BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4179
(89 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q24311|CUL1_DROME Cullin homolog 1 OS=Drosophila melanogaster GN=lin19 PE=1 SV=2
Length = 774
Score = 149 bits (375), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 72/89 (80%), Positives = 78/89 (87%)
Query: 1 MKTELKLEQETTHKHIEEDRKLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVH 60
+KTELK+EQET HKHIEEDRKLLIQAAIVRIMKMRK L H L++EVLNQ+S RFKP+V
Sbjct: 686 LKTELKVEQETVHKHIEEDRKLLIQAAIVRIMKMRKRLNHTNLISEVLNQLSTRFKPKVP 745
Query: 61 VIKKCIDILIEKEYLERTETHKDMYHYLA 89
VIKKCIDILIEKEYLER E HKD Y YLA
Sbjct: 746 VIKKCIDILIEKEYLERMEGHKDTYSYLA 774
>sp|Q9WTX6|CUL1_MOUSE Cullin-1 OS=Mus musculus GN=Cul1 PE=1 SV=1
Length = 776
Score = 144 bits (363), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/89 (80%), Positives = 77/89 (86%)
Query: 1 MKTELKLEQETTHKHIEEDRKLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVH 60
MKTE K EQETTHK+IEEDRKLLIQAAIVRIMKMRK L+HQQL+ EVL Q+S RFKPRV
Sbjct: 688 MKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVP 747
Query: 61 VIKKCIDILIEKEYLERTETHKDMYHYLA 89
VIKKCIDILIEKEYLER + KD Y YLA
Sbjct: 748 VIKKCIDILIEKEYLERVDGEKDTYSYLA 776
>sp|Q5R4G6|CUL1_PONAB Cullin-1 OS=Pongo abelii GN=CUL1 PE=2 SV=1
Length = 776
Score = 144 bits (363), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/89 (80%), Positives = 77/89 (86%)
Query: 1 MKTELKLEQETTHKHIEEDRKLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVH 60
MKTE K EQETTHK+IEEDRKLLIQAAIVRIMKMRK L+HQQL+ EVL Q+S RFKPRV
Sbjct: 688 MKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVP 747
Query: 61 VIKKCIDILIEKEYLERTETHKDMYHYLA 89
VIKKCIDILIEKEYLER + KD Y YLA
Sbjct: 748 VIKKCIDILIEKEYLERVDGEKDTYSYLA 776
>sp|Q13616|CUL1_HUMAN Cullin-1 OS=Homo sapiens GN=CUL1 PE=1 SV=2
Length = 776
Score = 144 bits (363), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/89 (80%), Positives = 77/89 (86%)
Query: 1 MKTELKLEQETTHKHIEEDRKLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVH 60
MKTE K EQETTHK+IEEDRKLLIQAAIVRIMKMRK L+HQQL+ EVL Q+S RFKPRV
Sbjct: 688 MKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVP 747
Query: 61 VIKKCIDILIEKEYLERTETHKDMYHYLA 89
VIKKCIDILIEKEYLER + KD Y YLA
Sbjct: 748 VIKKCIDILIEKEYLERVDGEKDTYSYLA 776
>sp|O60999|CUL1_DICDI Cullin-1 OS=Dictyostelium discoideum GN=culA PE=1 SV=1
Length = 770
Score = 112 bits (280), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 68/87 (78%)
Query: 3 TELKLEQETTHKHIEEDRKLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVI 62
T++K E ++ HK +EEDRKL IQAAIVRIMKMRK L H L+ EV++Q+ RF P+V++I
Sbjct: 684 TQVKEEIDSIHKTVEEDRKLQIQAAIVRIMKMRKQLAHSGLMTEVISQLQTRFNPKVNII 743
Query: 63 KKCIDILIEKEYLERTETHKDMYHYLA 89
KKCIDILIEKEYL R E KD Y Y+A
Sbjct: 744 KKCIDILIEKEYLMRVEGKKDHYSYVA 770
>sp|Q17389|CUL1_CAEEL Cullin-1 OS=Caenorhabditis elegans GN=cul-1 PE=1 SV=1
Length = 780
