Query psy4179
Match_columns 89
No_of_seqs 117 out of 574
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 18:51:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4179.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4179hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o2p_E Cell division control p 100.0 3.5E-38 1.2E-42 199.1 8.2 82 7-89 7-88 (88)
2 1iuy_A Cullin-3 homologue; win 100.0 5.4E-40 1.8E-44 208.9 -1.2 89 1-89 4-92 (92)
3 3tdu_C Cullin-1, CUL-1; E2:E3, 100.0 1.3E-37 4.3E-42 192.4 5.8 76 14-89 2-77 (77)
4 2do7_A Cullin-4B, CUL-4B; heli 100.0 2.2E-37 7.4E-42 199.8 3.4 85 3-89 11-95 (101)
5 3dpl_C Cullin-5; ubiquitin, NE 100.0 6.8E-33 2.3E-37 210.3 8.9 87 3-89 296-382 (382)
6 1ldj_A Cullin homolog 1, CUL-1 100.0 7E-30 2.4E-34 206.8 9.7 88 2-89 673-760 (760)
7 2hye_C Cullin-4A, CUL-4A; beta 99.9 3.4E-28 1.2E-32 196.9 9.2 85 3-89 675-759 (759)
8 1p6r_A Penicillinase repressor 94.8 0.056 1.9E-06 31.4 4.7 59 25-88 11-69 (82)
9 1xn7_A Hypothetical protein YH 94.5 0.06 2.1E-06 32.1 4.3 44 27-78 6-49 (78)
10 2k4b_A Transcriptional regulat 94.2 0.036 1.2E-06 34.4 3.0 58 27-89 39-96 (99)
11 2fu4_A Ferric uptake regulatio 94.1 0.16 5.6E-06 29.3 5.6 60 25-87 19-80 (83)
12 2k02_A Ferrous iron transport 93.4 0.077 2.6E-06 32.5 3.4 44 27-78 6-49 (87)
13 2v79_A DNA replication protein 92.8 0.14 4.8E-06 33.3 4.1 29 49-77 55-83 (135)
14 1sd4_A Penicillinase repressor 92.6 0.13 4.5E-06 31.6 3.6 59 25-88 12-70 (126)
15 3f8b_A Transcriptional regulat 92.1 0.9 3.1E-05 28.3 7.2 59 19-78 8-66 (116)
16 1okr_A MECI, methicillin resis 91.8 0.26 9E-06 30.0 4.4 58 26-88 13-70 (123)
17 1tbx_A ORF F-93, hypothetical 91.6 0.44 1.5E-05 28.1 5.1 57 26-86 11-67 (99)
18 1wi9_A Protein C20ORF116 homol 91.6 0.36 1.2E-05 28.7 4.5 55 27-89 11-65 (72)
19 2g9w_A Conserved hypothetical 90.0 0.35 1.2E-05 30.6 3.8 58 25-87 11-69 (138)
20 2jt1_A PEFI protein; solution 89.4 0.6 2E-05 27.6 4.2 54 20-81 5-60 (77)
21 2vn2_A DNAD, chromosome replic 89.3 0.25 8.6E-06 31.3 2.7 29 50-78 56-84 (128)
22 3r0a_A Putative transcriptiona 89.1 0.59 2E-05 29.2 4.3 47 24-78 27-75 (123)
23 3cuo_A Uncharacterized HTH-typ 88.9 0.85 2.9E-05 26.4 4.7 54 24-85 25-78 (99)
24 1sfx_A Conserved hypothetical 88.1 0.86 2.9E-05 26.5 4.4 48 24-79 21-68 (109)
25 1xma_A Predicted transcription 87.0 1.7 5.7E-05 28.2 5.6 55 23-78 41-95 (145)
26 2qww_A Transcriptional regulat 85.8 1.7 5.8E-05 27.0 5.1 44 26-77 44-87 (154)
27 2htj_A P fimbrial regulatory p 85.2 1.7 5.8E-05 24.9 4.5 44 27-78 4-47 (81)
28 3kp7_A Transcriptional regulat 84.9 0.68 2.3E-05 28.9 2.8 50 25-83 40-93 (151)
29 1qgp_A Protein (double strande 84.5 2.1 7.1E-05 24.9 4.6 51 25-83 16-69 (77)
30 2frh_A SARA, staphylococcal ac 84.1 0.6 2E-05 28.9 2.2 26 53-78 61-86 (127)
31 3i4p_A Transcriptional regulat 84.0 2.6 8.9E-05 27.2 5.4 47 24-78 4-50 (162)
32 3eyy_A Putative iron uptake re 82.9 1.5 5.3E-05 28.1 3.9 52 26-80 22-73 (145)
33 1i1g_A Transcriptional regulat 82.7 1.9 6.6E-05 26.7 4.3 47 24-78 5-51 (141)
34 2oqg_A Possible transcriptiona 82.1 2.7 9.1E-05 25.0 4.6 49 25-82 23-71 (114)
35 2eth_A Transcriptional regulat 81.9 3.6 0.00012 25.6 5.4 47 25-79 46-92 (154)
36 2nyx_A Probable transcriptiona 81.6 3 0.0001 26.5 5.0 24 55-78 69-92 (168)
37 1qbj_A Protein (double-strande 81.5 3.6 0.00012 24.3 4.9 52 24-83 11-65 (81)
38 1ub9_A Hypothetical protein PH 81.2 2.3 7.7E-05 24.5 3.9 47 25-79 18-64 (100)
39 1lj9_A Transcriptional regulat 81.0 4 0.00014 24.8 5.3 25 55-79 53-77 (144)
40 3tgn_A ADC operon repressor AD 81.0 3.5 0.00012 25.1 5.0 46 25-79 40-85 (146)
41 3bpv_A Transcriptional regulat 80.8 2.6 8.9E-05 25.4 4.3 47 25-79 31-77 (138)
42 3k0l_A Repressor protein; heli 80.1 3 0.0001 26.3 4.5 46 26-79 49-94 (162)
43 3oop_A LIN2960 protein; protei 79.9 3.7 0.00013 25.1 4.8 27 53-79 59-85 (143)
44 2dk5_A DNA-directed RNA polyme 79.8 1.5 5.2E-05 26.5 2.9 27 51-77 42-68 (91)
45 3mwm_A ZUR, putative metal upt 79.4 8.6 0.00029 24.3 6.6 53 25-80 16-69 (139)
46 2dbb_A Putative HTH-type trans 79.4 3.9 0.00013 25.7 4.9 47 24-78 10-56 (151)
47 2fbh_A Transcriptional regulat 79.3 4.2 0.00014 24.6 4.9 25 55-79 62-86 (146)
48 4hbl_A Transcriptional regulat 79.2 3 0.0001 25.9 4.3 26 54-79 64-89 (149)
49 2p5k_A Arginine repressor; DNA 79.2 5.5 0.00019 21.2 5.0 53 28-87 10-62 (64)
50 3cjn_A Transcriptional regulat 78.9 4.6 0.00016 25.2 5.1 25 55-79 76-100 (162)
51 1mzb_A Ferric uptake regulatio 78.7 6.1 0.00021 24.8 5.6 53 25-80 20-74 (136)
52 1jgs_A Multiple antibiotic res 78.5 6.2 0.00021 23.7 5.5 24 55-78 58-81 (138)
53 3g3z_A NMB1585, transcriptiona 78.2 3.2 0.00011 25.4 4.2 47 25-79 33-79 (145)
54 3bja_A Transcriptional regulat 78.2 1.2 4E-05 27.1 2.0 25 54-78 56-80 (139)
55 1ku9_A Hypothetical protein MJ 78.1 1.2 4E-05 27.3 2.0 36 35-78 39-74 (152)
56 2rdp_A Putative transcriptiona 77.8 5.5 0.00019 24.3 5.2 27 53-79 64-90 (150)
57 2pex_A Transcriptional regulat 77.1 3.3 0.00011 25.6 4.0 26 54-79 70-95 (153)
58 1z91_A Organic hydroperoxide r 77.0 2.4 8.2E-05 25.9 3.3 30 50-79 59-88 (147)
59 2pn6_A ST1022, 150AA long hypo 76.9 4.4 0.00015 25.4 4.6 47 24-78 4-50 (150)
60 2xig_A Ferric uptake regulatio 76.8 5.3 0.00018 25.7 5.0 54 24-80 28-82 (150)
61 2fa5_A Transcriptional regulat 76.7 4.3 0.00015 25.2 4.5 46 26-79 52-97 (162)
62 2cfx_A HTH-type transcriptiona 76.6 3.7 0.00013 25.8 4.2 46 25-78 7-52 (144)
63 3cdh_A Transcriptional regulat 76.5 5.9 0.0002 24.5 5.1 47 25-79 45-91 (155)
64 2pg4_A Uncharacterized protein 76.5 0.51 1.8E-05 27.8 -0.0 39 37-83 30-69 (95)
65 2p5v_A Transcriptional regulat 76.3 3.6 0.00012 26.4 4.1 46 25-78 12-57 (162)
66 3hsr_A HTH-type transcriptiona 76.2 0.93 3.2E-05 28.0 1.2 47 25-79 38-84 (140)
67 2fe3_A Peroxide operon regulat 76.0 4.8 0.00016 25.6 4.6 54 25-81 24-78 (145)
68 2hzt_A Putative HTH-type trans 75.9 2.1 7.3E-05 25.7 2.7 44 28-79 19-62 (107)
69 2qvo_A Uncharacterized protein 75.7 1.3 4.5E-05 26.0 1.7 28 54-82 39-66 (95)
70 2cg4_A Regulatory protein ASNC 75.2 4.4 0.00015 25.6 4.2 46 24-77 9-54 (152)
71 3bdd_A Regulatory protein MARR 75.2 7.3 0.00025 23.4 5.2 47 25-79 33-79 (142)
72 2gxg_A 146AA long hypothetical 75.1 2.7 9.2E-05 25.6 3.1 26 54-79 59-84 (146)
73 2w57_A Ferric uptake regulatio 74.9 5.3 0.00018 25.7 4.6 52 25-79 19-72 (150)
74 2nnn_A Probable transcriptiona 74.8 1.4 4.7E-05 26.7 1.7 29 51-79 58-86 (140)
75 3k2z_A LEXA repressor; winged 74.6 6.2 0.00021 26.1 5.1 56 19-82 5-61 (196)
76 1yg2_A Gene activator APHA; vi 74.4 4.7 0.00016 26.5 4.4 56 23-79 2-57 (179)
77 3eco_A MEPR; mutlidrug efflux 74.4 1.3 4.3E-05 27.1 1.4 25 55-79 57-81 (139)
78 3bro_A Transcriptional regulat 73.9 1.3 4.5E-05 26.9 1.4 25 55-79 60-84 (141)
79 1z7u_A Hypothetical protein EF 73.6 2.9 0.0001 25.3 3.0 51 28-87 27-80 (112)
80 2bv6_A MGRA, HTH-type transcri 73.6 1.7 5.9E-05 26.6 1.9 47 26-80 40-86 (142)
81 2cyy_A Putative HTH-type trans 73.6 5.6 0.00019 25.1 4.5 46 25-78 9-54 (151)
82 3l7w_A Putative uncharacterize 73.3 5.2 0.00018 24.2 4.1 55 20-79 6-60 (108)
83 2e1c_A Putative HTH-type trans 73.2 5 0.00017 26.3 4.3 47 24-78 28-74 (171)
84 4aik_A Transcriptional regulat 73.1 1.4 4.6E-05 28.1 1.4 29 51-79 52-80 (151)
85 2o03_A Probable zinc uptake re 72.9 12 0.00042 23.2 5.9 52 26-80 14-66 (131)
86 3ech_A MEXR, multidrug resista 72.5 4.3 0.00015 24.8 3.6 46 26-79 40-85 (142)
87 2w25_A Probable transcriptiona 72.4 5.2 0.00018 25.2 4.1 47 24-78 8-54 (150)
88 3e6m_A MARR family transcripti 72.4 2.1 7.2E-05 27.0 2.2 27 53-79 75-101 (161)
89 4esf_A PADR-like transcription 72.2 15 0.0005 22.7 6.6 57 19-78 7-63 (117)
90 3nrv_A Putative transcriptiona 71.9 7.2 0.00025 23.8 4.6 25 55-79 64-88 (148)
91 3jth_A Transcription activator 71.8 12 0.00041 21.6 6.8 52 25-85 25-76 (98)
92 3jw4_A Transcriptional regulat 71.8 1.6 5.3E-05 27.1 1.4 29 51-79 63-91 (148)
93 4ets_A Ferric uptake regulatio 71.7 8.9 0.00031 25.0 5.2 54 25-79 35-89 (162)
94 2fsw_A PG_0823 protein; alpha- 71.7 3.1 0.00011 24.9 2.7 43 28-79 30-73 (107)
95 1yyv_A Putative transcriptiona 71.5 7 0.00024 24.5 4.5 45 27-79 39-83 (131)
96 3deu_A Transcriptional regulat 70.6 2 6.7E-05 27.6 1.7 26 54-79 77-102 (166)
97 4b8x_A SCO5413, possible MARR- 70.5 1.6 5.5E-05 27.5 1.3 55 24-79 20-85 (147)
98 3s2w_A Transcriptional regulat 70.5 1.6 5.5E-05 27.4 1.3 26 54-79 73-98 (159)
99 2ia0_A Putative HTH-type trans 70.3 5.9 0.0002 25.9 4.1 47 24-78 18-64 (171)
100 3bj6_A Transcriptional regulat 70.2 7.8 0.00027 23.7 4.5 25 55-79 64-88 (152)
101 3iz6_V 40S ribosomal protein S 69.8 2.4 8.3E-05 26.9 2.0 49 40-88 48-103 (108)
102 2fbi_A Probable transcriptiona 69.8 1.9 6.6E-05 26.1 1.5 26 54-79 59-84 (142)
103 2a61_A Transcriptional regulat 69.7 6.2 0.00021 23.9 3.9 46 26-79 36-81 (145)
104 2hr3_A Probable transcriptiona 69.3 2.4 8.2E-05 26.0 1.9 26 54-79 59-84 (147)
105 2esh_A Conserved hypothetical 69.1 10 0.00034 23.2 4.8 56 21-79 11-69 (118)
106 1s3j_A YUSO protein; structura 69.0 6.2 0.00021 24.2 3.8 26 54-79 60-85 (155)
107 3f3x_A Transcriptional regulat 68.5 1.5 5.1E-05 27.0 0.8 27 53-79 58-84 (144)
108 1u2w_A CADC repressor, cadmium 68.4 8.3 0.00028 23.6 4.3 52 26-85 45-96 (122)
109 3boq_A Transcriptional regulat 68.2 4.5 0.00016 25.1 3.0 26 54-79 71-96 (160)
110 4esb_A Transcriptional regulat 67.3 12 0.00041 23.0 4.9 54 22-78 8-61 (115)
111 3fm5_A Transcriptional regulat 66.9 1.7 5.9E-05 26.9 0.8 24 56-79 65-88 (150)
112 2d1h_A ST1889, 109AA long hypo 66.4 2.8 9.6E-05 24.2 1.7 43 30-80 29-71 (109)
113 3nqo_A MARR-family transcripti 65.6 2.4 8.2E-05 27.8 1.4 27 53-79 65-91 (189)
114 4a5n_A Uncharacterized HTH-typ 65.5 18 0.0006 23.0 5.5 53 27-87 30-84 (131)
115 1y0u_A Arsenical resistance op 65.2 14 0.00048 21.3 4.7 45 25-79 33-77 (96)
116 2fxa_A Protease production reg 63.6 3.9 0.00013 27.4 2.2 30 50-79 67-96 (207)
117 3f8m_A GNTR-family protein tra 63.0 18 0.00062 24.9 5.6 48 24-81 23-71 (248)
118 1r1u_A CZRA, repressor protein 62.9 16 0.00053 21.6 4.7 51 24-83 27-77 (106)
119 2f2e_A PA1607; transcription f 62.8 3.8 0.00013 26.2 1.9 50 28-87 29-80 (146)
120 1q1h_A TFE, transcription fact 62.6 7.6 0.00026 23.0 3.2 28 51-78 39-66 (110)
121 3edp_A LIN2111 protein; APC883 62.5 4.2 0.00014 28.0 2.2 31 51-81 39-69 (236)
122 1hsj_A Fusion protein consisti 61.9 8.2 0.00028 28.4 3.8 41 48-88 423-466 (487)
123 2kko_A Possible transcriptiona 61.7 3.4 0.00012 24.9 1.5 51 26-85 28-78 (108)
124 3u2r_A Regulatory protein MARR 61.1 2.1 7E-05 27.2 0.4 26 54-79 71-96 (168)
125 3hhh_A Transcriptional regulat 60.2 19 0.00064 22.2 4.8 57 19-78 9-65 (116)
126 1p4x_A Staphylococcal accessor 59.6 5.2 0.00018 28.0 2.3 30 50-79 179-208 (250)
127 1r7j_A Conserved hypothetical 59.3 21 0.00071 21.2 4.7 24 56-79 31-54 (95)
128 3neu_A LIN1836 protein; struct 58.6 4.5 0.00016 25.2 1.7 28 53-80 45-72 (125)
129 1on2_A Transcriptional regulat 57.2 4 0.00014 25.2 1.2 44 28-79 13-56 (142)
130 2jsc_A Transcriptional regulat 56.8 14 0.00048 22.4 3.8 50 25-83 23-72 (118)
131 1oef_A Apolipoprotein E; glyco 56.4 9.5 0.00033 17.7 2.2 20 53-72 1-20 (26)
132 2x4h_A Hypothetical protein SS 56.0 4.1 0.00014 25.0 1.1 44 28-79 22-65 (139)
133 2b0l_A GTP-sensing transcripti 55.7 23 0.00079 21.3 4.6 48 24-79 29-77 (102)
134 3tqn_A Transcriptional regulat 55.6 4.5 0.00016 24.7 1.3 28 53-80 41-68 (113)
135 3bwg_A Uncharacterized HTH-typ 55.5 6.5 0.00022 26.9 2.2 28 53-80 37-64 (239)
136 3pqk_A Biofilm growth-associat 53.8 30 0.001 20.0 6.1 52 25-85 25-76 (102)
137 2oxl_A Hypothetical protein YM 52.9 30 0.001 19.7 5.4 51 21-71 7-58 (64)
138 3f6o_A Probable transcriptiona 52.8 13 0.00045 22.4 3.1 52 25-85 20-71 (118)
139 3by6_A Predicted transcription 52.5 6.5 0.00022 24.5 1.7 27 54-80 44-70 (126)
140 3eet_A Putative GNTR-family tr 52.0 5.5 0.00019 28.1 1.4 29 53-81 61-89 (272)
141 3ri2_A Transcriptional regulat 52.0 40 0.0014 20.9 7.5 58 16-78 14-71 (123)
142 1rbl_M Ribulose 1,5 bisphospha 51.9 9.7 0.00033 24.0 2.4 19 58-76 21-39 (109)
143 3u5c_Z RP45, S31, YS23, 40S ri 50.7 5.9 0.0002 25.1 1.2 40 49-88 63-102 (108)
144 1uly_A Hypothetical protein PH 50.6 25 0.00084 23.5 4.4 47 23-78 20-66 (192)
145 1oyi_A Double-stranded RNA-bin 50.6 37 0.0013 20.1 5.9 51 25-84 19-69 (82)
146 3df8_A Possible HXLR family tr 50.4 15 0.00052 22.1 3.1 48 27-84 31-81 (111)
147 3zxw_B Ribulose bisphosphate c 49.9 11 0.00037 24.2 2.4 18 58-75 20-37 (118)
148 3b73_A PHIH1 repressor-like pr 49.8 22 0.00076 22.0 3.8 46 25-78 15-62 (111)
149 3c18_A Nucleotidyltransferase- 49.8 24 0.00081 25.8 4.5 67 14-86 213-283 (290)
150 1wj5_A Hypothetical protein (r 48.7 13 0.00044 24.0 2.6 25 59-83 77-101 (120)
151 1p4x_A Staphylococcal accessor 48.6 9.9 0.00034 26.5 2.3 41 48-88 53-96 (250)
152 2wv0_A YVOA, HTH-type transcri 48.5 7.4 0.00025 26.8 1.6 28 54-81 43-70 (243)
153 1svd_M Ribulose bisphosphate c 47.7 11 0.00039 23.7 2.2 19 58-76 23-41 (110)
154 2ek5_A Predicted transcription 46.7 9.5 0.00032 23.9 1.8 30 51-80 34-63 (129)
155 3ic7_A Putative transcriptiona 46.0 8.5 0.00029 23.9 1.4 31 50-80 40-70 (126)
156 1fx7_A Iron-dependent represso 44.5 9.1 0.00031 25.9 1.5 27 54-80 33-59 (230)
157 4f6o_A Metacaspase-1; rossmann 44.4 18 0.0006 27.0 3.1 34 23-56 298-331 (350)
158 2rqp_A Heterochromatin protein 44.2 28 0.00094 20.6 3.5 53 24-78 16-70 (88)
159 3mhs_B Protein SUS1; multi-pro 44.2 49 0.0017 20.1 4.7 50 23-76 41-90 (96)
160 4ham_A LMO2241 protein; struct 44.1 11 0.00036 23.5 1.7 28 53-80 46-73 (134)
161 2h09_A Transcriptional regulat 43.8 55 0.0019 20.1 6.1 47 26-80 43-89 (155)
162 2xzm_8 RPS25E,; ribosome, tran 43.8 5.2 0.00018 26.6 0.2 39 50-88 68-106 (143)
163 2xub_A DNA-directed RNA polyme 43.5 76 0.0026 24.4 6.7 60 21-80 99-162 (534)
164 1stz_A Heat-inducible transcri 41.5 71 0.0024 23.2 6.0 57 19-81 17-74 (338)
165 2kep_A General secretion pathw 40.4 15 0.00052 22.8 1.9 32 53-88 31-77 (110)
166 2p4w_A Transcriptional regulat 40.2 56 0.0019 21.9 5.0 47 24-79 16-62 (202)
167 1i7d_A DNA topoisomerase III; 40.0 44 0.0015 26.8 5.0 51 25-78 493-544 (659)
168 1j5y_A Transcriptional regulat 39.9 64 0.0022 20.9 5.1 45 26-78 24-70 (187)
169 1bxn_I Rubisco, protein (ribul 39.2 21 0.00072 23.5 2.5 18 58-75 15-32 (139)
170 3b0c_W CENP-W, centromere prot 39.1 53 0.0018 18.7 5.3 20 53-72 54-73 (76)
171 2fbk_A Transcriptional regulat 38.9 5.8 0.0002 25.5 -0.2 26 54-79 95-120 (181)
172 2co5_A Viral protein F93; vira 38.9 50 0.0017 19.8 4.2 42 36-79 23-64 (99)
173 2e1n_A PEX, period extender; c 38.2 47 0.0016 21.1 4.1 52 25-78 36-87 (138)
174 3hrs_A Metalloregulator SCAR; 37.9 12 0.00041 25.2 1.3 45 28-80 11-55 (214)
175 1gk8_I Ribulose bisphosphate c 37.6 20 0.00068 23.6 2.2 18 58-75 22-39 (140)
176 1b4a_A Arginine repressor; hel 37.6 82 0.0028 20.4 5.5 58 24-88 6-63 (149)
177 1wdd_S Ribulose bisphosphate c 37.4 20 0.00069 23.2 2.2 18 58-75 22-39 (128)
178 2qq9_A Diphtheria toxin repres 37.4 14 0.00047 25.1 1.5 26 54-79 33-58 (226)
179 1bwv_S Rubisco, protein (ribul 37.4 20 0.00069 23.5 2.2 18 58-75 15-32 (138)
180 4dhx_B Enhancer of yellow 2 tr 36.4 51 0.0018 20.2 3.9 51 23-77 45-97 (101)
181 1bja_A Transcription regulator 36.3 19 0.00066 22.0 1.9 24 54-77 40-63 (95)
182 2cpg_A REPA protein, transcrip 36.1 17 0.00057 18.1 1.4 40 32-71 1-41 (45)
183 2wte_A CSA3; antiviral protein 35.8 43 0.0015 23.2 3.9 47 25-79 154-200 (244)
184 3g20_A Type II secretion prote 35.7 46 0.0016 20.8 3.7 32 53-88 42-88 (123)
185 1uss_A Histone H1; DNA binding 35.1 54 0.0019 19.3 3.8 55 23-78 13-70 (88)
186 2dql_A PEX protein; circadian 34.4 77 0.0026 19.1 5.1 49 28-78 27-75 (115)
187 1uhm_A Histone H1, histone HHO 34.0 42 0.0014 19.3 3.1 51 23-78 10-66 (78)
188 1u5t_B Defective in vacuolar p 33.4 58 0.002 21.5 4.1 33 51-83 126-158 (169)
189 1v4r_A Transcriptional repress 33.4 5.1 0.00017 23.7 -1.1 27 54-80 44-70 (102)
190 1z6r_A MLC protein; transcript 33.3 70 0.0024 23.0 4.9 45 26-78 19-63 (406)
191 4fx0_A Probable transcriptiona 32.9 18 0.00061 22.6 1.4 29 49-77 56-84 (148)
192 3rhi_A DNA-binding protein HU; 32.7 61 0.0021 18.9 3.8 38 36-77 2-41 (93)
193 3f6v_A Possible transcriptiona 32.5 38 0.0013 21.6 3.0 54 23-85 58-111 (151)
194 1hw1_A FADR, fatty acid metabo 32.4 15 0.00053 24.5 1.1 29 53-81 39-67 (239)
195 2ra5_A Putative transcriptiona 32.3 7.2 0.00025 26.9 -0.6 31 50-80 45-75 (247)
196 3e1s_A Exodeoxyribonuclease V, 32.1 96 0.0033 24.0 5.7 60 16-79 66-131 (574)
197 4f0h_B Ribulose bisphosphate c 32.0 30 0.001 22.7 2.4 19 58-76 15-33 (138)
198 2np2_A HBB; protein-DNA comple 31.9 79 0.0027 19.0 4.3 36 36-71 7-43 (108)
199 1sfu_A 34L protein; protein/Z- 31.5 23 0.00078 20.9 1.6 34 51-84 35-68 (75)
200 1t92_A General secretion pathw 31.4 9 0.00031 24.3 -0.2 32 53-88 31-77 (116)
201 2lkp_A Transcriptional regulat 31.2 19 0.00064 21.4 1.2 38 36-81 44-81 (119)
202 3cuq_B Vacuolar protein-sortin 30.0 81 0.0028 21.6 4.5 34 54-87 177-210 (218)
203 1r1t_A Transcriptional repress 29.9 21 0.00071 21.9 1.3 51 26-85 49-99 (122)
204 3g2b_A Coenzyme PQQ synthesis 28.8 45 0.0015 19.9 2.7 32 45-76 59-94 (95)
205 1txp_A HnRNP C, heterogeneous 28.1 45 0.0015 16.0 2.1 13 60-72 9-21 (28)
206 1bia_A BIRA bifunctional prote 28.0 1E+02 0.0035 21.9 4.9 44 26-77 8-51 (321)
207 2y75_A HTH-type transcriptiona 27.6 41 0.0014 20.3 2.4 27 54-80 35-61 (129)
208 3elk_A Putative transcriptiona 27.4 1.1E+02 0.0037 18.6 5.3 56 20-78 11-66 (117)
209 3dup_A MUTT/nudix family prote 27.4 60 0.002 23.4 3.6 36 39-78 235-270 (300)
210 2qc0_A Uncharacterized protein 27.1 55 0.0019 23.9 3.4 34 50-83 316-349 (373)
211 1z05_A Transcriptional regulat 27.0 58 0.002 23.8 3.5 45 26-78 42-86 (429)
212 3eqx_A FIC domain containing t 26.9 55 0.0019 24.1 3.4 33 51-83 317-349 (373)
213 3c1d_A Protein ORAA, regulator 26.6 55 0.0019 21.0 3.0 19 57-75 44-62 (159)
214 2xrn_A HTH-type transcriptiona 26.1 28 0.00096 23.6 1.6 36 37-80 21-56 (241)
215 1f1e_A Histone fold protein; a 26.0 89 0.003 20.6 4.0 27 53-79 54-80 (154)
216 4a0z_A Transcription factor FA 25.5 65 0.0022 21.5 3.3 45 26-78 15-59 (190)
217 2heo_A Z-DNA binding protein 1 25.3 28 0.00094 19.2 1.2 44 27-78 14-58 (67)
218 1q1v_A DEK protein; winged-hel 24.9 1E+02 0.0035 17.5 4.1 46 23-70 16-62 (70)
219 2o0y_A Transcriptional regulat 24.8 37 0.0013 23.3 2.0 45 28-80 28-73 (260)
220 1wlq_C CDT1 protein; coiled-co 24.5 67 0.0023 22.2 3.2 29 28-56 49-78 (201)
221 2zfw_A PEX; five alpha-helices 24.4 79 0.0027 20.3 3.4 50 27-78 48-97 (148)
222 2krc_A DNA-directed RNA polyme 23.9 71 0.0024 19.5 2.9 29 23-52 15-44 (99)
223 1d8j_A General transcription f 23.8 59 0.002 19.4 2.5 58 23-89 11-76 (81)
224 1no1_A G39P, replisome organiz 23.7 58 0.002 20.9 2.6 34 37-70 39-73 (126)
225 1hst_A Histone H5; chromosomal 23.5 67 0.0023 19.1 2.7 53 23-78 13-66 (90)
226 2yu3_A DNA-directed RNA polyme 23.4 33 0.0011 20.8 1.3 25 55-79 63-87 (95)
227 1cf7_B Protein (transcription 22.0 74 0.0025 19.4 2.7 55 24-78 15-80 (95)
228 2wa0_A Melanoma-associated ant 21.7 31 0.0011 24.3 1.1 54 34-88 136-196 (240)
229 1nkp_A C-MYC, MYC proto-oncoge 21.5 1.3E+02 0.0045 17.6 4.4 24 7-30 4-27 (88)
230 2l69_A Rossmann 2X3 fold prote 21.4 54 0.0018 20.6 2.0 15 57-71 108-122 (134)
231 1mkm_A ICLR transcriptional re 21.2 67 0.0023 21.7 2.7 34 37-78 23-56 (249)
232 2pi2_A Replication protein A 3 21.0 20 0.0007 25.2 0.0 47 24-77 208-257 (270)
233 2klq_A CBD, P105MCM, DNA repli 20.6 1.6E+02 0.0054 18.1 5.9 53 21-73 13-77 (114)
234 2gqq_A Leucine-responsive regu 20.3 28 0.00096 22.1 0.6 46 24-77 14-59 (163)
235 1owf_A IHF-alpha, integration 20.1 1.4E+02 0.0049 17.4 4.4 37 37-77 2-40 (99)
No 1
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B
Probab=100.00 E-value=3.5e-38 Score=199.13 Aligned_cols=82 Identities=40% Similarity=0.713 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcccCCCccee
Q psy4179 7 LEQETTHKHIEEDRKLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTETHKDMYH 86 (89)
Q Consensus 7 ~e~~~t~~~v~~dR~~~i~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~~~~~~y~ 86 (89)
+|.++|++.+++||.+.||||||||||++|+|+|++|+.+|+++|++||+|++++||+|||+||++|||+|+++| +.|+
T Consensus 7 ~e~~~t~~~v~~dR~~~iqAaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIekeYleR~~~~-~~y~ 85 (88)
T 3o2p_E 7 TEDERIEKELNTERQIFLEACIVRIMKAKRNLPHTTLVNECIAQSHQRFNAKVSMVKRAIDSLIQKGYLQRGDDG-ESYA 85 (88)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECTTS-SEEE
T ss_pred chHHHHHHHHHHHhhhhhheeeehhhcccccccHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhhHHhcCCCC-CeEE
Confidence 588999999999999999999999999999999999999999999999999999999999999999999999988 9999
Q ss_pred ecC
Q psy4179 87 YLA 89 (89)
Q Consensus 87 Yia 89 (89)
|+|
T Consensus 86 YlA 88 (88)
T 3o2p_E 86 YLA 88 (88)
T ss_dssp ECC
T ss_pred eeC
Confidence 997
No 2
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34
Probab=100.00 E-value=5.4e-40 Score=208.88 Aligned_cols=89 Identities=49% Similarity=0.699 Sum_probs=85.6
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcccC
Q psy4179 1 MKTELKLEQETTHKHIEEDRKLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTET 80 (89)
Q Consensus 1 ~k~e~~~e~~~t~~~v~~dR~~~i~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~~ 80 (89)
+++|+++|.++|++.+++||.+.||||||||||++|+|+|++|+.+|+++|++||+|++++||++||+||++|||+|+++
T Consensus 4 ~~~e~~~e~~~t~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIereYleR~~~ 83 (92)
T 1iuy_A 4 KQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPE 83 (92)
T ss_dssp CCCCCCCCCCCCCSCSCCCTTTHHHHHHHHHHHHHCEEEHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHTTSEEECSS
T ss_pred cccccHHHHHHHHHHHHHHHHHHeeeeeeehhhccccccHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhhhhhhhcCCC
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeecC
Q psy4179 81 HKDMYHYLA 89 (89)
Q Consensus 81 ~~~~y~Yia 89 (89)
|++.|+|+|
T Consensus 84 d~~~y~Y~A 92 (92)
T 1iuy_A 84 DRKVYTYVA 92 (92)
T ss_dssp CSSEEEEC-
T ss_pred CCCeeEecC
Confidence 999999997
No 3
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C
Probab=100.00 E-value=1.3e-37 Score=192.36 Aligned_cols=76 Identities=79% Similarity=1.129 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcccCCCcceeecC
Q psy4179 14 KHIEEDRKLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTETHKDMYHYLA 89 (89)
Q Consensus 14 ~~v~~dR~~~i~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~~~~~~y~Yia 89 (89)
+.+++||.+.||||||||||++|+|+|++|+++|+++|++||+|++++||+|||+||++|||+|+++|+++|+|+|
T Consensus 2 k~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIereYl~R~~~~~~~y~Y~A 77 (77)
T 3tdu_C 2 SNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 77 (77)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEEEEECC
T ss_pred cchhhhhhheEeeEEeeeecccceeeHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHhhhHhhcCCCCCceEEEeC
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999999997
No 4
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=2.2e-37 Score=199.79 Aligned_cols=85 Identities=46% Similarity=0.689 Sum_probs=82.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcccCCC
Q psy4179 3 TELKLEQETTHKHIEEDRKLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTETHK 82 (89)
Q Consensus 3 ~e~~~e~~~t~~~v~~dR~~~i~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~~~~ 82 (89)
+|+++|.+.|++.+++||.+.||||||||||++|+|+|++|+.+|+++|+ |+|++++||++||+||++|||+|+++|+
T Consensus 11 ke~~~e~~~t~~~v~~dR~~~iqAaIVRIMK~rK~l~h~~Lv~eV~~ql~--F~p~~~~IKk~IE~LIereYleR~~~d~ 88 (101)
T 2do7_A 11 KETVEEQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLK--FPVKPADLKKRIESLIDRDYMERDKENP 88 (101)
T ss_dssp CCCCCCCSSCCSHHHHHHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHHCS--SCCCHHHHHHHHHHHHHTTSEEECSSCT
