Query psy4181
Match_columns 73
No_of_seqs 106 out of 471
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 18:55:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4181.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4181hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3plu_A Ubiquitin-like modifier 100.0 3.5E-37 1.2E-41 187.9 10.3 72 1-72 21-92 (93)
2 1uh6_A Ubiquitin-like 5; beta- 100.0 1.9E-34 6.5E-39 177.6 8.1 73 1-73 28-100 (100)
3 3phx_B Ubiquitin-like protein 100.0 2.2E-30 7.5E-35 150.0 11.2 73 1-73 4-76 (79)
4 2lxa_A Ubiquitin-like protein 100.0 2.8E-31 9.7E-36 159.3 6.6 72 1-72 1-76 (87)
5 2kk8_A Uncharacterized protein 100.0 2.1E-29 7.2E-34 149.3 9.5 72 2-73 11-83 (84)
6 4dwf_A HLA-B-associated transc 100.0 3.1E-29 1.1E-33 148.3 9.9 72 1-73 5-76 (90)
7 3m62_B UV excision repair prot 100.0 1.8E-29 6E-34 155.0 8.9 72 1-72 1-72 (106)
8 2uyz_B Small ubiquitin-related 100.0 2.6E-29 8.8E-34 145.5 9.0 72 2-73 4-75 (79)
9 4fbj_B NEDD8; effector-HOST ta 100.0 3.1E-29 1E-33 148.9 9.5 72 2-73 1-72 (88)
10 2faz_A Ubiquitin-like containi 100.0 5.7E-29 1.9E-33 143.5 10.2 73 1-73 2-76 (78)
11 4eew_A Large proline-rich prot 100.0 5.3E-29 1.8E-33 146.8 9.9 72 1-73 17-88 (88)
12 1wyw_B Ubiquitin-like protein 100.0 4.3E-29 1.5E-33 150.9 8.9 73 1-73 21-93 (97)
13 1ndd_A NEDD8, protein (ubiquit 100.0 1.8E-28 6.2E-33 139.5 10.6 72 2-73 1-72 (76)
14 2wyq_A HHR23A, UV excision rep 100.0 2.4E-28 8.1E-33 142.6 11.2 73 1-73 5-80 (85)
15 2hj8_A Interferon-induced 17 k 100.0 3.7E-29 1.3E-33 148.4 7.7 73 1-73 4-76 (88)
16 3v6c_B Ubiquitin; structural g 100.0 2.4E-28 8.1E-33 145.3 10.7 73 1-73 17-89 (91)
17 3dbh_I NEDD8; cell cycle, acti 100.0 1.6E-28 5.6E-33 143.9 9.8 73 1-73 12-84 (88)
18 3n3k_B Ubiquitin; hydrolase, p 100.0 1.9E-28 6.7E-33 142.5 9.6 73 1-73 3-75 (85)
19 3mtn_B UBA80, ubcep1, ubiquiti 100.0 5.3E-28 1.8E-32 140.5 10.7 73 1-73 3-75 (85)
20 1wy8_A NP95-like ring finger p 100.0 4.5E-28 1.6E-32 142.8 10.3 73 1-73 7-81 (89)
21 1wh3_A 59 kDa 2'-5'-oligoadeny 100.0 3.4E-28 1.1E-32 142.7 9.6 73 1-73 7-79 (87)
22 1sif_A Ubiquitin; hydrophobic 100.0 6.3E-28 2.2E-32 143.2 9.6 72 2-73 10-81 (88)
23 2fnj_B Transcription elongatio 100.0 2.1E-28 7.1E-33 154.4 7.5 72 2-73 1-80 (118)
24 3a9j_A Ubiquitin; protein comp 100.0 1.5E-27 5.1E-32 135.7 10.3 72 2-73 1-72 (76)
25 4a20_A Ubiquitin-like protein 100.0 7.4E-28 2.5E-32 147.1 9.5 72 1-72 19-94 (98)
26 2dzi_A Ubiquitin-like protein 100.0 9.8E-28 3.4E-32 138.5 9.5 73 1-73 7-79 (81)
27 4hcn_B Polyubiquitin, ubiquiti 100.0 7.8E-28 2.7E-32 145.2 9.4 73 1-73 22-94 (98)
28 3k9o_B Ubiquitin, UBB+1; E2-25 99.9 1.5E-27 5.2E-32 142.2 10.4 72 2-73 2-73 (96)
29 2kan_A Uncharacterized protein 99.9 1.6E-27 5.5E-32 143.7 10.1 72 1-73 15-87 (94)
30 1wgh_A Ubiquitin-like 3, HCG-1 99.9 1.9E-27 6.6E-32 149.4 10.7 73 1-73 16-98 (116)
31 1uel_A HHR23B, UV excision rep 99.9 2.3E-27 7.8E-32 142.5 10.5 71 2-72 1-74 (95)
32 2bwf_A Ubiquitin-like protein 99.9 2.9E-27 1E-31 135.4 10.3 71 2-73 5-75 (77)
33 4ajy_B Transcription elongatio 99.9 7.7E-28 2.6E-32 151.9 8.5 72 2-73 1-80 (118)
34 2gow_A HCG-1 protein, ubiquiti 99.9 2.2E-27 7.5E-32 150.6 9.6 73 1-73 17-99 (125)
35 3vdz_A Ubiquitin-40S ribosomal 99.9 5.8E-27 2E-31 144.7 11.2 73 1-73 35-107 (111)
36 1ttn_A DC-UBP, dendritic cell- 99.9 1.9E-27 6.5E-32 145.6 8.9 73 1-73 23-95 (106)
37 3rt3_B Ubiquitin-like protein 99.9 4.8E-27 1.6E-31 150.6 11.2 72 2-73 82-153 (159)
38 2kdb_A Homocysteine-responsive 99.9 1E-27 3.5E-32 146.6 7.6 70 2-71 24-99 (99)
39 1wgd_A Homocysteine-responsive 99.9 1.6E-27 5.3E-32 142.4 8.2 73 1-73 7-85 (93)
40 4dbg_A Ranbp-type and C3HC4-ty 99.9 4.3E-27 1.5E-31 145.8 10.2 70 2-71 25-97 (105)
41 2l7r_A Ubiquitin-like protein 99.9 2.5E-27 8.7E-32 142.1 8.8 71 1-73 19-89 (93)
42 1se9_A Ubiquitin family; ubiqu 99.9 3.4E-27 1.2E-31 150.3 9.5 73 1-73 16-102 (126)
43 1yx5_B Ubiquitin; proteasome, 99.9 7.9E-27 2.7E-31 140.3 10.3 72 2-73 1-72 (98)
44 3b1l_X E3 ubiquitin-protein li 99.9 4E-29 1.4E-33 143.3 0.0 72 2-73 1-72 (76)
45 1v2y_A 3300001G02RIK protein; 99.9 1.6E-27 5.6E-32 147.5 7.0 72 1-72 7-94 (105)
46 1wju_A NEDD8 ultimate buster-1 99.9 3E-27 1E-31 145.5 7.9 70 2-71 16-89 (100)
47 3l0w_B Monoubiquitinated proli 99.9 1.1E-26 3.8E-31 152.6 10.5 72 2-73 1-72 (169)
48 3rt3_B Ubiquitin-like protein 99.9 8.4E-27 2.9E-31 149.5 9.6 71 2-72 3-75 (159)
49 1yqb_A Ubiquilin 3; structural 99.9 9.4E-27 3.2E-31 141.6 8.8 72 1-73 22-93 (100)
50 1wx8_A Riken cDNA 4931431F19; 99.9 4.7E-27 1.6E-31 140.6 6.5 72 1-73 17-88 (96)
51 2klc_A Ubiquilin-1; ubiquitin- 99.9 5.1E-26 1.8E-30 138.4 11.2 72 1-73 25-96 (101)
52 2kdi_A Ubiquitin, vacuolar pro 99.9 4.2E-26 1.4E-30 141.6 10.3 72 2-73 10-81 (114)
53 2ojr_A Ubiquitin; lanthide-bin 99.9 8.1E-26 2.8E-30 139.2 11.4 73 1-73 35-107 (111)
54 3u30_A Ubiquitin, linear DI-ub 99.9 5.4E-26 1.8E-30 147.8 10.6 73 1-73 20-92 (172)
55 2dzj_A Synaptic glycoprotein S 99.9 9.7E-27 3.3E-31 139.3 6.0 70 1-70 10-85 (88)
56 1v5o_A 1700011N24RIK protein; 99.9 4.2E-26 1.4E-30 138.8 8.9 72 1-72 7-83 (102)
57 1j8c_A Ubiquitin-like protein 99.9 1.3E-25 4.4E-30 141.7 11.1 72 1-73 32-103 (125)
58 1wx7_A Ubiquilin 3; ubiquitin- 99.9 4.6E-26 1.6E-30 139.1 8.5 72 1-73 17-88 (106)
59 1we6_A Splicing factor, putati 99.9 5.4E-26 1.8E-30 139.9 8.7 73 1-73 27-103 (111)
60 3q3f_A Ribonuclease/ubiquitin 99.9 7.2E-26 2.5E-30 151.9 9.6 72 2-73 106-177 (189)
61 3u30_A Ubiquitin, linear DI-ub 99.9 1.5E-25 5.1E-30 145.8 9.2 72 2-73 97-168 (172)
62 3u5e_m 60S ribosomal protein L 99.9 1.9E-27 6.4E-32 149.8 0.0 72 2-73 1-72 (128)
63 3b08_A Polyubiquitin-C, ubiqui 99.9 5.2E-25 1.8E-29 138.7 10.3 72 2-73 1-72 (152)
64 3m63_B Ubiquitin domain-contai 99.9 4.8E-26 1.7E-30 138.8 5.2 70 2-72 29-98 (101)
65 1v5t_A 8430435I17RIK protein; 99.9 1.3E-25 4.4E-30 134.0 6.9 70 1-71 7-80 (90)
66 2daf_A FLJ35834 protein; hypot 99.9 4.4E-25 1.5E-29 139.2 9.5 70 2-71 16-86 (118)
67 1wia_A Hypothetical ubiquitin- 99.9 2.8E-25 9.6E-30 132.8 7.9 70 1-73 7-77 (95)
68 1wgg_A Ubiquitin carboxyl-term 99.9 1.2E-25 4.2E-30 136.0 6.4 69 1-71 7-76 (96)
69 3b08_A Polyubiquitin-C, ubiqui 99.9 1.2E-24 4E-29 137.2 10.9 72 2-73 77-148 (152)
70 3u5c_f 40S ribosomal protein S 99.9 7.3E-27 2.5E-31 152.1 0.0 72 2-73 1-72 (152)
71 1wxv_A BAG-family molecular ch 99.9 1.4E-24 4.8E-29 129.1 9.5 70 1-71 7-82 (92)
72 2kd0_A LRR repeats and ubiquit 99.9 1.2E-24 4.1E-29 128.7 8.6 69 4-72 14-82 (85)
73 2kjr_A CG11242; UBL, ubiquitin 99.9 1.3E-24 4.4E-29 131.9 8.9 71 1-71 15-93 (95)
74 1we7_A SF3A1 protein; structur 99.9 1.6E-24 5.4E-29 134.1 9.4 73 1-73 25-107 (115)
75 1x1m_A Ubiquitin-like protein 99.9 1.5E-24 5.2E-29 132.9 7.7 71 2-72 13-98 (107)
76 2dzm_A FAS-associated factor 1 99.9 1.1E-24 3.6E-29 133.7 6.6 70 2-72 9-80 (100)
77 4b6w_A Tubulin-specific chaper 99.9 7.2E-24 2.5E-28 126.5 8.2 70 2-71 3-81 (86)
78 1v86_A DNA segment, CHR 7, way 99.9 1.8E-24 6.2E-29 130.3 5.3 69 1-71 17-85 (95)
79 3ai5_A Yeast enhanced green fl 99.9 2.1E-23 7.1E-28 148.3 10.6 73 1-73 233-305 (307)
80 2kj6_A Tubulin folding cofacto 99.9 1.8E-23 6.1E-28 127.4 8.1 70 2-71 15-93 (97)
81 2xzm_9 RPS31E; ribosome, trans 99.9 2.7E-25 9.3E-30 149.4 0.0 67 2-73 1-67 (189)
82 1wf9_A NPL4 family protein; be 99.9 5.5E-24 1.9E-28 130.7 5.6 71 2-73 8-94 (107)
83 1v6e_A Cytoskeleton-associated 99.9 7.9E-23 2.7E-27 122.9 8.1 71 1-71 7-85 (95)
84 1oqy_A HHR23A, UV excision rep 99.9 4E-23 1.4E-27 149.5 7.3 72 1-72 7-82 (368)
85 2io1_B Small ubiquitin-related 99.9 1.4E-21 4.9E-26 118.2 10.1 72 2-73 8-79 (94)
86 1t0y_A Tubulin folding cofacto 99.9 9E-22 3.1E-26 123.3 8.6 71 1-71 6-84 (122)
87 1wm3_A Ubiquitin-like protein 99.8 1.3E-20 4.4E-25 108.6 9.6 70 2-71 2-71 (72)
88 2kzr_A Ubiquitin thioesterase 99.8 1.1E-21 3.9E-26 115.8 4.8 70 2-72 1-76 (86)
89 2io0_B Small ubiquitin-related 99.8 6.8E-20 2.3E-24 110.4 10.0 71 2-72 6-76 (91)
90 3shq_A UBLCP1; phosphatase, hy 99.8 7.7E-21 2.6E-25 135.2 6.6 70 1-71 5-77 (320)
91 3a4r_A Nfatc2-interacting prot 99.8 1.4E-19 4.7E-24 106.2 9.5 70 2-71 8-78 (79)
92 2d07_B Ubiquitin-like protein 99.8 2.4E-19 8.2E-24 108.1 10.4 72 2-73 18-89 (93)
93 1wz0_A Ubiquitin-like protein 99.8 3.9E-19 1.3E-23 109.4 7.8 71 2-72 25-95 (104)
94 2k8h_A Small ubiquitin protein 99.8 4.4E-19 1.5E-23 110.3 6.6 71 2-72 27-97 (110)
95 2eke_C Ubiquitin-like protein 99.8 2.3E-18 7.9E-23 106.5 9.7 70 2-72 32-101 (106)
96 1wjn_A Tubulin-folding protein 99.7 3.4E-17 1.1E-21 98.3 8.4 71 1-71 9-90 (97)
97 3kyd_D Small ubiquitin-related 99.6 7.8E-15 2.7E-19 91.9 10.3 71 2-72 41-111 (115)
98 3pge_A SUMO-modified prolifera 99.6 3.7E-14 1.3E-18 95.8 9.9 70 2-72 30-99 (200)
99 3tix_A Ubiquitin-like protein 99.4 4E-13 1.4E-17 91.0 8.1 70 2-72 58-127 (207)
100 4efo_A Serine/threonine-protei 99.3 5.4E-12 1.9E-16 76.6 6.5 44 9-52 21-64 (94)
101 2pjh_A Protein NPL4, nuclear p 99.3 1.1E-12 3.7E-17 77.0 2.7 70 1-71 4-78 (80)
102 3v7o_A Minor nucleoprotein VP3 99.3 3E-13 1E-17 92.6 0.0 70 2-72 22-91 (227)
103 3uf8_A Ubiquitin-like protein 99.2 1.9E-10 6.3E-15 77.3 9.1 70 2-72 22-91 (209)
104 3goe_A DNA repair protein RAD6 99.1 7.1E-10 2.4E-14 65.6 9.6 70 2-71 10-80 (82)
105 2jxx_A Nfatc2-interacting prot 99.1 6.2E-10 2.1E-14 67.7 8.6 70 2-71 26-96 (97)
106 3ix6_A TS, tsase, thymidylate 99.0 2.1E-11 7.1E-16 88.3 0.0 69 2-71 22-90 (360)
107 2kc2_A Talin-1, F1; FERM, adhe 98.9 2.7E-09 9.2E-14 67.8 6.5 69 4-72 14-121 (128)
108 4da1_A Protein phosphatase 1K, 98.9 1.8E-10 6.2E-15 82.5 0.0 69 2-71 31-99 (389)
109 2l76_A Nfatc2-interacting prot 98.7 1.5E-07 5E-12 57.2 9.0 69 2-71 22-90 (95)
110 2al3_A TUG long isoform; TUG U 98.6 3.8E-07 1.3E-11 54.8 8.2 71 2-72 10-80 (90)
111 2bps_A YUKD protein; ubiquitin 98.4 1.5E-06 5.3E-11 51.1 7.6 69 2-70 5-80 (81)
112 3qx1_A FAS-associated factor 1 98.3 5.9E-06 2E-10 47.9 8.3 69 2-71 8-81 (84)
113 4e71_A Plexin-B2, MM1; transme 98.0 2.5E-05 8.6E-10 48.4 6.3 62 10-71 22-108 (111)
114 3h6n_A Plexin-D1; structural g 97.9 0.00021 7E-09 45.2 10.3 63 10-72 15-103 (127)
115 2dzk_A UBX domain-containing p 97.9 0.00016 5.4E-09 44.0 8.8 71 2-72 14-89 (109)
116 2r2o_A Plexin-B1; effector dom 97.8 7.5E-05 2.6E-09 47.9 7.1 60 12-71 41-126 (138)
117 4a3p_A Ubiquitin carboxyl-term 97.8 0.00011 3.9E-09 49.2 7.4 61 13-73 141-208 (217)
118 1wj4_A KIAA0794 protein; UBX d 97.8 0.00019 6.6E-09 44.6 8.0 69 2-71 44-117 (124)
119 3jyu_A Ubiquitin carboxyl-term 97.7 0.00021 7.2E-09 48.3 8.3 61 13-73 153-220 (231)
120 3ivf_A Talin-1; FERM domain, c 97.6 0.00044 1.5E-08 48.8 9.1 61 11-71 12-82 (371)
121 4e74_A Plexin-A4; RBD, structu 97.4 0.0011 3.9E-08 41.2 8.1 61 11-71 26-112 (117)
122 2cr5_A Reproduction 8; UBX dom 97.4 0.0012 4.2E-08 39.9 8.0 70 2-72 24-97 (109)
123 3kuz_A Plexin-C1; structural g 97.3 0.0031 1E-07 39.8 8.8 60 12-71 39-124 (126)
124 1s3s_G P47 protein; AAA ATPase 97.3 0.0012 4E-08 41.1 6.8 67 3-69 54-124 (127)
125 1ryj_A Unknown; beta/alpha pro 97.1 0.011 3.7E-07 32.9 8.8 61 1-71 4-64 (70)
126 3hm6_X Plexin-B1; structural g 97.0 0.0046 1.6E-07 47.6 9.3 60 12-71 274-359 (644)
127 2l32_A Small archaeal modifier 96.9 0.0035 1.2E-07 35.7 5.7 60 2-71 1-60 (74)
128 3ig3_A Plxna3 protein; plexin 96.8 0.017 6E-07 44.4 10.7 69 3-71 235-332 (627)
129 2kvr_A Ubiquitin carboxyl-term 96.6 0.0028 9.7E-08 39.7 4.4 34 13-46 57-90 (130)
130 1tyg_B YJBS; alpha beta barrel 96.5 0.013 4.4E-07 34.4 6.6 61 1-71 20-81 (87)
131 2qjl_A URM1, ubiquitin-related 96.0 0.057 1.9E-06 31.6 7.5 68 1-71 1-93 (99)
132 1h4r_A Merlin; FERM, neurofibr 95.7 0.12 4.1E-06 35.3 9.2 71 2-73 23-98 (314)
133 1oey_A P67-PHOX, neutrophil cy 95.6 0.061 2.1E-06 31.4 6.4 44 3-48 7-50 (83)
134 2kl0_A Putative thiamin biosyn 95.6 0.029 1E-06 31.6 4.9 60 2-72 1-60 (73)
135 1ef1_A Moesin; membrane, FERM 95.6 0.1 3.5E-06 35.2 8.4 71 2-73 2-78 (294)
136 4eut_A Serine/threonine-protei 95.5 0.07 2.4E-06 36.9 7.7 45 10-54 320-365 (396)
137 1f0z_A THis protein; ubiquitin 95.4 0.064 2.2E-06 29.1 5.8 60 2-71 1-60 (66)
138 3rpf_C Molybdopterin convertin 95.4 0.091 3.1E-06 29.1 6.5 64 3-71 2-68 (74)
139 2inc_C TOUB protein; DIIRON, 4 95.1 0.24 8.2E-06 29.0 8.4 60 13-72 14-81 (83)
140 3qa8_A MGC80376 protein; kinas 95.1 0.019 6.6E-07 44.1 3.8 52 9-60 319-371 (676)
141 2daj_A KIAA0977 protein, COBL- 95.0 0.05 1.7E-06 32.4 4.8 63 2-64 11-76 (91)
142 3ge3_C Toluene-4-monooxygenase 94.9 0.15 5.1E-06 30.0 6.6 61 13-73 16-83 (84)