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/89 (58%), Positives = 66/89 (74%)
Query: 1 MKTELKLEQETTHKHIEEDRKLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVH 60
MK + + E K++EEDRK +I A IVRIMK RK +QHQQL+ EV+ Q+S RFKP+V
Sbjct: 692 MKQDAVRDTENVQKNVEEDRKSVISACIVRIMKTRKRVQHQQLMTEVITQLSGRFKPKVE 751
Query: 61 VIKKCIDILIEKEYLERTETHKDMYHYLA 89
+IK+CI LIEKEY+ RTE KD+Y YLA
Sbjct: 752 MIKRCIGSLIEKEYMLRTEGQKDLYEYLA 780
>sp|O13790|CUL1_SCHPO Cullin-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cul1 PE=1 SV=1
Length = 767
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/89 (60%), Positives = 67/89 (75%), Gaps = 2/89 (2%)
Query: 1 MKTELKLEQETTHKHIEEDRKLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVH 60
+++E K E THK IEEDRKLL+Q+AIVRIMK R+TL+H LV E ++QI RF P+V
Sbjct: 681 IRSEQKQESLETHKTIEEDRKLLLQSAIVRIMKARRTLKHVVLVKETIDQIKSRFTPKVS 740
Query: 61 VIKKCIDILIEKEYLERTETHKDMYHYLA 89
IK+CID+LIEKEYLER +D Y YLA
Sbjct: 741 DIKQCIDMLIEKEYLER--QGRDEYIYLA 767
>sp|Q9XZJ3|CUL2_DICDI Cullin-2 OS=Dictyostelium discoideum GN=culB PE=2 SV=1
Length = 771
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 47/89 (52%), Positives = 62/89 (69%)
Query: 1 MKTELKLEQETTHKHIEEDRKLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVH 60
++ E L+ E T+K I+EDRKL +QA+IVRIMK RKT+ H L+ EV+ LRF+P +
Sbjct: 683 LQKETPLQNEETYKGIDEDRKLYLQASIVRIMKARKTMNHVSLIQEVIEHSRLRFQPNIP 742
Query: 61 VIKKCIDILIEKEYLERTETHKDMYHYLA 89
+IKKCI+ LIEKEY+ R E D Y Y A
Sbjct: 743 MIKKCIEQLIEKEYITRAEGESDRYLYAA 771
>sp|Q5RCF3|CUL2_PONAB Cullin-2 OS=Pongo abelii GN=CUL2 PE=2 SV=1
Length = 745
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 63/89 (70%)
Query: 1 MKTELKLEQETTHKHIEEDRKLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVH 60
M+ + E E T ++EDRK+ +QAAIVRIMK RK L+H L+ EV++Q RF P +
Sbjct: 657 MQKDTPQEMEQTRSAVDEDRKMYLQAAIVRIMKARKVLRHNALIQEVISQSRARFNPSIS 716
Query: 61 VIKKCIDILIEKEYLERTETHKDMYHYLA 89
+IKKCI++LI+K+Y+ER++ D Y Y+A
Sbjct: 717 MIKKCIEVLIDKQYIERSQASADEYSYVA 745
>sp|Q13617|CUL2_HUMAN Cullin-2 OS=Homo sapiens GN=CUL2 PE=1 SV=2
Length = 745
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 63/89 (70%)
Query: 1 MKTELKLEQETTHKHIEEDRKLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVH 60
M+ + E E T ++EDRK+ +QAAIVRIMK RK L+H L+ EV++Q RF P +
Sbjct: 657 MQKDTPQEMEQTRSAVDEDRKMYLQAAIVRIMKARKVLRHNALIQEVISQSRARFNPSIS 716
Query: 61 VIKKCIDILIEKEYLERTETHKDMYHYLA 89
+IKKCI++LI+K+Y+ER++ D Y Y+A
Sbjct: 717 MIKKCIEVLIDKQYIERSQASADEYSYVA 745
>sp|Q9D4H8|CUL2_MOUSE Cullin-2 OS=Mus musculus GN=Cul2 PE=1 SV=2
Length = 745
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 63/89 (70%)
Query: 1 MKTELKLEQETTHKHIEEDRKLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVH 60
M+ + E E T ++EDRK+ +QAAIVRIMK RK L+H L+ EV++Q RF P +
Sbjct: 657 MQKDTPQELEQTRSAVDEDRKMYLQAAIVRIMKARKVLRHNALIQEVISQSRARFNPSIS 716
Query: 61 VIKKCIDILIEKEYLERTETHKDMYHYLA 89