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHcC--CCCCHHHHHHHHHHHhhhhHHhcCCCCC
Confidence 47888999999999999999999999999999999999999999999998 9999999999999999999999999999
Q ss_pred cceeecC
Q psy4179 83 DMYHYLA 89 (89)
Q Consensus 83 ~~y~Yia 89 (89)
+.|+|+|
T Consensus 89 ~~y~YlA 95 (101)
T 2do7_A 89 NQYNYIA 95 (101)
T ss_dssp TEEEECC
T ss_pred CeEEEec
Confidence 9999997
No 5
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=99.98 E-value=6.8e-33 Score=210.35 Aligned_cols=87 Identities=33% Similarity=0.502 Sum_probs=84.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcccCCC
Q psy4179 3 TELKLEQETTHKHIEEDRKLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTETHK 82 (89)
Q Consensus 3 ~e~~~e~~~t~~~v~~dR~~~i~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~~~~ 82 (89)
.++.+|.+++++.+++||.+.||||||||||++|+|+|++|+.+|++++++||.|++.+||+|||.||++|||+||++|+
T Consensus 296 ~~~~~e~~~~~~~v~edR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~Ie~LIereYleR~~~d~ 375 (382)
T 3dpl_C 296 LTTERMREEENEGIVQLRILRTQEAIIQIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKEQIEWLIEHKYIRRDESDI 375 (382)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEECHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHTTSEEEETTEE
T ss_pred cccchhhhhhHHHHHHHhhheeeEEEehhhhccCcccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhhhccCCCCC
Confidence 35677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeecC
Q psy4179 83 DMYHYLA 89 (89)
Q Consensus 83 ~~y~Yia 89 (89)
++|+|+|
T Consensus 376 ~~y~YlA 382 (382)
T 3dpl_C 376 NTFIYMA 382 (382)
T ss_dssp EEEEECC
T ss_pred CeEEEcC
Confidence 9999998
No 6
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=99.96 E-value=7e-30 Score=206.75 Aligned_cols=88 Identities=81% Similarity=1.101 Sum_probs=85.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcccCC
Q psy4179 2 KTELKLEQETTHKHIEEDRKLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTETH 81 (89)
Q Consensus 2 k~e~~~e~~~t~~~v~~dR~~~i~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~~~ 81 (89)
++|+++|.+.|++.+++||.+.|+||||||||++|+|+|++|+.+|++++++||+|++++||+|||.||++|||+|+++|
T Consensus 673 ~~e~~~e~~~~~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~Ie~LIereYl~R~~~~ 752 (760)
T 1ldj_A 673 KTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGE 752 (760)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECSSS
T ss_pred ccccchhhhhHHHHHHHHHHhHheeeehhhhhccCCCcHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhccceeeCCCC
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeecC
Q psy4179 82 KDMYHYLA 89 (89)
Q Consensus 82 ~~~y~Yia 89 (89)
+++|+|+|
T Consensus 753 ~~~y~YlA 760 (760)
T 1ldj_A 753 KDTYSYLA 760 (760)
T ss_dssp TTEEEECC
T ss_pred CcceeeCC
Confidence 99999998
No 7
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E*
Probab=99.95 E-value=3.4e-28 Score=196.89 Aligned_cols=85 Identities=46% Similarity=0.684 Sum_probs=82.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcccCCC
Q psy4179 3 TELKLEQETTHKHIEEDRKLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTETHK 82 (89)
Q Consensus 3 ~e~~~e~~~t~~~v~~dR~~~i~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~~~~ 82 (89)
+|+++|.+.|++.+++||.+.|+||||||||++|+|+|++|+.+|+++++ |+|++++||++||.||++|||+|+++|+
T Consensus 675 ~e~~~e~~~t~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~--F~p~~~~IKk~Ie~LIereYleR~~~~~ 752 (759)
T 2hye_C 675 KETVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQLK--FPVKPGDLKKRIESLIDRDYMERDKDNP 752 (759)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSEEETHHHHHHHHHHSS--SCCCHHHHHHHHHHHHHTTSCBCCSSCT
T ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC--CCCCHHHHHHHHHHHhcccceecCCCCC
Confidence 37888999999999999999999999999999999999999999999997 9999999999999999999999999999
Q ss_pred cceeecC
Q psy4179 83 DMYHYLA 89 (89)
Q Consensus 83 ~~y~Yia 89 (89)
++|+|+|
T Consensus 753 ~~y~YlA 759 (759)
T 2hye_C 753 NQYHYVA 759 (759)
T ss_dssp TEEECCC
T ss_pred CeeEecC
Confidence 9999998
No 8
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=94.80 E-value=0.056 Score=31.37 Aligned_cols=59 Identities=12% Similarity=0.242 Sum_probs=43.4
Q ss_pred HHHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcccCCCcceeec
Q psy4179 25 QAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTETHKDMYHYL 88 (89)
Q Consensus 25 ~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~~~~~~y~Yi 88 (89)
+..|..++-....++..+|...+-.. ..++.+.+...+..|.++|||.|..+ ...|.|.
T Consensus 11 e~~vL~~L~~~~~~t~~ei~~~l~~~----~~~s~~Tv~~~l~rL~~kGlv~r~~~-gr~~~y~ 69 (82)
T 1p6r_A 11 ELEVMKVIWKHSSINTNEVIKELSKT----STWSPKTIQTMLLRLIKKGALNHHKE-GRVFVYT 69 (82)
T ss_dssp HHHHHHHHHTSSSEEHHHHHHHHHHH----SCCCHHHHHHHHHHHHHTTSEEEEEE-TTEEEEE
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHhhc----CCccHHHHHHHHHHHHHCCCeEEEec-CCEEEEE
Confidence 44556666556778888888776432 23578889999999999999999764 3467774
No 9
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=94.50 E-value=0.06 Score=32.13 Aligned_cols=44 Identities=11% Similarity=0.184 Sum_probs=36.9
Q ss_pred HHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcc
Q psy4179 27 AIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERT 78 (89)
Q Consensus 27 aIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~ 78 (89)
.|...++.+..++.++|.. +|.++...|..-++.|.++|+|.|.
T Consensus 6 ~Il~~L~~~g~vsv~eLa~--------~l~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 6 QVRDLLALRGRMEAAQISQ--------TLNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHHSCSBCHHHHHH--------HTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHcCCCcHHHHHH--------HHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 3566677777888776654 5999999999999999999999997
No 10
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=94.19 E-value=0.036 Score=34.38 Aligned_cols=58 Identities=16% Similarity=0.268 Sum_probs=38.0
Q ss_pred HHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcccCCCcceeecC
Q psy4179 27 AIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTETHKDMYHYLA 89 (89)
Q Consensus 27 aIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~~~~~~y~Yia 89 (89)
.|.+++-....++-.+|... +.....++.+.+...|+.|.++|||.|..+ ...|.|-|
T Consensus 39 ~VL~~L~~~~~~t~~eL~~~----l~~~~~~s~sTVt~~L~rLe~KGlV~R~~~-gR~~~Y~p 96 (99)
T 2k4b_A 39 IVMRVIWSLGEARVDEIYAQ----IPQELEWSLATVKTLLGRLVKKEMLSTEKE-GRKFVYRP 96 (99)
T ss_dssp HHHHHHHHHSCEEHHHHHHT----CCGGGCCCHHHHHHHHHHHHHTTSCEEEEE-TTEEEEEC
T ss_pred HHHHHHHhCCCCCHHHHHHH----HhcccCCCHhhHHHHHHHHHHCCCEEEEeC-CCEEEEEE
Confidence 34444444444555555433 322223578999999999999999999764 56788865
No 11
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=94.10 E-value=0.16 Score=29.30 Aligned_cols=60 Identities=5% Similarity=0.132 Sum_probs=43.8
Q ss_pred HHHHHHhhccc--cccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcccCCCcceee
Q psy4179 25 QAAIVRIMKMR--KTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTETHKDMYHY 87 (89)
Q Consensus 25 ~AaIVRiMK~~--k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~~~~~~y~Y 87 (89)
..+|..++... ..++..+|...+.+.. ..++.+.+-..++.|.+.|+|.|...+.+...|
T Consensus 19 r~~IL~~l~~~~~~~~s~~el~~~l~~~~---~~is~~TVyR~L~~L~~~Glv~~~~~~~~~~~y 80 (83)
T 2fu4_A 19 RLKILEVLQEPDNHHVSAEDLYKRLIDMG---EEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVF 80 (83)
T ss_dssp HHHHHHHHTSGGGSSBCHHHHHHHHHHTT---CCCCHHHHHHHHHHHHHHTSEEEEECGGGCEEE
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHhC---CCCCHhhHHHHHHHHHHCCCeEEEeeCCCceEe
Confidence 34667777665 5799888887765432 246899999999999999999997653333444
No 12
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=93.42 E-value=0.077 Score=32.48 Aligned_cols=44 Identities=14% Similarity=0.264 Sum_probs=36.0
Q ss_pred HHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcc
Q psy4179 27 AIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERT 78 (89)
Q Consensus 27 aIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~ 78 (89)
.|...++.++.++..+|.. .|.++...|..-++.|.++|+|.|.
T Consensus 6 ~Il~~L~~~g~vsv~eLA~--------~l~VS~~TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 6 EVRDMLALQGRMEAKQLSA--------RLQTPQPLIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHHSCSEEHHHHHH--------HTTCCHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHHcCCCcHHHHHH--------HHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 3556667777777766653 5999999999999999999999997
No 13
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=92.77 E-value=0.14 Score=33.29 Aligned_cols=29 Identities=21% Similarity=0.255 Sum_probs=25.9
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHhhhhhc
Q psy4179 49 NQISLRFKPRVHVIKKCIDILIEKEYLER 77 (89)
Q Consensus 49 ~~l~~~F~p~~~~iK~~IE~LIekeYl~R 77 (89)
+.+..++..++..+-+.|..|+++|||.+
T Consensus 55 ~~LA~~~~~s~~~v~~~L~~L~~KGlI~i 83 (135)
T 2v79_A 55 NQLQEGMSISVEECTNRLRMFIQKGFLFI 83 (135)
T ss_dssp HHHHTTSSSCHHHHHHHHHHHHHHTSCEE
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 45667788899999999999999999999
No 14
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=92.57 E-value=0.13 Score=31.58 Aligned_cols=59 Identities=20% Similarity=0.343 Sum_probs=40.5
Q ss_pred HHHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcccCCCcceeec
Q psy4179 25 QAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTETHKDMYHYL 88 (89)
Q Consensus 25 ~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~~~~~~y~Yi 88 (89)
|..|..++-....++-.+|...+. ....++.+.+...+..|.++|||.|..++ ..+.|.
T Consensus 12 q~~vL~~L~~~~~~t~~el~~~l~----~~~~~~~~Tvt~~l~rLe~kGlv~R~~~~-r~~~~~ 70 (126)
T 1sd4_A 12 EWDVMNIIWDKKSVSANEIVVEIQ----KYKEVSDKTIRTLITRLYKKEIIKRYKSE-NIYFYS 70 (126)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHH----TTSCCCHHHHHHHHHHHHHTTSEEEEEET-TEEEEE
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHh----hcCCCChhhHHHHHHHHHHCCceEEEeCC-CeEEEE
Confidence 444555555556677666665543 12335788999999999999999998754 456663
No 15
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=92.11 E-value=0.9 Score=28.26 Aligned_cols=59 Identities=5% Similarity=0.018 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcc
Q psy4179 19 DRKLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERT 78 (89)
Q Consensus 19 dR~~~i~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~ 78 (89)
-++..++.+|..++. .+.+.--+|...+.+.....|.++...+-..+..|-+.|||.+.
T Consensus 8 ~~~g~l~~~IL~~L~-~~~~~Gyei~~~l~~~~~~~~~i~~gtly~~L~rLe~~GlI~~~ 66 (116)
T 3f8b_A 8 MLRAQTNVILLNVLK-QGDNYVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISSY 66 (116)
T ss_dssp HHHHHHHHHHHHHHH-HCCBCHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhchHHHHHHHHHH-hCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHCCCEEEE
Confidence 456778899999886 46788889999988888778899999999999999999999985
No 16
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=91.82 E-value=0.26 Score=30.03 Aligned_cols=58 Identities=21% Similarity=0.381 Sum_probs=40.8
Q ss_pred HHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcccCCCcceeec
Q psy4179 26 AAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTETHKDMYHYL 88 (89)
Q Consensus 26 AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~~~~~~y~Yi 88 (89)
..|..+......++-.+|...+-.. ...+.+.+...+..|.++|||.|..+|+ .+.|+
T Consensus 13 ~~vL~~l~~~~~~t~~ela~~l~~~----~~~s~~tv~~~l~~L~~~Glv~r~~~~r-r~~~~ 70 (123)
T 1okr_A 13 WEVMNIIWMKKYASANNIIEEIQMQ----KDWSPKTIRTLITRLYKKGFIDRKKDNK-IFQYY 70 (123)
T ss_dssp HHHHHHHHHHSSEEHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHTSEEEEEETT-EEEEE
T ss_pred HHHHHHHHhCCCcCHHHHHHHHhcc----CCCcHhhHHHHHHHHHHCCCeEEEecCC-eEEEE
Confidence 3444444446678888888776432 3367888999999999999999977543 45543
No 17
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=91.59 E-value=0.44 Score=28.12 Aligned_cols=57 Identities=11% Similarity=0.185 Sum_probs=38.8
Q ss_pred HHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcccCCCccee
Q psy4179 26 AAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTETHKDMYH 86 (89)
Q Consensus 26 AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~~~~~~y~ 86 (89)
..|...+.....++..+|...+ ...+..+.+.+-..|..|.++||+.|..+.+..+.
T Consensus 11 ~~iL~~l~~~~~~~~~el~~~l----a~~l~is~~tvs~~l~~Le~~gli~r~~~~r~~~~ 67 (99)
T 1tbx_A 11 AIVLAYLYDNEGIATYDLYKKV----NAEFPMSTATFYDAKKFLIQEGFVKERQERGEKRL 67 (99)
T ss_dssp HHHHHHHTTCTTCBHHHHHHHH----HTTSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred HHHHHHHHHcCCcCHHHHHHHH----HHHcCCCHHHHHHHHHHHHHCCCEEEEecCCceEE
Confidence 3344444445667766664433 34566889999999999999999999765444333
No 18
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=91.57 E-value=0.36 Score=28.73 Aligned_cols=55 Identities=15% Similarity=0.211 Sum_probs=45.4
Q ss_pred HHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcccCCCcceeecC
Q psy4179 27 AIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTETHKDMYHYLA 89 (89)
Q Consensus 27 aIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~~~~~~y~Yia 89 (89)
..|.-.|.+|.+...+|-. .|..+.+.+-.+|+.|.+.|-|.---+|+..|+|++
T Consensus 11 ~Fi~yIk~~Kvv~LedLA~--------~F~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs 65 (72)
T 1wi9_A 11 EFINYIKKSKVVLLEDLAF--------QMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYIT 65 (72)
T ss_dssp HHHHHHHHCSEECHHHHHH--------HHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECC
T ss_pred HHHHHHHHcCeeeHHHHHH--------HhCCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEec
Confidence 3467778888887766653 588999999999999999999988777888999984
No 19
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=90.00 E-value=0.35 Score=30.62 Aligned_cols=58 Identities=10% Similarity=0.113 Sum_probs=39.5
Q ss_pred HHHHHHhhcc-ccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcccCCCcceee
Q psy4179 25 QAAIVRIMKM-RKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTETHKDMYHY 87 (89)
Q Consensus 25 ~AaIVRiMK~-~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~~~~~~y~Y 87 (89)
|..|..++-. ...++-.+|...+.. .-..+.+.+...++.|.++|||.|..+ ...+.|
T Consensus 11 e~~vL~~L~~~~~~~t~~el~~~l~~----~~~~~~~Tvt~~l~rLe~kGlv~r~~~-~r~~~~ 69 (138)
T 2g9w_A 11 ERAVMDHLWSRTEPQTVRQVHEALSA----RRDLAYTTVMAVLQRLAKKNLVLQIRD-DRAHRY 69 (138)
T ss_dssp HHHHHHHHHTCSSCEEHHHHHHHHTT----TCCCCHHHHHHHHHHHHHTTSEEEEC----CCEE
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHhc----cCCCCHHHHHHHHHHHHHCCCEEEEec-CCeEEE
Confidence 4555666655 466777777765422 223678999999999999999999875 445666
No 20
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=89.35 E-value=0.6 Score=27.63 Aligned_cols=54 Identities=9% Similarity=0.111 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhhccc--cccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcccCC
Q psy4179 20 RKLLIQAAIVRIMKMR--KTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTETH 81 (89)
Q Consensus 20 R~~~i~AaIVRiMK~~--k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~~~ 81 (89)
|...|=..|-.-+..+ ...+..||... |-.+...+..-+..|-++|||.|+.+.
T Consensus 5 r~~~IL~~I~~~i~~~~g~~psv~EIa~~--------lgvS~~TVrr~L~~Le~kG~I~R~~gg 60 (77)
T 2jt1_A 5 IVTKIISIVQERQNMDDGAPVKTRDIADA--------AGLSIYQVRLYLEQLHDVGVLEKVNAG 60 (77)
T ss_dssp HHHHHHHHHHHHHHHHTTSCEEHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEESCS
T ss_pred HHHHHHHHHHHHHhhccCCCcCHHHHHHH--------HCCCHHHHHHHHHHHHHCCcEEecCCC
Confidence 3333333333333333 55666666544 334678899999999999999998754
No 21
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=89.32 E-value=0.25 Score=31.35 Aligned_cols=29 Identities=10% Similarity=0.161 Sum_probs=24.8
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHhhhhhcc
Q psy4179 50 QISLRFKPRVHVIKKCIDILIEKEYLERT 78 (89)
Q Consensus 50 ~l~~~F~p~~~~iK~~IE~LIekeYl~R~ 78 (89)
.+..++..+...+.+.|..|+++|||.|.
T Consensus 56 ~LA~~l~~s~~~V~~~l~~Le~kGlI~~~ 84 (128)
T 2vn2_A 56 ELAERMTVSAAECMEMVRRLLQKGMIAIE 84 (128)
T ss_dssp HHHHTSSSCHHHHHHHHHHHHHTTSSEEC
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 44456777899999999999999999995
No 22
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=89.10 E-value=0.59 Score=29.20 Aligned_cols=47 Identities=19% Similarity=0.328 Sum_probs=36.6
Q ss_pred HHHHHHHhhccccc--cCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcc
Q psy4179 24 IQAAIVRIMKMRKT--LQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERT 78 (89)
Q Consensus 24 i~AaIVRiMK~~k~--l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~ 78 (89)
.+..|..++..... ++-.+|...+ ..+.+.+-+.++.|.++||+.|.
T Consensus 27 ~e~~il~~L~~~~~~~~t~~eLa~~l--------~~s~sTV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 27 ADLNVMKSFLNEPDRWIDTDALSKSL--------KLDVSTVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp HHHHHHHHHHHSTTCCEEHHHHHHHH--------TSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEee
Confidence 46667777765555 8888886554 25788999999999999999995
No 23
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=88.91 E-value=0.85 Score=26.42 Aligned_cols=54 Identities=4% Similarity=0.054 Sum_probs=39.5
Q ss_pred HHHHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcccCCCcce
Q psy4179 24 IQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTETHKDMY 85 (89)
Q Consensus 24 i~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~~~~~~y 85 (89)
.+..|...+.....++..+|...+ ..+.+.+...+..|.+.||+.|..+.+..|
T Consensus 25 ~~~~il~~l~~~~~~s~~ela~~l--------~is~~tvs~~l~~L~~~glv~~~~~~r~~~ 78 (99)
T 3cuo_A 25 KRLLILCMLSGSPGTSAGELTRIT--------GLSASATSQHLARMRDEGLIDSQRDAQRIL 78 (99)
T ss_dssp HHHHHHHHHTTCCSEEHHHHHHHH--------CCCHHHHHHHHHHHHHTTSEEEEECSSCEE
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEEEecCCEEE
Confidence 455666777666678877766543 367888999999999999999976544333
No 24
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=88.11 E-value=0.86 Score=26.46 Aligned_cols=48 Identities=10% Similarity=0.318 Sum_probs=36.3
Q ss_pred HHHHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 24 IQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 24 i~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
.+..|...+.....++..+|...+ ..+.+.+-..+..|.++|||.|..
T Consensus 21 ~~~~il~~l~~~~~~s~~ela~~l--------~is~~tv~~~l~~L~~~glv~~~~ 68 (109)
T 1sfx_A 21 SDVRIYSLLLERGGMRVSEIAREL--------DLSARFVRDRLKVLLKRGFVRREI 68 (109)
T ss_dssp HHHHHHHHHHHHCCBCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEEEe
Confidence 355566666666677777776544 467889999999999999999964
No 25
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=87.01 E-value=1.7 Score=28.21 Aligned_cols=55 Identities=5% Similarity=0.105 Sum_probs=47.3
Q ss_pred HHHHHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcc
Q psy4179 23 LIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERT 78 (89)
Q Consensus 23 ~i~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~ 78 (89)
.++.+|..++. .+.++..+|...+.+.....|.++...+-..+..|.+.|||.|.
T Consensus 41 ~~~~~IL~~L~-~~~~~gyeI~~~l~~~~~~~~~is~gtLy~~L~rLE~~GlI~~~ 95 (145)
T 1xma_A 41 YVDTIILSLLI-EGDSYGYEISKNIRIKTDELYVIKETTLYSAFARLEKNGYIKSY 95 (145)
T ss_dssp THHHHHHHHHH-HCCEEHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cHHHHHHHHHH-hCCCCHHHHHHHHHHhhCCccCcChhHHHHHHHHHHHCCCEEEE
Confidence 46788888885 46788889999888887777889999999999999999999985
No 26
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=85.84 E-value=1.7 Score=26.95 Aligned_cols=44 Identities=11% Similarity=0.104 Sum_probs=29.6
Q ss_pred HHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhc
Q psy4179 26 AAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLER 77 (89)
Q Consensus 26 AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R 77 (89)
..|...+.....++..+|... +..+.+.+-..+..|.++|||.|
T Consensus 44 ~~iL~~l~~~~~~t~~eLa~~--------l~~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 44 LAMINVIYSTPGISVADLTKR--------LIITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp HHHHHHHHHSTTEEHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHCCCCCHHHHHHH--------HCCCHHHHHHHHHHHHHCCCEEe
Confidence 334444444444555554443 23578889999999999999999
No 27
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=85.22 E-value=1.7 Score=24.87 Aligned_cols=44 Identities=7% Similarity=0.118 Sum_probs=32.6
Q ss_pred HHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcc
Q psy4179 27 AIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERT 78 (89)
Q Consensus 27 aIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~ 78 (89)
.|...+.....++..+|... |..+.+.+.+.+..|.+.|+|.+.
T Consensus 4 ~Il~~L~~~~~~s~~eLa~~--------lgvs~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 4 EILEFLNRHNGGKTAEIAEA--------LAVTDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHHSCCCCHHHHHHH--------HTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHcCCCCHHHHHHH--------HCcCHHHHHHHHHHHHHCCCEEEe
Confidence 35556665566776666544 446788899999999999999954
No 28
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=84.93 E-value=0.68 Score=28.90 Aligned_cols=50 Identities=12% Similarity=0.242 Sum_probs=32.1
Q ss_pred HHHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhc----ccCCCc
Q psy4179 25 QAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLER----TETHKD 83 (89)
Q Consensus 25 ~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R----~~~~~~ 83 (89)
+..|...+ ....++..+|...+ ..+.+.+-..|..|.++||+.| +++|+-
T Consensus 40 q~~iL~~l-~~~~~t~~eLa~~l--------~~~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R 93 (151)
T 3kp7_A 40 QSHVLNML-SIEALTVGQITEKQ--------GVNKAAVSRRVKKLLNAELVKLEKPDSNTDQR 93 (151)
T ss_dssp HHHHHHHH-HHSCBCHHHHHHHH--------CSCSSHHHHHHHHHHHTTSEEC----------
T ss_pred HHHHHHHH-HcCCcCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEeeCCCCCCCCC
Confidence 44555556 66677777665443 3566778899999999999998 666653
No 29
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=84.47 E-value=2.1 Score=24.90 Aligned_cols=51 Identities=12% Similarity=0.180 Sum_probs=39.2
Q ss_pred HHHHHHhhcccc---ccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcccCCCc
Q psy4179 25 QAAIVRIMKMRK---TLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTETHKD 83 (89)
Q Consensus 25 ~AaIVRiMK~~k---~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~~~~~ 83 (89)
+-.|..+|+... .++..+|-..+ -++...|.+.|..|.+.|+|.|..+.+.
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~eLA~~L--------gvs~~tV~~~L~~L~~~G~I~~~g~~~~ 69 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDLSGKL--------GTPKKEINRVLYSLAKKGKLQKEAGTPP 69 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHHHHHH--------CCCHHHHHHHHHHHHHHTSEEEECSSSC
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEecCCCCC
Confidence 345677788888 88887776543 2667889999999999999999765553
No 30
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=84.13 E-value=0.6 Score=28.89 Aligned_cols=26 Identities=15% Similarity=0.408 Sum_probs=22.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhhhhhcc
Q psy4179 53 LRFKPRVHVIKKCIDILIEKEYLERT 78 (89)
Q Consensus 53 ~~F~p~~~~iK~~IE~LIekeYl~R~ 78 (89)
..+..+.+.+-..|..|.++|||.|.
T Consensus 61 ~~l~~~~~tvs~~l~~Le~~Glv~r~ 86 (127)
T 2frh_A 61 NHLNYKQPQVVKAVKILSQEDYFDKK 86 (127)
T ss_dssp HHSSSHHHHHHHHHHHHHHTTSSCCB
T ss_pred HHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 34557788999999999999999994
No 31
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=83.97 E-value=2.6 Score=27.23 Aligned_cols=47 Identities=21% Similarity=0.254 Sum_probs=40.7
Q ss_pred HHHHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcc
Q psy4179 24 IQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERT 78 (89)
Q Consensus 24 i~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~ 78 (89)
++-.|.+.+.....+++.+|-..+ -.+.+.+...|..|.+.|+|+|.