143 1vjk_A Molybdopterin convertin 94.9 0.27 9.2E-06 28.5 9.1 65 2-71 10-92 (98)
144 2ylm_A Ubiquitin carboxyl-term 94.9 0.031 1.1E-06 41.7 4.5 33 13-45 37-69 (530)
145 2k5p_A THis protein, thiamine- 94.9 0.044 1.5E-06 31.3 4.3 62 2-71 1-63 (78)
146 2juo_A GA-binding protein alph 94.8 0.14 4.7E-06 30.4 6.2 59 14-72 5-63 (89)
147 2i1j_A Moesin; FERM, coiled-co 94.7 0.27 9.4E-06 37.0 9.3 71 2-73 5-81 (575)
148 3dwg_C 9.5 kDa culture filtrat 94.7 0.3 1E-05 27.9 7.7 60 10-71 15-87 (93)
149 1wgr_A Growth factor receptor- 94.6 0.08 2.7E-06 31.9 5.1 52 8-59 16-74 (100)
150 1wgk_A Riken cDNA 2900073H19 p 94.4 0.38 1.3E-05 29.1 7.9 68 2-71 12-102 (114)
151 3po0_A Small archaeal modifier 94.2 0.38 1.3E-05 27.1 7.6 57 10-71 15-83 (89)
152 2kmc_A Fermitin family homolog 93.9 0.42 1.4E-05 29.0 7.2 69 2-70 20-96 (102)
153 1vd2_A Protein kinase C, IOTA 93.3 0.7 2.4E-05 27.1 7.6 43 5-47 8-52 (89)
154 1fm0_D Molybdopterin convertin 93.0 0.36 1.2E-05 26.6 5.6 56 10-71 14-75 (81)
155 3qij_A Protein 4.1; cytoskelet 92.8 0.27 9.1E-06 33.7 5.8 60 2-61 18-83 (296)
156 2q5w_D Molybdopterin convertin 92.6 0.42 1.4E-05 26.1 5.4 54 12-71 16-71 (77)
157 2ylm_A Ubiquitin carboxyl-term 92.4 0.12 4.3E-06 38.4 3.8 68 2-69 131-213 (530)
158 2l52_A Methanosarcina acetivor 92.4 0.42 1.4E-05 27.9 5.5 67 1-71 3-93 (99)
159 3ivf_A Talin-1; FERM domain, c 92.2 1.3 4.6E-05 30.8 8.8 69 2-70 86-164 (371)
160 4gmv_A RAS-associated and plec 92.2 0.33 1.1E-05 33.8 5.6 56 2-59 34-96 (281)
161 2kmm_A Guanosine-3',5'-BIS(dip 92.1 0.42 1.4E-05 25.7 5.0 61 2-71 1-61 (73)
162 2cu3_A Unknown function protei 92.0 0.78 2.7E-05 24.5 6.5 54 10-71 5-58 (64)
163 2bt6_A Adrenodoxin 1; rutheniu 90.0 0.45 1.5E-05 27.8 4.0 36 1-40 6-41 (108)
164 2hj1_A Hypothetical protein; s 89.0 1.3 4.6E-05 26.1 5.5 66 1-71 12-83 (97)
165 2k9x_A Tburm1, uncharacterized 88.8 0.11 3.7E-06 31.5 0.6 67 2-70 5-95 (110)
166 1rws_A Hypothetical protein PF 88.6 0.15 5.3E-06 28.5 1.1 47 15-70 24-70 (77)
167 3au4_A Myosin-X; protein-prote 88.6 1.1 3.8E-05 32.9 6.0 45 2-46 217-263 (555)
168 3hk0_A Growth factor receptor- 88.3 1.1 3.8E-05 30.6 5.5 55 2-58 11-72 (256)
169 2y5c_A Adrenodoxin-like protei 88.0 0.76 2.6E-05 26.9 4.0 27 1-27 5-31 (109)
170 2g1e_A Hypothetical protein TA 87.8 2.3 7.8E-05 23.6 6.6 55 16-71 19-84 (90)
171 3hui_A Ferredoxin; cytochrome 87.4 0.82 2.8E-05 28.0 4.0 34 1-38 21-54 (126)
172 3tca_A Amyloid beta A4 precurs 87.2 3.2 0.00011 27.3 7.1 49 8-56 41-96 (291)
173 1y8x_B Ubiquitin-activating en 87.0 2 6.9E-05 25.5 5.5 60 11-70 4-81 (98)
174 3onh_A Ubiquitin-activating en 86.9 1.9 6.6E-05 26.9 5.5 50 21-71 19-77 (127)
175 2lgx_A Fermitin family homolog 86.2 0.3 1E-05 30.0 1.5 66 3-69 28-98 (112)
176 3pvl_A Myosin VIIA isoform 1; 84.8 2.2 7.7E-05 32.5 6.0 38 2-39 264-301 (655)
177 1q1o_A Cell division control p 84.5 1.3 4.5E-05 26.5 3.8 38 11-48 22-64 (98)
178 1ip9_A BEM1 protein; ubiquitin 82.8 5.2 0.00018 23.3 6.1 29 10-38 20-48 (85)
179 1jq4_A Methane monooxygenase c 82.0 1.5 5.1E-05 25.0 3.2 37 1-41 4-40 (98)
180 2wlb_A ETP1-FD, electron trans 81.4 3.7 0.00013 23.5 4.9 35 1-39 3-37 (103)
181 2c7h_A RBBP6, retinoblastoma-b 81.2 6.1 0.00021 23.0 6.6 44 1-44 6-51 (86)
182 3lxf_A Ferredoxin; iron, iron- 79.6 3.3 0.00011 24.0 4.3 32 3-38 2-33 (104)
183 1frr_A Ferredoxin I; electron 78.3 3.4 0.00012 23.1 3.9 35 1-40 1-35 (95)
184 1pqs_A Cell division control p 77.6 2.5 8.7E-05 24.0 3.2 36 13-48 3-43 (77)
185 3hvz_A Uncharacterized protein 76.6 7.9 0.00027 21.7 6.4 60 3-71 7-66 (78)
186 3ah7_A [2Fe-2S]ferredoxin; [2F 74.6 2.9 0.0001 24.3 3.0 35 1-39 1-38 (113)
187 1wri_A Ferredoxin II, ferredox 71.2 6.6 0.00023 22.0 3.9 28 1-29 1-28 (93)
188 1i7h_A Ferredoxin; 2Fe-2S,elec 71.0 3.7 0.00013 23.9 2.9 27 1-27 1-30 (111)
189 2al6_A Focal adhesion kinase 1 70.9 7.3 0.00025 27.3 4.8 54 6-59 12-76 (375)
190 4eku_A Protein-tyrosine kinase 70.7 8.7 0.0003 27.4 5.3 51 9-59 35-96 (392)
191 1wxm_A A-RAF proto-oncogene se 70.6 13 0.00045 21.6 6.2 48 9-56 15-65 (86)
192 3u52_E Phenol hydroxylase comp 70.2 16 0.00056 22.5 7.3 59 12-70 38-106 (119)
193 2nvu_B Maltose binding protein 69.2 23 0.00079 27.0 7.6 59 13-71 713-789 (805)
194 2v1y_A Phosphatidylinositol-4, 69.2 16 0.00054 22.0 5.5 30 5-34 23-52 (108)
195 3n9z_C Adrenodoxin; cytochrome 69.1 0.98 3.4E-05 27.5 0.0 27 1-27 5-31 (123)
196 1xlq_A Putidaredoxin, PDX; [2F 67.8 9.8 0.00033 21.7 4.2 25 3-27 2-26 (106)
197 1uwm_A Ferredoxin VI, FDVI; el 66.1 12 0.0004 21.4 4.3 32 3-38 2-33 (106)
198 2l05_A Serine/threonine-protei 64.9 19 0.00066 21.3 7.0 48 9-56 25-75 (95)
199 1rm6_C 4-hydroxybenzoyl-COA re 64.8 5.9 0.0002 25.0 3.1 21 10-30 10-30 (161)
200 1krh_A Benzoate 1,2-dioxygenas 64.7 12 0.0004 25.2 4.7 28 1-28 3-30 (338)
201 3r8s_T 50S ribosomal protein L 61.9 21 0.00072 20.7 5.8 40 11-50 27-67 (93)
202 1vq8_S 50S ribosomal protein L 61.8 15 0.00051 21.1 4.2 34 11-44 22-55 (85)
203 3h9d_A ATG8, microtubule-assoc 60.5 18 0.00063 21.9 4.6 43 16-58 52-95 (119)
204 4dxa_B KREV interaction trappe 60.3 12 0.0004 25.5 4.1 35 2-40 6-42 (322)
205 2zjd_A Microtubule-associated 60.0 20 0.00069 22.0 4.8 57 15-72 56-118 (130)
206 3kdv_A DDRB, DNA damage respon 59.6 17 0.00058 23.7 4.5 30 1-30 7-36 (184)
207 1n62_A Carbon monoxide dehydro 59.2 12 0.00042 23.8 3.8 27 2-29 4-30 (166)
208 2dls_A PDZ-rhogef, RHO guanine 59.2 7.5 0.00025 21.4 2.5 41 32-72 42-83 (93)
209 3he4_B Synzip5; heterodimeric 58.4 7.1 0.00024 19.8 2.1 16 21-36 2-17 (46)
210 1ffv_A CUTS, iron-sulfur prote 57.9 13 0.00046 23.5 3.8 21 9-29 10-30 (163)
211 2i4s_A General secretion pathw 57.8 15 0.00051 20.8 3.7 42 31-72 49-92 (105)
212 1a70_A Ferredoxin; iron-sulfur 57.2 15 0.00051 20.6 3.6 34 2-40 3-36 (97)
213 3hrd_D Nicotinate dehydrogenas 56.3 16 0.00056 23.1 4.0 26 2-28 4-29 (160)
214 4gdk_A Ubiquitin-like protein 56.3 19 0.00065 20.7 4.0 56 15-72 23-84 (91)
215 1czp_A Ferredoxin I; [2Fe-2S] 55.9 22 0.00076 19.9 4.3 35 2-40 3-38 (98)
216 3tve_T 50S ribosomal protein L 55.7 28 0.00095 20.2 5.5 39 11-49 21-60 (92)
217 1wgy_A RAP guanine nucleotide 55.7 23 0.0008 21.1 4.4 62 10-71 18-84 (104)
218 1awd_A Ferredoxin; electron tr 55.3 13 0.00045 20.7 3.2 25 3-28 2-26 (94)
219 4dxe_H ACP, acyl carrier prote 55.1 11 0.00038 21.7 2.9 38 16-62 20-58 (101)
220 4ajy_C Transcription elongatio 53.2 8.5 0.00029 21.8 2.1 33 1-33 1-33 (97)
221 3rui_B Autophagy-related prote 52.3 30 0.001 20.8 4.6 43 16-58 51-94 (118)
222 2lu7_A Obscurin-like protein 1 52.2 26 0.00088 18.8 5.3 36 6-56 6-41 (84)
223 2zjr_Q 50S ribosomal protein L 51.9 24 0.00084 20.5 4.0 36 13-48 24-60 (95)
224 2pkt_A PDZ and LIM domain prot 51.5 18 0.00063 19.5 3.3 42 31-72 39-82 (91)
225 2vq5_A S-norcoclaurine synthas 51.0 5.2 0.00018 26.3 1.0 18 40-57 3-20 (201)
226 3m95_A Autophagy related prote 51.0 24 0.00082 21.6 4.0 43 16-58 57-100 (125)
227 3j21_T 50S ribosomal protein L 51.0 29 0.00098 19.9 4.1 34 11-44 23-56 (86)
228 1v8c_A MOAD related protein; r 50.6 44 0.0015 21.0 6.7 55 15-71 17-81 (168)
229 4eiv_A Deoxyribose-phosphate a 50.4 16 0.00054 25.7 3.4 25 5-34 182-206 (297)
230 2i6v_A General secretion pathw 49.4 21 0.00071 19.3 3.3 58 10-72 15-74 (87)
231 1b9r_A Protein (terpredoxin); 49.2 10 0.00034 21.6 2.0 32 3-38 2-33 (105)
232 3eud_A Protein SHQ1; CS domain 47.9 14 0.00047 22.6 2.5 31 36-66 57-87 (115)
233 2ktr_A Sequestosome-1; autopha 47.8 35 0.0012 20.7 4.4 47 1-47 18-83 (117)
234 1uit_A Human discs large 5 pro 47.5 31 0.0011 19.5 4.0 42 31-72 54-97 (117)
235 1t3q_A Quinoline 2-oxidoreduct 47.2 25 0.00087 22.0 3.8 26 3-29 11-36 (168)
236 3cjl_A Domain of unknown funct 47.1 22 0.00075 20.7 3.2 39 3-41 7-47 (88)
237 1rrb_A RAF-1 RBD, RAF proto-on 46.6 46 0.0016 20.0 6.1 37 9-45 26-62 (107)
238 2he4_A Na(+)/H(+) exchange reg 46.1 27 0.00092 18.7 3.5 42 31-72 40-83 (90)
239 2r2q_A Gamma-aminobutyric acid 45.1 29 0.001 20.4 3.7 56 16-72 48-108 (110)
240 3ejb_A Acyl carrier protein; p 44.5 23 0.0008 19.9 3.1 40 15-63 15-55 (97)
241 3kt9_A Aprataxin; FHA domain, 42.9 13 0.00044 22.0 1.8 14 59-72 78-91 (102)
242 2brf_A Bifunctional polynucleo 42.8 10 0.00035 22.8 1.4 24 46-72 74-97 (110)
243 2vsp_A PDZ domain-containing p 42.6 26 0.00089 18.9 3.0 43 30-72 38-82 (91)
244 2w4f_A Protein LAP4; structura 42.5 23 0.0008 19.2 2.8 42 31-72 46-89 (97)
245 1eo6_A GATE-16, golgi-associat 42.4 34 0.0012 20.4 3.7 56 16-72 49-109 (117)
246 1dd4_C 50S ribosomal protein L 41.4 24 0.00083 17.5 2.5 20 21-40 12-34 (40)
247 1iue_A Ferredoxin; electron tr 40.7 36 0.0012 19.0 3.5 26 2-28 3-28 (98)
248 2pzd_A Serine protease HTRA2; 40.3 9.8 0.00033 21.6 1.0 26 32-57 48-73 (113)
249 2v90_A PDZ domain-containing p 40.0 26 0.00089 19.0 2.8 43 30-72 41-85 (96)
250 1m5z_A GRIP, AMPA receptor int 39.6 24 0.00081 19.0 2.5 43 30-72 43-87 (91)
251 3kxt_A Chromatin protein CREN7 39.6 21 0.00071 19.2 2.1 16 1-16 1-16 (56)
252 2uzc_A Human pdlim5, PDZ and L 39.3 32 0.0011 18.3 3.0 42 31-72 39-82 (88)
253 3khf_A Microtubule-associated 39.2 18 0.00062 19.9 2.0 43 30-72 45-89 (99)
254 2y3a_A Phosphatidylinositol-4, 39.1 60 0.002 26.5 5.6 31 4-34 54-84 (1092)
255 1fs1_B SKP1, cyclin A/CDK2-ass 38.8 35 0.0012 20.5 3.4 33 1-33 1-33 (141)
256 1q7x_A PDZ2B domain of PTP-BAS 38.2 29 0.001 19.3 2.8 43 30-72 53-98 (108)
257 2zkr_s 60S ribosomal protein L 37.9 49 0.0017 21.1 4.1 38 11-48 93-131 (156)
258 1rgw_A ZAsp protein; PDZ, cyph 37.5 27 0.00092 18.4 2.5 24 31-54 37-60 (85)
259 2fe3_A Peroxide operon regulat 37.1 29 0.001 20.8 2.9 39 9-50 98-136 (145)
260 1mzb_A Ferric uptake regulatio 36.9 29 0.00098 20.6 2.8 38 9-49 96-133 (136)
261 3ngh_A PDZ domain-containing p 36.7 31 0.0011 19.1 2.8 43 30-72 37-81 (106)
262 2lvc_A Obscurin-like protein 1 36.4 52 0.0018 17.7 4.2 37 4-55 14-50 (91)
263 1w9e_A Syntenin 1; cell adhesi 36.0 29 0.001 20.9 2.8 42 31-72 39-83 (166)
264 1x5q_A LAP4 protein; PDZ domai 35.9 29 0.00099 19.4 2.6 42 31-72 58-101 (110)
265 4ets_A Ferric uptake regulatio 35.9 40 0.0014 20.8 3.4 38 10-50 113-150 (162)
266 1d5g_A Human phosphatase HPTP1 35.8 30 0.001 18.7 2.6 43 30-72 44-89 (96)
267 1ihj_A INAD; intermolecular di 35.1 30 0.001 18.8 2.5 42 31-72 49-93 (98)
268 1wf7_A Enigma homologue protei 34.9 33 0.0011 18.9 2.7 43 30-72 40-84 (103)
269 2eel_A Cell death activator CI 34.7 49 0.0017 19.2 3.4 34 22-55 28-63 (91)
270 3tsv_A Tight junction protein 34.4 36 0.0012 19.8 2.9 43 30-72 62-108 (124)
271 3ny5_A Serine/threonine-protei 34.1 73 0.0025 18.8 9.0 38 9-46 21-58 (96)
272 2eeh_A PDZ domain-containing p 34.0 27 0.00092 19.2 2.2 41 31-72 48-90 (100)
273 1vcv_A Probable deoxyribose-ph 34.0 45 0.0015 22.1 3.6 44 5-48 144-192 (226)
274 2o2t_A Multiple PDZ domain pro 33.7 24 0.00084 20.0 2.0 43 30-72 60-106 (117)
275 3u7z_A Putative metal binding 33.6 74 0.0025 18.6 7.1 69 2-72 9-97 (101)
276 2j58_A WZA, outer membrane lip 33.5 1.2E+02 0.0042 21.1 6.8 65 4-71 153-230 (359)
277 1n7e_A AMPA receptor interacti 33.5 41 0.0014 18.3 2.9 42 30-72 41-86 (97)
278 1xao_A YDJ1, mitochondrial pro 33.5 52 0.0018 19.4 3.5 19 3-21 25-43 (121)
279 1vku_A Acyl carrier protein; T 33.4 37 0.0012 19.4 2.7 33 21-62 16-48 (100)
280 3r12_A Deoxyribose-phosphate a 33.3 32 0.0011 23.5 2.8 24 5-33 189-212 (260)
281 3lfh_A Manxa, phosphotransfera 33.0 73 0.0025 19.3 4.2 39 12-50 31-75 (144)
282 3mwm_A ZUR, putative metal upt 32.7 41 0.0014 20.1 3.0 37 10-49 93-129 (139)
283 2rcz_A Tight junction protein 32.7 45 0.0015 17.1 2.9 27 31-57 33-62 (81)
284 2q3g_A PDZ and LIM domain prot 32.3 41 0.0014 17.9 2.7 42 31-72 39-82 (89)
285 2vwr_A Ligand of NUMB protein 32.2 28 0.00094 18.9 2.0 43 30-72 40-85 (95)
286 1c1y_B Proto-onkogene serine/t 32.0 72 0.0024 18.0 8.6 37 9-45 9-45 (77)
287 1hmj_A RPB5, protein (subunit 32.0 47 0.0016 18.8 3.0 41 26-71 18-58 (78)
288 4a17_R RPL23A, 60S ribosomal p 32.0 72 0.0025 20.2 4.1 34 11-44 87-120 (150)
289 3u5e_X 60S ribosomal protein L 31.9 70 0.0024 20.0 4.0 33 12-44 80-112 (142)
290 2jil_A GRIP1 protein, glutamat 31.5 30 0.001 18.8 2.1 43 30-72 43-88 (97)
291 2a4a_A Deoxyribose-phosphate a 30.9 56 0.0019 22.5 3.7 25 5-34 188-212 (281)
292 1or5_A Acyl carrier protein; A 30.9 40 0.0014 17.7 2.5 19 22-40 4-22 (83)
293 1l5p_A Ferredoxin; [2Fe-2S] cl 30.7 36 0.0012 18.8 2.3 23 4-27 3-25 (93)
294 3av3_A Phosphoribosylglycinami 30.6 57 0.0019 21.1 3.6 22 14-35 155-176 (212)
295 1wfy_A Regulator of G-protein 30.5 17 0.00058 21.9 0.9 41 9-49 25-65 (104)