+IKKCI++LI+K+Y+ER++ D Y Y+A
Sbjct: 717 MIKKCIEVLIDKQYIERSQASADEYSYVA 745
>sp|Q54NZ5|CUL3_DICDI Cullin-3 OS=Dictyostelium discoideum GN=culC PE=3 SV=1
Length = 769
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 63/86 (73%)
Query: 4 ELKLEQETTHKHIEEDRKLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIK 63
E +E++ T ++EDRK I+A+IVRIMK RKTL+H LV+EV+ Q+ RF P ++K
Sbjct: 684 ETPVEEKETRDKVDEDRKHQIEASIVRIMKARKTLEHSNLVSEVIKQLQSRFVPNPVIVK 743
Query: 64 KCIDILIEKEYLERTETHKDMYHYLA 89
K I+ LIE+EYLER++ + +Y+Y+A
Sbjct: 744 KRIESLIEREYLERSKQDRKIYNYMA 769
>sp|Q21346|CUL6_CAEEL Cullin-6 OS=Caenorhabditis elegans GN=cul-6 PE=1 SV=1
Length = 729
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 55/82 (67%)
Query: 8 EQETTHKHIEEDRKLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCID 67
E + +E DRK I+A IVRIMK RK+L H L+ E+++Q+ RF P V +IK CI+
Sbjct: 648 ETDAVQNTVESDRKYEIKACIVRIMKTRKSLTHTLLINEIISQLKSRFTPNVQMIKICIE 707
Query: 68 ILIEKEYLERTETHKDMYHYLA 89
ILIE+ Y+ R+E ++Y YLA
Sbjct: 708 ILIEQLYIRRSENEHNVYEYLA 729
>sp|Q17390|CUL2_CAEEL Cullin-2 OS=Caenorhabditis elegans GN=cul-2 PE=1 SV=3
Length = 850
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Query: 8 EQETTHKHIEEDRKLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCID 67
EQE + +DRK ++ AIVRIMK RK L+H LV E+++Q RF P V IKK I+
Sbjct: 770 EQEAVANTVSQDRKYYMECAIVRIMKTRKVLKHNALVTEIMDQTKGRFSPDVPFIKKSIE 829
Query: 68 ILIEKEYLERTETHKDMYHYLA 89
LIEK Y++RT+ D Y YLA
Sbjct: 830 DLIEKMYIQRTD-QNDEYQYLA 850
>sp|B5DF89|CUL3_RAT Cullin-3 OS=Rattus norvegicus GN=Cul3 PE=1 SV=2
Length = 768
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/88 (50%), Positives = 59/88 (67%)
Query: 2 KTELKLEQETTHKHIEEDRKLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHV 61
+ E E++ T + +++DRK I+AAIVRIMK RK +QH LVAEV Q+ RF P V
Sbjct: 681 QGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVV 740
Query: 62 IKKCIDILIEKEYLERTETHKDMYHYLA 89
IKK I+ LIE+EYL RT + +Y Y+A
Sbjct: 741 IKKRIEGLIEREYLARTPEDRKVYTYVA 768
>sp|Q13618|CUL3_HUMAN Cullin-3 OS=Homo sapiens GN=CUL3 PE=1 SV=2
Length = 768
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/88 (50%), Positives = 59/88 (67%)
Query: 2 KTELKLEQETTHKHIEEDRKLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHV 61
+ E E++ T + +++DRK I+AAIVRIMK RK +QH LVAEV Q+ RF P V
Sbjct: 681 QGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVV 740
Query: 62 IKKCIDILIEKEYLERTETHKDMYHYLA 89
IKK I+ LIE+EYL RT + +Y Y+A
Sbjct: 741 IKKRIEGLIEREYLARTPEDRKVYTYVA 768
>sp|A4IHP4|CUL3_XENTR Cullin-3 OS=Xenopus tropicalis GN=cul3 PE=2 SV=1
Length = 768
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/88 (50%), Positives = 59/88 (67%)
Query: 2 KTELKLEQETTHKHIEEDRKLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHV 61
+ E E++ T + +++DRK I+AAIVRIMK RK +QH LVAEV Q+ RF P V
Sbjct: 681 QGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVV 740