T Consensus 4 ~d~~il~~L~~~~~~s~~~la~~l--------g~s~~tv~~rl~~L~~~g~i~~~ 50 (162)
T 3i4p_A 4 LDRKILRILQEDSTLAVADLAKKV--------GLSTTPCWRRIQKMEEDGVIRRR 50 (162)
T ss_dssp HHHHHHHHHTTCSCSCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCeeec
Confidence 567889999999999998887654 37899999999999999999984
No 32
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=82.93 E-value=1.5 Score=28.14 Aligned_cols=52 Identities=8% Similarity=0.164 Sum_probs=37.7
Q ss_pred HHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcccC
Q psy4179 26 AAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTET 80 (89)
Q Consensus 26 AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~~ 80 (89)
-+|..++.....++-.+|...+.... ..++.+.|=+.++.|.+.|.+.|-..
T Consensus 22 ~~Il~~l~~~~h~ta~ei~~~l~~~~---~~is~~TVYR~L~~L~e~Glv~~i~~ 73 (145)
T 3eyy_A 22 QLVLEAVDTLEHATPDDILGEVRKTA---SGINISTVYRTLELLEELGLVSHAHL 73 (145)
T ss_dssp HHHHHHHHHHSSBCHHHHHHHHHTTC---TTCCHHHHHHHHHHHHHHTSEEEEEC
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHhhC---CCCCHhHHHHHHHHHHHCCcEEEEEe
Confidence 34555555545788888887664322 24689999999999999999999543
No 33
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=82.72 E-value=1.9 Score=26.74 Aligned_cols=47 Identities=15% Similarity=0.204 Sum_probs=37.1
Q ss_pred HHHHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcc
Q psy4179 24 IQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERT 78 (89)
Q Consensus 24 i~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~ 78 (89)
++..|.+.+.....+++.+|...+ -.+.+.+.+.+..|.+.|++.|.
T Consensus 5 ~~~~il~~L~~~~~~~~~ela~~l--------g~s~~tv~~~l~~L~~~G~i~~~ 51 (141)
T 1i1g_A 5 RDKIILEILEKDARTPFTEIAKKL--------GISETAVRKRVKALEEKGIIEGY 51 (141)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHH--------TSCHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEecc
Confidence 345677777777778888877654 35788999999999999999874
No 34
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=82.12 E-value=2.7 Score=24.97 Aligned_cols=49 Identities=14% Similarity=0.154 Sum_probs=35.5
Q ss_pred HHHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcccCCC
Q psy4179 25 QAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTETHK 82 (89)
Q Consensus 25 ~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~~~~ 82 (89)
+..|...+ ....++..+|... +..+.+.+...+..|.+.|||.|..+..
T Consensus 23 r~~IL~~L-~~~~~~~~ela~~--------l~is~~tv~~~l~~L~~~gli~~~~~gr 71 (114)
T 2oqg_A 23 RWEILTEL-GRADQSASSLATR--------LPVSRQAIAKHLNALQACGLVESVKVGR 71 (114)
T ss_dssp HHHHHHHH-HHSCBCHHHHHHH--------SSSCHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred HHHHHHHH-HcCCCCHHHHHHH--------HCcCHHHHHHHHHHHHHCCCeeEEecCC
Confidence 44555556 4556777666543 4578899999999999999999865433
No 35
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=81.85 E-value=3.6 Score=25.56 Aligned_cols=47 Identities=6% Similarity=0.075 Sum_probs=31.3
Q ss_pred HHHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 25 QAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 25 ~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
+..|...+.....++..+|.. .+..+.+.+-+.|..|.++|||.|..
T Consensus 46 ~~~iL~~l~~~~~~t~~ela~--------~l~is~~tvs~~l~~Le~~Gli~r~~ 92 (154)
T 2eth_A 46 ELYAFLYVALFGPKKMKEIAE--------FLSTTKSNVTNVVDSLEKRGLVVREM 92 (154)
T ss_dssp HHHHHHHHHHHCCBCHHHHHH--------HTTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHH--------HHCCCHHHHHHHHHHHHHCCCEEeeC
Confidence 333444444444455544443 34578889999999999999999953
No 36
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=81.56 E-value=3 Score=26.54 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhcc
Q psy4179 55 FKPRVHVIKKCIDILIEKEYLERT 78 (89)
Q Consensus 55 F~p~~~~iK~~IE~LIekeYl~R~ 78 (89)
+..+.+.+-..|..|.++|||.|.
T Consensus 69 l~is~~tvs~~l~~Le~~GlV~r~ 92 (168)
T 2nyx_A 69 LGVQPSATGRMVDRLVGAELIDRL 92 (168)
T ss_dssp HTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred hCCCHHHHHHHHHHHHHCCCEEec
Confidence 456888999999999999999994
No 37
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=81.51 E-value=3.6 Score=24.28 Aligned_cols=52 Identities=12% Similarity=0.165 Sum_probs=39.9
Q ss_pred HHHHHHHhhcccc---ccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcccCCCc
Q psy4179 24 IQAAIVRIMKMRK---TLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTETHKD 83 (89)
Q Consensus 24 i~AaIVRiMK~~k---~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~~~~~ 83 (89)
++-.|..+++... .++..+|-..+ -++...|.+.|..|.+.|+|.+..+.+.
T Consensus 11 ~~~~IL~~L~~~~pg~~~t~~eLA~~L--------gvsr~tV~~~L~~Le~~G~I~~~g~~~~ 65 (81)
T 1qbj_A 11 QEQRILKFLEELGEGKATTAHDLSGKL--------GTPKKEINRVLYSLAKKGKLQKEAGTPP 65 (81)
T ss_dssp HHHHHHHHHHHHCTTCCBCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEESSSSC
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEecCCCCC
Confidence 3455777888888 88888776553 3677889999999999999998655543
No 38
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=81.17 E-value=2.3 Score=24.49 Aligned_cols=47 Identities=11% Similarity=0.133 Sum_probs=34.2
Q ss_pred HHHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 25 QAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 25 ~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
+..|...+.....++..+|... +..+.+.+-..+..|.+.||+.|..
T Consensus 18 ~~~iL~~L~~~~~~~~~ela~~--------l~is~~tvs~~l~~L~~~gli~~~~ 64 (100)
T 1ub9_A 18 RLGIMIFLLPRRKAPFSQIQKV--------LDLTPGNLDSHIRVLERNGLVKTYK 64 (100)
T ss_dssp HHHHHHHHHHHSEEEHHHHHHH--------TTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHhcCCcCHHHHHHH--------HCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 4445555544566777776654 3478888999999999999999743
No 39
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=81.03 E-value=4 Score=24.79 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 55 FKPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 55 F~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
+..+.+.+-..+..|.++|||.|..
T Consensus 53 l~~s~~~vs~~l~~Le~~gli~r~~ 77 (144)
T 1lj9_A 53 IKVDRTTAARAIKRLEEQGFIYRQE 77 (144)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HCCCHhHHHHHHHHHHHCCCEEeec
Confidence 3468889999999999999999953
No 40
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=80.99 E-value=3.5 Score=25.12 Aligned_cols=46 Identities=20% Similarity=0.348 Sum_probs=31.3
Q ss_pred HHHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 25 QAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 25 ~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
+..|...+.... ++..+|...+ ..+.+.+-..+..|.++|||.|..
T Consensus 40 ~~~iL~~l~~~~-~t~~eLa~~l--------~~s~~tvs~~l~~L~~~Glv~r~~ 85 (146)
T 3tgn_A 40 QEHILMLLSEES-LTNSELARRL--------NVSQAAVTKAIKSLVKEGMLETSK 85 (146)
T ss_dssp HHHHHHHHTTCC-CCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHHHHhCC-CCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCeEecc
Confidence 344455555555 6665555443 467888999999999999999864
No 41
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=80.77 E-value=2.6 Score=25.42 Aligned_cols=47 Identities=19% Similarity=0.289 Sum_probs=31.6
Q ss_pred HHHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 25 QAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 25 ~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
+..|...+.....++..+|... +..+.+.+-..+..|.++||+.|..
T Consensus 31 ~~~iL~~l~~~~~~~~~ela~~--------l~~s~~tvs~~l~~L~~~glv~~~~ 77 (138)
T 3bpv_A 31 QVACLLRIHREPGIKQDELATF--------FHVDKGTIARTLRRLEESGFIEREQ 77 (138)
T ss_dssp HHHHHHHHHHSTTCBHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHH--------HCCCHHHHHHHHHHHHHCCCEEeec
Confidence 3344444444455555555443 3467888999999999999999953
No 42
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=80.13 E-value=3 Score=26.29 Aligned_cols=46 Identities=13% Similarity=0.266 Sum_probs=30.4
Q ss_pred HHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 26 AAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 26 AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
..|...+.....++..+|.. .+..+.+.+-..|..|.++|||.|..
T Consensus 49 ~~iL~~l~~~~~~t~~eLa~--------~l~~~~~tvs~~l~~Le~~Glv~r~~ 94 (162)
T 3k0l_A 49 FTALSVLAAKPNLSNAKLAE--------RSFIKPQSANKILQDLLANGWIEKAP 94 (162)
T ss_dssp HHHHHHHHHCTTCCHHHHHH--------HHTSCGGGHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHCCCCCHHHHHH--------HHCCCHHHHHHHHHHHHHCcCeEecC
Confidence 34444444444555544443 33467778899999999999999954
No 43
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=79.87 E-value=3.7 Score=25.09 Aligned_cols=27 Identities=26% Similarity=0.428 Sum_probs=22.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 53 LRFKPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 53 ~~F~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
..+..+.+.+-..|..|.++|||.|..
T Consensus 59 ~~l~~~~~~vs~~l~~L~~~Glv~r~~ 85 (143)
T 3oop_A 59 LWTKKDTPTVNRIVDVLLRKELIVREI 85 (143)
T ss_dssp HHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHCCCHhhHHHHHHHHHHCCCeeccC
Confidence 345578889999999999999999854
No 44
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=79.84 E-value=1.5 Score=26.47 Aligned_cols=27 Identities=15% Similarity=0.208 Sum_probs=22.7
Q ss_pred hcCCCCCCHHHHHHHHHHHHHhhhhhc
Q psy4179 51 ISLRFKPRVHVIKKCIDILIEKEYLER 77 (89)
Q Consensus 51 l~~~F~p~~~~iK~~IE~LIekeYl~R 77 (89)
|..+...+.+.+..+|..|..++||.|
T Consensus 42 La~~~~l~~~tvt~iLk~LE~kglIkr 68 (91)
T 2dk5_A 42 VRYKSNLPLTEINKILKNLESKKLIKA 68 (91)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCEEE
Confidence 344566788999999999999999995
No 45
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=79.42 E-value=8.6 Score=24.32 Aligned_cols=53 Identities=11% Similarity=0.083 Sum_probs=39.9
Q ss_pred HHHHHHhhcc-ccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcccC
Q psy4179 25 QAAIVRIMKM-RKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTET 80 (89)
Q Consensus 25 ~AaIVRiMK~-~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~~ 80 (89)
.-+|..++.. ...++..+|...+.... ..++.+.|=+.++.|.+.|.+.|-..
T Consensus 16 R~~Il~~L~~~~~h~sa~eI~~~l~~~~---~~is~aTVYR~L~~L~e~Glv~~~~~ 69 (139)
T 3mwm_A 16 RAAVSAALQEVEEFRSAQELHDMLKHKG---DAVGLTTVYRTLQSLADAGEVDVLRT 69 (139)
T ss_dssp HHHHHHHHTTCSSCEEHHHHHHHHHHTT---CCCCHHHHHHHHHHHHHTTSSEEEEC
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhC---CCCCHHHHHHHHHHHHHCCCEEEEEc
Confidence 3455666654 46789889988775432 34789999999999999999999643
No 46
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=79.41 E-value=3.9 Score=25.72 Aligned_cols=47 Identities=17% Similarity=0.264 Sum_probs=37.3
Q ss_pred HHHHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcc
Q psy4179 24 IQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERT 78 (89)
Q Consensus 24 i~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~ 78 (89)
++-.|.+.+.....+++.+|-.. +-.+.+.+...+..|.+.|+|.|.
T Consensus 10 ~d~~il~~L~~~~~~s~~ela~~--------lg~s~~tv~~~l~~L~~~G~i~~~ 56 (151)
T 2dbb_A 10 VDMQLVKILSENSRLTYRELADI--------LNTTRQRIARRIDKLKKLGIIRKF 56 (151)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHH--------TTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHH--------HCcCHHHHHHHHHHHHHCCCEEEE
Confidence 34467777777888888887654 346888999999999999999873
No 47
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=79.34 E-value=4.2 Score=24.65 Aligned_cols=25 Identities=12% Similarity=0.104 Sum_probs=21.5
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 55 FKPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 55 F~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
+..+.+.+-..+..|.++||+.|..
T Consensus 62 l~~s~~~vs~~l~~L~~~glv~r~~ 86 (146)
T 2fbh_A 62 VGVEGPTLARLLDGLESQGLVRRLA 86 (146)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred hCCChhhHHHHHHHHHHCCCeeecC
Confidence 3467888999999999999999954
No 48
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=79.20 E-value=3 Score=25.88 Aligned_cols=26 Identities=8% Similarity=0.226 Sum_probs=21.3
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 54 RFKPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 54 ~F~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
.+..+.+.+-..+..|.++|||.|..
T Consensus 64 ~l~~~~~~vs~~l~~L~~~Glv~r~~ 89 (149)
T 4hbl_A 64 HLDLSSNTLTPMLKRLEQSGWVKRER 89 (149)
T ss_dssp HHTCCHHHHHHHHHHHHHHTSEEC--
T ss_pred HHCCCHHHHHHHHHHHHHCCCEeeCC
Confidence 34578899999999999999999954
No 49
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=79.20 E-value=5.5 Score=21.22 Aligned_cols=53 Identities=19% Similarity=0.325 Sum_probs=36.9
Q ss_pred HHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcccCCCcceee
Q psy4179 28 IVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTETHKDMYHY 87 (89)
Q Consensus 28 IVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~~~~~~y~Y 87 (89)
|..++.....++..+|...+.+. -+.++.+.|...++ +-|.+ +-..+...+.|
T Consensus 10 i~~ll~~~~~~t~~el~~~l~~~---~~~vs~~Tv~R~L~---~lg~v-~~~~~~~~~~Y 62 (64)
T 2p5k_A 10 IREIITSNEIETQDELVDMLKQD---GYKVTQATVSRDIK---ELHLV-KVPTNNGSYKY 62 (64)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHHT---TCCCCHHHHHHHHH---HHTCE-EEEETTTEEEE
T ss_pred HHHHHHcCCCCCHHHHHHHHHHh---CCCcCHHHHHHHHH---HcCCE-EEecCCCceee
Confidence 34455677889999999887543 24578999999988 55788 65443445555
No 50
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=78.95 E-value=4.6 Score=25.16 Aligned_cols=25 Identities=12% Similarity=0.118 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 55 FKPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 55 F~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
+..+.+.+-..|..|.++|||.|..
T Consensus 76 l~is~~tvs~~l~~Le~~Gli~r~~ 100 (162)
T 3cjn_A 76 AVVEQSTLSRALDGLQADGLVRREV 100 (162)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HCCChhHHHHHHHHHHHCCCEEecC
Confidence 4468889999999999999999953
No 51
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=78.66 E-value=6.1 Score=24.83 Aligned_cols=53 Identities=4% Similarity=0.141 Sum_probs=39.9
Q ss_pred HHHHHHhhcc-c-cccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcccC
Q psy4179 25 QAAIVRIMKM-R-KTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTET 80 (89)
Q Consensus 25 ~AaIVRiMK~-~-k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~~ 80 (89)
..+|..++.. . +.++-.+|...+.+.. ..++.+.|=+.++.|.+.|.+.|-..
T Consensus 20 R~~Il~~L~~~~~~~~sa~ei~~~l~~~~---~~is~aTVYR~L~~L~e~Glv~~~~~ 74 (136)
T 1mzb_A 20 RVKILQMLDSAEQRHMSAEDVYKALMEAG---EDVGLATVYRVLTQFEAAGLVVRHNF 74 (136)
T ss_dssp HHHHHHHHHCC-CCSBCHHHHHHHHHHTT---CCCCHHHHHHHHHHHHHHTSEEEECS
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHhhC---CCCCHHHHHHHHHHHHHCCcEEEEEe
Confidence 3456666654 3 5799999998776543 24689999999999999999998653
No 52
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=78.50 E-value=6.2 Score=23.73 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhcc
Q psy4179 55 FKPRVHVIKKCIDILIEKEYLERT 78 (89)
Q Consensus 55 F~p~~~~iK~~IE~LIekeYl~R~ 78 (89)
+..+.+.+-..+..|.++||+.|.
T Consensus 58 l~~~~~tvs~~l~~L~~~gli~r~ 81 (138)
T 1jgs_A 58 LSVDLGALTRMLDRLVCKGWVERL 81 (138)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HCCChHHHHHHHHHHHHCCCEEec
Confidence 446888899999999999999995
No 53
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=78.23 E-value=3.2 Score=25.41 Aligned_cols=47 Identities=9% Similarity=0.133 Sum_probs=32.0
Q ss_pred HHHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 25 QAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 25 ~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
+..|...+-....++..+|... +..+.+.+-..+..|.++|||.|..
T Consensus 33 q~~iL~~l~~~~~~t~~eLa~~--------l~~~~~tvs~~l~~Le~~Glv~r~~ 79 (145)
T 3g3z_A 33 LFAVLYTLATEGSRTQKHIGEK--------WSLPKQTVSGVCKTLAGQGLIEWQE 79 (145)
T ss_dssp HHHHHHHHHHHCSBCHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHHHHHCCCCCHHHHHHH--------HCCCHHHHHHHHHHHHHCCCEeecc
Confidence 4444444444445555555433 3467888999999999999999954
No 54
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=78.19 E-value=1.2 Score=27.05 Aligned_cols=25 Identities=8% Similarity=0.054 Sum_probs=20.8
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhhcc
Q psy4179 54 RFKPRVHVIKKCIDILIEKEYLERT 78 (89)
Q Consensus 54 ~F~p~~~~iK~~IE~LIekeYl~R~ 78 (89)
.+..+.+.+-..+..|.++||+.|.
T Consensus 56 ~l~~~~~tvs~~l~~L~~~gli~r~ 80 (139)
T 3bja_A 56 NMGCVPSNMTTMIQRMKRDGYVMTE 80 (139)
T ss_dssp HCSSCCTTHHHHHHHHHHTTSEEEE
T ss_pred HHCCChhHHHHHHHHHHHCCCeeec
Confidence 3456777788999999999999994
No 55
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=78.05 E-value=1.2 Score=27.26 Aligned_cols=36 Identities=17% Similarity=0.241 Sum_probs=28.2
Q ss_pred ccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcc
Q psy4179 35 RKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERT 78 (89)
Q Consensus 35 ~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~ 78 (89)
...++..+|...+ ..+.+.+-..+..|.++||+.|.
T Consensus 39 ~~~~t~~ela~~l--------~~~~stvs~~l~~L~~~G~v~r~ 74 (152)
T 1ku9_A 39 DKPLTISDIMEEL--------KISKGNVSMSLKKLEELGFVRKV 74 (152)
T ss_dssp SSCEEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEEE
Confidence 4567766666543 35788899999999999999996
No 56
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=77.85 E-value=5.5 Score=24.33 Aligned_cols=27 Identities=7% Similarity=0.094 Sum_probs=22.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 53 LRFKPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 53 ~~F~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
..+..+.+.+-..+..|.++|||.|..
T Consensus 64 ~~l~~~~~tvs~~l~~Le~~Glv~r~~ 90 (150)
T 2rdp_A 64 NKMYLACSTTTDLVDRMERNGLVARVR 90 (150)
T ss_dssp HHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHCCCchhHHHHHHHHHHCCCeeecC
Confidence 345678899999999999999999953
No 57
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=77.10 E-value=3.3 Score=25.60 Aligned_cols=26 Identities=15% Similarity=0.157 Sum_probs=22.2
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 54 RFKPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 54 ~F~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
.+..+.+.+-..|..|.++|||.|..
T Consensus 70 ~l~~s~~tvs~~l~~Le~~glv~r~~ 95 (153)
T 2pex_A 70 RLYLDSATLTPLLKRLQAAGLVTRTR 95 (153)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HhCCCcccHHHHHHHHHHCCCEeecC
Confidence 34478899999999999999999954
No 58
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=77.04 E-value=2.4 Score=25.95 Aligned_cols=30 Identities=3% Similarity=0.121 Sum_probs=25.2
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 50 QISLRFKPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 50 ~l~~~F~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
.+...+..+.+.+-..+..|.++||+.|..
T Consensus 59 ~la~~l~~~~~tvs~~l~~L~~~glv~r~~ 88 (147)
T 1z91_A 59 KMGEQLYLDSGTLTPMLKRMEQQGLITRKR 88 (147)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHHTSEECCB
T ss_pred HHHHHHCCCcCcHHHHHHHHHHCCCEEecc
Confidence 344567789999999999999999999964
No 59
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=76.91 E-value=4.4 Score=25.38 Aligned_cols=47 Identities=13% Similarity=0.211 Sum_probs=38.3
Q ss_pred HHHHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcc
Q psy4179 24 IQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERT 78 (89)
Q Consensus 24 i~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~ 78 (89)
++-.|.+.+.....+++.+|-..+ -.+.+.+...+..|.+.|||.|.
T Consensus 4 ~~~~il~~L~~~~~~~~~ela~~l--------g~s~~tv~~~l~~L~~~G~i~~~ 50 (150)
T 2pn6_A 4 IDLRILKILQYNAKYSLDEIAREI--------RIPKATLSYRIKKLEKDGVIKGY 50 (150)
T ss_dssp HHHHHHHHHTTCTTSCHHHHHHHH--------TSCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCcEEEE
Confidence 455678888888888988887654 36788899999999999999983
No 60
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=76.81 E-value=5.3 Score=25.66 Aligned_cols=54 Identities=9% Similarity=0.238 Sum_probs=41.1
Q ss_pred HHHHHHHhhcc-ccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcccC
Q psy4179 24 IQAAIVRIMKM-RKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTET 80 (89)
Q Consensus 24 i~AaIVRiMK~-~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~~ 80 (89)
-..+|..++.. ...++-.+|...+.+.. ..++.+.|=..++.|.+.|++.|-..
T Consensus 28 qR~~IL~~l~~~~~~~sa~ei~~~l~~~~---~~is~aTVYR~L~~L~e~Glv~~~~~ 82 (150)
T 2xig_A 28 QREEVVSVLYRSGTHLSPEEITHSIRQKD---KNTSISSVYRILNFLEKENFISVLET 82 (150)
T ss_dssp HHHHHHHHHHHCSSCBCHHHHHHHHHHHS---TTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhC---CCCCHhhHHHHHHHHHHCCcEEEEEe
Confidence 34456666654 46799999998876543 24689999999999999999999643
No 61
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=76.68 E-value=4.3 Score=25.23 Aligned_cols=46 Identities=9% Similarity=0.223 Sum_probs=29.6
Q ss_pred HHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 26 AAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 26 AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
..|...+.....++..+|... +..+.+.+-..|..|.++|||.|..
T Consensus 52 ~~iL~~l~~~~~~t~~ela~~--------l~is~~tvs~~l~~Le~~glv~r~~ 97 (162)
T 2fa5_A 52 WRVITILALYPGSSASEVSDR--------TAMDKVAVSRAVARLLERGFIRRET 97 (162)
T ss_dssp HHHHHHHHHSTTCCHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHHHhCCCCCHHHHHHH--------HCCCHHHHHHHHHHHHHCCCEeeec
Confidence 334444444445555444432 3467888999999999999999954
No 62
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=76.57 E-value=3.7 Score=25.80 Aligned_cols=46 Identities=13% Similarity=0.140 Sum_probs=36.9
Q ss_pred HHHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcc
Q psy4179 25 QAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERT 78 (89)
Q Consensus 25 ~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~ 78 (89)
+-.|.+.+.....+++.+|-..+ -.+.+.+...+..|.+.|||.|.
T Consensus 7 d~~il~~L~~~~~~s~~ela~~l--------g~s~~tv~~~l~~L~~~G~i~~~ 52 (144)
T 2cfx_A 7 DLNIIEELKKDSRLSMRELGRKI--------KLSPPSVTERVRQLESFGIIKQY 52 (144)
T ss_dssp HHHHHHHHHHCSCCCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCeEEE
Confidence 44677777777888888877654 36788999999999999999974
No 63
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=76.48 E-value=5.9 Score=24.47 Aligned_cols=47 Identities=6% Similarity=0.070 Sum_probs=31.9
Q ss_pred HHHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 25 QAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 25 ~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
+..|...+.....++..+|.. .+..+.+.+-..+..|.++||+.|..
T Consensus 45 ~~~iL~~l~~~~~~t~~ela~--------~l~i~~~tvs~~l~~Le~~Glv~r~~ 91 (155)
T 3cdh_A 45 EWRVLACLVDNDAMMITRLAK--------LSLMEQSRMTRIVDQMDARGLVTRVA 91 (155)
T ss_dssp HHHHHHHHSSCSCBCHHHHHH--------HTTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHHHHHCCCcCHHHHHH--------HHCCCHHHHHHHHHHHHHCCCEEecc
Confidence 344444444444555544443 34578888999999999999999954
No 64
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=76.46 E-value=0.51 Score=27.79 Aligned_cols=39 Identities=10% Similarity=0.015 Sum_probs=29.9
Q ss_pred ccCcHHHHHHHHHHhcCCCCCCHHH-HHHHHHHHHHhhhhhcccCCCc
Q psy4179 37 TLQHQQLVAEVLNQISLRFKPRVHV-IKKCIDILIEKEYLERTETHKD 83 (89)
Q Consensus 37 ~l~~~~L~~ev~~~l~~~F~p~~~~-iK~~IE~LIekeYl~R~~~~~~ 83 (89)
.++..+|...+ ..+.+. +-..+..|.++|||.++++|+.
T Consensus 30 ~~t~~eLa~~l--------~is~~t~vs~~l~~Le~~Glv~~~~~drR 69 (95)
T 2pg4_A 30 EPSLAEIVKAS--------GVSEKTFFMGLKDRLIRAGLVKEETLSYR 69 (95)
T ss_dssp CCCHHHHHHHH--------CCCHHHHHTTHHHHHHHTTSEEEEEEETT
T ss_pred CCCHHHHHHHH--------CCCchHHHHHHHHHHHHCCCeecCCCCCC
Confidence 57777666443 357788 8999999999999998776654
No 65
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=76.30 E-value=3.6 Score=26.35 Aligned_cols=46 Identities=11% Similarity=0.143 Sum_probs=36.8
Q ss_pred HHHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcc
Q psy4179 25 QAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERT 78 (89)
Q Consensus 25 ~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~ 78 (89)
+-.|.+.+.....+++.+|-..+ -.+.+.+.+.+..|.+.|||.|.
T Consensus 12 ~~~il~~L~~~~~~s~~ela~~l--------g~s~~tv~~~l~~L~~~G~i~~~ 57 (162)
T 2p5v_A 12 DIKILQVLQENGRLTNVELSERV--------ALSPSPCLRRLKQLEDAGIVRQY 57 (162)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHH--------TSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEeee
Confidence 44577777777788888887654 35788899999999999999973
No 66
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=76.18 E-value=0.93 Score=28.01 Aligned_cols=47 Identities=15% Similarity=0.179 Sum_probs=31.4
Q ss_pred HHHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 25 QAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 25 ~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
+..|...+-....++..+|... +..+.+.+-..|..|.++|||.|..
T Consensus 38 q~~vL~~l~~~~~~t~~eLa~~--------l~~~~~tvs~~l~~L~~~Glv~r~~ 84 (140)
T 3hsr_A 38 GYIVLMAIENDEKLNIKKLGER--------VFLDSGTLTPLLKKLEKKDYVVRTR 84 (140)
T ss_dssp HHHHHHHSCTTCEEEHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHcCCcCHHHHHHH--------HCCChhhHHHHHHHHHHCCCeEecC
Confidence 3344444444444554444433 3468889999999999999999864
No 67
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=76.03 E-value=4.8 Score=25.65 Aligned_cols=54 Identities=7% Similarity=0.069 Sum_probs=39.4
Q ss_pred HHHHHHhhcc-ccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcccCC
Q psy4179 25 QAAIVRIMKM-RKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTETH 81 (89)
Q Consensus 25 ~AaIVRiMK~-~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~~~ 81 (89)
..+|..++.. ...++-.+|...+.... ..++.+.|=+.++.|.+.|++.|-..+
T Consensus 24 R~~Il~~L~~~~~~~sa~ei~~~l~~~~---~~is~aTVYR~L~~L~e~Glv~~~~~~ 78 (145)
T 2fe3_A 24 RHAILEYLVNSMAHPTADDIYKALEGKF---PNMSVATVYNNLRVFRESGLVKELTYG 78 (145)
T ss_dssp HHHHHHHHHHCSSCCCHHHHHHHHGGGC---TTCCHHHHHHHHHHHHHTTSEEEECCT
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhC---CCCChhhHHHHHHHHHHCCCEEEEeeC
Confidence 4456666644 56788888887664321 246899999999999999999996543
No 68
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=75.86 E-value=2.1 Score=25.73 Aligned_cols=44 Identities=9% Similarity=0.077 Sum_probs=32.7
Q ss_pred HHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 28 IVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 28 IVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
|...+. ...+++.+|...+ -..+.+.+-..+..|.+.|||+|..