296 3caf_A Fibroblast growth facto 30.2 57 0.0019 16.9 3.1 33 10-56 22-54 (100)
297 4h40_A Putative cell adhesion 30.1 36 0.0012 24.1 2.6 20 53-72 39-61 (327)
298 2ywr_A Phosphoribosylglycinami 30.1 58 0.002 21.0 3.6 21 14-34 153-173 (216)
299 3kcq_A Phosphoribosylglycinami 30.1 58 0.002 21.3 3.6 22 14-35 155-176 (215)
300 1p1x_A Deoxyribose-phosphate a 30.0 41 0.0014 22.8 2.9 22 5-31 166-187 (260)
301 1hfo_A Migration inhibitory fa 30.0 71 0.0024 17.9 3.6 24 26-49 78-101 (113)
302 2kv8_A RGS12, regulator of G-p 29.9 31 0.0011 18.2 1.9 24 31-54 35-58 (83)
303 2i1n_A Discs, large homolog 3; 29.9 33 0.0011 18.8 2.1 43 30-72 45-90 (102)
304 3hhm_A Phosphatidylinositol-4, 29.9 1E+02 0.0035 25.3 5.5 30 6-35 47-76 (1091)
305 1uiz_A MIF, macrophage migrati 29.9 71 0.0024 18.0 3.6 24 26-49 79-102 (115)
306 2l97_A HTRA, putative serine p 29.7 45 0.0015 19.6 2.8 38 35-72 72-111 (134)
307 1ub3_A Aldolase protein; schif 29.7 59 0.002 21.3 3.6 37 5-49 149-185 (220)
308 1j1v_A Chromosomal replication 29.7 26 0.00088 20.0 1.6 20 23-42 2-21 (94)
309 3auf_A Glycinamide ribonucleot 29.6 59 0.002 21.4 3.6 22 14-35 174-195 (229)
310 1pdo_A Mannose permease; phosp 29.4 91 0.0031 18.4 4.8 40 12-51 29-73 (135)
311 3knb_B Obscurin-like protein 1 29.3 35 0.0012 18.9 2.2 32 10-55 27-58 (107)
312 1frd_A Heterocyst [2Fe-2S] fer 29.3 76 0.0026 17.4 3.7 35 2-40 3-38 (98)
313 3da8_A Probable 5'-phosphoribo 29.1 62 0.0021 21.2 3.6 22 14-35 162-183 (215)
314 1eik_A RNA polymerase subunit 29.0 41 0.0014 19.0 2.3 40 27-71 21-60 (77)
315 4ds3_A Phosphoribosylglycinami 28.9 63 0.0022 21.0 3.6 22 14-35 159-180 (209)
316 2o03_A Probable zinc uptake re 28.8 63 0.0022 18.9 3.3 38 9-49 88-125 (131)
317 3ghd_A A cystathionine beta-sy 28.7 64 0.0022 16.8 3.1 20 15-34 2-21 (70)
318 2v94_A RPS24, 30S ribosomal pr 28.7 88 0.003 18.5 3.9 35 12-47 25-63 (107)
319 3qe1_A Sorting nexin-27, G pro 28.6 33 0.0011 19.0 1.9 43 30-72 54-98 (107)
320 1meo_A Phosophoribosylglycinam 28.5 65 0.0022 20.8 3.6 22 14-35 152-173 (209)
321 1uf1_A KIAA1526 protein; PDZ d 28.4 69 0.0024 18.3 3.4 42 31-72 58-100 (128)
322 2l66_A SSO7C4, transcriptional 28.3 38 0.0013 17.1 2.0 19 54-72 18-36 (53)
323 3p9x_A Phosphoribosylglycinami 28.3 65 0.0022 21.0 3.6 22 14-35 154-175 (211)
324 2xcz_A Possible ATLS1-like lig 28.0 80 0.0027 17.8 3.6 26 24-49 77-102 (115)
325 1v5l_A PDZ and LIM domain 3; a 28.0 39 0.0013 18.7 2.2 42 31-72 41-84 (103)
326 3oa3_A Aldolase; structural ge 28.0 90 0.0031 21.6 4.4 25 5-34 204-228 (288)
327 2l9f_A CALE8, meacp; transfera 27.9 52 0.0018 19.4 2.8 21 21-41 13-33 (102)
328 1yfb_A Transition state regula 27.9 35 0.0012 18.0 1.8 14 57-70 31-44 (59)
329 1ltr_D ETB-R2, heat-labIle ent 27.8 43 0.0015 19.9 2.3 39 6-44 40-87 (113)
330 1jkx_A GART;, phosphoribosylgl 27.8 68 0.0023 20.7 3.6 21 14-34 152-172 (212)
331 1uez_A KIAA1526 protein; PDZ d 27.7 39 0.0013 18.5 2.2 41 31-71 47-88 (101)
332 3djh_A Macrophage migration in 27.7 81 0.0028 17.9 3.6 24 25-48 77-100 (114)
333 2xig_A Ferric uptake regulatio 27.7 74 0.0025 19.1 3.6 39 9-50 104-142 (150)
334 3pvv_A Chromosomal replication 27.6 29 0.001 20.2 1.6 21 21-41 4-24 (101)
335 1ywx_A 30S ribosomal protein S 27.5 98 0.0034 18.2 4.0 28 19-47 27-54 (102)
336 4dh4_A MIF; trimer, isomerase; 27.4 83 0.0028 17.8 3.6 24 25-48 78-101 (114)
337 1xn9_A 30S ribosomal protein S 27.4 98 0.0034 18.1 4.1 26 19-44 27-52 (101)
338 2dhz_A RAP guanine nucleotide 27.3 85 0.0029 19.1 3.7 41 10-50 18-67 (120)
339 3tqr_A Phosphoribosylglycinami 27.2 70 0.0024 20.9 3.6 22 14-35 156-177 (215)
340 3i4w_A Disks large homolog 4; 27.2 49 0.0017 18.0 2.5 42 31-72 47-91 (104)
341 1f2r_I Inhibitor of caspase-ac 27.1 63 0.0022 19.1 3.0 40 15-55 31-74 (100)
342 1yj5_C 5' polynucleotide kinas 26.9 24 0.00081 22.3 1.2 25 45-72 73-97 (143)
343 2os5_A Acemif; macrophage migr 26.9 85 0.0029 17.9 3.6 25 26-50 79-103 (119)
344 2j0j_A Focal adhesion kinase 1 26.8 1.9E+02 0.0066 21.3 7.7 47 13-59 23-76 (656)
345 2wkb_A Macrophage migration in 26.7 81 0.0028 18.2 3.6 29 23-51 76-104 (125)
346 3cyy_A Tight junction protein 26.7 61 0.0021 17.1 2.8 22 31-52 35-57 (92)
347 3o1l_A Formyltetrahydrofolate 26.3 70 0.0024 22.0 3.6 22 14-35 254-275 (302)
348 2w57_A Ferric uptake regulatio 26.3 1.1E+02 0.0038 18.3 4.4 39 9-50 95-133 (150)
349 2idl_A Hypothetical protein; c 26.1 77 0.0026 18.7 3.4 19 1-19 4-23 (117)
350 1zrj_A E1B-55KDA-associated pr 26.1 37 0.0013 17.5 1.7 19 20-39 11-29 (50)
351 3b64_A Macrophage migration in 25.9 92 0.0031 17.5 3.6 25 24-48 77-101 (112)
352 3lou_A Formyltetrahydrofolate 25.9 72 0.0025 21.8 3.6 22 14-35 244-265 (292)
353 1h1j_S THO1 protein; SAP domai 25.9 37 0.0013 17.6 1.7 19 20-39 6-24 (51)
354 2p92_A Hypothetical protein; u 25.7 77 0.0026 19.1 3.4 19 1-19 21-40 (126)
355 4a6q_A Histone deacetylase com 25.6 53 0.0018 20.6 2.6 58 14-71 56-136 (143)
356 3chb_D Cholera toxin; toxin/re 25.5 1.1E+02 0.0037 17.9 3.9 39 5-43 40-87 (104)
357 3n0v_A Formyltetrahydrofolate 25.4 75 0.0026 21.6 3.6 22 14-35 239-260 (286)
358 3nrb_A Formyltetrahydrofolate 25.2 76 0.0026 21.6 3.6 22 14-35 238-259 (287)
359 1tt5_B Ubiquitin-activating en 25.0 21 0.00073 25.8 0.8 57 14-70 343-417 (434)
360 2k6p_A Uncharacterized protein 24.9 8.9 0.0003 21.4 -1.0 32 41-72 19-51 (92)
361 3obi_A Formyltetrahydrofolate 24.7 79 0.0027 21.5 3.6 22 14-35 239-260 (288)
362 3ngj_A Deoxyribose-phosphate a 24.7 49 0.0017 22.3 2.5 23 5-32 173-195 (239)
363 2fe5_A Presynaptic protein SAP 24.6 75 0.0026 16.9 2.9 42 31-72 45-89 (94)
364 3iz5_X 60S ribosomal protein L 24.6 80 0.0027 20.0 3.3 33 12-44 90-122 (152)
365 2p3w_A Probable serine proteas 24.5 31 0.0011 19.4 1.3 39 32-71 48-86 (112)
366 1kf6_B Fumarate reductase iron 24.5 1.2E+02 0.004 19.4 4.3 21 12-32 24-44 (243)
367 3f5r_A FACT complex subunit PO 24.3 1.5E+02 0.0053 19.3 5.1 42 3-44 86-127 (191)
368 1vlb_A Aldehyde oxidoreductase 24.2 82 0.0028 24.9 4.0 56 1-57 1-63 (907)
369 2iwn_A Multiple PDZ domain pro 24.2 88 0.003 16.5 3.8 42 31-72 45-89 (97)
370 2xzm_P RPS24E; ribosome, trans 24.2 1.1E+02 0.0038 19.3 3.9 33 12-44 19-55 (149)
371 2fnj_C Transcription elongatio 24.1 44 0.0015 18.8 1.9 30 4-33 3-32 (96)
372 1yb3_A Hypothetical protein; s 24.0 58 0.002 21.2 2.6 29 6-34 137-165 (175)
373 3h43_A Proteasome-activating n 23.9 34 0.0012 19.3 1.4 26 3-28 32-57 (85)
374 1f80_D Acyl carrier protein; t 23.8 55 0.0019 17.0 2.2 19 22-40 7-25 (81)
375 3kan_A D-dopachrome tautomeras 23.7 1E+02 0.0035 17.7 3.6 24 25-48 78-101 (117)
376 1vb7_A PDZ and LIM domain 2; P 23.7 54 0.0018 17.7 2.2 23 32-54 43-65 (94)
377 2do1_A Nuclear protein HCC-1; 23.6 60 0.0021 17.0 2.3 19 20-39 11-29 (55)
378 1tp5_A Presynaptic density pro 23.4 92 0.0032 17.4 3.3 42 31-72 50-94 (119)
379 1ujd_A KIAA0559 protein; PDZ d 23.4 58 0.002 18.5 2.4 43 30-72 60-105 (117)
380 1y8t_A Hypothetical protein RV 23.4 63 0.0022 21.6 2.9 25 33-57 256-280 (324)
381 3ge3_E Toluene-4-monooxygenase 23.3 35 0.0012 20.2 1.4 30 28-57 61-95 (103)
382 2pa1_A PDZ and LIM domain prot 23.3 42 0.0014 17.8 1.7 22 32-53 39-60 (87)
383 3fwu_A Macrophage migration in 23.2 1E+02 0.0036 18.3 3.6 24 25-48 99-122 (133)
384 2g1d_A 30S ribosomal protein S 23.1 59 0.002 19.0 2.4 31 12-42 17-51 (98)
385 1mfg_A ERB-B2 interacting prot 23.1 35 0.0012 18.4 1.3 40 32-72 48-89 (95)
386 2eeg_A PDZ and LIM domain prot 23.1 57 0.0019 17.6 2.2 24 31-54 44-67 (94)
387 3fwt_A Macrophage migration in 23.0 1.1E+02 0.0037 18.2 3.6 24 25-48 99-122 (133)
388 2w82_A ORF18, ARDA; DNA mimic, 22.9 1.2E+02 0.0041 18.7 4.0 44 2-49 4-51 (165)
389 1ibx_B Chimera of IGG binding 22.3 43 0.0015 21.2 1.7 34 22-55 82-119 (145)
390 3t5s_A Gilaa.00834.A, macropha 22.1 1.1E+02 0.0039 18.2 3.6 27 23-49 97-123 (135)
391 2byg_A Channel associated prot 22.1 70 0.0024 18.2 2.6 43 30-72 65-110 (117)
392 3pv2_A DEGQ; trypsin fold, PDZ 21.9 1E+02 0.0035 22.0 3.8 42 31-72 294-337 (451)
393 2qt5_A Glutamate receptor-inte 21.9 96 0.0033 19.0 3.4 42 31-72 45-89 (200)
394 2lna_A AFG3-like protein 2; st 21.9 1.2E+02 0.0042 17.3 3.9 29 14-42 60-88 (99)
395 2opg_A Multiple PDZ domain pro 21.9 90 0.0031 16.7 2.9 24 31-54 42-66 (98)
396 2jik_A Synaptojanin-2 binding 21.9 1.1E+02 0.0036 16.6 3.4 42 31-72 49-93 (101)
397 2f5y_A Regulator of G-protein 21.6 74 0.0025 17.0 2.5 42 31-72 36-79 (91)
398 2kjp_A Uncharacterized protein 21.6 23 0.00079 19.6 0.3 18 36-53 17-34 (91)
399 1um7_A Synapse-associated prot 21.5 70 0.0024 17.7 2.4 43 30-72 50-95 (113)
400 1n7t_A 99-MER peptide of densi 21.4 28 0.00096 19.2 0.7 40 32-72 56-97 (103)
401 2djt_A Unnamed protein product 21.3 65 0.0022 17.6 2.3 43 30-72 49-94 (104)
402 2qg1_A Multiple PDZ domain pro 21.2 73 0.0025 16.9 2.4 43 30-72 40-85 (92)
403 2edz_A PDZ domain-containing p 21.2 38 0.0013 19.1 1.2 42 31-72 50-93 (114)
404 4hti_A Receptor-type tyrosine- 21.1 1.1E+02 0.0039 17.9 3.4 30 10-39 50-89 (99)
405 2vz5_A TAX1-binding protein 3; 21.1 1.1E+02 0.0039 18.0 3.5 42 31-72 76-120 (139)
406 3k1r_A Harmonin; protein-prote 21.1 72 0.0025 19.7 2.7 42 30-72 121-164 (192)
407 3b76_A E3 ubiquitin-protein li 21.1 83 0.0028 18.1 2.8 42 30-71 64-108 (118)
408 3lcn_C MRNA transport factor G 21.1 36 0.0012 15.8 0.9 15 21-35 5-19 (29)
409 2lqo_A Putative glutaredoxin R 21.0 1.2E+02 0.0041 16.8 3.7 17 23-39 71-87 (92)
410 2fcf_A Multiple PDZ domain pro 21.0 51 0.0018 18.0 1.8 23 31-53 51-74 (103)
411 3stj_A Protease DEGQ; serine p 20.9 88 0.003 21.5 3.2 41 32-72 276-318 (345)
412 2awx_A Synapse associated prot 20.7 97 0.0033 17.0 3.0 43 30-72 44-89 (105)
413 1wfv_A Membrane associated gua 20.7 39 0.0013 18.5 1.2 42 30-71 47-91 (103)
414 1wxa_A Afadin, AF-6 protein; R 20.7 1.4E+02 0.0048 17.5 4.1 33 14-46 26-61 (116)
415 3gsl_A Disks large homolog 4; 20.7 1.4E+02 0.0049 17.7 4.0 43 30-72 46-91 (196)
416 1b44_D ETB-POL, protein (B-POL 20.4 54 0.0018 19.9 1.8 39 6-44 40-87 (129)
417 2ns5_A Partitioning-defective 20.4 1.3E+02 0.0045 17.1 7.0 57 2-59 3-69 (85)
418 3fio_A A cystathionine beta-sy 20.4 90 0.0031 15.2 3.1 19 16-34 3-21 (70)
419 1e0g_A Membrane-bound lytic mu 20.4 60 0.002 15.1 1.7 42 15-70 4-45 (48)
420 3axa_A Afadin, nectin-3, prote 20.3 1E+02 0.0034 16.9 2.9 43 30-72 49-94 (106)
421 1wha_A KIAA0147 protein, scrib 20.3 56 0.0019 18.0 1.8 23 31-53 50-73 (105)
422 3ipr_A PTS system, IIA compone 20.0 1.5E+02 0.0053 17.8 4.0 40 12-51 29-73 (150)
No 1
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=100.00 E-value=3.5e-37 Score=187.93 Aligned_cols=72 Identities=60% Similarity=0.959 Sum_probs=71.6
Q ss_pred CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEe
Q psy4181 1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYY 72 (73)
Q Consensus 1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~ 72 (73)
|||||||+++|++++++|+|+|||++||++|++++|+||++|||+|+|++|+|+.||++|+|++|+||||+|
T Consensus 21 mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~~ 92 (93)
T 3plu_A 21 MIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY 92 (93)
T ss_dssp EEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred eEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEEe
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999
No 2
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=100.00 E-value=1.9e-34 Score=177.64 Aligned_cols=73 Identities=89% Similarity=1.456 Sum_probs=72.1
Q ss_pred CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181 1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ 73 (73)
Q Consensus 1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~ 73 (73)
||+||||+++|++++++|+|++||++||++|++++|+|+++|||+|+|++|+|+.||++|||++|+||||+|+
T Consensus 28 mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~~ 100 (100)
T 1uh6_A 28 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYYQ 100 (100)
T ss_dssp EEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEECC
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEeC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999996
No 3
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.97 E-value=2.2e-30 Score=149.97 Aligned_cols=73 Identities=12% Similarity=0.175 Sum_probs=71.0
Q ss_pred CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181 1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ 73 (73)
Q Consensus 1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~ 73 (73)