Query: 62 IKKCIDILIEKEYLERTETHKDMYHYLA 89
IKK I+ LIE+EYL RT + +Y Y+A
Sbjct: 741 IKKRIEGLIEREYLARTPEDRKVYTYVA 768
>sp|Q6GPF3|CUL3B_XENLA Cullin-3-B OS=Xenopus laevis GN=cul3b PE=1 SV=1
Length = 768
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/88 (50%), Positives = 59/88 (67%)
Query: 2 KTELKLEQETTHKHIEEDRKLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHV 61
+ E E++ T + +++DRK I+AAIVRIMK RK +QH LVAEV Q+ RF P V
Sbjct: 681 QGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVV 740
Query: 62 IKKCIDILIEKEYLERTETHKDMYHYLA 89
IKK I+ LIE+EYL RT + +Y Y+A
Sbjct: 741 IKKRIEGLIEREYLARTPEDRKVYTYVA 768
>sp|Q6DE95|CUL3A_XENLA Cullin-3-A OS=Xenopus laevis GN=cul3a PE=1 SV=1
Length = 768
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/88 (50%), Positives = 59/88 (67%)
Query: 2 KTELKLEQETTHKHIEEDRKLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHV 61
+ E E++ T + +++DRK I+AAIVRIMK RK +QH LVAEV Q+ RF P V
Sbjct: 681 QGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVV 740
Query: 62 IKKCIDILIEKEYLERTETHKDMYHYLA 89
IKK I+ LIE+EYL RT + +Y Y+A
Sbjct: 741 IKKRIEGLIEREYLARTPEDRKVYTYVA 768
>sp|Q9JLV5|CUL3_MOUSE Cullin-3 OS=Mus musculus GN=Cul3 PE=1 SV=1
Length = 768
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 44/88 (50%), Positives = 59/88 (67%)
Query: 2 KTELKLEQETTHKHIEEDRKLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHV 61
+ E E++ T + +++DRK I+AAIVRIMK RK +QH LVAEV Q+ RF P V
Sbjct: 681 QGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVV 740
Query: 62 IKKCIDILIEKEYLERTETHKDMYHYLA 89
IKK I+ LIE+EYL RT + +Y Y+A
Sbjct: 741 IKKRIEGLIEREYLARTPEDRKVYTYVA 768
>sp|Q94AH6|CUL1_ARATH Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1
Length = 738
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 54/74 (72%)
Query: 16 IEEDRKLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYL 75
+++DR+ I AAIVRIMK RK L HQQLV+E + Q+S FKP + IKK ++ LI ++YL
Sbjct: 665 VDKDRRYAIDAAIVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYL 724
Query: 76 ERTETHKDMYHYLA 89
ER + + +M+ YLA
Sbjct: 725 ERDKENPNMFRYLA 738
>sp|Q9ZVH4|CUL3A_ARATH Cullin-3A OS=Arabidopsis thaliana GN=CUL3A PE=1 SV=1
Length = 732
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 57/86 (66%)
Query: 4 ELKLEQETTHKHIEEDRKLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIK 63
E + E++ T + +EEDRK I+AAIVRIMK RK L H ++AEV Q+ RF IK
Sbjct: 647 ETEPEKQETRQRVEEDRKPQIEAAIVRIMKSRKILDHNNIIAEVTKQLQPRFLANPTEIK 706
Query: 64 KCIDILIEKEYLERTETHKDMYHYLA 89
K I+ LIE+++LER T + +Y YLA
Sbjct: 707 KRIESLIERDFLERDSTDRKLYRYLA 732
>sp|Q17391|CUL3_CAEEL Cullin-3 OS=Caenorhabditis elegans GN=cul-3 PE=1 SV=2
Length = 777
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/88 (50%), Positives = 56/88 (63%)
Query: 2 KTELKLEQETTHKHIEEDRKLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHV 61
K E + E T + +E+DRKL ++AAIVRIMK RK L H LVAEV Q+ RF P +