T Consensus 19 IL~~L~-~~~~~~~eLa~~l-------~~is~~tls~~L~~Le~~GlI~r~~ 62 (107)
T 2hzt_A 19 ILXHLT-HGKKRTSELKRLM-------PNITQKMLTQQLRELEADGVINRIV 62 (107)
T ss_dssp HHHHHT-TCCBCHHHHHHHC-------TTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHH-hCCCCHHHHHHHh-------cCCCHHHHHHHHHHHHHCCCEEEee
Confidence 444444 5667877776542 1578999999999999999999853
No 69
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=75.72 E-value=1.3 Score=26.04 Aligned_cols=28 Identities=11% Similarity=0.067 Sum_probs=22.5
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhhcccCCC
Q psy4179 54 RFKPRVHVIKKCIDILIEKEYLERTETHK 82 (89)
Q Consensus 54 ~F~p~~~~iK~~IE~LIekeYl~R~~~~~ 82 (89)
++..+.+.+-..+..|.++||| +++.|+
T Consensus 39 ~l~i~~~tvs~~l~~Le~~Glv-~~~~d~ 66 (95)
T 2qvo_A 39 KVNSPHSYVWLIIKKFEEAKMV-ECELEG 66 (95)
T ss_dssp HSSSCHHHHHHHHHHHHHTTSE-EEEEET
T ss_pred HHCcCHHHHHHHHHHHHHCcCc-cCCCCC
Confidence 3557888999999999999999 555454
No 70
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=75.22 E-value=4.4 Score=25.59 Aligned_cols=46 Identities=7% Similarity=0.089 Sum_probs=37.7
Q ss_pred HHHHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhc
Q psy4179 24 IQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLER 77 (89)
Q Consensus 24 i~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R 77 (89)
++..|.+.+.....+++.+|-..+ -.+.+.+...+..|.+.|+|.|
T Consensus 9 ~d~~il~~L~~~~~~s~~ela~~l--------g~s~~tv~~~l~~L~~~G~i~~ 54 (152)
T 2cg4_A 9 LDRGILEALMGNARTAYAELAKQF--------GVSPETIHVRVEKMKQAGIITG 54 (152)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHH--------TSCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHcCCcce
Confidence 345677778888889988887654 3678889999999999999998
No 71
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=75.21 E-value=7.3 Score=23.39 Aligned_cols=47 Identities=15% Similarity=0.280 Sum_probs=31.9
Q ss_pred HHHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 25 QAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 25 ~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
+..|...+.....++..+|... +..+.+.+-..+..|.++||+.|..
T Consensus 33 ~~~iL~~l~~~~~~~~~ela~~--------l~is~~~vs~~l~~L~~~gli~~~~ 79 (142)
T 3bdd_A 33 RYSILQTLLKDAPLHQLALQER--------LQIDRAAVTRHLKLLEESGYIIRKR 79 (142)
T ss_dssp HHHHHHHHHHHCSBCHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHhCCCCCHHHHHHH--------HCCCHHHHHHHHHHHHHCCCEEecC
Confidence 3334444444445555555433 3468888999999999999999864
No 72
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=75.05 E-value=2.7 Score=25.63 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=22.1
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 54 RFKPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 54 ~F~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
.+..+.+.+-..+..|.++||+.|..
T Consensus 59 ~l~~s~~tvs~~l~~Le~~glv~r~~ 84 (146)
T 2gxg_A 59 RYFVTQSAITASVDKLEEMGLVVRVR 84 (146)
T ss_dssp HTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HhCCCchhHHHHHHHHHHCCCEEeec
Confidence 34578889999999999999999853
No 73
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=74.87 E-value=5.3 Score=25.69 Aligned_cols=52 Identities=6% Similarity=0.193 Sum_probs=40.0
Q ss_pred HHHHHHhhccc--cccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 25 QAAIVRIMKMR--KTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 25 ~AaIVRiMK~~--k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
..+|..++... ..++-.+|...+.... ..++.+.|=+.++.|.+.|.|.|-.
T Consensus 19 R~~Il~~L~~~~~~h~sa~ei~~~l~~~~---~~is~aTVYR~L~~L~e~Glv~~~~ 72 (150)
T 2w57_A 19 RLKILEVLQQPECQHISAEELYKKLIDLG---EEIGLATVYRVLNQFDDAGIVTRHH 72 (150)
T ss_dssp HHHHHHHHTSGGGSSEEHHHHHHHHHHTT---CCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHhC---CCCCHHHHHHHHHHHHHCCcEEEEE
Confidence 44566666544 5789999988776543 2468999999999999999999864
No 74
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=74.84 E-value=1.4 Score=26.75 Aligned_cols=29 Identities=14% Similarity=0.189 Sum_probs=24.0
Q ss_pred hcCCCCCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 51 ISLRFKPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 51 l~~~F~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
+...+..+.+.+-..+..|.++||+.|..
T Consensus 58 la~~l~~~~~tvs~~l~~L~~~glv~r~~ 86 (140)
T 2nnn_A 58 LGRLTAMDAATIKGVVERLDKRGLIQRSA 86 (140)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCEEeeC
Confidence 33456678999999999999999999953
No 75
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=74.57 E-value=6.2 Score=26.13 Aligned_cols=56 Identities=13% Similarity=0.125 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhhcccc-ccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcccCCC
Q psy4179 19 DRKLLIQAAIVRIMKMRK-TLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTETHK 82 (89)
Q Consensus 19 dR~~~i~AaIVRiMK~~k-~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~~~~ 82 (89)
.|...|=.+|...+..+. ..+..||...+ -.+.+.+...+..|-++|||.|+++.+
T Consensus 5 ~~q~~il~~I~~~~~~~g~~~s~~eia~~l--------gl~~~tv~~~l~~Le~~G~i~~~~~~~ 61 (196)
T 3k2z_A 5 ERQRKVLLFIEEFIEKNGYPPSVREIARRF--------RITPRGALLHLIALEKKGYIERKNGKP 61 (196)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCHHHHHHHH--------TSCHHHHHHHHHHHHHTTSEECC---T
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHc--------CCCcHHHHHHHHHHHHCCCEEecCCCc
Confidence 355566666777666554 57777766543 233446899999999999999987643
No 76
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=74.44 E-value=4.7 Score=26.47 Aligned_cols=56 Identities=9% Similarity=0.137 Sum_probs=45.7
Q ss_pred HHHHHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 23 LIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 23 ~i~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
.++-+|..++.. +.++-.+|...+-..+...+.++...|-..+..|-+.|||.+..
T Consensus 2 ~l~~~iL~lL~~-~~~~gyel~~~l~~~~~~~~~~s~~~ly~~L~~Le~~GlI~~~~ 57 (179)
T 1yg2_A 2 SLPHVILTVLST-RDATGYDITKEFSASIGYFWKASHQQVYRELNKMGEQGLVTCVL 57 (179)
T ss_dssp CHHHHHHHHHHH-CCBCHHHHHHHHTTGGGGTCCCCHHHHHHHHHHHHHTTSEEECC
T ss_pred chHHHHHHHHhc-CCCCHHHHHHHHHHHhCCccCCCcCcHHHHHHHHHHCCCeEEEe
Confidence 355667777764 77888899988876666667899999999999999999999854
No 77
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=74.42 E-value=1.3 Score=27.09 Aligned_cols=25 Identities=12% Similarity=0.100 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 55 FKPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 55 F~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
+..+.+.+-..|..|.++|||.|..
T Consensus 57 l~~~~~tvs~~l~~Le~~Gli~r~~ 81 (139)
T 3eco_A 57 LQRTGPTVSNLLRNLERKKLIYRYV 81 (139)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred hCCCcccHHHHHHHHHHCCCEeecC
Confidence 4467889999999999999999853
No 78
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=73.91 E-value=1.3 Score=26.93 Aligned_cols=25 Identities=16% Similarity=0.127 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 55 FKPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 55 F~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
+..+.+.+-..+..|.++|||.|..
T Consensus 60 l~~~~~tvs~~l~~Le~~Gli~r~~ 84 (141)
T 3bro_A 60 FSIKSSTATVLLQRMEIKKLLYRKV 84 (141)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HCCCcchHHHHHHHHHHCCCEEeeC
Confidence 3467888999999999999999853
No 79
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=73.60 E-value=2.9 Score=25.32 Aligned_cols=51 Identities=10% Similarity=0.145 Sum_probs=34.4
Q ss_pred HHHhhccccccCcHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHhhhhhccc--CCCcceee
Q psy4179 28 IVRIMKMRKTLQHQQLVAEVLNQISLRF-KPRVHVIKKCIDILIEKEYLERTE--THKDMYHY 87 (89)
Q Consensus 28 IVRiMK~~k~l~~~~L~~ev~~~l~~~F-~p~~~~iK~~IE~LIekeYl~R~~--~~~~~y~Y 87 (89)
|...+. ...++..+|... + ..+.+.+-..+..|.+.|||.|.. +|+....|
T Consensus 27 IL~~L~-~~~~~~~eLa~~--------l~~is~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~ 80 (112)
T 1z7u_A 27 LMDELF-QGTKRNGELMRA--------LDGITQRVLTDRLREMEKDGLVHRESFNELPPRVEY 80 (112)
T ss_dssp HHHHHH-HSCBCHHHHHHH--------STTCCHHHHHHHHHHHHHHTSEEEEEECCSSCEEEE
T ss_pred HHHHHH-hCCCCHHHHHHH--------hccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEE
Confidence 444443 356777666543 3 578899999999999999999853 34443333
No 80
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=73.58 E-value=1.7 Score=26.55 Aligned_cols=47 Identities=6% Similarity=0.177 Sum_probs=29.9
Q ss_pred HHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcccC
Q psy4179 26 AAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTET 80 (89)
Q Consensus 26 AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~~ 80 (89)
..|...+.....++..+|.. .+..+.+.+-..+..|.++|||.|..+
T Consensus 40 ~~iL~~l~~~~~~~~~ela~--------~l~~~~~tvs~~l~~L~~~gli~r~~~ 86 (142)
T 2bv6_A 40 FLVLTILWDESPVNVKKVVT--------ELALDTGTVSPLLKRMEQVDLIKRERS 86 (142)
T ss_dssp HHHHHHHHHSSEEEHHHHHH--------HTTCCTTTHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHcCCcCHHHHHH--------HHCCChhhHHHHHHHHHHCCCEEeecC
Confidence 33444444444455444433 234567778899999999999999643
No 81
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=73.55 E-value=5.6 Score=25.08 Aligned_cols=46 Identities=13% Similarity=0.149 Sum_probs=36.9
Q ss_pred HHHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcc
Q psy4179 25 QAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERT 78 (89)
Q Consensus 25 ~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~ 78 (89)
+-.|.+.+.....+++.+|-..+ -.+.+.+.+.+..|.+.|+|.|.
T Consensus 9 ~~~il~~L~~~~~~s~~ela~~l--------g~s~~tv~~~l~~L~~~G~i~~~ 54 (151)
T 2cyy_A 9 DKKIIKILQNDGKAPLREISKIT--------GLAESTIHERIRKLRESGVIKKF 54 (151)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHH--------CSCHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCeEEE
Confidence 44577777777888888877654 36788899999999999999873
No 82
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=73.27 E-value=5.2 Score=24.20 Aligned_cols=55 Identities=15% Similarity=0.111 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 20 RKLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 20 R~~~i~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
++..++.+|..++.. +.++-.+|..++.+ .+.++...+-..+..|-+.|||.|..
T Consensus 6 ~~g~l~~~IL~~L~~-~~~~gyel~~~l~~----~~~i~~~tly~~L~~Le~~GlI~~~~ 60 (108)
T 3l7w_A 6 SALLIEYLILAIVSK-HDSYGYDISQTIKL----IASIKESTLYPILKKLEKAGYLSTYT 60 (108)
T ss_dssp CHHHHHHHHHHHHHH-SCEEHHHHHHHHTT----TCCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHHHc-CCCcHHHHHHHHHH----HhCCCcChHHHHHHHHHHCCCeEEEe
Confidence 345677888888864 56666677766543 57899999999999999999999863
No 83
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=73.22 E-value=5 Score=26.30 Aligned_cols=47 Identities=15% Similarity=0.174 Sum_probs=38.9
Q ss_pred HHHHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcc
Q psy4179 24 IQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERT 78 (89)
Q Consensus 24 i~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~ 78 (89)
++-.|.+.+.....+++.+|-..+ -.+.+.+.+.+..|.+.|+|+|.
T Consensus 28 ~d~~IL~~L~~~~~~s~~eLA~~l--------glS~~tv~~rl~~L~~~G~I~~~ 74 (171)
T 2e1c_A 28 IDKKIIKILQNDGKAPLREISKIT--------GLAESTIHERIRKLRESGVIKKF 74 (171)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHH--------TSCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCeEee
Confidence 455788888888889998887654 36888999999999999999883
No 84
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=73.07 E-value=1.4 Score=28.14 Aligned_cols=29 Identities=17% Similarity=0.215 Sum_probs=23.6
Q ss_pred hcCCCCCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 51 ISLRFKPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 51 l~~~F~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
|...+-.+.+.+-..|..|.++|||.|..
T Consensus 52 La~~l~~~~~tvs~~v~~Le~~GlV~R~~ 80 (151)
T 4aik_A 52 LAKAIGIEQPSLVRTLDQLEEKGLITRHT 80 (151)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHCcCHHHHHHHHHHHHhCCCeEeec
Confidence 33445678899999999999999999853
No 85
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=72.92 E-value=12 Score=23.17 Aligned_cols=52 Identities=13% Similarity=0.171 Sum_probs=38.9
Q ss_pred HHHHHhhc-cccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcccC
Q psy4179 26 AAIVRIMK-MRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTET 80 (89)
Q Consensus 26 AaIVRiMK-~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~~ 80 (89)
.+|..++. +...++..+|...+.+.. ...+.+.+=+.++.|.+.|++.+-..
T Consensus 14 ~~Il~~l~~~~~~~sa~ei~~~l~~~~---~~is~~TVYR~L~~L~e~Glv~~~~~ 66 (131)
T 2o03_A 14 AAISTLLETLDDFRSAQELHDELRRRG---ENIGLTTVYRTLQSMASSGLVDTLHT 66 (131)
T ss_dssp HHHHHHHHHCCSCEEHHHHHHHHHHTT---CCCCHHHHHHHHHHHHTTTSEEEEEC
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhC---CCCCHhhHHHHHHHHHHCCCEEEEEe
Confidence 34444443 456799999998875542 34689999999999999999999653
No 86
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=72.50 E-value=4.3 Score=24.80 Aligned_cols=46 Identities=15% Similarity=0.257 Sum_probs=26.5
Q ss_pred HHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 26 AAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 26 AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
..|...+-....++..+|... +..+.+.+-..+..|.++|||.|..
T Consensus 40 ~~vL~~l~~~~~~t~~eLa~~--------l~~~~~tvs~~l~~L~~~Glv~r~~ 85 (142)
T 3ech_A 40 VHVLKLIDEQRGLNLQDLGRQ--------MCRDKALITRKIRELEGRNLVRRER 85 (142)
T ss_dssp HHHHHHHHHTTTCCHHHHHHH--------HC---CHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHHHhCCCcCHHHHHHH--------hCCCHHHHHHHHHHHHHCCCEeecc
Confidence 333444444444554444332 3456777889999999999999964
No 87
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=72.44 E-value=5.2 Score=25.16 Aligned_cols=47 Identities=13% Similarity=0.153 Sum_probs=37.2
Q ss_pred HHHHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcc
Q psy4179 24 IQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERT 78 (89)
Q Consensus 24 i~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~ 78 (89)
++..|...+.....+++.+|-..+ -.+.+.+...+..|.+.|||.|.
T Consensus 8 ~~~~iL~~L~~~~~~s~~ela~~l--------g~s~~tv~~~l~~L~~~G~i~~~ 54 (150)
T 2w25_A 8 IDRILVRELAADGRATLSELATRA--------GLSVSAVQSRVRRLESRGVVQGY 54 (150)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHH--------TSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEEE
Confidence 345677777777788888887654 35788899999999999999874
No 88
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=72.40 E-value=2.1 Score=26.96 Aligned_cols=27 Identities=11% Similarity=0.076 Sum_probs=23.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 53 LRFKPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 53 ~~F~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
..+..+.+.+-..|..|.++|||.|..
T Consensus 75 ~~l~~~~~~vs~~l~~Le~~Glv~r~~ 101 (161)
T 3e6m_A 75 TLGVMEQSTTSRTVDQLVDEGLAARSI 101 (161)
T ss_dssp HHTTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHCCCHHHHHHHHHHHHHCCCEEeeC
Confidence 345678899999999999999999964
No 89
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=72.15 E-value=15 Score=22.68 Aligned_cols=57 Identities=9% Similarity=0.018 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcc
Q psy4179 19 DRKLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERT 78 (89)
Q Consensus 19 dR~~~i~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~ 78 (89)
-++..++.+|..++. .+.++--+|...+.+. ..+.++...+=..+..|-+.|||.+.
T Consensus 7 l~~g~l~~~IL~lL~-~~p~~Gyei~~~l~~~--g~~~is~gtlY~~L~rLe~~GlI~~~ 63 (117)
T 4esf_A 7 MLKGSLEGCVLEIIS-RRETYGYEITRHLNDL--GFTEVVEGTVYTILVRLEKKKLVNIE 63 (117)
T ss_dssp HHHHHHHHHHHHHHH-HSCBCHHHHHHHHHHH--TCTTCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHChHHHHHHHHHH-cCCCCHHHHHHHHHHc--CCCCCCccHHHHHHHHHHHCCCEEEE
Confidence 456788999999887 4677888999888764 45679999999999999999999985
No 90
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=71.89 E-value=7.2 Score=23.77 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=20.6
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 55 FKPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 55 F~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
+..+.+.+-..|..|.++||+.|..
T Consensus 64 l~~~~~tvs~~l~~Le~~Glv~r~~ 88 (148)
T 3nrv_A 64 LGLDKAAVSRTVKKLEEKKYIEVNG 88 (148)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred HCCCHHHHHHHHHHHHHCCCEEeec
Confidence 4468889999999999999999863
No 91
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=71.83 E-value=12 Score=21.58 Aligned_cols=52 Identities=12% Similarity=0.236 Sum_probs=38.7
Q ss_pred HHHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcccCCCcce
Q psy4179 25 QAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTETHKDMY 85 (89)
Q Consensus 25 ~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~~~~~~y 85 (89)
...|+..+.. ..++..+|...+ ..+.+.+...+..|.+.|++.+..+....|
T Consensus 25 r~~Il~~L~~-~~~~~~ela~~l--------~is~~tvs~~L~~L~~~Glv~~~~~g~~~~ 76 (98)
T 3jth_A 25 RLQILCMLHN-QELSVGELCAKL--------QLSQSALSQHLAWLRRDGLVTTRKEAQTVY 76 (98)
T ss_dssp HHHHHHHTTT-SCEEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEECCTTCCE
T ss_pred HHHHHHHHhc-CCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCeEEEEeCCEEE
Confidence 4456777765 778877776554 357888999999999999998876554444
No 92
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=71.77 E-value=1.6 Score=27.08 Aligned_cols=29 Identities=28% Similarity=0.313 Sum_probs=18.6
Q ss_pred hcCCCCCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 51 ISLRFKPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 51 l~~~F~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
+...+..+.+.+-..+..|.++|||.|..
T Consensus 63 La~~l~~~~~~vs~~l~~L~~~Glv~r~~ 91 (148)
T 3jw4_A 63 LAQFFGRRGASITSMLQGLEKKGYIERRI 91 (148)
T ss_dssp HHHC------CHHHHHHHHHHTTSBCCC-
T ss_pred HHHHHCCChhHHHHHHHHHHHCCCEEeeC
Confidence 33455667788889999999999999964
No 93
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=71.75 E-value=8.9 Score=25.01 Aligned_cols=54 Identities=9% Similarity=0.218 Sum_probs=40.8
Q ss_pred HHHHHHhhcc-ccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 25 QAAIVRIMKM-RKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 25 ~AaIVRiMK~-~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
.-+|..++.. .+.++..+|...+..... ...++.+.|=++++.|.+.|.+.|-.
T Consensus 35 R~~IL~~L~~~~~h~sA~eI~~~l~~~~~-~~~is~aTVYRtL~~L~e~Glv~~i~ 89 (162)
T 4ets_A 35 REVLLKTLYHSDTHYTPESLYMEIKQAEP-DLNVGIATVYRTLNLLEEAEMVTSIS 89 (162)
T ss_dssp HHHHHHHHHSCCSCBCHHHHHHHHHHHCG-GGCCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhhcC-CCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 4455666544 578999999988876510 13468999999999999999999963
No 94
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=71.70 E-value=3.1 Score=24.92 Aligned_cols=43 Identities=12% Similarity=0.234 Sum_probs=32.2
Q ss_pred HHHhhccccccCcHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHHhhhhhccc
Q psy4179 28 IVRIMKMRKTLQHQQLVAEVLNQISLRFK-PRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 28 IVRiMK~~k~l~~~~L~~ev~~~l~~~F~-p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
|...+. ...+++.+|... +. .+.+.+-..+..|.+.|||.|..
T Consensus 30 IL~~L~-~~~~~~~eL~~~--------l~gis~~~ls~~L~~Le~~GlV~r~~ 73 (107)
T 2fsw_A 30 IIFQIN-RRIIRYGELKRA--------IPGISEKMLIDELKFLCGKGLIKKKQ 73 (107)
T ss_dssp HHHHHT-TSCEEHHHHHHH--------STTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHH-hCCcCHHHHHHH--------cccCCHHHHHHHHHHHHHCCCEEEee
Confidence 444444 566777777643 33 78999999999999999999953
No 95
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=71.52 E-value=7 Score=24.55 Aligned_cols=45 Identities=13% Similarity=0.206 Sum_probs=33.3
Q ss_pred HHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 27 AIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 27 aIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
.|...+. ...+++.+|...+ --.+.+.+-..+..|.+.|||.|..
T Consensus 39 ~IL~~L~-~g~~~~~eLa~~l-------~gis~~tls~~L~~Le~~GlV~r~~ 83 (131)
T 1yyv_A 39 LILVALR-DGTHRFSDLRRXM-------GGVSEXMLAQSLQALEQDGFLNRVS 83 (131)
T ss_dssp HHHHHGG-GCCEEHHHHHHHS-------TTCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHH-cCCCCHHHHHHHh-------ccCCHHHHHHHHHHHHHCCcEEEEe
Confidence 4455554 5678887776543 0268999999999999999999853
No 96
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=70.61 E-value=2 Score=27.58 Aligned_cols=26 Identities=15% Similarity=0.212 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 54 RFKPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 54 ~F~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
.+..+.+.+-..|..|.++|||.|..
T Consensus 77 ~l~i~~~tvs~~l~~Le~~GlV~r~~ 102 (166)
T 3deu_A 77 AIGIEQPSLVRTLDQLEDKGLISRQT 102 (166)
T ss_dssp HHTSCHHHHHHHHHHHHHTTSEEEC-
T ss_pred HHCCCHhhHHHHHHHHHHCCCEEeeC
Confidence 34578899999999999999999964
No 97
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=70.53 E-value=1.6 Score=27.53 Aligned_cols=55 Identities=11% Similarity=0.184 Sum_probs=36.3
Q ss_pred HHHHHHHhhccccccCcHHHH--HH---------HHHHhcCCCCCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 24 IQAAIVRIMKMRKTLQHQQLV--AE---------VLNQISLRFKPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 24 i~AaIVRiMK~~k~l~~~~L~--~e---------v~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
+.+.+-+.++.. -+++.++. .. ....|...+-.+.+.+-..|..|.++|||.|..
T Consensus 20 l~~~~~~~l~~~-gLt~~q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~ 85 (147)
T 4b8x_A 20 LLGEVDAVVKPY-GLTFARYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRP 85 (147)
T ss_dssp HHHHHHHHHGGG-TCCHHHHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEee
Confidence 445555666543 36666531 11 123344556678999999999999999999954
No 98
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=70.50 E-value=1.6 Score=27.40 Aligned_cols=26 Identities=19% Similarity=0.301 Sum_probs=22.3
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 54 RFKPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 54 ~F~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
.+..+.+.+-..|..|.++|||.|..
T Consensus 73 ~l~~~~~tvs~~l~~Le~~Glv~r~~ 98 (159)
T 3s2w_A 73 YLKIDKGTTARAIQKLVDEGYVFRQR 98 (159)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 44578899999999999999999854
No 99
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=70.25 E-value=5.9 Score=25.90 Aligned_cols=47 Identities=26% Similarity=0.333 Sum_probs=37.9
Q ss_pred HHHHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcc
Q psy4179 24 IQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERT 78 (89)
Q Consensus 24 i~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~ 78 (89)
++-.|.+.+.....+++.+|-..+ -.+.+.+...+..|.+.|+|.|.
T Consensus 18 ~d~~IL~~L~~~~~~s~~eLA~~l--------glS~~tv~~~l~~L~~~G~I~~~ 64 (171)
T 2ia0_A 18 LDRNILRLLKKDARLTISELSEQL--------KKPESTIHFRIKKLQERGVIERY 64 (171)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHH--------TSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEee
Confidence 344678888888889988887654 36788899999999999999873
No 100
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=70.24 E-value=7.8 Score=23.66 Aligned_cols=25 Identities=12% Similarity=0.248 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 55 FKPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 55 F~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
+..+.+.+-..+..|.++|||.|..
T Consensus 64 l~~~~~~vs~~l~~Le~~Glv~r~~ 88 (152)
T 3bj6_A 64 LQMKRQYISRILQEVQRAGLIERRT 88 (152)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HCCCHHHHHHHHHHHHHCCCeeecC
Confidence 4467888999999999999999954
No 101
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=69.79 E-value=2.4 Score=26.89 Aligned_cols=49 Identities=18% Similarity=0.245 Sum_probs=37.4
Q ss_pred cHHHHHHHHH-------HhcCCCCCCHHHHHHHHHHHHHhhhhhcccCCCcceeec
Q psy4179 40 HQQLVAEVLN-------QISLRFKPRVHVIKKCIDILIEKEYLERTETHKDMYHYL 88 (89)
Q Consensus 40 ~~~L~~ev~~-------~l~~~F~p~~~~iK~~IE~LIekeYl~R~~~~~~~y~Yi 88 (89)
|+.|..||-. .+..||..+.+.-+..|..|-++|.|..-..++...+|.
T Consensus 48 ~dkl~KEVpk~KlITpsvlseRlkI~gSLAR~aLreL~~kGlIk~V~kh~~q~IYT 103 (108)
T 3iz6_V 48 YDKLLSEVPKYKQITPSVLSERLRINGSLARQAIKDLESRGAIRVVSVHSSQLIYT 103 (108)
T ss_dssp HHHHHHHHHHHSSEEEHHHHHHHHTCCHHHHHHHHHHHHHHTSCEECCCTTSCCEE
T ss_pred HHHHHHHccCCeEEeHHHHHhhhcccHHHHHHHHHHHHHCCCEEEEecCCCEEEEe
Confidence 4455555543 355678888999999999999999999877666677774
No 102
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=69.75 E-value=1.9 Score=26.11 Aligned_cols=26 Identities=8% Similarity=-0.069 Sum_probs=22.6
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 54 RFKPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 54 ~F~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
.+..+.+.+-..+..|.++||+.|..
T Consensus 59 ~l~~s~~~vs~~l~~Le~~glv~r~~ 84 (142)
T 2fbi_A 59 QACILRPSMTGVLARLERDGIVRRWK 84 (142)
T ss_dssp HTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHCCCHhHHHHHHHHHHHCCCEEeec
Confidence 45678899999999999999999964
No 103
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=69.73 E-value=6.2 Score=23.89 Aligned_cols=46 Identities=15% Similarity=0.155 Sum_probs=31.1
Q ss_pred HHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 26 AAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 26 AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
..|...+.....++..+|... +..+.+.+-..+..|.++|||.|..
T Consensus 36 ~~iL~~l~~~~~~~~~~la~~--------l~~s~~tvs~~l~~L~~~glv~r~~ 81 (145)
T 2a61_A 36 FDILQKIYFEGPKRPGELSVL--------LGVAKSTVTGLVKRLEADGYLTRTP 81 (145)
T ss_dssp HHHHHHHHHHCCBCHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHcCCCCHHHHHHH--------HCCCchhHHHHHHHHHHCCCeeecC
Confidence 333444433445555555433 3467888999999999999999964
No 104
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=69.31 E-value=2.4 Score=25.97 Aligned_cols=26 Identities=12% Similarity=0.034 Sum_probs=22.4
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 54 RFKPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 54 ~F~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
.+..+.+.+-..|..|.++||+.|..
T Consensus 59 ~l~i~~~~vs~~l~~Le~~glv~r~~ 84 (147)
T 2hr3_A 59 AERMRSSNLAALLRELERGGLIVRHA 84 (147)
T ss_dssp HTTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HhCCChhhHHHHHHHHHHCCCEeeCC
Confidence 34578899999999999999999964
No 105
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=69.06 E-value=10 Score=23.19 Aligned_cols=56 Identities=13% Similarity=0.013 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhhccccccCcHHHHHHHHHHhcCCCC--CCH-HHHHHHHHHHHHhhhhhccc
Q psy4179 21 KLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFK--PRV-HVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 21 ~~~i~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~--p~~-~~iK~~IE~LIekeYl~R~~ 79 (89)
...++.+|..++.. +.++..+|...+.+ ...+. ++. ..+-..+..|-+.|||.+..
T Consensus 11 ~~~~~~~IL~~L~~-~~~~gyel~~~l~~--~g~~~~~is~~~tly~~L~~Le~~GlI~~~~ 69 (118)
T 2esh_A 11 GWWLASTILLLVAE-KPSHGYELAERLAE--FGIEIPGIGHMGNIYRVLADLEESGFLSTEW 69 (118)
T ss_dssp HHHHHHHHHHHHHH-SCBCHHHHHHHHHT--TCCSSTTCCCCCCHHHHHHHHHHTTSEEEEE
T ss_pred cchHHHHHHHHHHc-CCCCHHHHHHHHHH--hCCcccCCCCcchHHHHHHHHHHCCCeEEEe
Confidence 45678888888854 67888888888754 22233 888 99999999999999999863
No 106
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=68.98 E-value=6.2 Score=24.22 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=22.3
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 54 RFKPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 54 ~F~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
.+..+.+.+-..|..|.++|||.|..
T Consensus 60 ~l~~s~~tvs~~l~~Le~~glv~r~~ 85 (155)
T 1s3j_A 60 RMEVKPSAVTLMADRLEQKNLIARTH 85 (155)
T ss_dssp HHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHCCCHHHHHHHHHHHHHCCCEeecC
Confidence 34578899999999999999999864
No 107
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=68.49 E-value=1.5 Score=26.96 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=22.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 53 LRFKPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 53 ~~F~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
..+..+.+.+-..|..|.++||+.|..