.|+||||+++|++++++|+|++||++||++|++++|+||++|||+|+|++|+|+.||++|||++|++|||+.|
T Consensus 4 ~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~r 76 (79)
T 3phx_B 4 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLR 76 (79)
T ss_dssp CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred CEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEe
Confidence 3899999999999999999999999999999999999999999999999999999999999999999999865
No 4
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.8e-31 Score=159.29 Aligned_cols=72 Identities=17% Similarity=0.300 Sum_probs=69.1
Q ss_pred CEEEEEEcCCCCEEEEEeC--CCCcHHHHHHHH-HHHhCCCCccEEEEEcceEecCCccccccCC-CCCCEEEEEe
Q psy4181 1 MIEITCNDRLGKKVRVKCN--PDDTIGDLKKLI-AAQTGTRWEKIVLKKWYTIFKDHIRIMDYEI-HDGMNLELYY 72 (73)
Q Consensus 1 ~~~i~vk~~~G~~~~v~v~--~~~TV~~lK~~I-~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I-~~g~ti~L~~ 72 (73)
||+||||+++|++++++|+ |++||++||++| ++++|+|+++|||||+||+|+|+.||++|+| ++|++|+|.-
T Consensus 1 mmqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~ 76 (87)
T 2lxa_A 1 MVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMI 76 (87)
T ss_dssp CCEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEE
T ss_pred CEEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEc
Confidence 9999999999999999866 999999999999 9999999999999999999999999999999 7999999864
No 5
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.96 E-value=2.1e-29 Score=149.32 Aligned_cols=72 Identities=13% Similarity=0.141 Sum_probs=70.3
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceE-ecCCccccccCCCCCCEEEEEeC
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTI-FKDHIRIMDYEIHDGMNLELYYQ 73 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~-L~D~~tL~~y~I~~g~ti~L~~~ 73 (73)
|+||||+++|++++++|+|++||++||++|++++|+|+++|||+|+|++ |+|+.||++|||++|++|||+.+
T Consensus 11 ~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred eEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence 8999999999999999999999999999999999999999999999999 99999999999999999999864
No 6
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.96 E-value=3.1e-29 Score=148.30 Aligned_cols=72 Identities=17% Similarity=0.208 Sum_probs=70.0
Q ss_pred CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181 1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ 73 (73)
Q Consensus 1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~ 73 (73)
+|+||||+++|+++.++|++++||.+||++|++++|+|+++|||+|+|+.|+|+.||++||| +|++|||+.+
T Consensus 5 ~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~ 76 (90)
T 4dwf_A 5 SLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVER 76 (90)
T ss_dssp EEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEEC
T ss_pred EEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEec
Confidence 59999999999999999999999999999999999999999999999999999999999999 8999999864
No 7
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.8e-29 Score=154.95 Aligned_cols=72 Identities=19% Similarity=0.254 Sum_probs=69.0
Q ss_pred CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEe
Q psy4181 1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYY 72 (73)
Q Consensus 1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~ 72 (73)
||+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+|+|+.|+|+.||++|||++|++|||+.
T Consensus 1 mm~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~ 72 (106)
T 3m62_B 1 MVSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMV 72 (106)
T ss_dssp --CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEEC
T ss_pred CEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEE
Confidence 899999999999999999999999999999999999999999999999999999999999999999999975
No 8
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.96 E-value=2.6e-29 Score=145.46 Aligned_cols=72 Identities=11% Similarity=0.138 Sum_probs=70.5
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ 73 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~ 73 (73)
|+|+||+++|++++++|+|++||++||++|++++|+|+++|||+|+|++|+|+.||++|||++|++|||+.+
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~ 75 (79)
T 2uyz_B 4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 75 (79)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEEC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEe
Confidence 899999999999999999999999999999999999999999999999999999999999999999999864
No 9
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.96 E-value=3.1e-29 Score=148.94 Aligned_cols=72 Identities=21% Similarity=0.292 Sum_probs=70.1
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ 73 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~ 73 (73)
|+|+||+++|++++++|+|++||++||++|++++|+|+++|||+|+|+.|+|+.||++|||++|++|||..+
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~r 72 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLA 72 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECB
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEE
Confidence 799999999999999999999999999999999999999999999999999999999999999999999864
No 10
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.96 E-value=5.7e-29 Score=143.50 Aligned_cols=73 Identities=15% Similarity=0.120 Sum_probs=70.4
Q ss_pred CEEEEEEcCCCCEE-EEE-eCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181 1 MIEITCNDRLGKKV-RVK-CNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ 73 (73)
Q Consensus 1 ~~~i~vk~~~G~~~-~v~-v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~ 73 (73)
.|+|+||+++|+++ +++ |++++||++||++|+++.|+|+++|||+|+|++|+|+.||++|||++|++|||+.+
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r 76 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVR 76 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEEC
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEe
Confidence 48999999999996 999 99999999999999999999999999999999999999999999999999999875
No 11
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.96 E-value=5.3e-29 Score=146.82 Aligned_cols=72 Identities=17% Similarity=0.208 Sum_probs=69.8
Q ss_pred CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181 1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ 73 (73)
Q Consensus 1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~ 73 (73)
+|+|+||+++|+++.++|++++||++||++|+++.|+|+++|||+|+|+.|+|+.||++||| +|+||||+-|
T Consensus 17 ~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv~R 88 (88)
T 4eew_A 17 SLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVER 88 (88)
T ss_dssp EEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEEC
T ss_pred eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEEEC
Confidence 48999999999999999999999999999999999999999999999999999999999999 8999999865
No 12
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.96 E-value=4.3e-29 Score=150.87 Aligned_cols=73 Identities=11% Similarity=0.135 Sum_probs=71.1
Q ss_pred CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181 1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ 73 (73)
Q Consensus 1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~ 73 (73)
+|+||||+++|++++++|++++||++||++|++++|+|+++|||+|+|++|+|+.||++|+|++|++|||+.+
T Consensus 21 ~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~ 93 (97)
T 1wyw_B 21 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 93 (97)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEES
T ss_pred cEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEe
Confidence 4899999999999999999999999999999999999999999999999999999999999999999999874
No 13
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.96 E-value=1.8e-28 Score=139.47 Aligned_cols=72 Identities=21% Similarity=0.292 Sum_probs=70.3
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ 73 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~ 73 (73)
|+|+||+++|++++++|++++||++||++|+++.|+|+++|||+|+|+.|+|+.||++|||++|++|||..+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~ 72 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLA 72 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence 799999999999999999999999999999999999999999999999999999999999999999999875
No 14
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.96 E-value=2.4e-28 Score=142.62 Aligned_cols=73 Identities=22% Similarity=0.260 Sum_probs=70.5
Q ss_pred CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHH---hCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181 1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQ---TGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ 73 (73)
Q Consensus 1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~---~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~ 73 (73)
+|+|+||+++|+++.++|++++||++||++|+++ +|+|+++|||+|+|+.|+|+.||++|||++|++|||..+
T Consensus 5 ~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~ 80 (85)
T 2wyq_A 5 AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVT 80 (85)
T ss_dssp CEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC
T ss_pred eEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEc
Confidence 6999999999999999999999999999999998 899999999999999999999999999999999999753
No 15
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.96 E-value=3.7e-29 Score=148.40 Aligned_cols=73 Identities=12% Similarity=0.175 Sum_probs=70.9
Q ss_pred CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181 1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ 73 (73)
Q Consensus 1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~ 73 (73)
+|+|+||+++|++++++|++++||++||++|+++.|+|+++|||+|+|++|+|+.||++|||++|++|||+.+
T Consensus 4 ~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~ 76 (88)
T 2hj8_A 4 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLR 76 (88)
T ss_dssp EEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC
T ss_pred cEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEE
Confidence 4999999999999999999999999999999999999999999999999999999999999999999999864
No 16
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.96 E-value=2.4e-28 Score=145.33 Aligned_cols=73 Identities=23% Similarity=0.313 Sum_probs=70.9
Q ss_pred CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181 1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ 73 (73)
Q Consensus 1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~ 73 (73)
.|+|+||+.+|+++.++|++++||++||++|+++.|+|+++|||+|+|+.|+|+.||++|||++|++|||+.|
T Consensus 17 ~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r 89 (91)
T 3v6c_B 17 SMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 89 (91)
T ss_dssp SEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECC
T ss_pred eEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEe
Confidence 4899999999999999999999999999999999999999999999999999999999999999999999864
No 17
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.96 E-value=1.6e-28 Score=143.86 Aligned_cols=73 Identities=21% Similarity=0.289 Sum_probs=70.8
Q ss_pred CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181 1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ 73 (73)
Q Consensus 1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~ 73 (73)
.|+|+||+++|++++++|++++||.+||++|+++.|+|+++|||+|+|++|+|+.||++|||++|++|||+.+
T Consensus 12 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r 84 (88)
T 3dbh_I 12 SMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLR 84 (88)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCC
T ss_pred cEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEe
Confidence 4899999999999999999999999999999999999999999999999999999999999999999999764
No 18
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.96 E-value=1.9e-28 Score=142.54 Aligned_cols=73 Identities=23% Similarity=0.336 Sum_probs=70.5
Q ss_pred CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181 1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ 73 (73)
Q Consensus 1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~ 73 (73)
+|+||||+++|++++++|++++||.+||++|+++.|+|+++|||+|+|++|+|+.||++|+|++|++|||..+
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r 75 (85)
T 3n3k_B 3 HMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLK 75 (85)
T ss_dssp -CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEEC
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEe
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999864