Sbjct: 690 KVESEPEIRETRQKVEDDRKLEVEAAIVRIMKARKKLNHNNLVAEVTQQLRHRFMPSPII 749
Query: 62 IKKCIDILIEKEYLERTETHKDMYHYLA 89
IK+ I+ LIE+EYL R E Y Y+A
Sbjct: 750 IKQRIETLIEREYLARDEHDHRAYQYIA 777
>sp|Q9C9L0|CUL3B_ARATH Cullin-3B OS=Arabidopsis thaliana GN=CUL3B PE=1 SV=1
Length = 732
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 57/86 (66%)
Query: 4 ELKLEQETTHKHIEEDRKLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIK 63
E + E++ T + +EEDRK I+AAIVRIMK R+ L H ++AEV Q+ RF IK
Sbjct: 647 ETEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQTRFLANPTEIK 706
Query: 64 KCIDILIEKEYLERTETHKDMYHYLA 89
K I+ LIE+++LER T + +Y YLA
Sbjct: 707 KRIESLIERDFLERDNTDRKLYRYLA 732
>sp|Q13620|CUL4B_HUMAN Cullin-4B OS=Homo sapiens GN=CUL4B PE=1 SV=4
Length = 913
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 57/82 (69%), Gaps = 2/82 (2%)
Query: 8 EQETTHKHIEEDRKLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCID 67
EQ +T + + +DR+ I AAIVRIMKMRKTL H LV+EV NQ+ KP +KK I+
Sbjct: 834 EQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLKFPVKP--ADLKKRIE 891
Query: 68 ILIEKEYLERTETHKDMYHYLA 89
LI+++Y+ER + + + Y+Y+A
Sbjct: 892 SLIDRDYMERDKENPNQYNYIA 913
>sp|A2A432|CUL4B_MOUSE Cullin-4B OS=Mus musculus GN=Cul4b PE=1 SV=1
Length = 970
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 57/82 (69%), Gaps = 2/82 (2%)
Query: 8 EQETTHKHIEEDRKLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCID 67
EQ +T + + +DR+ I AAIVRIMKMRKTL H LV+EV NQ+ KP +KK I+
Sbjct: 891 EQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLKFPVKP--ADLKKRIE 948
Query: 68 ILIEKEYLERTETHKDMYHYLA 89
LI+++Y+ER + + + Y+Y+A
Sbjct: 949 SLIDRDYMERDKENPNQYNYIA 970
>sp|Q13619|CUL4A_HUMAN Cullin-4A OS=Homo sapiens GN=CUL4A PE=1 SV=3
Length = 759
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 57/82 (69%), Gaps = 2/82 (2%)
Query: 8 EQETTHKHIEEDRKLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCID 67
EQ +T + + +DR+ I AAIVRIMKMRKTL H LV+E+ NQ+ KP +KK I+
Sbjct: 680 EQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQLKFPVKP--GDLKKRIE 737
Query: 68 ILIEKEYLERTETHKDMYHYLA 89
LI+++Y+ER + + + YHY+A
Sbjct: 738 SLIDRDYMERDKDNPNQYHYVA 759
>sp|Q9SRZ0|CUL2_ARATH Cullin-2 OS=Arabidopsis thaliana GN=CUL2 PE=1 SV=1
Length = 742
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 52/74 (70%)
Query: 16 IEEDRKLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYL 75
+++DR+ I AA+VRIMK RK L HQQLV+E + +S FKP + +IKK I+ LI ++YL
Sbjct: 669 VDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEHLSKMFKPDIKMIKKRIEDLISRDYL 728
Query: 76 ERTETHKDMYHYLA 89
ER + + + YLA
Sbjct: 729 ERDTDNPNTFKYLA 742
>sp|Q3TCH7|CUL4A_MOUSE Cullin-4A OS=Mus musculus GN=Cul4a PE=1 SV=1
Length = 759
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 56/82 (68%), Gaps = 2/82 (2%)
Query: 8 EQETTHKHIEEDRKLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCID 67
EQ +T + + +DR+ I AAIVRIMKMRKTL H LV+E+ NQ+ KP +KK I+