T Consensus 58 ~~l~~~~~tvs~~l~~Le~~Glv~r~~ 84 (144)
T 3f3x_A 58 NRYFVTQSAITAAVDKLEAKGLVRRIR 84 (144)
T ss_dssp HHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHCCChhHHHHHHHHHHHCCCEEecc
Confidence 344578899999999999999999964
No 108
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=68.42 E-value=8.3 Score=23.62 Aligned_cols=52 Identities=10% Similarity=0.016 Sum_probs=34.8
Q ss_pred HHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcccCCCcce
Q psy4179 26 AAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTETHKDMY 85 (89)
Q Consensus 26 AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~~~~~~y 85 (89)
..|...+.....++..+|...+ ..+.+.+-..+..|.+.|++.+..+.+..|
T Consensus 45 l~IL~~L~~~~~~s~~eLa~~l--------~is~stvs~~L~~L~~~Glv~~~~~gr~~~ 96 (122)
T 1u2w_A 45 AKITYALCQDEELCVCDIANIL--------GVTIANASHHLRTLYKQGVVNFRKEGKLAL 96 (122)
T ss_dssp HHHHHHHHHSSCEEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEC----CCE
T ss_pred HHHHHHHHHCCCcCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCeEEEEECCEEE
Confidence 3466666656667777665443 357888999999999999998865444433
No 109
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=68.16 E-value=4.5 Score=25.07 Aligned_cols=26 Identities=12% Similarity=0.133 Sum_probs=20.6
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 54 RFKPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 54 ~F~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
.+..+.+.+-..+..|.++|||.|..
T Consensus 71 ~l~i~~~tvs~~l~~Le~~Gli~r~~ 96 (160)
T 3boq_A 71 ALKVTNGNVSGLVNRLIKDGMVVKAM 96 (160)
T ss_dssp HCSSCCSCHHHHHHHHHHHTSEEEC-
T ss_pred HHCCChhhHHHHHHHHHHCCCEEeec
Confidence 34456777888999999999999953
No 110
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=67.34 E-value=12 Score=22.98 Aligned_cols=54 Identities=11% Similarity=0.053 Sum_probs=44.5
Q ss_pred HHHHHHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcc
Q psy4179 22 LLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERT 78 (89)
Q Consensus 22 ~~i~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~ 78 (89)
..++.+|..++. .+.++--+|...+-+ ...+.++...+=..+..|-+.|||.+.
T Consensus 8 g~l~~~IL~~L~-~~~~~Gyei~~~l~~--~~~~~is~gtlY~~L~rLe~~GlI~~~ 61 (115)
T 4esb_A 8 GVLEGCILYIIS-QEEVYGYELSTKLNK--HGFTFVSEGSIYPLLLRMQKEKLIEGT 61 (115)
T ss_dssp TTHHHHHHHHHH-HSCEEHHHHHHHHHH--TTCTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHH-cCCCCHHHHHHHHHH--cCCCCCCcChHHHHHHHHHHCCCeEEE
Confidence 456778888886 567777899988876 445689999999999999999999985
No 111
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=66.87 E-value=1.7 Score=26.94 Aligned_cols=24 Identities=25% Similarity=0.123 Sum_probs=19.9
Q ss_pred CCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 56 KPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 56 ~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
..+.+.+-..|..|.++|||.|..
T Consensus 65 ~i~~~tvs~~l~~Le~~Glv~r~~ 88 (150)
T 3fm5_A 65 GLDPSQIVGLVDELEERGLVVRTL 88 (150)
T ss_dssp TCCHHHHHHHHHHHHTTTSEEC--
T ss_pred CCCHhHHHHHHHHHHHCCCEEeeC
Confidence 367888999999999999999953
No 112
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=66.43 E-value=2.8 Score=24.19 Aligned_cols=43 Identities=23% Similarity=0.411 Sum_probs=32.1
Q ss_pred HhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcccC
Q psy4179 30 RIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTET 80 (89)
Q Consensus 30 RiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~~ 80 (89)
.+......++..+|... +..+.+.+-+.+..|.++||+.|..+
T Consensus 29 ~l~~~~~~~t~~ela~~--------l~is~~tv~~~l~~L~~~g~v~~~~~ 71 (109)
T 2d1h_A 29 KMVEIEKPITSEELADI--------FKLSKTTVENSLKKLIELGLVVRTKT 71 (109)
T ss_dssp HHHHHCSCEEHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHcCCCCCHHHHHHH--------HCcCHHHHHHHHHHHHHCCCeEeecc
Confidence 33444566777777654 34678889999999999999999653
No 113
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=65.62 E-value=2.4 Score=27.79 Aligned_cols=27 Identities=11% Similarity=0.198 Sum_probs=22.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 53 LRFKPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 53 ~~F~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
..+-.+.+.+-..|..|.++|||.|..
T Consensus 65 ~~l~is~~tvs~~l~~Le~~GlV~r~~ 91 (189)
T 3nqo_A 65 RKMGTSKQNINRLVANLEKNGYVDVIP 91 (189)
T ss_dssp HHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHCCCEEecc
Confidence 344567889999999999999999953
No 114
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=65.50 E-value=18 Score=22.98 Aligned_cols=53 Identities=8% Similarity=0.027 Sum_probs=37.5
Q ss_pred HHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcc--cCCCcceee
Q psy4179 27 AIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERT--ETHKDMYHY 87 (89)
Q Consensus 27 aIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~--~~~~~~y~Y 87 (89)
.|.+.+. ...+++.+|...+ . -.+.+.+-..+..|-+.|+|.|. ++|+....|
T Consensus 30 ~IL~~L~-~g~~rf~eL~~~l----~---gIs~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y 84 (131)
T 4a5n_A 30 ILFYHMI-DGKKRFNEFRRIC----P---SITQRMLTLQLRELEADGIVHREVYHQVPPKVEY 84 (131)
T ss_dssp HHHHHHT-TSCBCHHHHHHHC----T---TSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEE
T ss_pred HHHHHHh-cCCcCHHHHHHHh----c---ccCHHHHHHHHHHHHHCCCEEEEecCCCCCeEEE
Confidence 4555555 6778888876543 0 36888999999999999999995 344444444
No 115
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=65.24 E-value=14 Score=21.34 Aligned_cols=45 Identities=13% Similarity=0.248 Sum_probs=33.6
Q ss_pred HHHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 25 QAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 25 ~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
+..|...+ ...++..+|...+ ..+.+.+.+.+..|.+.|+|.+..
T Consensus 33 r~~Il~~L--~~~~~~~eLa~~l--------~is~~tv~~~L~~L~~~Glv~~~~ 77 (96)
T 1y0u_A 33 RRKILRML--DKGRSEEEIMQTL--------SLSKKQLDYHLKVLEAGFCIERVG 77 (96)
T ss_dssp HHHHHHHH--HTTCCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHH--cCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEEEC
Confidence 34455666 4567777766443 478888999999999999999865
No 116
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=63.61 E-value=3.9 Score=27.38 Aligned_cols=30 Identities=20% Similarity=0.080 Sum_probs=24.7
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 50 QISLRFKPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 50 ~l~~~F~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
.|...+..+.+.+-..|..|.++|||.|..
T Consensus 67 eLa~~l~i~~stvs~~l~~Le~~GlV~r~~ 96 (207)
T 2fxa_A 67 EIAKFGVMHVSTAFNFSKKLEERGYLRFSK 96 (207)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 344456678999999999999999999954
No 117
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=63.03 E-value=18 Score=24.88 Aligned_cols=48 Identities=10% Similarity=0.307 Sum_probs=35.7
Q ss_pred HHHHHHHhhcccccc-CcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcccCC
Q psy4179 24 IQAAIVRIMKMRKTL-QHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTETH 81 (89)
Q Consensus 24 i~AaIVRiMK~~k~l-~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~~~ 81 (89)
|...|.- ++..-.+ +-.+|.. +|.++...+++++..|.+.|||.| .+.
T Consensus 23 l~~~I~~-~~~g~~lPse~~La~--------~~~vSr~tvr~Al~~L~~~G~i~~-~g~ 71 (248)
T 3f8m_A 23 LDRMLDG-MRIGDPFPAEREIAE--------QFEVARETVRQALRELLIDGRVER-RGR 71 (248)
T ss_dssp HHHHHHH-CCTTCBCCCHHHHHH--------HTTCCHHHHHHHHHHHHHTTSEEE-ETT
T ss_pred HHHHHhC-CCCCCcCcCHHHHHH--------HHCcCHHHHHHHHHHHHHCCCEEe-CCC
Confidence 3344444 6666666 5555543 588999999999999999999999 764
No 118
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=62.89 E-value=16 Score=21.59 Aligned_cols=51 Identities=4% Similarity=0.100 Sum_probs=35.1
Q ss_pred HHHHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcccCCCc
Q psy4179 24 IQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTETHKD 83 (89)
Q Consensus 24 i~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~~~~~ 83 (89)
....|...+. ...++..+|...+ ..+.+.+-+.+..|.+.|++.+..+.+.
T Consensus 27 ~r~~IL~~L~-~~~~~~~ela~~l--------~is~stvs~~L~~L~~~Glv~~~~~gr~ 77 (106)
T 1r1u_A 27 NRIRIMELLS-VSEASVGHISHQL--------NLSQSNVSHQLKLLKSVHLVKAKRQGQS 77 (106)
T ss_dssp HHHHHHHHHH-HCCBCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEEETTE
T ss_pred HHHHHHHHHH-hCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCeEEEEeCCE
Confidence 3445555555 5567777665443 3578889999999999999998654433
No 119
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=62.80 E-value=3.8 Score=26.16 Aligned_cols=50 Identities=12% Similarity=0.121 Sum_probs=35.6
Q ss_pred HHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhccc--CCCcceee
Q psy4179 28 IVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTE--THKDMYHY 87 (89)
Q Consensus 28 IVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~--~~~~~y~Y 87 (89)
|.+.+. ...+++.+|...+ -.+.+.+-..+..|.+.|||+|.. +|+ ...|
T Consensus 29 IL~~L~-~g~~~~~eLa~~l--------gis~~tls~~L~~Le~~GlI~r~~~~~d~-~~~y 80 (146)
T 2f2e_A 29 IVRDAF-EGLTRFGEFQKSL--------GLAKNILAARLRNLVEHGVMVAVPAESGS-HQEY 80 (146)
T ss_dssp HHHHHH-TTCCSHHHHHHHH--------CCCHHHHHHHHHHHHHTTSEEEEECSSSS-CEEE
T ss_pred HHHHHH-hCCCCHHHHHHHh--------CCCHHHHHHHHHHHHHCCCEEEEecCCCC-eEEE
Confidence 445443 4667887776543 367888999999999999999954 355 4444
No 120
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=62.61 E-value=7.6 Score=23.03 Aligned_cols=28 Identities=18% Similarity=0.393 Sum_probs=24.5
Q ss_pred hcCCCCCCHHHHHHHHHHHHHhhhhhcc
Q psy4179 51 ISLRFKPRVHVIKKCIDILIEKEYLERT 78 (89)
Q Consensus 51 l~~~F~p~~~~iK~~IE~LIekeYl~R~ 78 (89)
+...|..+.+.+.+.+..|.+.||+.+.
T Consensus 39 La~~lgvs~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 39 IANQLNIKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp HHHTTTSCHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 4446788999999999999999999886
No 121
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=62.53 E-value=4.2 Score=27.99 Aligned_cols=31 Identities=16% Similarity=0.378 Sum_probs=26.2
Q ss_pred hcCCCCCCHHHHHHHHHHHHHhhhhhcccCC
Q psy4179 51 ISLRFKPRVHVIKKCIDILIEKEYLERTETH 81 (89)
Q Consensus 51 l~~~F~p~~~~iK~~IE~LIekeYl~R~~~~ 81 (89)
|..+|.++...+++++..|.+.|||.|..+.
T Consensus 39 La~~~~vSr~tvr~Al~~L~~~G~i~~~~g~ 69 (236)
T 3edp_A 39 LQEIYSSSRTTIRRAVDLLVEEGLVVRKNGV 69 (236)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHTTSEEEETTT
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCEEEECCc
Confidence 3345888999999999999999999997653
No 122
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=61.88 E-value=8.2 Score=28.45 Aligned_cols=41 Identities=12% Similarity=0.173 Sum_probs=30.9
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHhhhhhcc--cCC-Ccceeec
Q psy4179 48 LNQISLRFKPRVHVIKKCIDILIEKEYLERT--ETH-KDMYHYL 88 (89)
Q Consensus 48 ~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~--~~~-~~~y~Yi 88 (89)
...|..+...+.+.+-..|..|.++|||.|. ++| +..+.|+
T Consensus 423 ~~~l~~~~~~~~~~~t~~~~~le~~g~v~r~~~~~D~R~~~i~l 466 (487)
T 1hsj_A 423 SKEIAKCSEFKPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYV 466 (487)
T ss_dssp HHHHHHSSCCCHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEEC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCCCCCCeEEEEE
Confidence 3455567888999999999999999999984 434 3455554
No 123
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=61.75 E-value=3.4 Score=24.87 Aligned_cols=51 Identities=8% Similarity=0.094 Sum_probs=35.3
Q ss_pred HHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcccCCCcce
Q psy4179 26 AAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTETHKDMY 85 (89)
Q Consensus 26 AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~~~~~~y 85 (89)
..|+..+.. ..++..+|... +..+.+.+...+..|.+.|++.+..+....|
T Consensus 28 ~~IL~~L~~-~~~s~~eLa~~--------lgis~stvs~~L~~L~~~GlV~~~~~gr~~~ 78 (108)
T 2kko_A 28 LQILDLLAQ-GERAVEAIATA--------TGMNLTTASANLQALKSGGLVEARREGTRQY 78 (108)
T ss_dssp HHHHHHHTT-CCEEHHHHHHH--------HTCCHHHHHHHHHHHHHHTSEEEEEETTEEE
T ss_pred HHHHHHHHc-CCcCHHHHHHH--------HCcCHHHHHHHHHHHHHCCCeEEEEeCCEEE
Confidence 445555653 56677666543 3367888999999999999998765444333
No 124
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=61.07 E-value=2.1 Score=27.22 Aligned_cols=26 Identities=31% Similarity=0.371 Sum_probs=19.8
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 54 RFKPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 54 ~F~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
.+..+.+.+-..|..|.++|||.|..
T Consensus 71 ~l~~~~~tvs~~l~~Le~~Glv~r~~ 96 (168)
T 3u2r_A 71 RLISRAPDITRLIDRLDDRGLVLRTR 96 (168)
T ss_dssp HC---CTHHHHHHHHHHHTTSEEEEE
T ss_pred HHCCChhhHHHHHHHHHHCCCEeecC
Confidence 35567778899999999999999954
No 125
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=60.23 E-value=19 Score=22.16 Aligned_cols=57 Identities=9% Similarity=0.021 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcc
Q psy4179 19 DRKLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERT 78 (89)
Q Consensus 19 dR~~~i~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~ 78 (89)
-++..++.+|..++. .+.+.--+|...+.+ ...+.++...+=..+..|-++|||.+.
T Consensus 9 l~~g~l~~~IL~lL~-~~p~~Gyei~~~l~~--~g~~~is~gtlY~~L~rLe~~GlI~~~ 65 (116)
T 3hhh_A 9 LLKGILEGLVLAIIQ-RKETYGYEITKILND--QGFTEIVEGTVYTILLRLEKNQWVIAE 65 (116)
T ss_dssp HHTTHHHHHHHHHHH-HSCBCHHHHHHHHHT--TSCSSCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhhhHHHHHHHHHh-cCCCCHHHHHHHHHH--cCCCCCCccHHHHHHHHHHHCCCEEEE
Confidence 345668889988887 456766789888866 445689999999999999999999985
No 126
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=59.65 E-value=5.2 Score=28.03 Aligned_cols=30 Identities=10% Similarity=0.195 Sum_probs=24.5
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 50 QISLRFKPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 50 ~l~~~F~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
.|..++..+.+.+-..|+.|.++||+.|..
T Consensus 179 eLa~~l~i~~~tvt~~v~rLe~~GlV~R~~ 208 (250)
T 1p4x_A 179 DLIETIHHKYPQTVRALNNLKKQGYLIKER 208 (250)
T ss_dssp HHHHHSSSCHHHHHHHHHHHHHHTSSEEEE
T ss_pred HHHHHHCCChhhHHHHHHHHHHCCCEEeeC
Confidence 344456678999999999999999999953
No 127
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=59.31 E-value=21 Score=21.20 Aligned_cols=24 Identities=13% Similarity=0.272 Sum_probs=21.7
Q ss_pred CCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 56 KPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 56 ~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
..+...+.+-++.|.++|||++..
T Consensus 31 ~ls~~~~~~~l~~L~~~GLI~~~~ 54 (95)
T 1r7j_A 31 NLSYALTGRYIKMLMDLEIIRQEG 54 (95)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CcCHHHHHHHHHHHHHCCCeEEEC
Confidence 478899999999999999999974
No 128
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=58.60 E-value=4.5 Score=25.15 Aligned_cols=28 Identities=7% Similarity=0.182 Sum_probs=24.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhhhhhcccC
Q psy4179 53 LRFKPRVHVIKKCIDILIEKEYLERTET 80 (89)
Q Consensus 53 ~~F~p~~~~iK~~IE~LIekeYl~R~~~ 80 (89)
..|-++...+.+++..|.+.|||.+.++
T Consensus 45 ~~~~vSr~tvr~Al~~L~~~G~i~~~~g 72 (125)
T 3neu_A 45 VKLAVNPNTVSRAYQELERAGYIYAKRG 72 (125)
T ss_dssp HHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHCcCHHHHHHHHHHHHHCCeEEEecC
Confidence 3466788999999999999999998765
No 129
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=57.23 E-value=4 Score=25.20 Aligned_cols=44 Identities=14% Similarity=0.202 Sum_probs=31.7
Q ss_pred HHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 28 IVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 28 IVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
|..+......++..+|... +..+.+.+.+.+..|.++|||.|..
T Consensus 13 i~~l~~~~~~~~~~ela~~--------l~vs~~tvs~~l~~Le~~Glv~r~~ 56 (142)
T 1on2_A 13 IYMLIEEKGYARVSDIAEA--------LAVHPSSVTKMVQKLDKDEYLIYEK 56 (142)
T ss_dssp HHHHHHHHSSCCHHHHHHH--------HTSCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHhhcCCCCHHHHHHH--------hCCCHHHHHHHHHHHHHCCCEEEee
Confidence 3444444556666655543 3467888999999999999999975
No 130
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=56.84 E-value=14 Score=22.37 Aligned_cols=50 Identities=12% Similarity=0.038 Sum_probs=34.7
Q ss_pred HHHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcccCCCc
Q psy4179 25 QAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTETHKD 83 (89)
Q Consensus 25 ~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~~~~~ 83 (89)
...|++.+. ...++..+|... +..+.+.+.+.+..|.+.||+.+..+.+.
T Consensus 23 r~~IL~~L~-~~~~~~~eLa~~--------lgis~stvs~~L~~L~~~GlV~~~~~gr~ 72 (118)
T 2jsc_A 23 RCRILVALL-DGVCYPGQLAAH--------LGLTRSNVSNHLSCLRGCGLVVATYEGRQ 72 (118)
T ss_dssp HHHHHHHHH-TTCCSTTTHHHH--------HSSCHHHHHHHHHHHTTTTSEEEEECSSS
T ss_pred HHHHHHHHH-cCCCCHHHHHHH--------HCcCHHHHHHHHHHHHHCCceEEEEECCE
Confidence 345566665 345677666543 23678889999999999999998654433
No 131
>1oef_A Apolipoprotein E; glycoprotein, plasma, lipid transport, HDL, VLDL, chylomicron, sialic acid, heparin-binding; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=56.37 E-value=9.5 Score=17.73 Aligned_cols=20 Identities=30% Similarity=0.375 Sum_probs=16.7
Q ss_pred CCCCCCHHHHHHHHHHHHHh
Q psy4179 53 LRFKPRVHVIKKCIDILIEK 72 (89)
Q Consensus 53 ~~F~p~~~~iK~~IE~LIek 72 (89)
++|.|-...||..++.+.++
T Consensus 1 ~~~~P~~e~ik~q~~~i~e~ 20 (26)
T 1oef_A 1 SWFEPLVEDMQRQWAGLVEK 20 (26)
T ss_dssp CCCTTHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHH
Confidence 36889999999999988764
No 132
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=56.04 E-value=4.1 Score=24.96 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=31.9
Q ss_pred HHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 28 IVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 28 IVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
|..+-.....++..+|... +..+.+.+.+.+..|.++||+.|..
T Consensus 22 l~~l~~~~~~~s~~ela~~--------l~is~~tv~~~l~~Le~~Gli~r~~ 65 (139)
T 2x4h_A 22 IKRYNDSGEGAKINRIAKD--------LKIAPSSVFEEVSHLEEKGLVKKKE 65 (139)
T ss_dssp HHHHHTTTSCBCHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHhcCCCcCHHHHHHH--------hCCChHHHHHHHHHHHHCCCEEecC
Confidence 4444445556676665543 3467888999999999999999975
No 133
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=55.74 E-value=23 Score=21.26 Aligned_cols=48 Identities=15% Similarity=0.113 Sum_probs=36.4
Q ss_pred HHHHHHHhhcccccc-CcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 24 IQAAIVRIMKMRKTL-QHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 24 i~AaIVRiMK~~k~l-~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
+...|+..++....+ +-.+|.. .|.++...+.+.+..|-+.|+|.+.+
T Consensus 29 i~~~I~~~l~~g~~lps~~eLa~--------~lgVSr~tVr~al~~L~~~GlI~~~~ 77 (102)
T 2b0l_A 29 AIEHIFEELDGNEGLLVASKIAD--------RVGITRSVIVNALRKLESAGVIESRS 77 (102)
T ss_dssp HHHHHTTSSBTTEEEECHHHHHH--------HHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHhhhcCCCcCCCHHHHHH--------HHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 355555666666555 6666553 47789999999999999999999876
No 134
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=55.60 E-value=4.5 Score=24.65 Aligned_cols=28 Identities=11% Similarity=0.275 Sum_probs=24.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhhhhhcccC
Q psy4179 53 LRFKPRVHVIKKCIDILIEKEYLERTET 80 (89)
Q Consensus 53 ~~F~p~~~~iK~~IE~LIekeYl~R~~~ 80 (89)
..|.++...+.+.+..|.+.|+|.+.++
T Consensus 41 ~~~~vSr~tvr~al~~L~~~Gli~~~~~ 68 (113)
T 3tqn_A 41 TEYQINPLTVSKAYQSLLDDNVIEKRRG 68 (113)
T ss_dssp HHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHCcCHHHHHHHHHHHHHCCCEEEecC
Confidence 4567888999999999999999998764
No 135
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=55.49 E-value=6.5 Score=26.94 Aligned_cols=28 Identities=18% Similarity=0.278 Sum_probs=25.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhhhhhcccC
Q psy4179 53 LRFKPRVHVIKKCIDILIEKEYLERTET 80 (89)
Q Consensus 53 ~~F~p~~~~iK~~IE~LIekeYl~R~~~ 80 (89)
.+|.++...+++++..|.+.|+|.|..+
T Consensus 37 ~~~~vSr~tvr~Al~~L~~~g~i~~~~g 64 (239)
T 3bwg_A 37 AQFEVSKSTITKSLELLEQKGAIFQVRG 64 (239)
T ss_dssp HHTTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHCCCHHHHHHHHHHHHHCCcEEEeCC
Confidence 3588999999999999999999999765
No 136
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=53.79 E-value=30 Score=19.97 Aligned_cols=52 Identities=12% Similarity=0.199 Sum_probs=35.3
Q ss_pred HHHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcccCCCcce
Q psy4179 25 QAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTETHKDMY 85 (89)
Q Consensus 25 ~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~~~~~~y 85 (89)
...|++.+. ...++..+|...+ ..+.+.+-..+..|.+.|++.+..+....|
T Consensus 25 r~~Il~~L~-~~~~~~~ela~~l--------~is~~tvs~~L~~L~~~Glv~~~~~g~~~~ 76 (102)
T 3pqk_A 25 RLMLVCTLV-EGEFSVGELEQQI--------GIGQPTLSQQLGVLRESGIVETRRNIKQIF 76 (102)
T ss_dssp HHHHHHHHH-TCCBCHHHHHHHH--------TCCTTHHHHHHHHHHHTTSEEEECSSSCCE
T ss_pred HHHHHHHHH-hCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCeEEEEeCCEEE
Confidence 345666664 3568888876554 245567889999999999998865444333
No 137
>2oxl_A Hypothetical protein YMGB; bacterial protein, biofilm, acid resistance, DNA binding Pro dimer, gene regulation; HET: BOG; 1.80A {Escherichia coli}
Probab=52.93 E-value=30 Score=19.67 Aligned_cols=51 Identities=12% Similarity=0.365 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhhccccccCcHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHH
Q psy4179 21 KLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKP-RVHVIKKCIDILIE 71 (89)
Q Consensus 21 ~~~i~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p-~~~~iK~~IE~LIe 71 (89)
...+.++++-||.+.+.++...++..++..|..--.+ ......+.+|.++.
T Consensus 7 ~e~Lg~iv~eil~~g~~vsnKaIi~~LI~rLE~~~d~~~~d~yR~lLe~v~~ 58 (64)
T 2oxl_A 7 SAVLGQAVTNLMLSGDNVNNKNIILSLIHSLETTSDILKADVIRKTLEIVLR 58 (64)
T ss_dssp HHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 3467889999999999999999999999999743222 23334555555543
No 138
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=52.84 E-value=13 Score=22.42 Aligned_cols=52 Identities=13% Similarity=0.184 Sum_probs=35.5
Q ss_pred HHHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcccCCCcce
Q psy4179 25 QAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTETHKDMY 85 (89)
Q Consensus 25 ~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~~~~~~y 85 (89)
...|+..+. ...++..+|. ..+..+.+.+-..+..|.+.|++.+..+.+..|
T Consensus 20 R~~Il~~L~-~~~~~~~eLa--------~~l~is~~tvs~hL~~L~~~GlV~~~~~gr~~~ 71 (118)
T 3f6o_A 20 RRAVLGRLS-RGPATVSELA--------KPFDMALPSFMKHIHFLEDSGWIRTHKQGRVRT 71 (118)
T ss_dssp HHHHHHHHH-TCCEEHHHHH--------TTCCSCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred HHHHHHHHH-hCCCCHHHHH--------HHhCcCHHHHHHHHHHHHHCCCeEEEecCCEEE
Confidence 344555554 3555555543 456788999999999999999998865444444
No 139
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=52.54 E-value=6.5 Score=24.52 Aligned_cols=27 Identities=11% Similarity=0.065 Sum_probs=23.8
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhhcccC
Q psy4179 54 RFKPRVHVIKKCIDILIEKEYLERTET 80 (89)
Q Consensus 54 ~F~p~~~~iK~~IE~LIekeYl~R~~~ 80 (89)
+|.++...+.+++..|...|+|.+.++
T Consensus 44 ~~~vSr~tvr~Al~~L~~~Gli~~~~g 70 (126)
T 3by6_A 44 QEKINPNTVAKAYKELEAQKVIRTIPG 70 (126)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHCcCHHHHHHHHHHHHHCCCEEEecC
Confidence 466789999999999999999998765
No 140
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=52.01 E-value=5.5 Score=28.07 Aligned_cols=29 Identities=10% Similarity=0.115 Sum_probs=24.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhhhhhcccCC
Q psy4179 53 LRFKPRVHVIKKCIDILIEKEYLERTETH 81 (89)
Q Consensus 53 ~~F~p~~~~iK~~IE~LIekeYl~R~~~~ 81 (89)
.+|.++...+++++..|.+.|||.|..+.
T Consensus 61 ~~~~vSr~tvr~Al~~L~~~G~i~~~~g~ 89 (272)
T 3eet_A 61 EEYGVSDTVALEARKVLMAEGLVEGRSGS 89 (272)
T ss_dssp HHHTCCHHHHHHHHHHHHHTTSEEECCC-
T ss_pred HHHCCCHHHHHHHHHHHHHCCCEEEecCc
Confidence 45777888999999999999999997653
No 141
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=51.97 E-value=40 Score=20.92 Aligned_cols=58 Identities=10% Similarity=0.088 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcc
Q psy4179 16 IEEDRKLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERT 78 (89)
Q Consensus 16 v~~dR~~~i~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~ 78 (89)
..+-++..+..+|..++. +.+.--+|...+.+. . |.++...+=..+..|-+.|||.+.
T Consensus 14 ~~~l~~g~l~~~IL~lL~--~p~~GYei~~~l~~~--~-~~is~gtlY~~L~rLe~~GlI~~~ 71 (123)
T 3ri2_A 14 VLELRRGTLVMLVLSQLR--EPAYGYALVKSLADH--G-IPIEANTLYPLMRRLESQGLLASE 71 (123)
T ss_dssp HHHHHHHHHHHHHHHHTT--SCEEHHHHHHHHHHT--T-CCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHhCcHHHHHHHHHc--CCCCHHHHHHHHHHh--C-CCCCcchHHHHHHHHHHCCCEEEE
Confidence 344577788999999998 667777888877654 2 899999999999999999999985
No 142
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain); lyase(carbon-carbon), lyase; HET: CAP; 2.20A {Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Probab=51.93 E-value=9.7 Score=24.03 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=17.2
Q ss_pred CHHHHHHHHHHHHHhhhhh
Q psy4179 58 RVHVIKKCIDILIEKEYLE 76 (89)
Q Consensus 58 ~~~~iK~~IE~LIekeYl~ 76 (89)
|...|.+.|++||.+||.=
T Consensus 21 t~eqI~kQI~Yll~qGw~p 39 (109)
T 1rbl_M 21 SDRQIAAQIEYMIEQGFHP 39 (109)
T ss_dssp CHHHHHHHHHHHHHHTCEE
T ss_pred CHHHHHHHHHHHHHCCCEE
Confidence 8899999999999999863
No 143
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Probab=50.67 E-value=5.9 Score=25.10 Aligned_cols=40 Identities=13% Similarity=0.128 Sum_probs=33.5
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHhhhhhcccCCCcceeec
Q psy4179 49 NQISLRFKPRVHVIKKCIDILIEKEYLERTETHKDMYHYL 88 (89)
Q Consensus 49 ~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~~~~~~y~Yi 88 (89)
..+..||..+.+.-+..|..|-++|.|..-..++...+|.
T Consensus 63 svlseRlkI~gSLAR~aLreL~~kGlIk~V~kh~~q~IYT 102 (108)
T 3u5c_Z 63 SVLVDRLKIGGSLARIALRHLEKEGIIKPISKHSKQAIYT 102 (108)
T ss_dssp HHHHHTTCCCTTHHHHHHHHHSSSSSCEEEECCSSCCEEE
T ss_pred HHhhhhhhhhHHHHHHHHHHHHHCCCEEEEecCCCEEEEe
Confidence 3456789999999999999999999999877777777774
No 144
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=50.65 E-value=25 Score=23.47 Aligned_cols=47 Identities=19% Similarity=0.234 Sum_probs=36.7
Q ss_pred HHHHHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcc
Q psy4179 23 LIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERT 78 (89)
Q Consensus 23 ~i~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~ 78 (89)
..+..|.+.+. ...++..+|...+ -.+.+.+...+..|.+.|+|.|.