No 19
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.95 E-value=5.3e-28 Score=140.46 Aligned_cols=73 Identities=23% Similarity=0.282 Sum_probs=71.2
Q ss_pred CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181 1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ 73 (73)
Q Consensus 1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~ 73 (73)
+|+|+||+++|++++++|++++||.+||++|+++.|+|+++|||+|+|+.|+|+.||++|+|++|++|||+.+
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r 75 (85)
T 3mtn_B 3 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLR 75 (85)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECC
T ss_pred eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEE
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999864
No 20
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.95 E-value=4.5e-28 Score=142.84 Aligned_cols=73 Identities=18% Similarity=0.140 Sum_probs=70.5
Q ss_pred CEEEEEEcCCC-CEEEE-EeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181 1 MIEITCNDRLG-KKVRV-KCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ 73 (73)
Q Consensus 1 ~~~i~vk~~~G-~~~~v-~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~ 73 (73)
+|+||||+++| +++++ +|++++||.+||++|+++.|+|+++|||+|+|++|+|+.||++|||++|++|||+.+
T Consensus 7 ~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 81 (89)
T 1wy8_A 7 GMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVR 81 (89)
T ss_dssp CEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEEC
T ss_pred cEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEe
Confidence 69999999999 79999 599999999999999999999999999999999999999999999999999999875
No 21
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.95 E-value=3.4e-28 Score=142.69 Aligned_cols=73 Identities=23% Similarity=0.223 Sum_probs=71.1
Q ss_pred CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181 1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ 73 (73)
Q Consensus 1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~ 73 (73)
+|+|+||+++|+++.++|++++||.+||++|+++.|+|+++|||+|+|++|+|+.||++|+|++|++|||..+
T Consensus 7 ~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~ 79 (87)
T 1wh3_A 7 GIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKK 79 (87)
T ss_dssp SEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEEC
T ss_pred CEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEe
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999864
No 22
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.95 E-value=6.3e-28 Score=143.23 Aligned_cols=72 Identities=25% Similarity=0.312 Sum_probs=69.9
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ 73 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~ 73 (73)
|+|+||+++|+++.++|++++||++||++|+++.|+|+++|||+|+|+.|+|+.||++|||++|++|+|+.+
T Consensus 10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r 81 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 81 (88)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-
T ss_pred eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence 899999999999999999999999999999999999999999999999999999999999999999999864
No 23
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.95 E-value=2.1e-28 Score=154.43 Aligned_cols=72 Identities=14% Similarity=0.128 Sum_probs=68.1
Q ss_pred EEEEEEcCCCC-EEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCC-------CCCEEEEEeC
Q psy4181 2 IEITCNDRLGK-KVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIH-------DGMNLELYYQ 73 (73)
Q Consensus 2 ~~i~vk~~~G~-~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~-------~g~ti~L~~~ 73 (73)
|++||+...|+ ++.++|+|++||++||++|++++|||+++|||+|+||+|+|+.||++|||+ +++||||++|
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 67888888887 599999999999999999999999999999999999999999999999999 7999999875
No 24
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.95 E-value=1.5e-27 Score=135.66 Aligned_cols=72 Identities=24% Similarity=0.318 Sum_probs=70.2
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ 73 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~ 73 (73)
|+|+||+++|+++.++|++++||++||++|++..|+|+++|||+|+|+.|+|+.||++|||++|++|||..+
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~ 72 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLR 72 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEEC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEe
Confidence 799999999999999999999999999999999999999999999999999999999999999999999864
No 25
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.95 E-value=7.4e-28 Score=147.13 Aligned_cols=72 Identities=15% Similarity=0.270 Sum_probs=67.4
Q ss_pred CEEEEEEcCCCCEEEE--EeCCCCcHHHHHHHH-HHHhCCCCccEEEEEcceEecCCccccccCC-CCCCEEEEEe
Q psy4181 1 MIEITCNDRLGKKVRV--KCNPDDTIGDLKKLI-AAQTGTRWEKIVLKKWYTIFKDHIRIMDYEI-HDGMNLELYY 72 (73)
Q Consensus 1 ~~~i~vk~~~G~~~~v--~v~~~~TV~~lK~~I-~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I-~~g~ti~L~~ 72 (73)
.|+|+||+++|+++++ +|+|++||++||++| ++.+|+|+++|||+|+|++|+|+.||++||| ++|++|||.-
T Consensus 19 ~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmv 94 (98)
T 4a20_A 19 AVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMI 94 (98)
T ss_dssp CEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEE
T ss_pred CEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEE
Confidence 3899999999998777 566999999999999 8899999999999999999999999999999 9999999974
No 26
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.95 E-value=9.8e-28 Score=138.48 Aligned_cols=73 Identities=19% Similarity=0.268 Sum_probs=70.8
Q ss_pred CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181 1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ 73 (73)
Q Consensus 1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~ 73 (73)
+|+|+||+.+|+.++++|++++||++||++|++..|+|+++|||+|+|+.|+|+.||++|||++|++|||..+
T Consensus 7 ~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 79 (81)
T 2dzi_A 7 GMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVK 79 (81)
T ss_dssp SEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECC
T ss_pred cEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEe
Confidence 5999999999999999999999999999999999999999999999999999999999999999999999864
No 27
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=7.8e-28 Score=145.24 Aligned_cols=73 Identities=22% Similarity=0.280 Sum_probs=70.8
Q ss_pred CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181 1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ 73 (73)
Q Consensus 1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~ 73 (73)
+|+|+||+.+|+++.++|++++||.+||++|+++.|+|+++|||+|+|+.|+|+.||++|||++|++|||+.+
T Consensus 22 ~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~r 94 (98)
T 4hcn_B 22 PMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 94 (98)
T ss_dssp CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECB
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEe
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999854
No 28
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.95 E-value=1.5e-27 Score=142.23 Aligned_cols=72 Identities=24% Similarity=0.322 Sum_probs=70.4
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ 73 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~ 73 (73)
|+|+||+++|+++.++|++++||.+||++|+++.|+|+++|||+|+|+.|+|+.||++|||++|++|||+.+
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r 73 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 73 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEE
Confidence 899999999999999999999999999999999999999999999999999999999999999999999864
No 29
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.95 E-value=1.6e-27 Score=143.67 Aligned_cols=72 Identities=17% Similarity=0.200 Sum_probs=69.2
Q ss_pred CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCC-ccccccCCCCCCEEEEEeC
Q psy4181 1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDH-IRIMDYEIHDGMNLELYYQ 73 (73)
Q Consensus 1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~-~tL~~y~I~~g~ti~L~~~ 73 (73)
.|+||||+++| +++++|++++||++||++|++++|+|+++|||+|+|++|+|+ .||++|||++|++|||+.+
T Consensus 15 ~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r 87 (94)
T 2kan_A 15 KIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLK 87 (94)
T ss_dssp CEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEEC
T ss_pred CEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEe
Confidence 48999999988 999999999999999999999999999999999999999999 9999999999999999864
No 30
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.95 E-value=1.9e-27 Score=149.35 Aligned_cols=73 Identities=15% Similarity=0.154 Sum_probs=68.2
Q ss_pred CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHH------HhCC--CCccEEEEEcceEecCCccccccCCCCC--CEEEE
Q psy4181 1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAA------QTGT--RWEKIVLKKWYTIFKDHIRIMDYEIHDG--MNLEL 70 (73)
Q Consensus 1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~------~~gi--p~~~QrLif~Gk~L~D~~tL~~y~I~~g--~ti~L 70 (73)
.|+|+||+++|++++++|+|++||++||++|++ ++|+ |+++|||||+||+|+|+.||++|+|+.+ +||||
T Consensus 16 ~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tlhL 95 (116)
T 1wgh_A 16 MINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHL 95 (116)
T ss_dssp SEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEE
T ss_pred eEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEE
Confidence 489999999999999999999999999999999 7786 6999999999999999999999999877 68999
Q ss_pred EeC
Q psy4181 71 YYQ 73 (73)
Q Consensus 71 ~~~ 73 (73)
+.|
T Consensus 96 vlr 98 (116)
T 1wgh_A 96 VAR 98 (116)
T ss_dssp EEC
T ss_pred Ecc
Confidence 864
No 31
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.95 E-value=2.3e-27 Score=142.50 Aligned_cols=71 Identities=15% Similarity=0.241 Sum_probs=69.1
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHH---hCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEe
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQ---TGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYY 72 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~---~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~ 72 (73)
|+|+||+++|+.+.++|++++||++||++|++. +|+|+++|||+|+|+.|+|+.||++|||++|++|||..
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~ 74 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMV 74 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEE
Confidence 799999999999999999999999999999999 89999999999999999999999999999999999975
No 32
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.95 E-value=2.9e-27 Score=135.36 Aligned_cols=71 Identities=24% Similarity=0.295 Sum_probs=68.8
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ 73 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~ 73 (73)
|+|+||+ +|+.++++|++++||++||++|++..|+|+++|||+|+|+.|+|+.||++|||++|++|||..+
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEc
Confidence 8999999 9999999999999999999999999999999999999999999999999999999999999753
No 33
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.95 E-value=7.7e-28 Score=151.91 Aligned_cols=72 Identities=13% Similarity=0.128 Sum_probs=69.2
Q ss_pred EEEEEEcCCCC-EEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCC-------CCEEEEEeC
Q psy4181 2 IEITCNDRLGK-KVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHD-------GMNLELYYQ 73 (73)
Q Consensus 2 ~~i~vk~~~G~-~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~-------g~ti~L~~~ 73 (73)
|.+|++...++ ++.++|+|++||.+||++|++++|+||++|||||+|++|+|+.||++|||++ ++||||++|
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 67899998888 8889999999999999999999999999999999999999999999999999 999999986
No 34
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.95 E-value=2.2e-27 Score=150.65 Aligned_cols=73 Identities=15% Similarity=0.142 Sum_probs=68.8
Q ss_pred CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHH------HhCCC--CccEEEEEcceEecCCccccccCCCCCC--EEEE
Q psy4181 1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAA------QTGTR--WEKIVLKKWYTIFKDHIRIMDYEIHDGM--NLEL 70 (73)
Q Consensus 1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~------~~gip--~~~QrLif~Gk~L~D~~tL~~y~I~~g~--ti~L 70 (73)
||+|+||+++|++++++|+|++||++||++|++ ++|+| +++|||||+||+|+|+.||++|+|++|+ ||||
T Consensus 17 ~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlhl 96 (125)