Sbjct: 680 EQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQLKFPVKP--GDLKKRIE 737
Query: 68 ILIEKEYLERTETHKDMYHYLA 89
LI+++Y+ER + + YHY+A
Sbjct: 738 SLIDRDYMERDKDSPNQYHYVA 759
>sp|P0CH31|CLL1_ARATH Putative cullin-like protein 1 OS=Arabidopsis thaliana GN=At1g43140
PE=3 SV=1
Length = 721
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 52/74 (70%)
Query: 16 IEEDRKLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYL 75
+++DR+ I AA+VRIMK RK L HQQLV+E + +S FKP + +IKK I+ LI ++YL
Sbjct: 648 VDKDRRYAIDAALVRIMKSRKVLAHQQLVSECVEHLSKMFKPDIKMIKKRIEDLINRDYL 707
Query: 76 ERTETHKDMYHYLA 89
ER + + + Y+A
Sbjct: 708 ERDTENANTFKYVA 721
>sp|Q54CS2|CUL4_DICDI Cullin-4 OS=Dictyostelium discoideum GN=culD PE=3 SV=1
Length = 802
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 58/82 (70%), Gaps = 2/82 (2%)
Query: 8 EQETTHKHIEEDRKLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCID 67
E + T+++I DR+ + AAIVRIMK RKTL H L++E+++ L+F+P+ +KK I+
Sbjct: 723 ENQKTNENIISDRQYQVDAAIVRIMKTRKTLAHNLLISELVSL--LKFQPKPVDLKKRIE 780
Query: 68 ILIEKEYLERTETHKDMYHYLA 89
ILIEKEYL R + +Y+Y+A
Sbjct: 781 ILIEKEYLCRDPENAMIYNYMA 802
>sp|Q09760|CUL3_SCHPO Cullin-3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cul3 PE=1 SV=2
Length = 785
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 54/82 (65%)
Query: 8 EQETTHKHIEEDRKLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCID 67
E++ T + ++E RK A IVR+MK RK +H QL+AEV Q++ RF P +IK+ I+
Sbjct: 704 ERKRTLEKVDESRKHQADACIVRVMKDRKVCEHNQLMAEVTRQLNPRFHPSPMMIKRRIE 763
Query: 68 ILIEKEYLERTETHKDMYHYLA 89
LIE+EYL+R + +Y YLA
Sbjct: 764 ALIEREYLQRQADNGRIYEYLA 785
>sp|Q54XF7|CUL5_DICDI Cullin-5 OS=Dictyostelium discoideum GN=culE PE=3 SV=1
Length = 750
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
Query: 8 EQETTHKHIEEDRKLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCID 67
+Q + + IE++R +QAAIVRIMK +KT+ H L E Q+S F P++ IKK I+
Sbjct: 666 QQTVSEQEIEKERFFKLQAAIVRIMKSKKTMTHNDLTVETTTQVSKWFTPKITAIKKAIE 725
Query: 68 ILIEKEYLERTETHKDM---YHYLA 89
LI++EY+ RT Y Y+A
Sbjct: 726 YLIDQEYIRRTTDDNPSARKYEYMA 750
>sp|Q8LGH4|CUL4_ARATH Cullin-4 OS=Arabidopsis thaliana GN=CUL4 PE=1 SV=1
Length = 792
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 53/82 (64%), Gaps = 2/82 (2%)
Query: 8 EQETTHKHIEEDRKLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCID 67
E +T + + +DR+ I AAIVRIMK RK L H L+ E+ Q+ KP +KK I+
Sbjct: 713 ENTSTTERVFQDRQYQIDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKP--ADLKKRIE 770
Query: 68 ILIEKEYLERTETHKDMYHYLA 89
LI++EYLER +++ +Y+YLA
Sbjct: 771 SLIDREYLEREKSNPQIYNYLA 792
>sp|Q12018|CDC53_YEAST Cell division control protein 53 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CDC53 PE=1 SV=1
Length = 815
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 8 EQETTHKHIEEDRKLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCID 67