T Consensus 20 ~~~~~IL~~L~-~~~~s~~eLA~~l--------glS~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 20 DTRRKILKLLR-NKEMTISQLSEIL--------GKTPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHHHHHHHHT-TCCBCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEEE
Confidence 34556677777 5678888877553 36788899999999999999986
No 145
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=50.56 E-value=37 Score=20.11 Aligned_cols=51 Identities=8% Similarity=0.093 Sum_probs=36.7
Q ss_pred HHHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcccCCCcc
Q psy4179 25 QAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTETHKDM 84 (89)
Q Consensus 25 ~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~~~~~~ 84 (89)
-..|..+++... ++..+|-. .+-.+...+.+.+..|-+.|+|.+..+.|..
T Consensus 19 ~~~IL~lL~~~g-~sa~eLAk--------~LgiSk~aVr~~L~~Le~eG~I~~~~~~PP~ 69 (82)
T 1oyi_A 19 VCEAIKTIGIEG-ATAAQLTR--------QLNMEKREVNKALYDLQRSAMVYSSDDIPPR 69 (82)
T ss_dssp HHHHHHHHSSST-EEHHHHHH--------HSSSCHHHHHHHHHHHHHHTSSEECSSSSCE
T ss_pred HHHHHHHHHHcC-CCHHHHHH--------HHCcCHHHHHHHHHHHHHCCCEEeCCCCCCc
Confidence 344566677544 65555443 3557889999999999999999998776543
No 146
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=50.44 E-value=15 Score=22.09 Aligned_cols=48 Identities=13% Similarity=0.236 Sum_probs=33.9
Q ss_pred HHHHhhccccccC--cHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHhhhhhcccCCCcc
Q psy4179 27 AIVRIMKMRKTLQ--HQQLVAEVLNQISLRF-KPRVHVIKKCIDILIEKEYLERTETHKDM 84 (89)
Q Consensus 27 aIVRiMK~~k~l~--~~~L~~ev~~~l~~~F-~p~~~~iK~~IE~LIekeYl~R~~~~~~~ 84 (89)
.|.+.+. ...++ +.+|.. .+ -.+.+.+-+.+..|-+.|+|.|..+ +..
T Consensus 31 ~IL~~L~-~g~~~~~~~eL~~--------~l~gis~~~ls~~L~~Le~~GlV~r~~~-r~~ 81 (111)
T 3df8_A 31 LIISVLG-NGSTRQNFNDIRS--------SIPGISSTILSRRIKDLIDSGLVERRSG-QIT 81 (111)
T ss_dssp HHHHHHT-SSSSCBCHHHHHH--------TSTTCCHHHHHHHHHHHHHTTSEEEEES-SSE
T ss_pred HHHHHHh-cCCCCCCHHHHHH--------HccCCCHHHHHHHHHHHHHCCCEEEeec-CcE
Confidence 3444454 34444 777654 35 4789999999999999999999765 443
No 147
>3zxw_B Ribulose bisphosphate carboxylase small chain; CO2/O2 specificity, carbon dioxide fixation, photosynthesis, thermostability; HET: KCX CAP; 2.10A {Thermosynechococcus elongatus} PDB: 2ybv_B*
Probab=49.94 E-value=11 Score=24.18 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=16.6
Q ss_pred CHHHHHHHHHHHHHhhhh
Q psy4179 58 RVHVIKKCIDILIEKEYL 75 (89)
Q Consensus 58 ~~~~iK~~IE~LIekeYl 75 (89)
|...|.+.|++||.+||.
T Consensus 20 t~eqI~kQV~yll~qGw~ 37 (118)
T 3zxw_B 20 SDAQIARQIQYAIDQGYH 37 (118)
T ss_dssp CHHHHHHHHHHHHHHTCE
T ss_pred CHHHHHHHHHHHHhCCCe
Confidence 788899999999999986
No 148
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=49.79 E-value=22 Score=21.97 Aligned_cols=46 Identities=13% Similarity=0.161 Sum_probs=35.4
Q ss_pred HHHHHHhhccccccCcHHHHHHHHHHhcCCC--CCCHHHHHHHHHHHHHhhhhhcc
Q psy4179 25 QAAIVRIMKMRKTLQHQQLVAEVLNQISLRF--KPRVHVIKKCIDILIEKEYLERT 78 (89)
Q Consensus 25 ~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F--~p~~~~iK~~IE~LIekeYl~R~ 78 (89)
+-.|...++....++..+|- ..+ ..+.+.+.+.+..|-+.|+|++.
T Consensus 15 d~~IL~~L~~~g~~s~~eLA--------~~l~~giS~~aVs~rL~~Le~~GLV~~~ 62 (111)
T 3b73_A 15 DDRILEIIHEEGNGSPKELE--------DRDEIRISKSSVSRRLKKLADHDLLQPL 62 (111)
T ss_dssp HHHHHHHHHHHSCBCHHHHH--------TSTTCCSCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHcCCCCHHHHH--------HHHhcCCCHHHHHHHHHHHHHCCCEEec
Confidence 44566666666667766554 356 78999999999999999999985
No 149
>3c18_A Nucleotidyltransferase-like protein; ZP_00538802.1, structur genomics, joint center for structural genomics, JCSG; 1.90A {Exiguobacterium sibiricum}
Probab=49.76 E-value=24 Score=25.84 Aligned_cols=67 Identities=15% Similarity=0.207 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcccc-ccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcc---cCCCccee
Q psy4179 14 KHIEEDRKLLIQAAIVRIMKMRK-TLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERT---ETHKDMYH 86 (89)
Q Consensus 14 ~~v~~dR~~~i~AaIVRiMK~~k-~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~---~~~~~~y~ 86 (89)
+.....+....-+-+.++|+.+. ..|.+||.+.- .|.+=.-++-.-++.|++|++|++. .+++..|+
T Consensus 213 Ef~I~sk~~~~~~~Ll~~m~ek~~~wS~~Ei~~~p------~~~~~~idle~iL~~Lv~k~lI~~~~~~tk~~~~~~ 283 (290)
T 3c18_A 213 EHLLQSKVLSGGKYLFEVMRERDRPWTMHELMEES------RLTELKVDLGSLVDFFIRKGLIRISYQRTKGLGVEL 283 (290)
T ss_dssp HHHHHHTHHHHHHHHHHHHTTSSSCEEHHHHHHCG------GGGGGHHHHHHHHHHHHHTTSEEEEEEECTTSSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHhcCc------ccccccCCHHHHHHHHHHcCCeEEecccCCCCcEEE
Confidence 33445566666788999999999 79999887542 3555566677789999999999985 33445553
No 150
>1wj5_A Hypothetical protein (riken cDNA 0610009H20); winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.4.5.59
Probab=48.65 E-value=13 Score=23.95 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHhhhhhcccCCCc
Q psy4179 59 VHVIKKCIDILIEKEYLERTETHKD 83 (89)
Q Consensus 59 ~~~iK~~IE~LIekeYl~R~~~~~~ 83 (89)
-.+||.+|..|+++||+-.-.+..+
T Consensus 77 ~sifKeAi~~Lqe~G~VfqK~~~~d 101 (120)
T 1wj5_A 77 QRVFKNALQLLQEKGLVFQRDSGSD 101 (120)
T ss_dssp HHHHHHHHHHHHHHTSEECSSCSSS
T ss_pred HHHHHHHHHHHHHCCEEEeccCCcc
Confidence 5789999999999999876543333
No 151
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=48.63 E-value=9.9 Score=26.54 Aligned_cols=41 Identities=12% Similarity=0.346 Sum_probs=29.3
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHhhhhhcc--cCC-Ccceeec
Q psy4179 48 LNQISLRFKPRVHVIKKCIDILIEKEYLERT--ETH-KDMYHYL 88 (89)
Q Consensus 48 ~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~--~~~-~~~y~Yi 88 (89)
...|..++..+.+.+-..|..|.++|||.|. ++| +..+.|+
T Consensus 53 ~~el~~~l~~~~~t~t~~l~rLe~~G~i~R~~~~~DrR~~~i~L 96 (250)
T 1p4x_A 53 FKKIVSDLCYKQSDLVQHIKVLVKHSYISKVRSKIDERNTYISI 96 (250)
T ss_dssp HHHHHHHSSSCGGGTHHHHHHHHHTTSCEEEECSSSTTSEEEEC
T ss_pred HHHHHHHHCCCHhhHHHHHHHHHHCCCEEecCCCCCCCeEEEEE
Confidence 3445556667788889999999999999884 444 3455554
No 152
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=48.54 E-value=7.4 Score=26.77 Aligned_cols=28 Identities=14% Similarity=0.280 Sum_probs=24.4
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhhcccCC
Q psy4179 54 RFKPRVHVIKKCIDILIEKEYLERTETH 81 (89)
Q Consensus 54 ~F~p~~~~iK~~IE~LIekeYl~R~~~~ 81 (89)
+|.++...+++++..|.+.|||.|..+.
T Consensus 43 ~~~vSr~tvr~Al~~L~~~G~i~~~~g~ 70 (243)
T 2wv0_A 43 QFGISRMTVRQALSNLVNEGLLYRLKGR 70 (243)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEEECTTS
T ss_pred HHCcCHHHHHHHHHHHHHCCcEEEeCCC
Confidence 4778889999999999999999997653
No 153
>1svd_M Ribulose bisphosphate carboxylase small chain; beta-alpha-barrel, lyase; 1.80A {Halothiobacillus neapolitanus} SCOP: d.73.1.1
Probab=47.67 E-value=11 Score=23.73 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHHHHhhhhh
Q psy4179 58 RVHVIKKCIDILIEKEYLE 76 (89)
Q Consensus 58 ~~~~iK~~IE~LIekeYl~ 76 (89)
|...|.+.|++||.+||.=
T Consensus 23 t~eqI~kQV~Yll~qGw~p 41 (110)
T 1svd_M 23 NAERIRAQIKYAIAQGWSP 41 (110)
T ss_dssp CHHHHHHHHHHHHHTTCEE
T ss_pred CHHHHHHHHHHHHHCCCee
Confidence 7899999999999999863
No 154
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=46.74 E-value=9.5 Score=23.93 Aligned_cols=30 Identities=10% Similarity=0.176 Sum_probs=25.7
Q ss_pred hcCCCCCCHHHHHHHHHHHHHhhhhhcccC
Q psy4179 51 ISLRFKPRVHVIKKCIDILIEKEYLERTET 80 (89)
Q Consensus 51 l~~~F~p~~~~iK~~IE~LIekeYl~R~~~ 80 (89)
|..+|.++..-+.+++..|...|+|.+.++
T Consensus 34 La~~~gvSr~tVr~Al~~L~~~Gli~~~~g 63 (129)
T 2ek5_A 34 LAAFHRINPATARNGLTLLVEAGILYKKRG 63 (129)
T ss_dssp HHHHTTCCHHHHHHHHHHHHTTTSEEEETT
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCcEEEecC
Confidence 334588999999999999999999998765
No 155
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=45.98 E-value=8.5 Score=23.94 Aligned_cols=31 Identities=6% Similarity=0.116 Sum_probs=25.3
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHhhhhhcccC
Q psy4179 50 QISLRFKPRVHVIKKCIDILIEKEYLERTET 80 (89)
Q Consensus 50 ~l~~~F~p~~~~iK~~IE~LIekeYl~R~~~ 80 (89)
.|...|-++..-+.+++..|.+.|||.+.++
T Consensus 40 ~La~~~~vSr~tvr~Al~~L~~~G~i~~~~~ 70 (126)
T 3ic7_A 40 EYASIVEVNANTVMRSYEYLQSQEVIYNKRG 70 (126)
T ss_dssp TTTTCC-CCSGGGHHHHHHHHTTTSEEEETT
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCcEEEEcC
Confidence 3445677888999999999999999998765
No 156
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=44.48 E-value=9.1 Score=25.94 Aligned_cols=27 Identities=7% Similarity=0.128 Sum_probs=23.1
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhhcccC
Q psy4179 54 RFKPRVHVIKKCIDILIEKEYLERTET 80 (89)
Q Consensus 54 ~F~p~~~~iK~~IE~LIekeYl~R~~~ 80 (89)
++..+.+.+...+..|.++||+.|.++
T Consensus 33 ~l~vs~~tvs~~l~~Le~~GlV~r~~~ 59 (230)
T 1fx7_A 33 RLDQSGPTVSQTVSRMERDGLLRVAGD 59 (230)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEEECTT
T ss_pred HHCcCHHHHHHHHHHHHHCCCEEEeCC
Confidence 345688889999999999999999764
No 157
>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae}
Probab=44.43 E-value=18 Score=26.96 Aligned_cols=34 Identities=9% Similarity=0.314 Sum_probs=29.1
Q ss_pred HHHHHHHHhhccccccCcHHHHHHHHHHhcCCCC
Q psy4179 23 LIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFK 56 (89)
Q Consensus 23 ~i~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~ 56 (89)
..--|.+++|+....++|.+|++.+...|+.+|.
T Consensus 298 AmTyafi~aL~~~p~~tY~~Ll~~~r~~L~~kys 331 (350)
T 4f6o_A 298 AMSHAFIKVMTLQPQQSYLSLLQNMRKELAGKYS 331 (350)
T ss_dssp HHHHHHHHHHHHCCCCBHHHHHHHHHHHHTTTCS
T ss_pred hhHHHHHHHHHHCCCCCHHHHHHHHHHHHHhcCC
Confidence 4445678999999999999999999999987774
No 158
>2rqp_A Heterochromatin protein 1-binding protein 3; histone H1, alternative splicing, chromosomal protein, DNA-binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=44.25 E-value=28 Score=20.55 Aligned_cols=53 Identities=8% Similarity=0.140 Sum_probs=29.5
Q ss_pred HHHHHHHhhccccccCcHHHHHHHHHHhcCCC--CCCHHHHHHHHHHHHHhhhhhcc
Q psy4179 24 IQAAIVRIMKMRKTLQHQQLVAEVLNQISLRF--KPRVHVIKKCIDILIEKEYLERT 78 (89)
Q Consensus 24 i~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F--~p~~~~iK~~IE~LIekeYl~R~ 78 (89)
|-.||.. +|.++-.+..-+...+...-.. + ......++..+..++++|-|.+-
T Consensus 16 I~eAI~~-Lker~GsS~~AI~KyI~~~y~~-~~~~~~~~~lk~aLk~~v~~G~l~q~ 70 (88)
T 2rqp_A 16 LTEAIKA-CFQKSGASVVAIRKYIIHKYPS-LELERRGYLLKQALKRELNRGVIKQV 70 (88)
T ss_dssp HHHHHHH-HHHHTCCCHHHHHHHHHHHCST-HHHHTTTTTHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHH-hccCCCcCHHHHHHHHHHhCCC-CChhhHHHHHHHHHHHHHhcCcEEee
Confidence 4444433 4666666666665555443110 0 01234678888888888877663
No 159
>3mhs_B Protein SUS1; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3fwc_C 3fwb_C 3kjl_A 3m99_C 3mhh_B 3kik_A 4fip_B 4fjc_B 4fk5_B
Probab=44.18 E-value=49 Score=20.08 Aligned_cols=50 Identities=14% Similarity=0.193 Sum_probs=34.3
Q ss_pred HHHHHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhh
Q psy4179 23 LIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLE 76 (89)
Q Consensus 23 ~i~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~ 76 (89)
.+.+.+-.+++.+..+++.+|+.+|...-....| ..+|+.+-.-| +.||.
T Consensus 41 evr~~~r~~i~~~~~vt~~~L~~~I~P~Ar~~VP---~~VK~Ell~~I-r~fL~ 90 (96)
T 3mhs_B 41 KVKDLTKSEMNINESTNFTQILSTVEPKALEMVS---DSTRETVLKQI-REFLE 90 (96)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTSC---HHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHCC---HHHHHHHHHHH-HHHHH
Confidence 4555666677777899999999999999876543 33455555545 44553
No 160
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=44.14 E-value=11 Score=23.55 Aligned_cols=28 Identities=14% Similarity=0.127 Sum_probs=24.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhhhhhcccC
Q psy4179 53 LRFKPRVHVIKKCIDILIEKEYLERTET 80 (89)
Q Consensus 53 ~~F~p~~~~iK~~IE~LIekeYl~R~~~ 80 (89)
..|-++..-+++++..|-..|||.+.++
T Consensus 46 ~~~gVSr~tVReAl~~L~~eGlv~~~~g 73 (134)
T 4ham_A 46 SRIGVNPNTVSKAYQELERQEVIITVKG 73 (134)
T ss_dssp HHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHCCCHHHHHHHHHHHHHCCcEEEEcC
Confidence 4577889999999999999999988764
No 161
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=43.83 E-value=55 Score=20.12 Aligned_cols=47 Identities=13% Similarity=0.133 Sum_probs=31.8
Q ss_pred HHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcccC
Q psy4179 26 AAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTET 80 (89)
Q Consensus 26 AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~~ 80 (89)
..|...+.....++..+|.. .|..+.+.+.+.|..|.++||+.|..+
T Consensus 43 ~~i~~~l~~~~~~~~~~la~--------~l~vs~~tvs~~l~~Le~~Glv~r~~~ 89 (155)
T 2h09_A 43 ELISDLIREVGEARQVDMAA--------RLGVSQPTVAKMLKRLATMGLIEMIPW 89 (155)
T ss_dssp HHHHHHHHHHSCCCHHHHHH--------HHTSCHHHHHHHHHHHHHTTCEEEETT
T ss_pred HHHHHHHHhCCCcCHHHHHH--------HhCcCHHHHHHHHHHHHHCCCEEEecC
Confidence 33444444445555444432 355788999999999999999999753
No 162
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_8
Probab=43.76 E-value=5.2 Score=26.56 Aligned_cols=39 Identities=8% Similarity=0.287 Sum_probs=31.9
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHhhhhhcccCCCcceeec
Q psy4179 50 QISLRFKPRVHVIKKCIDILIEKEYLERTETHKDMYHYL 88 (89)
Q Consensus 50 ~l~~~F~p~~~~iK~~IE~LIekeYl~R~~~~~~~y~Yi 88 (89)
.|..||..+.+.-++.|..|-++|-|..-..+....+|.
T Consensus 68 vlseRlkI~gSLARkaLreL~~kGlIk~V~kh~~q~IYT 106 (143)
T 2xzm_8 68 TVVEKLKVNGSLARQLMRTMADRKLVEKVAKNGNQWVYS 106 (143)
T ss_dssp HHHHHHCBCHHHHHHHHHHHHHTTSEEEEEEETTEEEEE
T ss_pred HHHHHhcchHHHHHHHHHHHHHCCCEEEEecCCCeEEEe
Confidence 345678899999999999999999998866666677774
No 163
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=43.50 E-value=76 Score=24.40 Aligned_cols=60 Identities=12% Similarity=0.127 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhhccccccCcHHHHHHHHHHhcCC----CCCCHHHHHHHHHHHHHhhhhhcccC
Q psy4179 21 KLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLR----FKPRVHVIKKCIDILIEKEYLERTET 80 (89)
Q Consensus 21 ~~~i~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~----F~p~~~~iK~~IE~LIekeYl~R~~~ 80 (89)
-...-|.|+--.=....++..+|+..+.+.+... =.++...+..++..|++.+||.|.+.
T Consensus 99 ~G~~a~~I~~~ll~~G~~t~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~fI~rv~~ 162 (534)
T 2xub_A 99 YSDTGELIVEELLLNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS 162 (534)
T ss_dssp HHHHHHHHHHHHHHHCCBCHHHHHHHHHHHHHHTSSSSCCCCHHHHHHHHHHHHHTTSEEECCC
T ss_pred hcHHHHHHHHHHHHcCCccHHHHHHHHHhhcccccccccccCHHHHHHHHHHHHhCCCEEeCCC
Confidence 3344567777777788999999998888765321 23678999999999999999999763
No 164
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=41.51 E-value=71 Score=23.19 Aligned_cols=57 Identities=19% Similarity=0.241 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHH-hhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcccCC
Q psy4179 19 DRKLLIQAAIVR-IMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTETH 81 (89)
Q Consensus 19 dR~~~i~AaIVR-iMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~~~ 81 (89)
+|...|=.+||. ..+....++-.+|... + .+.+|...|+.-+..|=+.|||.|-.+.
T Consensus 17 eR~~~IL~~i~~~yl~~~~pV~s~~La~~----~--~l~VS~aTIRrDL~~LE~~GlL~r~Hgs 74 (338)
T 1stz_A 17 DRQRKVLYCIVREYIENKKPVSSQRVLEV----S--NIEFSSATIRNDMKKLEYLGYIYQPHTS 74 (338)
T ss_dssp HHHHHHHHHHHHHHHHHCSCBCHHHHHHH----S--CCCSCHHHHHHHHHHHHHTTSEECCSSC
T ss_pred HHHHHHHHHHHHHHHHcCCCccHHHHHHH----h--CCCCCHHHHHHHHHHHHHCCCEEEccCc
Confidence 555555555554 4777788887777643 1 1388999999999999999999996654
No 165
>2kep_A General secretion pathway protein G; methylation, transport, transport protein; NMR {Pseudomonas aeruginosa}
Probab=40.42 E-value=15 Score=22.85 Aligned_cols=32 Identities=19% Similarity=0.530 Sum_probs=23.7
Q ss_pred CCCCCCHHHHHHHHHHHHH-------------hhhhhcccCCC--cceeec
Q psy4179 53 LRFKPRVHVIKKCIDILIE-------------KEYLERTETHK--DMYHYL 88 (89)
Q Consensus 53 ~~F~p~~~~iK~~IE~LIe-------------keYl~R~~~~~--~~y~Yi 88 (89)
.+|+-+.. .++.|++ .+||++.+.|| +.|.|+
T Consensus 31 G~YPtt~q----gL~aLv~~P~~~~~~~~w~~g~YL~~~P~DPWg~~Y~Y~ 77 (110)
T 2kep_A 31 FAYPSTQQ----GLEALVKKPTGNPQPKNWNKDGYLKKLPVDPWGNPYQYL 77 (110)
T ss_dssp SSCCCTTH----HHHHHHSCCSSCCCSSCCCSTTTCCSCCCCSTTCCCEEE
T ss_pred CCCCCcHH----HHHHHHhCcCCCcccccccCCCCccccCCCCCCCceEEe
Confidence 45654443 5789998 68999988887 678886
No 166
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=40.19 E-value=56 Score=21.90 Aligned_cols=47 Identities=15% Similarity=0.203 Sum_probs=36.2
Q ss_pred HHHHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 24 IQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 24 i~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
....|...+ ....++..+|...+ ..+.+.+-..+..|.+.|+|.+..
T Consensus 16 ~rl~IL~~L-~~~~~s~~eLa~~l--------~is~stvs~hLk~Le~~GLV~~~~ 62 (202)
T 2p4w_A 16 TRRRILFLL-TKRPYFVSELSREL--------GVGQKAVLEHLRILEEAGLIESRV 62 (202)
T ss_dssp HHHHHHHHH-HHSCEEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHH-HhCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCceEEEe
Confidence 344566666 35678888877665 378899999999999999999854
No 167
>1i7d_A DNA topoisomerase III; decatenating enzyme, protein-DNA complex, single-stranded DNA, isomerase/DNA complex; HET: DNA; 2.05A {Escherichia coli} SCOP: e.10.1.1 PDB: 2o5c_A* 2o54_A* 2o59_A* 2o19_A* 2o5e_A* 1d6m_A*
Probab=40.04 E-value=44 Score=26.79 Aligned_cols=51 Identities=16% Similarity=0.237 Sum_probs=32.1
Q ss_pred HHHHHHhhccc-cccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcc
Q psy4179 25 QAAIVRIMKMR-KTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERT 78 (89)
Q Consensus 25 ~AaIVRiMK~~-k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~ 78 (89)
+|.+++.|..- |.+.-.+|- ++...-..-..|+ .-=.-|+.|++++|+.+.
T Consensus 493 EasLi~~Me~~~k~v~d~e~~-~~lk~~~GIGtpA--TrA~iIe~L~~R~Yv~~~ 544 (659)
T 1i7d_A 493 DATLLSAMTGIARFVQDKDLK-KILRATDGLGTEA--TRAGIIELLFKRGFLTKK 544 (659)
T ss_dssp HHHHHHHHHTGGGGCCCHHHH-HHHHHTTSSSCTT--THHHHHHHHHHTTSEEES
T ss_pred HHHHHHHHHHhccccCCHHHH-HHHhhccCCCccc--cHHHHHHHHHhCCcEeec
Confidence 67888888864 444444433 2222222345554 346679999999999986
No 168
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=39.89 E-value=64 Score=20.95 Aligned_cols=45 Identities=29% Similarity=0.348 Sum_probs=34.8
Q ss_pred HHHHHhhccc-cccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhh-hhcc
Q psy4179 26 AAIVRIMKMR-KTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEY-LERT 78 (89)
Q Consensus 26 AaIVRiMK~~-k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeY-l~R~ 78 (89)
-.|..+++.. +.++..+|... |.++...|.+.|..|-+.|+ |.+.
T Consensus 24 ~~Il~~L~~~~~~~s~~eLa~~--------l~vS~~Ti~rdi~~L~~~G~~I~~~ 70 (187)
T 1j5y_A 24 KSIVRILERSKEPVSGAQLAEE--------LSVSRQVIVQDIAYLRSLGYNIVAT 70 (187)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHH--------HTSCHHHHHHHHHHHHHHTCCCEEE
T ss_pred HHHHHHHHHcCCCcCHHHHHHH--------HCcCHHHHHHHHHHHHHCCCeEEEE
Confidence 3466677654 55888887765 45899999999999999999 8763
No 169
>1bxn_I Rubisco, protein (ribulose bisphosphate carboxylase small; lyase (carbon-carbon), lyase; 2.70A {Cupriavidus necator} SCOP: d.73.1.1
Probab=39.17 E-value=21 Score=23.45 Aligned_cols=18 Identities=11% Similarity=0.211 Sum_probs=16.7
Q ss_pred CHHHHHHHHHHHHHhhhh
Q psy4179 58 RVHVIKKCIDILIEKEYL 75 (89)
Q Consensus 58 ~~~~iK~~IE~LIekeYl 75 (89)
|...|.+.|++||.+||.
T Consensus 15 tdeqI~kQI~YlL~qGw~ 32 (139)
T 1bxn_I 15 TDEQITKQLEYCLNQGWA 32 (139)
T ss_dssp CHHHHHHHHHHHHHHTCE
T ss_pred CHHHHHHHHHHHHHCCCe
Confidence 789999999999999985
No 170
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=39.12 E-value=53 Score=18.65 Aligned_cols=20 Identities=5% Similarity=-0.011 Sum_probs=16.6
Q ss_pred CCCCCCHHHHHHHHHHHHHh
Q psy4179 53 LRFKPRVHVIKKCIDILIEK 72 (89)
Q Consensus 53 ~~F~p~~~~iK~~IE~LIek 72 (89)
+|=+.+..+|..+++.|+-+
T Consensus 54 ~rKTI~~~dI~~A~~~ll~k 73 (76)
T 3b0c_W 54 KSKIIKPEHTIAAAKVILKK 73 (76)
T ss_dssp TCSSBCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 67788999999999988743
No 171
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=38.90 E-value=5.8 Score=25.46 Aligned_cols=26 Identities=27% Similarity=0.143 Sum_probs=21.4
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 54 RFKPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 54 ~F~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
.+..+.+.+-..|..|.++|||.|..
T Consensus 95 ~l~is~~tvs~~l~~Le~~GlV~r~~ 120 (181)
T 2fbk_A 95 LAAISGPSTSNRIVRLLEKGLIERRE 120 (181)
T ss_dssp HCSCCSGGGSSHHHHHHHHTSEECCC
T ss_pred HHCCCHHHHHHHHHHHHHCcCEEecC
Confidence 34567777888999999999999964
No 172
>2co5_A Viral protein F93; viral protein-winged helix complex, winged helix, DNA-bindin WHTH, disulfide bond, STIV; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=38.86 E-value=50 Score=19.76 Aligned_cols=42 Identities=26% Similarity=0.392 Sum_probs=34.5
Q ss_pred cccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 36 KTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 36 k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
..+.-.+++.++.+.. .|.++...+=..+..|-+.|||.+..
T Consensus 23 ~~~~g~~i~~ei~~~~--~~~is~GtlYp~L~rLe~~GlI~~~~ 64 (99)
T 2co5_A 23 SRLEKKRLRSEILKRF--DIDISDGVLYPLIDSLIDDKILREEE 64 (99)
T ss_dssp TEEEGGGHHHHHHHHH--CCBCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCCcHHHHHHHHHHHh--CCCCCCCcHHHHHHHHHHCCCEEEee
Confidence 3455578888887765 37899999999999999999999865
No 173
>2e1n_A PEX, period extender; circadian clock, DNA binding protein, circadian clock protei; 1.80A {Synechococcus elongatus pcc 7942}
Probab=38.20 E-value=47 Score=21.07 Aligned_cols=52 Identities=6% Similarity=0.179 Sum_probs=41.0
Q ss_pred HHHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcc
Q psy4179 25 QAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERT 78 (89)
Q Consensus 25 ~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~ 78 (89)
...|..++.. +.+.--+|...+.+.. ..|.++...+-..+..|-+.|||.+.
T Consensus 36 ~~~IL~lL~~-~~~~Gyei~k~l~~~~-~~~~is~gtLYp~L~rLe~~GlI~~~ 87 (138)
T 2e1n_A 36 VCYVLAVLRH-EDSYGTELIQHLETHW-PNYRLSDTVLYTALKFLEDEQIISGY 87 (138)
T ss_dssp HHHHHHHHTT-SCEEHHHHHHHHHHHS-TTEECCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHh-CCCcHHHHHHHHHHHc-CCCCCCccHHHHHHHHHHHCCCEEEE
Confidence 3456666653 6677778888776654 56789999999999999999999885
No 174
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=37.91 E-value=12 Score=25.22 Aligned_cols=45 Identities=7% Similarity=0.214 Sum_probs=31.9
Q ss_pred HHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcccC
Q psy4179 28 IVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTET 80 (89)
Q Consensus 28 IVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~~ 80 (89)
|-.+......++-.+|-. ++..+.+.+.+.+..|.++||+.|..+
T Consensus 11 I~~l~~~~~~~~~~~lA~--------~l~vs~~tvs~~l~~Le~~GlV~r~~~ 55 (214)
T 3hrs_A 11 LYELGTRHNKITNKEIAQ--------LMQVSPPAVTEMMKKLLAEELLIKDKK 55 (214)
T ss_dssp HHHTTSSCSCCCHHHHHH--------HHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHhcCCCcCHHHHHH--------HHCCChhHHHHHHHHHHHCCCEEEecC
Confidence 344444555566555443 345788889999999999999999753
No 175
>1gk8_I Ribulose bisphosphate carboxylase small chain 1; lyase, rubisco, photosynthesis; HET: KCX CAP; 1.4A {Chlamydomonas reinhardtii} SCOP: d.73.1.1 PDB: 2v63_I* 2v67_I* 2v68_I* 2v69_I* 2v6a_I* 2vdh_I* 2vdi_I* 1uw9_C* 1uwa_C* 1ir2_I* 1uzd_C* 1uzh_C*
Probab=37.59 E-value=20 Score=23.63 Aligned_cols=18 Identities=11% Similarity=0.307 Sum_probs=16.5
Q ss_pred CHHHHHHHHHHHHHhhhh
Q psy4179 58 RVHVIKKCIDILIEKEYL 75 (89)
Q Consensus 58 ~~~~iK~~IE~LIekeYl 75 (89)
|...|.+.|++||.+||.
