1.10 (A:) Cellobiohydrolase I (cellulase,
           Endoglucanase I, CBH1) {Trichoderma reesei,
           Endoglucanase I [TaxId: 51453]}
          Length = 371

 Score = 25.9 bits (57), Expect = 0.29
 Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 4/33 (12%)

Query: 11  LSIGAGDGKFGLWLDGDLYQGRSEPCSTYGNEP 43
            SI   + ++  WLD     G + PCS+    P
Sbjct: 317 FSIWNDNSQYMNWLDS----GNAGPCSSTEGNP 345


>d1ojja_ b.29.1.10 (A:) Cellobiohydrolase I (cellulase,
           Endoglucanase I, CBH1) {Humicola insolens, Cel7b [TaxId:
           34413]}
          Length = 399

 Score = 25.5 bits (56), Expect = 0.42
 Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 4/33 (12%)

Query: 11  LSIGAGDGKFGLWLDGDLYQGRSEPCSTYGNEP 43
           +SI    G    WLD     G + PC+     P
Sbjct: 344 MSIWWDQGGNMEWLDH----GEAGPCAKGEGAP 372


>d3ovwa_ b.29.1.10 (A:) Cellobiohydrolase I (cellulase,
           Endoglucanase I, CBH1) {Fusarium oxysporum [TaxId:
           5507]}
          Length = 400

 Score = 24.8 bits (54), Expect = 0.59
 Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 4/33 (12%)

Query: 11  LSIGAGDGKFGLWLDGDLYQGRSEPCSTYGNEP 43
           +S+   +G F  WLD     G + PC     +P
Sbjct: 344 MSVWWSEGDFMAWLDQ----GVAGPCDATEGDP 372


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.141    0.462 

Gapped
Lambda     K      H
   0.267   0.0637    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 230,796
Number of extensions: 7769
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 3
Length of query: 61
Length of database: 2,407,596
Length adjustment: 31
Effective length of query: 30
Effective length of database: 1,981,966
Effective search space: 59458980
Effective search space used: 59458980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.1 bits)