E E K + +R++ ++A IVRIMK ++ L H LV E + Q RF +V ++K+ ID
Sbjct: 735 EDERIEKELNTERQIFLEACIVRIMKAKRNLPHTTLVNECIAQSHQRFNAKVSMVKRAID 794
Query: 68 ILIEKEYLERTETHKDMYHYLA 89
LI+K YL+R + + Y YLA
Sbjct: 795 SLIQKGYLQRGD-DGESYAYLA 815
>sp|Q17392|CUL4_CAEEL Cullin-4 OS=Caenorhabditis elegans GN=cul-4 PE=1 SV=3
Length = 840
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 17 EEDRKLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLE 76
DR+ I AA+VRIMK RK L HQ L+ E+L Q LRF IKK ++ LIE+EY+
Sbjct: 770 NSDRQYKIDAAVVRIMKARKQLNHQTLMTELLQQ--LRFPVSTADIKKRLESLIEREYIS 827
Query: 77 RTETHKDMYHYLA 89
R Y+Y+A
Sbjct: 828 RDPEEASSYNYVA 840
>sp|O14122|CUL4_SCHPO Cullin-4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cul4 PE=1 SV=1
Length = 734
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Query: 8 EQETTHKHIEEDRKLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCID 67
E + + DR+ +QA+IVR+MK ++ ++H LV V+N + R P V +K I+
Sbjct: 655 ENSDVQEQVVRDRQFELQASIVRVMKQKEKMKHDDLVQYVINNVKDRGIPLVSDVKTAIE 714
Query: 68 ILIEKEYLERTETHKDMYHYL 88
L+EKEYLER + D+Y Y+
Sbjct: 715 KLLEKEYLEREDN--DIYTYV 733
>sp|P53202|CUL3_YEAST Cullin-3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=CUL3 PE=1 SV=1
Length = 744
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%)
Query: 24 IQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTETHKD 83
+ A IVRIMK L HQQL+ + R ++K+ I +LIEKEY++R
Sbjct: 679 LSAIIVRIMKTEGKLSHQQLLERTTKRTQSRLSLTPSILKRSIQLLIEKEYIQRNADDPS 738
Query: 84 MYHYLA 89
YHYL+
Sbjct: 739 YYHYLS 744
>sp|Q23639|CUL5_CAEEL Cullin-5 OS=Caenorhabditis elegans GN=cul-5 PE=1 SV=2
Length = 765
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%)
Query: 1 MKTELKLEQETTHKHIEEDRKLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVH 60
++ L+ E H+ I R+L +Q IV+I+K RKT QL E++ + F P
Sbjct: 677 LQLSLEANAEKEHESIVALRELRVQEGIVKILKTRKTYTLAQLTMELVEILKPLFIPNRK 736
Query: 61 VIKKCIDILIEKEYLERTETHKDMYHYLA 89
+IK+ ID LIE +Y+ER + + Y++
Sbjct: 737 IIKEQIDWLIENKYMERRADDINTFVYIS 765
>sp|Q5RB36|CUL5_PONAB Cullin-5 OS=Pongo abelii GN=CUL5 PE=2 SV=3
Length = 780
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 50/81 (61%)
Query: 9 QETTHKHIEEDRKLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDI 68
+E ++ I + R L Q AI++IMKMRK + + QL E++ + F P+ +IK+ I+
Sbjct: 700 REEENEGIVQLRILRTQEAIIQIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKEQIEW 759
Query: 69 LIEKEYLERTETHKDMYHYLA 89
LIE +Y+ R E+ + + Y+A
Sbjct: 760 LIEHKYIRRDESDINTFIYMA 780
>sp|Q93034|CUL5_HUMAN Cullin-5 OS=Homo sapiens GN=CUL5 PE=1 SV=4
Length = 780
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 50/81 (61%)
Query: 9 QETTHKHIEEDRKLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDI 68
+E ++ I + R L Q AI++IMKMRK + + QL E++ + F P+ +IK+ I+
Sbjct: 700 REEENEGIVQLRILRTQEAIIQIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKEQIEW 759
Query: 69 LIEKEYLERTETHKDMYHYLA 89