T Consensus 22 t~eqI~kQI~YlL~qGw~ 39 (140)
T 1gk8_I 22 TDEQIAAQVDYIVANGWI 39 (140)
T ss_dssp CHHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHHCCCE
Confidence 788999999999999975
No 176
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=37.58 E-value=82 Score=20.37 Aligned_cols=58 Identities=14% Similarity=0.208 Sum_probs=43.0
Q ss_pred HHHHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcccCCCcceeec
Q psy4179 24 IQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTETHKDMYHYL 88 (89)
Q Consensus 24 i~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~~~~~~y~Yi 88 (89)
-++.|..+.+.++..+-.||.....+. -|.+|.+.|.+-|..| +.++--. ....|.|.
T Consensus 6 R~~~I~~li~~~~~~tq~eL~~~L~~~---G~~VtqaTisRDL~eL---~~vKv~~-~~g~~~Y~ 63 (149)
T 1b4a_A 6 RHIKIREIIMSNDIETQDELVDRLREA---GFNVTQATVSRDIKEM---QLVKVPM-ANGRYKYS 63 (149)
T ss_dssp HHHHHHHHHHHSCCCSHHHHHHHHHHT---TCCCCHHHHHHHHHHT---TCEEEEC-SSSCEEEE
T ss_pred HHHHHHHHHHHCCCccHHHHHHHHHHc---CCCcCHHHHHHHHHHc---CCeEEEC-CCCCEEEE
Confidence 467889999999999999999876544 5899999998877665 5554322 22457774
No 177
>1wdd_S Ribulose bisphosphate carboxylase small chain C; rubisco, photosynthesis, alpha/beta barrel, N-methylmethioni translational modification, lyase; HET: KCX CAP; 1.35A {Oryza sativa} SCOP: d.73.1.1 PDB: 3axm_S* 3axk_S* 8ruc_I* 1aus_S 1rbo_S* 1rco_S* 1rcx_S* 1rxo_S* 1upm_C* 1upp_I* 1aa1_S* 3rub_S 1rlc_S* 1rld_S 1ej7_S 1ir1_S* 4rub_S*
Probab=37.39 E-value=20 Score=23.21 Aligned_cols=18 Identities=22% Similarity=0.420 Sum_probs=16.5
Q ss_pred CHHHHHHHHHHHHHhhhh
Q psy4179 58 RVHVIKKCIDILIEKEYL 75 (89)
Q Consensus 58 ~~~~iK~~IE~LIekeYl 75 (89)
|...|.+.|++||.+||.
T Consensus 22 t~eqI~kQI~Yll~qGw~ 39 (128)
T 1wdd_S 22 TVEDLLKQIEYLLRSKWV 39 (128)
T ss_dssp CHHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHHCCCe
Confidence 789999999999999975
No 178
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=37.38 E-value=14 Score=25.06 Aligned_cols=26 Identities=4% Similarity=0.087 Sum_probs=22.4
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 54 RFKPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 54 ~F~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
++..+.+.+-..|..|.++||+.|..
T Consensus 33 ~l~vs~~tvs~~l~~Le~~GlV~r~~ 58 (226)
T 2qq9_A 33 RLEQSGPTVSQTVARMERDGLVVVAS 58 (226)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEEECT
T ss_pred HHCCCHHHHHHHHHHHHHCCCEEEeC
Confidence 44568888999999999999999975
No 179
>1bwv_S Rubisco, protein (ribulose bisphosphate carboxylase); carbon dioxide fixation, complex (rubisco-reaction intermedi high specificity factor; HET: KCX CAP; 2.40A {Galdieria partita} SCOP: d.73.1.1 PDB: 1iwa_B
Probab=37.35 E-value=20 Score=23.52 Aligned_cols=18 Identities=39% Similarity=0.409 Sum_probs=16.7
Q ss_pred CHHHHHHHHHHHHHhhhh
Q psy4179 58 RVHVIKKCIDILIEKEYL 75 (89)
Q Consensus 58 ~~~~iK~~IE~LIekeYl 75 (89)
|...|.+.|++||.+||.
T Consensus 15 tdeqI~kQI~Yll~qGw~ 32 (138)
T 1bwv_S 15 TDEQIKKQIDYMISKKLA 32 (138)
T ss_dssp CHHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHHCCCe
Confidence 789999999999999985
No 180
>4dhx_B Enhancer of yellow 2 transcription factor homolog, 80 kDa MCM3-associated protein; mRNA export, transport protein-DNA binding protein complex; 2.10A {Homo sapiens}
Probab=36.41 E-value=51 Score=20.19 Aligned_cols=51 Identities=20% Similarity=0.241 Sum_probs=35.2
Q ss_pred HHHHHHHHhhcccc--ccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhc
Q psy4179 23 LIQAAIVRIMKMRK--TLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLER 77 (89)
Q Consensus 23 ~i~AaIVRiMK~~k--~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R 77 (89)
.+...+-.+++.+. .+++.+|+.+|...-....| ..+|+.+-.-| +.||..
T Consensus 45 evr~~~r~~i~~~g~~~vt~~~L~~~I~P~Ar~~VP---~~VK~Ell~rI-r~fL~~ 97 (101)
T 4dhx_B 45 QLKAHCKEVIKEKGLEHVTVDDLVAEITPKGRALVP---DSVKKELLQRI-RTFLAQ 97 (101)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHSC---HHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHhHHHHHHCC---HHHHHHHHHHH-HHHHHH
Confidence 45566667777764 79999999999998875443 34566665555 556654
No 181
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=36.32 E-value=19 Score=21.95 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=19.2
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhhc
Q psy4179 54 RFKPRVHVIKKCIDILIEKEYLER 77 (89)
Q Consensus 54 ~F~p~~~~iK~~IE~LIekeYl~R 77 (89)
....+.+.+-.+++.|+.+||++-
T Consensus 40 ~l~~drstvsrnl~~L~r~GlVe~ 63 (95)
T 1bja_A 40 HPDLGNAVVNSNIGVLIKKGLVEK 63 (95)
T ss_dssp CTTSCHHHHHHHHHHHHTTTSEEE
T ss_pred HhcccHHHHHHHHHHHHHCCCeec
Confidence 344567777889999999999983
No 182
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=36.09 E-value=17 Score=18.12 Aligned_cols=40 Identities=13% Similarity=0.091 Sum_probs=21.9
Q ss_pred hccccccCcH-HHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q psy4179 32 MKMRKTLQHQ-QLVAEVLNQISLRFKPRVHVIKKCIDILIE 71 (89)
Q Consensus 32 MK~~k~l~~~-~L~~ev~~~l~~~F~p~~~~iK~~IE~LIe 71 (89)
||.+-+++.. +|+..+-...+....+....|..+|+..++
T Consensus 1 Mk~ritv~l~~~l~~~Ld~~a~~~g~srS~~ir~ai~~~l~ 41 (45)
T 2cpg_A 1 MKKRLTITLSESVLENLEKMAREMGLSKSAMISVALENYKK 41 (45)
T ss_dssp CEEEEEEEEEHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCceEEEecCHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 4444444444 455555554444455666777777765543
No 183
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=35.81 E-value=43 Score=23.20 Aligned_cols=47 Identities=11% Similarity=0.080 Sum_probs=33.8
Q ss_pred HHHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 25 QAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 25 ~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
+..|...+.....++..+|...+ -.+.+.+-+.+..|.++||+.|..
T Consensus 154 ~~~IL~~L~~~~~~s~~eLA~~l--------glsksTv~r~L~~Le~~GlV~r~~ 200 (244)
T 2wte_A 154 EMKLLNVLYETKGTGITELAKML--------DKSEKTLINKIAELKKFGILTQKG 200 (244)
T ss_dssp HHHHHHHHHHHTCBCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEEeC
Confidence 44455555555667766665443 367788999999999999999973
No 184
>3g20_A Type II secretion protein; general secretory pathway, major pilin, protein transport; HET: NHE; 1.78A {Escherichia coli O157} SCOP: d.24.1.3
Probab=35.74 E-value=46 Score=20.85 Aligned_cols=32 Identities=22% Similarity=0.403 Sum_probs=23.4
Q ss_pred CCCCCCHHHHHHHHHHHHHh-------------hhhhcccCCC--cceeec
Q psy4179 53 LRFKPRVHVIKKCIDILIEK-------------EYLERTETHK--DMYHYL 88 (89)
Q Consensus 53 ~~F~p~~~~iK~~IE~LIek-------------eYl~R~~~~~--~~y~Yi 88 (89)
.+|+.+.. .++.|+++ .||+|-+.|| +.|+|.
T Consensus 42 g~YP~t~q----gL~aLv~~p~~~~~p~~w~~g~Yl~~~P~DPwg~~y~Y~ 88 (123)
T 3g20_A 42 NRYPTTEQ----GLRALVSKPTVQPEPRNYRQDGYIRRLPQDPWGGDYQLL 88 (123)
T ss_dssp SSCCCTTT----TGGGGTSCCSSSSCCTTCCTTCSCSCCCBCTTSCBCEEE
T ss_pred CCCCCCHH----HHHHHHhCcCCCcccccccCCCcccCCCCCCCCCCeEEe
Confidence 57776643 46788875 5999987776 688886
No 185
>1uss_A Histone H1; DNA binding protein, linker histone, DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13 PDB: 1yqa_A
Probab=35.11 E-value=54 Score=19.30 Aligned_cols=55 Identities=15% Similarity=0.083 Sum_probs=32.8
Q ss_pred HHHHHHHHhhccccccCcHHHHHHHHHHhcCC-CC-CC-HHHHHHHHHHHHHhhhhhcc
Q psy4179 23 LIQAAIVRIMKMRKTLQHQQLVAEVLNQISLR-FK-PR-VHVIKKCIDILIEKEYLERT 78 (89)
Q Consensus 23 ~i~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~-F~-p~-~~~iK~~IE~LIekeYl~R~ 78 (89)
.|-.||. -+|.++-.+.+-+...+...-.-- .. +. ...++..+..|+++|-|.+-
T Consensus 13 MI~eAI~-alker~GsS~~AIkKyI~~~y~~~~~~~~~~~~~lk~aLK~~v~~G~lvq~ 70 (88)
T 1uss_A 13 MILKSMP-QLNDGKGSSRIVLKKYVKDTFSSKLKTSSNFDYLFNSAIKKCVENGELVQP 70 (88)
T ss_dssp HHHHHHH-HSCCTTSBCHHHHHHHHHHHTTTTSCCSSTHHHHHHHHHHHHHHHSSEECS
T ss_pred HHHHHHH-HhccCCCcCHHHHHHHHHHhCCCcccchHhHHHHHHHHHHHHHHcCCEEec
Confidence 3445543 467777777777766665442100 11 12 45688888888888877654
No 186
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=34.41 E-value=77 Score=19.12 Aligned_cols=49 Identities=10% Similarity=0.154 Sum_probs=39.5
Q ss_pred HHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcc
Q psy4179 28 IVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERT 78 (89)
Q Consensus 28 IVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~ 78 (89)
|..++.. +.+.--+|...+-+.. ..+.++...+=..+..|-+.|||.+.
T Consensus 27 IL~lL~~-~~~~Gyei~~~l~~~~-~~~~is~gtLY~~L~rLe~~GlI~~~ 75 (115)
T 2dql_A 27 ILYVLLQ-GESYGTELIQQLETEH-PTYRLSDTVLYSAIKFLEDNRAITGY 75 (115)
T ss_dssp HHHHHTT-SCBCHHHHHHHHHHHC-TTEECCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHh-CCCCHHHHHHHHHHHc-CCCCCCcchHHHHHHHHHHCCCEEEE
Confidence 6666653 6677778888876654 56789999999999999999999985
No 187
>1uhm_A Histone H1, histone HHO1P; winged helix-turn-helix, linker histone, riken structural genomics/proteomics initiative, RSGI; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13
Probab=34.04 E-value=42 Score=19.26 Aligned_cols=51 Identities=18% Similarity=0.144 Sum_probs=33.6
Q ss_pred HHHHHHHHhhccccccCcHHHHHHHHHHhcCCCCC------CHHHHHHHHHHHHHhhhhhcc
Q psy4179 23 LIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKP------RVHVIKKCIDILIEKEYLERT 78 (89)
Q Consensus 23 ~i~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p------~~~~iK~~IE~LIekeYl~R~ 78 (89)
.|-.||. -+|.++-.+..-+...+.. .|.+ -...++..+..++++|-|.+-
T Consensus 10 MI~eAI~-~lker~GsS~~AIkKyI~~----~y~~~~~~~~~~~~l~~aLk~~v~~G~l~q~ 66 (78)
T 1uhm_A 10 LIIEGLT-ALKERKGSSRPALKKFIKE----NYPIVGSASNFDLYFNNAIKKGVEAGDFEQP 66 (78)
T ss_dssp HHHHHHH-HHCCSSCEEHHHHHHHHHT----TSCTTTSSSTHHHHHHHHHHHHHHTTSEECC
T ss_pred HHHHHHH-HhccCCCcCHHHHHHHHHH----HCCCCCchHHHHHHHHHHHHHHHHcCCEEec
Confidence 4455544 3677777777776655543 3432 246789999999999987763
No 188
>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=33.44 E-value=58 Score=21.52 Aligned_cols=33 Identities=3% Similarity=-0.011 Sum_probs=29.2
Q ss_pred hcCCCCCCHHHHHHHHHHHHHhhhhhcccCCCc
Q psy4179 51 ISLRFKPRVHVIKKCIDILIEKEYLERTETHKD 83 (89)
Q Consensus 51 l~~~F~p~~~~iK~~IE~LIekeYl~R~~~~~~ 83 (89)
+...|.-+....+..++.++..|.+=||+....
T Consensus 126 la~~~~ws~~~a~e~L~~~e~~G~l~~D~~~~G 158 (169)
T 1u5t_B 126 NNSKSNWTLGILMEVLQNCVDEGDLLIDKQLSG 158 (169)
T ss_dssp SCTTCCCCHHHHHHHHHHHHHHTSEEEEECSSC
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCEEEECCCCc
Confidence 788899999999999999999999999965433
No 189
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=33.39 E-value=5.1 Score=23.71 Aligned_cols=27 Identities=7% Similarity=0.268 Sum_probs=23.6
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhhcccC
Q psy4179 54 RFKPRVHVIKKCIDILIEKEYLERTET 80 (89)
Q Consensus 54 ~F~p~~~~iK~~IE~LIekeYl~R~~~ 80 (89)
.|..+...+.+.+..|-+.|||.+..+
T Consensus 44 ~~~vSr~tvr~al~~L~~~Gli~~~~g 70 (102)
T 1v4r_A 44 QFGVAAKTVSRALAVLKSEGLVSSRGA 70 (102)
T ss_dssp HSSSCTTHHHHHTTTTTTSSCCEEETT
T ss_pred HHCcCHHHHHHHHHHHHHCCCEEEeCC
Confidence 477888999999999999999988764
No 190
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=33.35 E-value=70 Score=23.04 Aligned_cols=45 Identities=13% Similarity=0.179 Sum_probs=37.4
Q ss_pred HHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcc
Q psy4179 26 AAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERT 78 (89)
Q Consensus 26 AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~ 78 (89)
..|.+.+..+..++-.+|... .-.+.+.+...++.|++.+++...
T Consensus 19 ~~il~~l~~~~~~sr~~la~~--------~~ls~~tv~~~v~~L~~~g~i~~~ 63 (406)
T 1z6r_A 19 GAVYRLIDQLGPVSRIDLSRL--------AQLAPASITKIVHEMLEAHLVQEL 63 (406)
T ss_dssp HHHHHHHHSSCSCCHHHHHHH--------TTCCHHHHHHHHHHHHHHTSEEEC
T ss_pred HHHHHHHHHcCCcCHHHHHHH--------HCCCHHHHHHHHHHHHHCCcEEee
Confidence 457788888889999888754 457899999999999999999874
No 191
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=32.93 E-value=18 Score=22.60 Aligned_cols=29 Identities=3% Similarity=0.224 Sum_probs=22.7
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHhhhhhc
Q psy4179 49 NQISLRFKPRVHVIKKCIDILIEKEYLER 77 (89)
Q Consensus 49 ~~l~~~F~p~~~~iK~~IE~LIekeYl~R 77 (89)
..|..+.-.+.+.+-..|..|..+||+++
T Consensus 56 ~eLa~~l~~~~~tvsr~v~~Le~~glVr~ 84 (148)
T 4fx0_A 56 SELAARIGVERTTLTRNLEVMRRDGLVRV 84 (148)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSBC-
T ss_pred HHHHHHHCCChhhHHHHHHHHHHCCCEEe
Confidence 34445566788999999999999999955
No 192
>3rhi_A DNA-binding protein HU; structural genomics, center for structural genom infectious diseases, csgid; 2.48A {Bacillus anthracis} SCOP: a.55.1.1 PDB: 1hue_A 1huu_A
Probab=32.69 E-value=61 Score=18.91 Aligned_cols=38 Identities=11% Similarity=0.214 Sum_probs=24.3
Q ss_pred cccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHh--hhhhc
Q psy4179 36 KTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEK--EYLER 77 (89)
Q Consensus 36 k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIek--eYl~R 77 (89)
++|+-.||+..+.+... .+..+++..++.|++- +.|..
T Consensus 2 ~~mtk~eLi~~ia~~~~----lsk~~~~~~v~~~~~~i~~~L~~ 41 (93)
T 3rhi_A 2 NAMNKTELIKNVAQNAE----ISQKEATVVVQTVVESITNTLAA 41 (93)
T ss_dssp -----CHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CccCHHHHHHHHHHHhC----cCHHHHHHHHHHHHHHHHHHHhC
Confidence 46788899999987762 4788888888888763 34443
No 193
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=32.52 E-value=38 Score=21.61 Aligned_cols=54 Identities=13% Similarity=0.221 Sum_probs=37.9
Q ss_pred HHHHHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcccCCCcce
Q psy4179 23 LIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTETHKDMY 85 (89)
Q Consensus 23 ~i~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~~~~~~y 85 (89)
.....|++.+. ...++..+|. ..+..+.+.+-.-+..|.+.|+|.+..+....|
T Consensus 58 p~R~~IL~~L~-~~~~t~~eLa--------~~lgls~stvs~hL~~L~~aGlV~~~~~Gr~~~ 111 (151)
T 3f6v_A 58 PTRRRLVQLLT-SGEQTVNNLA--------AHFPASRSAISQHLRVLTEAGLVTPRKDGRFRY 111 (151)
T ss_dssp HHHHHHHHHGG-GCCEEHHHHH--------TTSSSCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred HHHHHHHHHHH-hCCCCHHHHH--------HHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEE
Confidence 34556777776 5566655444 456688999999999999999998765444333
No 194
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=32.44 E-value=15 Score=24.46 Aligned_cols=29 Identities=7% Similarity=0.087 Sum_probs=24.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhhhhhcccCC
Q psy4179 53 LRFKPRVHVIKKCIDILIEKEYLERTETH 81 (89)
Q Consensus 53 ~~F~p~~~~iK~~IE~LIekeYl~R~~~~ 81 (89)
.+|-++..-+++++..|...|+|.+.++.
T Consensus 39 ~~~gVSR~tVReAL~~L~~eGlv~~~~g~ 67 (239)
T 1hw1_A 39 ELIGVTRTTLREVLQRLARDGWLTIQHGK 67 (239)
T ss_dssp HHHTCCHHHHHHHHHHHHHTTSEEEETTE
T ss_pred HHHCCCHHHHHHHHHHHHHCCcEEEecCC
Confidence 35778899999999999999999987653
No 195
>2ra5_A Putative transcriptional regulator; beta structure, UTRA domain, structural genomics, PSI-2, protein structure initiative; HET: SRT; 2.40A {Streptomyces coelicolor A3} SCOP: d.190.1.2
Probab=32.33 E-value=7.2 Score=26.91 Aligned_cols=31 Identities=19% Similarity=0.360 Sum_probs=6.0
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHhhhhhcccC
Q psy4179 50 QISLRFKPRVHVIKKCIDILIEKEYLERTET 80 (89)
Q Consensus 50 ~l~~~F~p~~~~iK~~IE~LIekeYl~R~~~ 80 (89)
.|..+|.++...+++++..|.+.|||.|..+
T Consensus 45 ~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g 75 (247)
T 2ra5_A 45 ELAARLGLSRPTVRQAIQSLVDKGLLVRRRG 75 (247)
T ss_dssp -----------------------CEEEEEC-
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCCEEEEcC
Confidence 4556788899999999999999999998764
No 196
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=32.11 E-value=96 Score=24.02 Aligned_cols=60 Identities=13% Similarity=0.062 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHhh-cc-----ccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 16 IEEDRKLLIQAAIVRIM-KM-----RKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 16 v~~dR~~~i~AaIVRiM-K~-----~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
+..+-...|.|+|+-++ .. +--+...+|+..+...|. .+...+..+|+.|++.+-+-..+
T Consensus 66 ~~~~~~~R~~a~~~~~l~~~~~~~Ght~~~~~~l~~~~~~~l~----~~~~~~~~~~~~~~~~~~~~~~~ 131 (574)
T 3e1s_A 66 GALDDPRRLTAAAVYALQLAGTQAGHSFLPRSRAEKGVVHYTR----VTPGQARLAVETAVELGRLSEDD 131 (574)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHTCCSCEEHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHTSSEEEC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCEeecHHHHHHHHHHHhC----CCHHHHHHHHHHHHhCCCEEEEe
Confidence 34455567889998888 32 233667789999988884 57788999999999998776543
No 197
>4f0h_B Ribulose bisphosphate carboxylase small chain; alpha beta domain, catalytic domain TIM barrel, carboxylase/oxygenase, nitrosylation; 1.96A {Galdieria sulphuraria} PDB: 4f0k_B 4f0m_B 1iwa_B 1bwv_S*
Probab=32.01 E-value=30 Score=22.71 Aligned_cols=19 Identities=37% Similarity=0.340 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHHHHhhhhh
Q psy4179 58 RVHVIKKCIDILIEKEYLE 76 (89)
Q Consensus 58 ~~~~iK~~IE~LIekeYl~ 76 (89)
|...|.+.|++||.+||.=
T Consensus 15 td~qI~kQI~YlL~qGw~~ 33 (138)
T 4f0h_B 15 TDEQIKKQIDYMISKKLAI 33 (138)
T ss_dssp CHHHHHHHHHHHHHTTCEE
T ss_pred CHHHHHHHHHHHHhCCCEE
Confidence 7889999999999999863
No 198
>2np2_A HBB; protein-DNA complex, DNA-binding protein, DNA-bending protein, dnabii family, HU/IHF family, DNA binding protein/DNA complex; 3.02A {Borrelia burgdorferi}
Probab=31.95 E-value=79 Score=18.97 Aligned_cols=36 Identities=19% Similarity=0.296 Sum_probs=26.2
Q ss_pred cccCcHHHHHHHHHHhc-CCCCCCHHHHHHHHHHHHH
Q psy4179 36 KTLQHQQLVAEVLNQIS-LRFKPRVHVIKKCIDILIE 71 (89)
Q Consensus 36 k~l~~~~L~~ev~~~l~-~~F~p~~~~iK~~IE~LIe 71 (89)
.+|+-.||+..+...++ .+-..+..+++..++.|++
T Consensus 7 ~~mtk~eLi~~ia~~~~~~~~~lsk~~~~~vl~~~~~ 43 (108)
T 2np2_A 7 PKVTKSDIVDQIALNIKNNNLKLEKKYIRLVIDAFFE 43 (108)
T ss_dssp CEEEHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHhhhhhhhcCCCHHHHHHHHHHHHH
Confidence 35888999998874332 2334688889999988876
No 199
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=31.46 E-value=23 Score=20.86 Aligned_cols=34 Identities=15% Similarity=0.146 Sum_probs=27.3
Q ss_pred hcCCCCCCHHHHHHHHHHHHHhhhhhcccCCCcc
Q psy4179 51 ISLRFKPRVHVIKKCIDILIEKEYLERTETHKDM 84 (89)
Q Consensus 51 l~~~F~p~~~~iK~~IE~LIekeYl~R~~~~~~~ 84 (89)
+..+|-.+...|.+.+=.|-.+||+...++.|-.
T Consensus 35 IAkkLg~sK~~vNr~LY~L~kkG~V~~~~~~PP~ 68 (75)
T 1sfu_A 35 LSNRLKINKKKINQQLYKLQKEDTVKMVPSNPPK 68 (75)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHTTSEEEECCSSCE
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCEecCCCCCCC
Confidence 3345667889999999999999999988776543
No 200
>1t92_A General secretion pathway protein G; domain-swapping, zinc, pseudopilin, protein transport; 1.60A {Klebsiella pneumoniae} SCOP: d.24.1.3
Probab=31.42 E-value=9 Score=24.26 Aligned_cols=32 Identities=19% Similarity=0.392 Sum_probs=23.1
Q ss_pred CCCCCCHHHHHHHHHHHHHh-------------hhhhcccCCC--cceeec
Q psy4179 53 LRFKPRVHVIKKCIDILIEK-------------EYLERTETHK--DMYHYL 88 (89)
Q Consensus 53 ~~F~p~~~~iK~~IE~LIek-------------eYl~R~~~~~--~~y~Yi 88 (89)
.+|+-+.. .++.|+++ +||++.+.|| +.|.|+
T Consensus 31 G~YPtt~q----gL~aLv~~P~~~~~~~~w~~g~YL~~~P~DPWG~~Y~Y~ 77 (116)
T 1t92_A 31 SRYPTTEQ----GLQALVSAPSAEPHARNYPEGGYIRRLPQDPWGSDYQLL 77 (116)
T ss_dssp SSCCCTTT----CGGGGTSCCSSSSCCSSCCTTTTSSSCCBCTTSCBCEEE
T ss_pred CCCCCcHH----HHHHHHhCcCCCcccccccCCCCccccCCCCCCCceEEe
Confidence 46654433 57889885 8999988776 578886
No 201
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=31.16 E-value=19 Score=21.41 Aligned_cols=38 Identities=8% Similarity=0.065 Sum_probs=27.8
Q ss_pred cccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcccCC
Q psy4179 36 KTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTETH 81 (89)
Q Consensus 36 k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~~~ 81 (89)
..++..+|... +..+.+.+-+.|..|.+.||+.+..+.
T Consensus 44 ~~~s~~ela~~--------l~is~stvsr~l~~Le~~Glv~~~~~~ 81 (119)
T 2lkp_A 44 GPLPVTDLAEA--------IGMEQSAVSHQLRVLRNLGLVVGDRAG 81 (119)
T ss_dssp CCCCHHHHHHH--------HSSCHHHHHHHHHHHHHHCSEEEEEET
T ss_pred CCCCHHHHHHH--------HCcCHHHHHHHHHHHHHCCCEEEEecC
Confidence 45666655543 336788899999999999999886533
No 202
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=30.04 E-value=81 Score=21.62 Aligned_cols=34 Identities=15% Similarity=0.113 Sum_probs=26.1
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhhcccCCCcceee
Q psy4179 54 RFKPRVHVIKKCIDILIEKEYLERTETHKDMYHY 87 (89)
Q Consensus 54 ~F~p~~~~iK~~IE~LIekeYl~R~~~~~~~y~Y 87 (89)
.|.-+....+..++.++..|.+=||+.....|-|
T Consensus 177 ~l~ws~~~a~e~L~~~e~~G~l~~D~~~eg~~y~ 210 (218)
T 3cuq_B 177 LVGMSVLLAKERLLLAEKMGHLCRDDSVEGLRFY 210 (218)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEEEEESSSCEEEE
T ss_pred HhCCCHHHHHHHHHHHHHcCCEEEECCCCceEEe
Confidence 4556788889999999999999999654444434
No 203
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=29.94 E-value=21 Score=21.90 Aligned_cols=51 Identities=10% Similarity=0.178 Sum_probs=33.9
Q ss_pred HHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcccCCCcce
Q psy4179 26 AAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTETHKDMY 85 (89)
Q Consensus 26 AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~~~~~~y 85 (89)
..|...+. ...++..+|... +-.+.+.+-..+..|-+.|++.+..+....|
T Consensus 49 l~IL~~L~-~~~~s~~ela~~--------lgis~stvs~~L~~Le~~Glv~~~~~gr~~~ 99 (122)
T 1r1t_A 49 LRLLSLLA-RSELCVGDLAQA--------IGVSESAVSHQLRSLRNLRLVSYRKQGRHVY 99 (122)
T ss_dssp HHHHHHHT-TCCBCHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred HHHHHHHH-cCCCCHHHHHHH--------HCcCHHHHHHHHHHHHHCCCeEEEEeCCEEE
Confidence 34555554 355666655543 2357888999999999999998865444333
No 204
>3g2b_A Coenzyme PQQ synthesis protein D; helix-turn-helix, PQQ biosynthesis, biosynthetic protein; 1.66A {Xanthomonas campestris PV}
Probab=28.80 E-value=45 Score=19.94 Aligned_cols=32 Identities=16% Similarity=0.264 Sum_probs=21.0
Q ss_pred HHHHHHhcCCCCCCH----HHHHHHHHHHHHhhhhh
Q psy4179 45 AEVLNQISLRFKPRV----HVIKKCIDILIEKEYLE 76 (89)
Q Consensus 45 ~ev~~~l~~~F~p~~----~~iK~~IE~LIekeYl~ 76 (89)
.+++..|..+|.... .++-.-++.|.++++|+
T Consensus 59 ~eIv~~L~~~y~~~~e~i~~DV~~FL~~L~~~g~I~ 94 (95)
T 3g2b_A 59 AQIAQTLAAEFDADASEIETDVIELTTTLHQKRLLR 94 (95)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHCcCEe
Confidence 455566777887664 45566677777777763
No 205
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=28.14 E-value=45 Score=16.04 Aligned_cols=13 Identities=38% Similarity=0.547 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHh
Q psy4179 60 HVIKKCIDILIEK 72 (89)
Q Consensus 60 ~~iK~~IE~LIek 72 (89)
..||..|++|.++
T Consensus 9 tQIK~kvDsLLe~ 21 (28)
T 1txp_A 9 TQIKQKVDSLLEN 21 (28)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5689999999864
No 206
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=28.00 E-value=1e+02 Score=21.86 Aligned_cols=44 Identities=14% Similarity=0.025 Sum_probs=34.8
Q ss_pred HHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhc
Q psy4179 26 AAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLER 77 (89)
Q Consensus 26 AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R 77 (89)
..|.+++.....++-.+|..+ |.+|...|.+.|..|-+.||+..