T 2gow_A 17 MINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHL 96 (125)
T ss_dssp CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEEE
T ss_pred eEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEE
Confidence 599999999999999999999999999999999 88995 9999999999999999999999999776 7899
Q ss_pred EeC
Q psy4181 71 YYQ 73 (73)
Q Consensus 71 ~~~ 73 (73)
+.|
T Consensus 97 v~r 99 (125)
T 2gow_A 97 VAR 99 (125)
T ss_dssp EEC
T ss_pred Eec
Confidence 864
No 35
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.95 E-value=5.8e-27 Score=144.68 Aligned_cols=73 Identities=23% Similarity=0.314 Sum_probs=71.1
Q ss_pred CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181 1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ 73 (73)
Q Consensus 1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~ 73 (73)
+|+|+||+++|+++.++|++++||.+||++|+++.|+|+++|||+|+|++|+|+.||++|||++|++|||+.+
T Consensus 35 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~r 107 (111)
T 3vdz_A 35 AMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 107 (111)
T ss_dssp CEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEEC
T ss_pred cEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEe
Confidence 5999999999999999999999999999999999999999999999999999999999999999999999865
No 36
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.95 E-value=1.9e-27 Score=145.57 Aligned_cols=73 Identities=12% Similarity=0.123 Sum_probs=70.9
Q ss_pred CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181 1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ 73 (73)
Q Consensus 1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~ 73 (73)
+|+|+||+++|+++.++|++++||++||++|+++.|+|+++|||+|+|+.|+|+.||++|||++|++|||+.+
T Consensus 23 ~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~ 95 (106)
T 1ttn_A 23 ECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVS 95 (106)
T ss_dssp SEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECC
T ss_pred eEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence 5999999999999999999999999999999999999999999999999999999999999999999999864
No 37
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.95 E-value=4.8e-27 Score=150.62 Aligned_cols=72 Identities=13% Similarity=0.189 Sum_probs=70.5
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ 73 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~ 73 (73)
|+||||+++|++++++|++++||++||++|++++|+|+++|||+|+|++|+|+.||++|||++|+||||..+
T Consensus 82 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~r 153 (159)
T 3rt3_B 82 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLR 153 (159)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEe
Confidence 899999999999999999999999999999999999999999999999999999999999999999999864
No 38
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.95 E-value=1e-27 Score=146.63 Aligned_cols=70 Identities=16% Similarity=0.203 Sum_probs=65.9
Q ss_pred EEEEEEcCCCC--EEEEEeCCCCcHHHHHHHHHHH-hCCCC-ccEEEEEcceEecCCcccccc--CCCCCCEEEEE
Q psy4181 2 IEITCNDRLGK--KVRVKCNPDDTIGDLKKLIAAQ-TGTRW-EKIVLKKWYTIFKDHIRIMDY--EIHDGMNLELY 71 (73)
Q Consensus 2 ~~i~vk~~~G~--~~~v~v~~~~TV~~lK~~I~~~-~gip~-~~QrLif~Gk~L~D~~tL~~y--~I~~g~ti~L~ 71 (73)
|+|+||+++|+ +++++|+|++||++||++|+++ +|+|| ++|||||+||+|+|+.||++| +|++|+||||+
T Consensus 24 m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 24 VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp EEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 89999999998 7899999999999999999996 67665 999999999999999999999 99999999985
No 39
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.95 E-value=1.6e-27 Score=142.42 Aligned_cols=73 Identities=15% Similarity=0.117 Sum_probs=69.3
Q ss_pred CEEEEEEcCCCC--EEEEEeCCCCcHHHHHHHHHHHh--CCCCccEEEEEcceEecCCcccccc--CCCCCCEEEEEeC
Q psy4181 1 MIEITCNDRLGK--KVRVKCNPDDTIGDLKKLIAAQT--GTRWEKIVLKKWYTIFKDHIRIMDY--EIHDGMNLELYYQ 73 (73)
Q Consensus 1 ~~~i~vk~~~G~--~~~v~v~~~~TV~~lK~~I~~~~--gip~~~QrLif~Gk~L~D~~tL~~y--~I~~g~ti~L~~~ 73 (73)
+|+|+||+++|+ +++++|++++||++||++|++++ |+|+++|||+|+|++|+|+.||++| +|++|++|||+.+
T Consensus 7 ~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~ 85 (93)
T 1wgd_A 7 GVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCN 85 (93)
T ss_dssp CCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECC
T ss_pred EEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeC
Confidence 589999999998 78888889999999999999998 9999999999999999999999999 9999999999853
No 40
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.95 E-value=4.3e-27 Score=145.84 Aligned_cols=70 Identities=16% Similarity=0.168 Sum_probs=67.3
Q ss_pred EEEEEEcCCC--CEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCC-CCCCEEEEE
Q psy4181 2 IEITCNDRLG--KKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEI-HDGMNLELY 71 (73)
Q Consensus 2 ~~i~vk~~~G--~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I-~~g~ti~L~ 71 (73)
|+|+|++..+ .+++++|+|++||++||++|++++||||++|||+|+|+.++|++||++||| ++|+++||+
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~ 97 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLY 97 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEE
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEE
Confidence 7899999985 799999999999999999999999999999999999999999999999999 699999997
No 41
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.94 E-value=2.5e-27 Score=142.15 Aligned_cols=71 Identities=13% Similarity=0.107 Sum_probs=68.2
Q ss_pred CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181 1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ 73 (73)
Q Consensus 1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~ 73 (73)
+|+||||+ |++++++|++++||++||++|+++.|+|+++|||+|+|++|+|+.||++|||++|++|||+.|
T Consensus 19 ~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~r 89 (93)
T 2l7r_A 19 SMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGR 89 (93)
T ss_dssp -CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECC
T ss_pred cEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEe
Confidence 58999998 999999999999999999999999999999999999999999999999999999999999864
No 42
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.94 E-value=3.4e-27 Score=150.29 Aligned_cols=73 Identities=14% Similarity=0.170 Sum_probs=68.5
Q ss_pred CEEEEEEcCCCCEE-EEEeCCCCcHHHHHHHH-----HHHhCCCC--ccEEEEEcceEecCCccccccCCCCC------C
Q psy4181 1 MIEITCNDRLGKKV-RVKCNPDDTIGDLKKLI-----AAQTGTRW--EKIVLKKWYTIFKDHIRIMDYEIHDG------M 66 (73)
Q Consensus 1 ~~~i~vk~~~G~~~-~v~v~~~~TV~~lK~~I-----~~~~gip~--~~QrLif~Gk~L~D~~tL~~y~I~~g------~ 66 (73)
.|+|+||+++|+.+ +++++|++||++||++| ++++|+|+ ++|||||+||+|+|+.||++|+|++| +
T Consensus 16 ~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v~ 95 (126)
T 1se9_A 16 QLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVT 95 (126)
T ss_dssp CEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCE
T ss_pred cEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCcE
Confidence 38999999999999 79999999999999999 67889997 89999999999999999999999999 7
Q ss_pred EEEEEeC
Q psy4181 67 NLELYYQ 73 (73)
Q Consensus 67 ti~L~~~ 73 (73)
|+||+.|
T Consensus 96 tmhlVlr 102 (126)
T 1se9_A 96 TMHVIIQ 102 (126)
T ss_dssp EEEEEEC
T ss_pred EEEEEec
Confidence 8999875
No 43
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.94 E-value=7.9e-27 Score=140.29 Aligned_cols=72 Identities=24% Similarity=0.322 Sum_probs=70.2
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ 73 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~ 73 (73)
|+|+||+++|+++.++|++++||++||++|++..|+|+++|||+|+|+.|+|+.||++|||++|++|+|..+
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~ 72 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEe
Confidence 799999999999999999999999999999999999999999999999999999999999999999999864
No 44
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.90 E-value=4e-29 Score=143.31 Aligned_cols=72 Identities=13% Similarity=0.176 Sum_probs=70.0
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ 73 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~ 73 (73)
|+||||+++|+++.++|++++||++||++|++..|+|+++|||+|+|+.|+|+.||++|||++|++|||..+
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~r 72 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQR 72 (76)
Confidence 899999999999999999999999999999999999999999999999999999999999999999999764
No 45
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.94 E-value=1.6e-27 Score=147.48 Aligned_cols=72 Identities=18% Similarity=0.164 Sum_probs=68.0
Q ss_pred CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCC---------------ccEEEEEcceEec-CCccccccCCCC
Q psy4181 1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRW---------------EKIVLKKWYTIFK-DHIRIMDYEIHD 64 (73)
Q Consensus 1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~---------------~~QrLif~Gk~L~-D~~tL~~y~I~~ 64 (73)
+|+|+||+++|++++|+|+|++||++||++|++++|+|+ ++|||||+|++|+ |..||++|||++
T Consensus 7 ~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~~ 86 (105)
T 1v2y_A 7 GMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRN 86 (105)
T ss_dssp SEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCS
T ss_pred cEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCCC
Confidence 599999999999999999999999999999999999988 4679999999997 679999999999
Q ss_pred CCEEEEEe
Q psy4181 65 GMNLELYY 72 (73)
Q Consensus 65 g~ti~L~~ 72 (73)
|++|||+-
T Consensus 87 g~~l~lv~ 94 (105)
T 1v2y_A 87 RDEVSFIK 94 (105)
T ss_dssp SEEEEEEE
T ss_pred CCEEEEEe
Confidence 99999974
No 46
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.94 E-value=3e-27 Score=145.47 Aligned_cols=70 Identities=11% Similarity=-0.016 Sum_probs=64.3
Q ss_pred EEEEEEcCC----CCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181 2 IEITCNDRL----GKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY 71 (73)
Q Consensus 2 ~~i~vk~~~----G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~ 71 (73)
..|.|+.++ |++++++|+|++||++||++|++++|+||++|||||+||+|+|+.||++|||++|++|++.
T Consensus 16 ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti~vl 89 (100)
T 1wju_A 16 ATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVL 89 (100)
T ss_dssp EEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEE
T ss_pred EEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEEEEE
Confidence 345666666 8899999999999999999999999999999999999999999999999999999999653
No 47
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.94 E-value=1.1e-26 Score=152.63 Aligned_cols=72 Identities=22% Similarity=0.295 Sum_probs=70.3
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ 73 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~ 73 (73)
|||+||+++|++++++|++++||.+||++|++++|+||++|||+|+|++|+|+.||++|||++|++|||+.+
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlr 72 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEE
Confidence 799999999999999999999999999999999999999999999999999999999999999999999864
No 48
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.94 E-value=8.4e-27 Score=149.49 Aligned_cols=71 Identities=15% Similarity=0.197 Sum_probs=69.6
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEE-E-cceEecCCccccccCCCCCCEEEEEe
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLK-K-WYTIFKDHIRIMDYEIHDGMNLELYY 72 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLi-f-~Gk~L~D~~tL~~y~I~~g~ti~L~~ 72 (73)
|+|+||+++|++++++|+|++||++||++|++..|+||++|||+ | +|++|+|+.||++|||++|++|||..
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~ 75 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVV 75 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEE
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEc
Confidence 99999999999999999999999999999999999999999999 9 89999999999999999999999975
No 49
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.94 E-value=9.4e-27 Score=141.64 Aligned_cols=72 Identities=22% Similarity=0.265 Sum_probs=69.1
Q ss_pred CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181 1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ 73 (73)
Q Consensus 1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~ 73 (73)
||+|+||+++|+ +.++|++++||.+||++|+++.|+|+++|||+|+|+.|+|+.||++|||++|++|||+.+
T Consensus 22 ~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r 93 (100)