LIE +Y+ R E+ + + Y+A
Sbjct: 760 LIEHKYIRRDESDINTFIYMA 780
>sp|Q9JJ31|CUL5_RAT Cullin-5 OS=Rattus norvegicus GN=Cul5 PE=1 SV=3
Length = 780
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 49/81 (60%)
Query: 9 QETTHKHIEEDRKLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDI 68
+E ++ I + R L Q AI++IMKMRK + + QL E++ + F P+ +IK+ I+
Sbjct: 700 REEENEGIVQLRILRTQEAIIQIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKEQIEW 759
Query: 69 LIEKEYLERTETHKDMYHYLA 89
LIE +Y+ R E + + Y+A
Sbjct: 760 LIEHKYIRRDEADINTFIYMA 780
>sp|Q29425|CUL5_RABIT Cullin-5 OS=Oryctolagus cuniculus GN=CUL5 PE=2 SV=3
Length = 780
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 7/88 (7%)
Query: 9 QETTHKHIEEDRKLLIQAAIVR-------IMKMRKTLQHQQLVAEVLNQISLRFKPRVHV 61
Q TT + EE+ + ++Q I+R IMKMRK + + QL E++ + F P+ +
Sbjct: 693 QLTTERMREEENEGIVQLRILRTRKLYIQIMKMRKKISNAQLQTELVEILKNMFLPQKKM 752
Query: 62 IKKCIDILIEKEYLERTETHKDMYHYLA 89
IK+ I+ LIE +Y+ R E+ + + Y+A
Sbjct: 753 IKEQIEWLIEHKYIRRDESDINTFIYMA 780
>sp|Q9D5V5|CUL5_MOUSE Cullin-5 OS=Mus musculus GN=Cul5 PE=1 SV=3
Length = 780
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 48/81 (59%)
Query: 9 QETTHKHIEEDRKLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDI 68
+E ++ I + R L Q AI++IMKMRK + + QL E++ + F P+ +IK+ ++
Sbjct: 700 REEENEGIVQLRILRTQEAIIQIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKEQMEW 759
Query: 69 LIEKEYLERTETHKDMYHYLA 89
LIE Y+ R E + + Y+A
Sbjct: 760 LIEHRYIRRDEADINTFIYMA 780
>sp|Q9XVN3|IASPP_CAEEL Apoptotic enhancer 1 protein OS=Caenorhabditis elegans GN=ape-1
PE=1 SV=1
Length = 769
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 7 LEQETTHKHIEEDRKLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLR--FKPRVHV 61
+ ++ +KH+EE + AA +++ RK QHQ L+A NQ+S + +PR V
Sbjct: 210 MRAQSLNKHLEEMYRRRQTAAAAALVEQRKMQQHQILLARAANQVSTQEVIRPRASV 266
>sp|Q91687|ITA4_XENLA Integrin alpha-4 OS=Xenopus laevis GN=itga4 PE=2 SV=1
Length = 1032
Score = 29.6 bits (65), Expect = 5.8, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 14/70 (20%)
Query: 2 KTELKLEQETTHKHIEEDRKLLIQAAIV---------RIMKMRKTLQHQQLVAEVLNQIS 52
K ++++ E +H H+E D +LIQ +I+ + + H +V E L+ +
Sbjct: 911 KATVEVQLEISHSHLERDEAMLIQFFTTAQAGFEDSFKIINLNQD-HHAYVVLEALHNL- 968
Query: 53 LRFKPRVHVI 62
KP+ HVI
Sbjct: 969 ---KPKKHVI 975
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.135 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,931,606
Number of Sequences: 539616
Number of extensions: 812369
Number of successful extensions: 2835
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2781
Number of HSP's gapped (non-prelim): 54
length of query: 89
length of database: 191,569,459
effective HSP length: 59
effective length of query: 30
effective length of database: 159,732,115
effective search space: 4791963450
effective search space used: 4791963450
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)