T Consensus 8 ~~Il~~L~~~~~~s~~eLa~~--------l~vS~~ti~r~l~~L~~~G~~i~ 51 (321)
T 1bia_A 8 LKLIALLANGEFHSGEQLGET--------LGMSRAAINKHIQTLRDWGVDVF 51 (321)
T ss_dssp HHHHHHHTTSSCBCHHHHHHH--------HTSCHHHHHHHHHHHHHTTCCCE
T ss_pred HHHHHHHHcCCCcCHHHHHHH--------HCCCHHHHHHHHHHHHhCCCcEE
Confidence 346777777777887776654 56899999999999999998853
No 207
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=27.61 E-value=41 Score=20.33 Aligned_cols=27 Identities=7% Similarity=0.074 Sum_probs=22.1
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhhcccC
Q psy4179 54 RFKPRVHVIKKCIDILIEKEYLERTET 80 (89)
Q Consensus 54 ~F~p~~~~iK~~IE~LIekeYl~R~~~ 80 (89)
++..+...+.+-+..|-+.||+....+
T Consensus 35 ~~~i~~~~v~~il~~L~~~Glv~~~~g 61 (129)
T 2y75_A 35 TNNLSEHYLEQLVSPLRNAGLVKSIRG 61 (129)
T ss_dssp HTTSCHHHHHHHHHHHHHTTSEEEC--
T ss_pred HHCcCHHHHHHHHHHHHHCCceEecCC
Confidence 466788999999999999999987643
No 208
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=27.37 E-value=1.1e+02 Score=18.55 Aligned_cols=56 Identities=11% Similarity=0.128 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcc
Q psy4179 20 RKLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERT 78 (89)
Q Consensus 20 R~~~i~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~ 78 (89)
....+..+|..++. .+.++--+|...+-+... +..+...+-..+..|-+.|||.+.
T Consensus 11 ~~g~l~~~IL~lL~-~~p~~gyel~~~l~~~~~--~~i~~gtly~~L~~Le~~GlI~~~ 66 (117)
T 3elk_A 11 LHGLITLYILKELV-KRPMHGYELQKSMFETTG--QALPQGSIYILLKTMKERGFVISE 66 (117)
T ss_dssp HHHHHHHHHHHHHH-HSCEEHHHHHHHHHHHHS--CCCCTTHHHHHHHHHHHHTSEEEE
T ss_pred HhhHHHHHHHHHHH-cCCCCHHHHHHHHHHHhC--CCCCcchHHHHHHHHHHCCCEEEE
Confidence 45677888888886 477888899988877664 345668899999999999999985
No 209
>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}
Probab=27.35 E-value=60 Score=23.39 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=26.2
Q ss_pred CcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcc
Q psy4179 39 QHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERT 78 (89)
Q Consensus 39 ~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~ 78 (89)
+.+++...+.. ...|+|....+ .++.|+..|||.-+
T Consensus 235 ~~~El~~~l~~--pg~F~p~~~lV--~ldfl~RhG~i~~~ 270 (300)
T 3dup_A 235 PAAKVVEAVRT--TEAFKFNVNLT--VIDFAIRHGLIDPD 270 (300)
T ss_dssp EHHHHHHHHHH--CCCBCTTHHHH--HHHHHHHTTSSCTT
T ss_pred CHHHHHHHHhc--CCCcCccHHHH--HHHHHHHhCCcCCc
Confidence 34445444433 25899999977 89999999999854
No 210
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=27.07 E-value=55 Score=23.92 Aligned_cols=34 Identities=12% Similarity=0.102 Sum_probs=26.4
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHhhhhhcccCCCc
Q psy4179 50 QISLRFKPRVHVIKKCIDILIEKEYLERTETHKD 83 (89)
Q Consensus 50 ~l~~~F~p~~~~iK~~IE~LIekeYl~R~~~~~~ 83 (89)
.+...+..+...+.+.+..|.+.|+|++....++
T Consensus 316 ~~~~~~gvS~~Ta~r~L~~L~e~GiL~~~~~gR~ 349 (373)
T 2qc0_A 316 NLVESGLAKRQTASVYLKQLCDIGVLEEVQSGKE 349 (373)
T ss_dssp HHHHTSSSCHHHHHHHHHHHHHTTSCEEC--CCS
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCCcEEEecCCCc
Confidence 3445678899999999999999999999754443
No 211
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=27.04 E-value=58 Score=23.80 Aligned_cols=45 Identities=16% Similarity=0.246 Sum_probs=36.8
Q ss_pred HHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcc
Q psy4179 26 AAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERT 78 (89)
Q Consensus 26 AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~ 78 (89)
..|.+.+.....++..+|...+ -.+.+.+.+.++.|++.+++...
T Consensus 42 ~~il~~l~~~~~~sr~ela~~~--------gls~~tv~~~v~~L~~~gli~~~ 86 (429)
T 1z05_A 42 GRVYKLIDQKGPISRIDLSKES--------ELAPASITKITRELIDAHLIHET 86 (429)
T ss_dssp HHHHHHHHHHCSBCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCCcCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEec
Confidence 4577888888889988887653 36888999999999999999774
No 212
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=26.92 E-value=55 Score=24.15 Aligned_cols=33 Identities=12% Similarity=0.098 Sum_probs=24.9
Q ss_pred hcCCCCCCHHHHHHHHHHHHHhhhhhcccCCCc
Q psy4179 51 ISLRFKPRVHVIKKCIDILIEKEYLERTETHKD 83 (89)
Q Consensus 51 l~~~F~p~~~~iK~~IE~LIekeYl~R~~~~~~ 83 (89)
+...+..+.....+.+..|.+.|+|++..+.++
T Consensus 317 ~~~~~~~S~~TA~r~L~~L~e~GiL~~~~~gR~ 349 (373)
T 3eqx_A 317 LVESGLAKRQTASVYLKQLCDIGVLEEVQSGKE 349 (373)
T ss_dssp HHHTSSSCHHHHHHHHHHHHHTTSCEEC--CCS
T ss_pred HHHHhCcCHHHHHHHHHHHHHCCcEEEeCCCCc
Confidence 334567788889999999999999998655443
No 213
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=26.61 E-value=55 Score=20.99 Aligned_cols=19 Identities=21% Similarity=0.253 Sum_probs=16.7
Q ss_pred CCHHHHHHHHHHHHHhhhh
Q psy4179 57 PRVHVIKKCIDILIEKEYL 75 (89)
Q Consensus 57 p~~~~iK~~IE~LIekeYl 75 (89)
.+...|...|+.|.+.+||
T Consensus 44 ~~~~~i~~vl~~l~~~g~l 62 (159)
T 3c1d_A 44 ATAEDYERVIAWCHEHGYL 62 (159)
T ss_dssp CCHHHHHHHHHHHHHTTSC
T ss_pred CCHHHHHHHHHHHHHcCCc
Confidence 4677899999999999998
No 214
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=26.10 E-value=28 Score=23.64 Aligned_cols=36 Identities=14% Similarity=0.103 Sum_probs=27.5
Q ss_pred ccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcccC
Q psy4179 37 TLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTET 80 (89)
Q Consensus 37 ~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~~ 80 (89)
.++..+|... +-.+.+.+-.-+..|.+.||+.|+++
T Consensus 21 ~~s~~ela~~--------~gl~~stv~r~l~~L~~~G~v~~~~~ 56 (241)
T 2xrn_A 21 GLSLAAIAQL--------VGLPRSTVQRIINALEEEFLVEALGP 56 (241)
T ss_dssp CEEHHHHHHH--------TTSCHHHHHHHHHHHHTTTSEEECGG
T ss_pred CCCHHHHHHH--------HCcCHHHHHHHHHHHHHCCCEEEeCC
Confidence 5776665543 34567778899999999999999864
No 215
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=26.03 E-value=89 Score=20.56 Aligned_cols=27 Identities=11% Similarity=0.001 Sum_probs=21.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 53 LRFKPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 53 ~~F~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
+|=+.+..+|+.+...|=-.+|..|++
T Consensus 54 ~RKTv~a~DV~~a~~~lg~~~v~d~~~ 80 (154)
T 1f1e_A 54 GKKTLMEEHLKALADVLMVEGVEDYDG 80 (154)
T ss_dssp TCSEECHHHHHHHHHHHTCTTSTTCCS
T ss_pred CCCcCCHHHHHHHHHhcccccCCcccc
Confidence 466788899999998887777877764
No 216
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=25.50 E-value=65 Score=21.47 Aligned_cols=45 Identities=18% Similarity=0.175 Sum_probs=34.7
Q ss_pred HHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcc
Q psy4179 26 AAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERT 78 (89)
Q Consensus 26 AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~ 78 (89)
..|...+..+..++-.+|.. .|.+|...|+.-+..|=..|.++|.
T Consensus 15 ~~i~~~l~~~~~~~~~~la~--------~~~vs~~TiRrDl~eL~~~~l~~r~ 59 (190)
T 4a0z_A 15 EAIRQQIDSNPFITDHELSD--------LFQVSIQTIRLDRTYLNIPELRKRI 59 (190)
T ss_dssp HHHHHHHHHCTTCCHHHHHH--------HHTSCHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHCCCEeHHHHHH--------HHCCCHHHHHHHHHHhcCcchhhHh
Confidence 45666677788888777764 4778999999999988888887773
No 217
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=25.28 E-value=28 Score=19.16 Aligned_cols=44 Identities=11% Similarity=0.176 Sum_probs=32.4
Q ss_pred HHHHhhccc-cccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcc
Q psy4179 27 AIVRIMKMR-KTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERT 78 (89)
Q Consensus 27 aIVRiMK~~-k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~ 78 (89)
.|..+++.. ..++..+|... +-.+.+.+-+.|..|-+.|||...
T Consensus 14 ~IL~~L~~~~~~~s~~eLA~~--------lglsr~tv~~~l~~L~~~G~I~~~ 58 (67)
T 2heo_A 14 KILQVLSDDGGPVAIFQLVKK--------CQVPKKTLNQVLYRLKKEDRVSSP 58 (67)
T ss_dssp HHHHHHHHHCSCEEHHHHHHH--------HCSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCCcCHHHHHHH--------HCcCHHHHHHHHHHHHHCCcEecC
Confidence 466666654 45777665543 456789999999999999999773
No 218
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=24.93 E-value=1e+02 Score=17.49 Aligned_cols=46 Identities=7% Similarity=0.127 Sum_probs=25.8
Q ss_pred HHHHHHHHhhccccccCcHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHH
Q psy4179 23 LIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRF-KPRVHVIKKCIDILI 70 (89)
Q Consensus 23 ~i~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F-~p~~~~iK~~IE~LI 70 (89)
.|-++|-.|++.---.+... ..|..+|..+| ..+...=|.-|..+|
T Consensus 16 ei~~~I~~IL~~aDL~tvT~--K~VR~~Le~~~pg~dLs~kK~~I~~~I 62 (70)
T 1q1v_A 16 ELKETIKKLLASANLEEVTM--KQICKKVYENYPTYDLTERKDFIKTTV 62 (70)
T ss_dssp HHHHHHHHHHTTSCGGGCCH--HHHHHHHHHHCSSSCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHhH--HHHHHHHHHHccCCCChHHHHHHHHHH
Confidence 46677777777654333332 45666666677 455444455555544
No 219
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=24.85 E-value=37 Score=23.29 Aligned_cols=45 Identities=11% Similarity=0.205 Sum_probs=31.5
Q ss_pred HHHhhc-cccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcccC
Q psy4179 28 IVRIMK-MRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERTET 80 (89)
Q Consensus 28 IVRiMK-~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~~~ 80 (89)
|...+. ....++..||...+ -.+.+.+-.-+..|.+.||+.|+++
T Consensus 28 iL~~l~~~~~~~~~~eia~~~--------gl~kstv~r~l~tL~~~G~v~~~~~ 73 (260)
T 2o0y_A 28 LLELFDAAHPTRSLKELVEGT--------KLPKTTVVRLVATMCARSVLTSRAD 73 (260)
T ss_dssp HHTTCBTTBSSBCHHHHHHHH--------CCCHHHHHHHHHHHHHTTSEEECTT
T ss_pred HHHHHhhCCCCcCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEECCC
Confidence 445554 34567776666543 2456677788999999999999864
No 220
>1wlq_C CDT1 protein; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_C*
Probab=24.47 E-value=67 Score=22.22 Aligned_cols=29 Identities=24% Similarity=0.405 Sum_probs=19.9
Q ss_pred HHHhhcccc-ccCcHHHHHHHHHHhcCCCC
Q psy4179 28 IVRIMKMRK-TLQHQQLVAEVLNQISLRFK 56 (89)
Q Consensus 28 IVRiMK~~k-~l~~~~L~~ev~~~l~~~F~ 56 (89)
|+++|..++ .++++.+...|...++.+|.
T Consensus 49 v~~ml~~R~~~~Tf~~ik~~VE~~trr~F~ 78 (201)
T 1wlq_C 49 IVSMLHNRSETVTFAKVKQGVQEMMRKRFE 78 (201)
T ss_dssp HHHHHHHTTCCCBHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHcCCccccHHHHHHHHHHHhcCCcC
Confidence 466665444 46777777777777777775
No 221
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP}
Probab=24.37 E-value=79 Score=20.31 Aligned_cols=50 Identities=6% Similarity=0.193 Sum_probs=39.6
Q ss_pred HHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcc
Q psy4179 27 AIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERT 78 (89)
Q Consensus 27 aIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~ 78 (89)
.|..++.. +.+.--+|...+.+.. ..|.++...+-..+..|-+.|||.+.
T Consensus 48 ~IL~lL~~-~p~~GYeI~k~l~~~~-~~~~is~gtLYp~L~rLE~~GlI~~~ 97 (148)
T 2zfw_A 48 YVLAVLRH-EDSYGTELIQHLETHW-PNYRLSDTVLYTALKFLEDEQIISGY 97 (148)
T ss_dssp HHHHHHTT-CCEEHHHHHHHHHHHC-TTEECCSHHHHHHHHHHHHTSSEEEE
T ss_pred HHHHHHHh-CCCcHHHHHHHHHHHc-CCCCCChhHHHHHHHHHHHCCCEEEE
Confidence 46666653 6677778888776654 56789999999999999999999885
No 222
>2krc_A DNA-directed RNA polymerase subunit delta; delta subunit, GRAM-positive bacteria, nucleotidyltransferase, transcription, transferase; NMR {Bacillus subtilis}
Probab=23.87 E-value=71 Score=19.50 Aligned_cols=29 Identities=21% Similarity=0.436 Sum_probs=21.3
Q ss_pred HHHHHHHHhhcc-ccccCcHHHHHHHHHHhc
Q psy4179 23 LIQAAIVRIMKM-RKTLQHQQLVAEVLNQIS 52 (89)
Q Consensus 23 ~i~AaIVRiMK~-~k~l~~~~L~~ev~~~l~ 52 (89)
.|+.| --||+. .+.|++.+|+.+|...+.
T Consensus 15 miDvA-y~iL~~~~~~~~F~dL~~eV~~~~~ 44 (99)
T 2krc_A 15 LVEIA-HELFEEHKKPVPFQELLNEIASLLG 44 (99)
T ss_dssp HHHHH-HHHHHHHCSCEEHHHHHHHHHHHHT
T ss_pred HHHHH-HHHHHHcCCcccHHHHHHHHHHHhC
Confidence 45555 345544 478999999999998874
No 223
>1d8j_A General transcription factor TFIIE-beta; winged helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.18 PDB: 1d8k_A
Probab=23.84 E-value=59 Score=19.38 Aligned_cols=58 Identities=21% Similarity=0.323 Sum_probs=34.2
Q ss_pred HHHHHHHHhhccc------cccCcHHHHHHHHHHhcCCCCCCHHHHHHHH--HHHHHhhhhhcccCCCcceeecC
Q psy4179 23 LIQAAIVRIMKMR------KTLQHQQLVAEVLNQISLRFKPRVHVIKKCI--DILIEKEYLERTETHKDMYHYLA 89 (89)
Q Consensus 23 ~i~AaIVRiMK~~------k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~I--E~LIekeYl~R~~~~~~~y~Yia 89 (89)
-.=|-||.-||.+ .-++..|++.++- ....+.+ .|.-+ |.|-...-|+-. |+ .|.|.|
T Consensus 11 ~~lakiV~~mK~rh~~g~~~PltL~EILde~~-----~~d~~~~-~k~wL~~eaL~~npkI~~~--dg-kf~fkP 76 (81)
T 1d8j_A 11 GVLAKIVNYMKTRHQRGDTHPLTLDEILDETQ-----HLDIGLK-QKQWLMTEALVNNPKIEVI--DG-KYAFKP 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHTCCSCBCHHHHHHHHT-----CSSCCHH-HHHHHHTTHHHHCTTEEEC--SS-SEEECC
T ss_pred ehHHHHHHHHHHhhccCCCCCccHHHHHHHHh-----ccCCCHH-HHHHHHHHHhhcCCceEEe--CC-ceeccC
Confidence 3457899999974 4588888777664 2333444 34333 556656555543 22 566654
No 224
>1no1_A G39P, replisome organizer, gene 39; helical, bipartite, natively unfolded domain, replication; 2.40A {Bacillus phage SPP1} SCOP: a.179.1.1
Probab=23.66 E-value=58 Score=20.86 Aligned_cols=34 Identities=12% Similarity=0.183 Sum_probs=19.5
Q ss_pred ccCcHHHHHHHHHHhc-CCCCCCHHHHHHHHHHHH
Q psy4179 37 TLQHQQLVAEVLNQIS-LRFKPRVHVIKKCIDILI 70 (89)
Q Consensus 37 ~l~~~~L~~ev~~~l~-~~F~p~~~~iK~~IE~LI 70 (89)
...|.+....+...+. +.|+|++++|-+....+.
T Consensus 39 d~~ye~v~~Al~~hI~~~~yPPsiadI~r~~~~i~ 73 (126)
T 1no1_A 39 EYELEEIMNNLTDYAKVNKFPPTVSDLLKAQSEQR 73 (126)
T ss_dssp TSCHHHHHHHHHHHHHHCSSCCCGGGGCC------
T ss_pred cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhh
Confidence 4556666666665553 679999999877665554
No 225
>1hst_A Histone H5; chromosomal protein; 2.60A {Gallus gallus} SCOP: a.4.5.13
Probab=23.54 E-value=67 Score=19.08 Aligned_cols=53 Identities=26% Similarity=0.239 Sum_probs=32.3
Q ss_pred HHHHHHHHhhccccccCcHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHHhhhhhcc
Q psy4179 23 LIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKP-RVHVIKKCIDILIEKEYLERT 78 (89)
Q Consensus 23 ~i~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p-~~~~iK~~IE~LIekeYl~R~ 78 (89)
.|-.|| .-+|.++-.+..-+...+...- ...| ....++..+..|+++|-|.+-
T Consensus 13 MI~eAI-~~lker~GsS~~AI~KyI~~~y--~~~~~~~~~l~~aLk~~v~~G~l~q~ 66 (90)
T 1hst_A 13 MIAAAI-RAEKSRGGSSRQSIQKYIKSHY--KVGHNADLQIKLSIRRLLAAGVLKQT 66 (90)
T ss_dssp HHHHHH-HTCCCSSCEEHHHHHHHHHHHS--CCCTTHHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHH-HHhccCCCCCHHHHHHHHHHHc--cCchhHHHHHHHHHHHHHHcCCeeee
Confidence 344453 3457777777777666655441 1222 255688888888888877654
No 226
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.38 E-value=33 Score=20.81 Aligned_cols=25 Identities=16% Similarity=0.166 Sum_probs=21.0
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhccc
Q psy4179 55 FKPRVHVIKKCIDILIEKEYLERTE 79 (89)
Q Consensus 55 F~p~~~~iK~~IE~LIekeYl~R~~ 79 (89)
-......+.+++..|-.++||.+-.
T Consensus 63 tnL~~~~vtkiLK~LE~k~lIK~Vk 87 (95)
T 2yu3_A 63 SNLPLTEINKILKNLESKKLIKAVK 87 (95)
T ss_dssp HTCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred hCCCHHHHHHHHHHHHhCCCEEEec
Confidence 3456788999999999999999853
No 227
>1cf7_B Protein (transcription factor DP-2); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=21.96 E-value=74 Score=19.44 Aligned_cols=55 Identities=7% Similarity=0.210 Sum_probs=36.4
Q ss_pred HHHHHHHhhccccccCcHHHHHHHHHHhcCCC--CCC-----HHHHHHH----HHHHHHhhhhhcc
Q psy4179 24 IQAAIVRIMKMRKTLQHQQLVAEVLNQISLRF--KPR-----VHVIKKC----IDILIEKEYLERT 78 (89)
Q Consensus 24 i~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F--~p~-----~~~iK~~----IE~LIekeYl~R~ 78 (89)
+-..+.-+++.+++.+|++...+++..+.+.- .|. ...++++ +.-|+.-|+++.+
T Consensus 15 fS~kVcekVk~k~~Tty~eVAdeLV~e~~~~~~~~~~~~~~d~~~~rRRvYD~~NVl~a~gii~K~ 80 (95)
T 1cf7_B 15 FSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNHLAADSAYDQKNIRRRVYDALNVLMAMNIISKE 80 (95)
T ss_dssp HHHHHHHHHHHHSEECHHHHHHHHHHHHHTCTTCCGGGSHHHHHHHHHHHHHHHHHHHHTTSBCCC
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHhcccccCccchhcccccchhhHHHHHHHHHHhcceecC
Confidence 34456788999999999999999998875321 111 1224444 4556667777773
No 228
>2wa0_A Melanoma-associated antigen 4; immune system, multiple anomalous dispersion, cancer/testis 1.4, melanoma antigen family A 4, CT1.4, MAGE-41; 2.30A {Homo sapiens}
Probab=21.68 E-value=31 Score=24.31 Aligned_cols=54 Identities=15% Similarity=0.206 Sum_probs=31.2
Q ss_pred cccccCcHHHHHHHHHHhc---CCCCCCHHHHHHHH-HHHHHhhhhhcc---cCCCcceeec
Q psy4179 34 MRKTLQHQQLVAEVLNQIS---LRFKPRVHVIKKCI-DILIEKEYLERT---ETHKDMYHYL 88 (89)
Q Consensus 34 ~~k~l~~~~L~~ev~~~l~---~~F~p~~~~iK~~I-E~LIekeYl~R~---~~~~~~y~Yi 88 (89)
...+++-.+|+...- .+. .+--|-....++-| +.|+..+||+|. ..|+..|.|.
T Consensus 136 ~gn~~~Ee~Lw~~L~-~lgv~~g~~h~ifG~~rklit~~~Vkq~YLe~~qv~~sdp~~~ef~ 196 (240)
T 2wa0_A 136 EGDSASEEEIWEELG-VMGVYDGREHTVYGEPRKLLTQDWVQENYLEYRQVPGSNPARYEFL 196 (240)
T ss_dssp HSSCEEHHHHHHHHH-HTTCCTTSCBTTTBCHHHHHHTHHHHTTSEEEECC------CCEEE
T ss_pred cCCCCCHHHHHHHHH-hcCCCCCCcCcCCCCHHHHHHHHHHHcCCeEEEeecCCCCCeEEEE
Confidence 456677777765443 332 11113334578888 889999999994 3345678774
No 229
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=21.46 E-value=1.3e+02 Score=17.55 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy4179 7 LEQETTHKHIEEDRKLLIQAAIVR 30 (89)
Q Consensus 7 ~e~~~t~~~v~~dR~~~i~AaIVR 30 (89)
.+...++..++..|...|+.++-.
T Consensus 4 ~~~R~~Hn~~ER~RR~~ln~~f~~ 27 (88)
T 1nkp_A 4 NVKRRTHNVLERQRRNELKRSFFA 27 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHH
Confidence 456788999999999999988544
No 230
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=21.41 E-value=54 Score=20.61 Aligned_cols=15 Identities=27% Similarity=0.326 Sum_probs=13.3
Q ss_pred CCHHHHHHHHHHHHH
Q psy4179 57 PRVHVIKKCIDILIE 71 (89)
Q Consensus 57 p~~~~iK~~IE~LIe 71 (89)
.++.+||+++|.||.
T Consensus 108 tspddfkkslerlir 122 (134)
T 2l69_A 108 TSPDDFKKSLERLIR 122 (134)
T ss_dssp SSHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHH
Confidence 489999999999994
No 231
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=21.20 E-value=67 Score=21.70 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=26.3
Q ss_pred ccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhcc
Q psy4179 37 TLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLERT 78 (89)
Q Consensus 37 ~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R~ 78 (89)
.++..||... +..+.+.+-+-+..|.+.||+.|+
T Consensus 23 ~~~~~ela~~--------~gl~~stv~r~l~~L~~~G~v~~~ 56 (249)
T 1mkm_A 23 DVSVSEIAEK--------FNMSVSNAYKYMVVLEEKGFVLRK 56 (249)
T ss_dssp CBCHHHHHHH--------TTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCCHHHHHHH--------HCcCHHHHHHHHHHHHHCCcEEEC
Confidence 5776665543 345677788899999999999998
No 232
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=21.03 E-value=20 Score=25.19 Aligned_cols=47 Identities=23% Similarity=0.331 Sum_probs=0.0
Q ss_pred HHHHHHHhhcccc---ccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhc
Q psy4179 24 IQAAIVRIMKMRK---TLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLER 77 (89)
Q Consensus 24 i~AaIVRiMK~~k---~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R 77 (89)
++..|..++|... -++.+ ++..+|++ .+...|+++++.|++.|+|=-
T Consensus 208 ~~~~Vl~~i~~~~~~~Gi~~~----~I~~~l~~---~~~~~v~~al~~L~~eG~IYs 257 (270)
T 2pi2_A 208 AQNQVLNLIKACPRPEGLNFQ----DLKNQLKH---MSVSSIKQAVDFLSNEGHIYS 257 (270)
T ss_dssp ---------------------------------------------------------
T ss_pred HHHHHHHHHHhCCCccCCCHH----HHHHHhcC---CCHHHHHHHHHHHHhCCEEec
Confidence 5556666666642 23332 33334432 457889999999999998843
No 233
>2klq_A CBD, P105MCM, DNA replication licensing factor MCM6; PRE-RC, CDT1, CBD structure, ATP-BIND cycle, DNA-binding, nucleotide-binding, nucleus; HET: DNA; NMR {Homo sapiens}
Probab=20.63 E-value=1.6e+02 Score=18.11 Aligned_cols=53 Identities=23% Similarity=0.282 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhhcc------ccccCcHHHHHHHHHHhcCCCCC------CHHHHHHHHHHHHHhh
Q psy4179 21 KLLIQAAIVRIMKM------RKTLQHQQLVAEVLNQISLRFKP------RVHVIKKCIDILIEKE 73 (89)
Q Consensus 21 ~~~i~AaIVRiMK~------~k~l~~~~L~~ev~~~l~~~F~p------~~~~iK~~IE~LIeke 73 (89)
=..|-.+||+.|+. ...++-.+|++.-.++..+-+.- ....+++.|..||.++
T Consensus 13 Y~~i~n~lV~~ir~~E~~~~~~G~~~~eLv~WYLeq~e~~i~seeel~~e~~lv~kVI~rLI~~D 77 (114)
T 2klq_A 13 YSRISNLIVLHLRKVEEEEDESALKRSELVNWYLKEIESEIDSEEELINKKRIIEKVIHRLTHYD 77 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSSCBCHHHHHHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhC
Confidence 34566777888875 46799999999999998755442 2456888999999854
No 234
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=20.34 E-value=28 Score=22.08 Aligned_cols=46 Identities=11% Similarity=0.151 Sum_probs=34.1
Q ss_pred HHHHHHHhhccccccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhhc
Q psy4179 24 IQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEKEYLER 77 (89)
Q Consensus 24 i~AaIVRiMK~~k~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIekeYl~R 77 (89)
++..|+..++....++..+ |..+|-.+.+-+..++..|-+.|+|.+
T Consensus 14 l~~~Il~~l~~~~~ls~~e--------La~~lgvSr~~vr~al~~L~~~Gli~~ 59 (163)
T 2gqq_A 14 IDRNILNELQKDGRISNVE--------LSKRVGLSPTPCLERVRRLERQGFIQG 59 (163)
T ss_dssp HHHHHHHHHHHCSSCCTTG--------GGTSSSCCTTTSSSTHHHHHHHTSEEE
T ss_pred HHHHHHHHHHhCCCCCHHH--------HHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 4455666666666666544 445688888889999999999999985
No 235
>1owf_A IHF-alpha, integration HOST factor alpha-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ihf_A 1ouz_A 1owg_A 2ht0_A
Probab=20.09 E-value=1.4e+02 Score=17.38 Aligned_cols=37 Identities=14% Similarity=0.313 Sum_probs=27.0
Q ss_pred ccCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHh--hhhhc
Q psy4179 37 TLQHQQLVAEVLNQISLRFKPRVHVIKKCIDILIEK--EYLER 77 (89)
Q Consensus 37 ~l~~~~L~~ev~~~l~~~F~p~~~~iK~~IE~LIek--eYl~R 77 (89)
+|+-.+|+..+.+... .+..+++..++.|++- +.|..
T Consensus 2 ~m~k~eli~~ia~~~~----ls~~~~~~vl~~~~~~i~~~L~~ 40 (99)
T 1owf_A 2 ALTKAEMSEYLFDKLG----LSKRDAKELVELFFEEIRRALEN 40 (99)
T ss_dssp CBCHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHhC----CCHHHHHHHHHHHHHHHHHHHhC
Confidence 4778899999887653 4788888888888763 44444
Done!