T 1yqb_A 22 LIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIK 93 (100)
T ss_dssp EEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEEC
T ss_pred eEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEc
Confidence 599999999986 799999999999999999999999999999999999999999999999999999999864
No 50
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.94 E-value=4.7e-27 Score=140.65 Aligned_cols=72 Identities=15% Similarity=0.169 Sum_probs=69.5
Q ss_pred CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181 1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ 73 (73)
Q Consensus 1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~ 73 (73)
+|+|+||+. |+++.++|++++||.+||++|+++.|+|+++|||+|+|+.|+|+.||++|||++|++|||+.+
T Consensus 17 ~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~ 88 (96)
T 1wx8_A 17 IIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVR 88 (96)
T ss_dssp EEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBC
T ss_pred cEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEe
Confidence 589999998 999999999999999999999999999999999999999999999999999999999999753
No 51
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.94 E-value=5.1e-26 Score=138.45 Aligned_cols=72 Identities=19% Similarity=0.309 Sum_probs=69.5
Q ss_pred CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181 1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ 73 (73)
Q Consensus 1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~ 73 (73)
+|+|+||++ |+.+.++|++++||++||++|++..|+|+++|||+|+|+.|+|+.||++|||++|++|||+.+
T Consensus 25 ~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~ 96 (101)
T 2klc_A 25 IMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIK 96 (101)
T ss_dssp CEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEEC
T ss_pred eEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEc
Confidence 589999998 999999999999999999999999999999999999999999999999999999999999863
No 52
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.94 E-value=4.2e-26 Score=141.64 Aligned_cols=72 Identities=22% Similarity=0.286 Sum_probs=70.0
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ 73 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~ 73 (73)
++|+||+++|++++++|++++||++||++|+++.|+|+++|||+|+|++|+|+.||++|||++|++|||+.+
T Consensus 10 ~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~ 81 (114)
T 2kdi_A 10 FQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLR 81 (114)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEEC
T ss_pred EEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEE
Confidence 589999999999999999999999999999999999999999999999999999999999999999999864
No 53
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.94 E-value=8.1e-26 Score=139.23 Aligned_cols=73 Identities=23% Similarity=0.314 Sum_probs=71.1
Q ss_pred CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181 1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ 73 (73)
Q Consensus 1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~ 73 (73)
+|+|+||+++|+++.++|++++||++||++|+++.|+|+++|||+|+|+.|+|+.||++|||++|++|||+.+
T Consensus 35 ~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~r 107 (111)
T 2ojr_A 35 AMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 107 (111)
T ss_dssp CEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEEC
T ss_pred eEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence 5999999999999999999999999999999999999999999999999999999999999999999999875
No 54
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.93 E-value=5.4e-26 Score=147.84 Aligned_cols=73 Identities=23% Similarity=0.312 Sum_probs=70.8
Q ss_pred CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181 1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ 73 (73)
Q Consensus 1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~ 73 (73)
+|+||||+.+|++++++|++++||.+||++|++++|+|+++|||+|+|++|+|+.||++|||++|++|||..+
T Consensus 20 ~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~ 92 (172)
T 3u30_A 20 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 92 (172)
T ss_dssp CEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEEC
T ss_pred cEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeec
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999753
No 55
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.93 E-value=9.7e-27 Score=139.33 Aligned_cols=70 Identities=17% Similarity=0.135 Sum_probs=66.0
Q ss_pred CEEEEEEcCCCCEE--EE-EeCCCCcHHHHHHHHHHH-hCCCCccEEEEEc--ceEecCCccccccCCCCCCEEEE
Q psy4181 1 MIEITCNDRLGKKV--RV-KCNPDDTIGDLKKLIAAQ-TGTRWEKIVLKKW--YTIFKDHIRIMDYEIHDGMNLEL 70 (73)
Q Consensus 1 ~~~i~vk~~~G~~~--~v-~v~~~~TV~~lK~~I~~~-~gip~~~QrLif~--Gk~L~D~~tL~~y~I~~g~ti~L 70 (73)
||+|+||+++|+.. ++ +|+|++||++||++|+++ +|+||++|||+|. |++|+|+.||++|||++|+|||+
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 79999999999886 58 999999999999999994 8999999999987 99999999999999999999986
No 56
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.93 E-value=4.2e-26 Score=138.76 Aligned_cols=72 Identities=18% Similarity=0.217 Sum_probs=68.2
Q ss_pred CEEEEEEcCCC----CEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCC-ccccccCCCCCCEEEEEe
Q psy4181 1 MIEITCNDRLG----KKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDH-IRIMDYEIHDGMNLELYY 72 (73)
Q Consensus 1 ~~~i~vk~~~G----~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~-~tL~~y~I~~g~ti~L~~ 72 (73)
||+|+||+++| ++++++|++++||++||++|++++|+|+++|||+|+|++|+|+ .||++|||++|++|||.-
T Consensus 7 ~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~ 83 (102)
T 1v5o_A 7 GMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQ 83 (102)
T ss_dssp CEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECB
T ss_pred eEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEE
Confidence 79999999765 7999999999999999999999999999999999999999988 699999999999999964
No 57
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.93 E-value=1.3e-25 Score=141.67 Aligned_cols=72 Identities=21% Similarity=0.346 Sum_probs=69.7
Q ss_pred CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181 1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ 73 (73)
Q Consensus 1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~ 73 (73)
+|+|+||++ |+++.++|++++||.+||++|+++.|+|+++|||+|+|+.|+|+.||++|||++|++|||+.+
T Consensus 32 ~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~ 103 (125)
T 1j8c_A 32 IIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIK 103 (125)
T ss_dssp CEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC
T ss_pred cEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEec
Confidence 599999998 999999999999999999999999999999999999999999999999999999999999864
No 58
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.93 E-value=4.6e-26 Score=139.06 Aligned_cols=72 Identities=22% Similarity=0.265 Sum_probs=69.1
Q ss_pred CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181 1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ 73 (73)
Q Consensus 1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~ 73 (73)
||+|+||+.+|+ +.++|++++||.+||++|+++.|+|+++|||+|+|+.|+|+.||++|||++|++|||+.+
T Consensus 17 ~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~ 88 (106)
T 1wx7_A 17 LIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIK 88 (106)
T ss_dssp EEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEEC
T ss_pred eEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEc
Confidence 699999999886 799999999999999999999999999999999999999999999999999999999864
No 59
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.93 E-value=5.4e-26 Score=139.88 Aligned_cols=73 Identities=21% Similarity=0.290 Sum_probs=70.3
Q ss_pred CEEEEEEcC---CCCEEEEEeCC-CCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181 1 MIEITCNDR---LGKKVRVKCNP-DDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ 73 (73)
Q Consensus 1 ~~~i~vk~~---~G~~~~v~v~~-~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~ 73 (73)
.|+||||++ +|+.++++|+| ++||.+||++|++.+|+|+++|||+|+|++|+|+.||++|||++|++|||..+
T Consensus 27 ~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r 103 (111)
T 1we6_A 27 PATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLR 103 (111)
T ss_dssp CEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECS
T ss_pred cEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEE
Confidence 489999999 89999999998 99999999999999999999999999999999999999999999999999864
No 60
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.93 E-value=7.2e-26 Score=151.87 Aligned_cols=72 Identities=24% Similarity=0.290 Sum_probs=70.1
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ 73 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~ 73 (73)
||||||+++|++++++|+|++||.+||++|++++|+|+++|||+|+|++|+|+.||++|+|++|+||||+.+
T Consensus 106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~Lvlr 177 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 177 (189)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCC
T ss_pred eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEE
Confidence 899999999999999999999999999999999999999999999999999999999999999999999753
No 61
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.93 E-value=1.5e-25 Score=145.76 Aligned_cols=72 Identities=24% Similarity=0.322 Sum_probs=69.7
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ 73 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~ 73 (73)
|+||||+.+|++++++|++++||.+||++|++++|+|+++|||+|+|+.|+|+.||++|||++|+||||..+
T Consensus 97 ~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~r 168 (172)
T 3u30_A 97 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 168 (172)
T ss_dssp EEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-
T ss_pred ccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEe
Confidence 789999999999999999999999999999999999999999999999999999999999999999999764
No 62
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.93 E-value=1.9e-27 Score=149.81 Aligned_cols=72 Identities=22% Similarity=0.295 Sum_probs=0.0
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ 73 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~ 73 (73)
|+||||+++|++++++|++++||++||++|++.+|+||++|||+|+|++|+|+.||++|||++|++|||+.+
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~r 72 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72 (128)
T ss_dssp ------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEE
Confidence 799999999999999999999999999999999999999999999999999999999999999999999753
No 63
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.92 E-value=5.2e-25 Score=138.75 Aligned_cols=72 Identities=24% Similarity=0.322 Sum_probs=70.0
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ 73 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~ 73 (73)
|+|+||+++|++++++|++++||++||++|+++.|+|+++|||+|+|++|+|+.||++|||++|++|||+.+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~ 72 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEee
Confidence 799999999999999999999999999999999999999999999999999999999999999999999763
No 64
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.92 E-value=4.8e-26 Score=138.82 Aligned_cols=70 Identities=24% Similarity=0.299 Sum_probs=67.6
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEe
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYY 72 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~ 72 (73)
|+|+||+ +|+++.++|++++||++||++|++++|+|+++|||+|+|+.|+|+.||++|||++|++|||+-
T Consensus 29 i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~ 98 (101)
T 3m63_B 29 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVK 98 (101)
T ss_dssp CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECC
T ss_pred EEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEe
Confidence 6799998 999999999999999999999999999999999999999999999999999999999999963
No 65
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.92 E-value=1.3e-25 Score=134.01 Aligned_cols=70 Identities=19% Similarity=0.193 Sum_probs=67.9
Q ss_pred CEEEEEEcCCCCEEEE-EeCCCCcHHHHHHHHHHHhCCCCccEEEE---EcceEecCCccccccCCCCCCEEEEE
Q psy4181 1 MIEITCNDRLGKKVRV-KCNPDDTIGDLKKLIAAQTGTRWEKIVLK---KWYTIFKDHIRIMDYEIHDGMNLELY 71 (73)
Q Consensus 1 ~~~i~vk~~~G~~~~v-~v~~~~TV~~lK~~I~~~~gip~~~QrLi---f~Gk~L~D~~tL~~y~I~~g~ti~L~ 71 (73)
+|+|+||. .|+++++ +|++++||.+||++|++++|+|+++|||+ |+|++|+|+.+|++|||++|++|||.
