RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4179
         (89 letters)



>d1ldja1 a.4.5.34 (A:687-776) Anaphase promoting complex (APC)
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 90

 Score =  101 bits (252), Expect = 2e-30
 Identities = 72/89 (80%), Positives = 77/89 (86%)

Query: 1  MKTELKLEQETTHKHIEEDRKLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVH 60
          MKTE K EQETTHK+IEEDRKLLIQAAIVRIMKMRK L+HQQL+ EVL Q+S RFKPRV 
Sbjct: 2  MKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVP 61

Query: 61 VIKKCIDILIEKEYLERTETHKDMYHYLA 89
          VIKKCIDILIEKEYLER +  KD Y YLA
Sbjct: 62 VIKKCIDILIEKEYLERVDGEKDTYSYLA 90


>d1iuya_ a.4.5.34 (A:) Cullin-3 homologue {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 92

 Score = 98.0 bits (244), Expect = 3e-29
 Identities = 44/88 (50%), Positives = 59/88 (67%)

Query: 2  KTELKLEQETTHKHIEEDRKLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHV 61
          + E   E++ T + +++DRK  I+AAIVRIMK RK +QH  LVAEV  Q+  RF P   V
Sbjct: 5  QGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVV 64

Query: 62 IKKCIDILIEKEYLERTETHKDMYHYLA 89
          IKK I+ LIE+EYL RT   + +Y Y+A
Sbjct: 65 IKKRIEGLIEREYLARTPEDRKVYTYVA 92


>d2hyec1 a.4.5.34 (C:676-759) Cullin-4A {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 84

 Score = 91.0 bits (226), Expect = 1e-26
 Identities = 40/86 (46%), Positives = 59/86 (68%), Gaps = 2/86 (2%)

Query: 4  ELKLEQETTHKHIEEDRKLLIQAAIVRIMKMRKTLQHQQLVAEVLNQISLRFKPRVHVIK 63
          E   EQ +T + + +DR+  I AAIVRIMKMRKTL H  LV+E+ NQ  L+F  +   +K
Sbjct: 1  ETVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQ--LKFPVKPGDLK 58

Query: 64 KCIDILIEKEYLERTETHKDMYHYLA 89
          K I+ LI+++Y+ER + + + YHY+A
Sbjct: 59 KRIESLIDRDYMERDKDNPNQYHYVA 84


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.135    0.368 

Gapped
Lambda     K      H
   0.267   0.0594    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 317,462
Number of extensions: 12233
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 10
Length of query: 89
Length of database: 2,407,596
Length adjustment: 53
Effective length of query: 36
Effective length of database: 1,679,906
Effective search space: 60476616
Effective search space used: 60476616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.2 bits)