T Consensus 7 ~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~ 80 (90)
T 1v5t_A 7 GLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMM 80 (90)
T ss_dssp SCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEE
T ss_pred eEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEE
Confidence 68999997 8999999 99999999999999999999999999999 99999999999999999999999996
No 66
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.92 E-value=4.4e-25 Score=139.23 Aligned_cols=70 Identities=10% Similarity=0.134 Sum_probs=66.8
Q ss_pred EEEEEE-cCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181 2 IEITCN-DRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY 71 (73)
Q Consensus 2 ~~i~vk-~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~ 71 (73)
|.|.|| .+.|..++++++++.||++||+++++..|+|+++|||||+||.|+|++||++|||++|+||||+
T Consensus 16 itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLv 86 (118)
T 2daf_A 16 ATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVE 86 (118)
T ss_dssp EEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEE
T ss_pred EEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEE
Confidence 567777 7789999999999999999999999999999999999999999999999999999999999997
No 67
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.92 E-value=2.8e-25 Score=132.84 Aligned_cols=70 Identities=14% Similarity=0.104 Sum_probs=67.2
Q ss_pred CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCC-ccccccCCCCCCEEEEEeC
Q psy4181 1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDH-IRIMDYEIHDGMNLELYYQ 73 (73)
Q Consensus 1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~-~tL~~y~I~~g~ti~L~~~ 73 (73)
+|+|+||+++|+.+.++|++++||++||++|++++ +++|||+|+|++|+|+ .||++|||++|++|||+.+
T Consensus 7 ~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~ 77 (95)
T 1wia_A 7 GINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRS 77 (95)
T ss_dssp SEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECC
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEEC
Confidence 59999999999999999999999999999999998 9999999999999999 9999999999999999753
No 68
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.92 E-value=1.2e-25 Score=135.98 Aligned_cols=69 Identities=19% Similarity=0.123 Sum_probs=66.3
Q ss_pred CEEEEEEcCCCCEE-EEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181 1 MIEITCNDRLGKKV-RVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY 71 (73)
Q Consensus 1 ~~~i~vk~~~G~~~-~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~ 71 (73)
||+|+||. .|+++ .++|++++||.+||++|++..|+|+++|||+|.|++|+|+ +|++|||++|++|||.
T Consensus 7 ~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~ 76 (96)
T 1wgg_A 7 GYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMM 76 (96)
T ss_dssp EEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECC
T ss_pred EEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEE
Confidence 69999996 79999 6999999999999999999999999999999999999999 9999999999999985
No 69
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.92 E-value=1.2e-24 Score=137.15 Aligned_cols=72 Identities=24% Similarity=0.322 Sum_probs=70.4
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ 73 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~ 73 (73)
|+|+||+++|++++++|++++||.+||++|+++.|+|+++|||+|+|+.|+|+.||++|||++|++|||..+
T Consensus 77 ~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r 148 (152)
T 3b08_A 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 148 (152)
T ss_dssp EEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred cceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEe
Confidence 789999999999999999999999999999999999999999999999999999999999999999999875
No 70
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.92 E-value=7.3e-27 Score=152.07 Aligned_cols=72 Identities=22% Similarity=0.295 Sum_probs=0.0
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ 73 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~ 73 (73)
||||||+++|++++++|+|++||++||++|++.+|+|+++|||+|+|++|+|+.||++|||++|++|||+.+
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlr 72 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72 (152)
T ss_dssp ------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEee
Confidence 799999999999999999999999999999999999999999999999999999999999999999999753
No 71
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.92 E-value=1.4e-24 Score=129.14 Aligned_cols=70 Identities=16% Similarity=0.174 Sum_probs=66.6
Q ss_pred CEEEEEEcCCCCEEEEEeCCC-----CcHHHHHHHHHHHhCCCCccEEEEEcceEecC-CccccccCCCCCCEEEEE
Q psy4181 1 MIEITCNDRLGKKVRVKCNPD-----DTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKD-HIRIMDYEIHDGMNLELY 71 (73)
Q Consensus 1 ~~~i~vk~~~G~~~~v~v~~~-----~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D-~~tL~~y~I~~g~ti~L~ 71 (73)
||+|+||+ .|+.+.++|+++ +||.+||++|+++.|+|+++|||+|+|+.|+| +.+|++|||++|++|||.
T Consensus 7 ~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~ 82 (92)
T 1wxv_A 7 GLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLI 82 (92)
T ss_dssp SEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEE
T ss_pred eEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEE
Confidence 79999999 599999999995 99999999999999999999999999999998 558999999999999996
No 72
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.92 E-value=1.2e-24 Score=128.74 Aligned_cols=69 Identities=19% Similarity=0.141 Sum_probs=66.2
Q ss_pred EEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEe
Q psy4181 4 ITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYY 72 (73)
Q Consensus 4 i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~ 72 (73)
+++++.+|+++.++|++++||++||++|++..|+||++|||+|+|++|+|+.||++|||++|++|+|..
T Consensus 14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~ 82 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMA 82 (85)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEEC
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEE
Confidence 577888999999999999999999999999999999999999999999999999999999999999874
No 73
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.91 E-value=1.3e-24 Score=131.91 Aligned_cols=71 Identities=20% Similarity=0.297 Sum_probs=65.1
Q ss_pred CEEEEEEcCCCC--EEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEc--ce---Ee-cCCccccccCCCCCCEEEEE
Q psy4181 1 MIEITCNDRLGK--KVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKW--YT---IF-KDHIRIMDYEIHDGMNLELY 71 (73)
Q Consensus 1 ~~~i~vk~~~G~--~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~--Gk---~L-~D~~tL~~y~I~~g~ti~L~ 71 (73)
++.|+|+..++. .++++++|++||++||++|++++||||++|||+|. |+ +| +|..||++|||++|+||||+
T Consensus 15 ~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlv 93 (95)
T 2kjr_A 15 FIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVV 93 (95)
T ss_dssp EEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEE
T ss_pred eEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEE
Confidence 478999988775 89999999999999999999999999999999997 45 55 89999999999999999996
No 74
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.91 E-value=1.6e-24 Score=134.13 Aligned_cols=73 Identities=19% Similarity=0.167 Sum_probs=68.8
Q ss_pred CEEEEEEcC----------CCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEE
Q psy4181 1 MIEITCNDR----------LGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLEL 70 (73)
Q Consensus 1 ~~~i~vk~~----------~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L 70 (73)
.|+|+|+.+ +|++++++|++++||.+||++|++..|+|+++|||+|+|+.|+|+.||++|||++|++|||
T Consensus 25 ~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~l 104 (115)
T 1we7_A 25 PVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIHL 104 (115)
T ss_dssp CEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEEE
T ss_pred CEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEEE
Confidence 378889886 4889999999999999999999999999999999999999999999999999999999999
Q ss_pred EeC
Q psy4181 71 YYQ 73 (73)
Q Consensus 71 ~~~ 73 (73)
+.+
T Consensus 105 v~r 107 (115)
T 1we7_A 105 ALK 107 (115)
T ss_dssp EEC
T ss_pred EEE
Confidence 864
No 75
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.91 E-value=1.5e-24 Score=132.91 Aligned_cols=71 Identities=20% Similarity=0.114 Sum_probs=67.0
Q ss_pred EEEEEEcCCC---CEEEEE--------eCCC-CcHHHHHHHHHHHh--CCCCcc-EEEEEcceEecCCccccccCCCCCC
Q psy4181 2 IEITCNDRLG---KKVRVK--------CNPD-DTIGDLKKLIAAQT--GTRWEK-IVLKKWYTIFKDHIRIMDYEIHDGM 66 (73)
Q Consensus 2 ~~i~vk~~~G---~~~~v~--------v~~~-~TV~~lK~~I~~~~--gip~~~-QrLif~Gk~L~D~~tL~~y~I~~g~ 66 (73)
|+|+||+.+| ++++++ |+++ +||.+||++|++++ |+|+++ |||+|+|+.|+|+.||++|||++|+
T Consensus 13 ~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~g~ 92 (107)
T 1x1m_A 13 WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGS 92 (107)
T ss_dssp CCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCTTC
T ss_pred eEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCCCC
Confidence 7899999999 899999 4554 99999999999999 999999 9999999999999999999999999
Q ss_pred EEEEEe
Q psy4181 67 NLELYY 72 (73)
Q Consensus 67 ti~L~~ 72 (73)
+|||+-
T Consensus 93 ~i~lv~ 98 (107)
T 1x1m_A 93 TVHVLR 98 (107)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 999975
No 76
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.91 E-value=1.1e-24 Score=133.74 Aligned_cols=70 Identities=14% Similarity=0.141 Sum_probs=66.6
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEE--cceEecCCccccccCCCCCCEEEEEe
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKK--WYTIFKDHIRIMDYEIHDGMNLELYY 72 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif--~Gk~L~D~~tL~~y~I~~g~ti~L~~ 72 (73)
|++|+++.+|++++++|++++||++||++|++++||||++|||+| +|+ |+|+.+|++|+|++|+||||+.
T Consensus 9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl 80 (100)
T 2dzm_A 9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLT 80 (100)
T ss_dssp EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECC
T ss_pred eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEe
Confidence 788999999999999999999999999999999999999999997 676 9999999999999999999974
No 77
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.90 E-value=7.2e-24 Score=126.51 Aligned_cols=70 Identities=11% Similarity=0.112 Sum_probs=62.8
Q ss_pred EEEEEE--cCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEE-------cceEecCCccccccCCCCCCEEEEE
Q psy4181 2 IEITCN--DRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKK-------WYTIFKDHIRIMDYEIHDGMNLELY 71 (73)
Q Consensus 2 ~~i~vk--~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif-------~Gk~L~D~~tL~~y~I~~g~ti~L~ 71 (73)
+.|.|. ...++.....+++++||++||++|++++||||++|||+| .|+.|+|+.||++|||++|+||||+
T Consensus 3 V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlv 81 (86)
T 4b6w_A 3 VKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVV 81 (86)
T ss_dssp EEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEE
T ss_pred EEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEE
Confidence 455554 345677889999999999999999999999999999996 6999999999999999999999996
No 78
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.90 E-value=1.8e-24 Score=130.34 Aligned_cols=69 Identities=16% Similarity=0.100 Sum_probs=65.1
Q ss_pred CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181 1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY 71 (73)
Q Consensus 1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~ 71 (73)
+|+|+||. .|+++.++|++++||.+||++|++..|+|+++|||+|.|++| |+.+|++|+|++|++|||.
T Consensus 17 ~~~i~Vk~-~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~L-dd~tL~~~~i~~g~~i~lv 85 (95)
T 1v86_A 17 LVDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVP-EDKTLREIKVTSGAKIMVV 85 (95)
T ss_dssp CEEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCC-SSSBHHHHCCCTTEEEEEC
T ss_pred eEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeC-CcCcHHHCCCCCCCEEEEE
Confidence 58999994 799999999999999999999999999999999999999999 4559999999999999985
No 79
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.90 E-value=2.1e-23 Score=148.30 Aligned_cols=73 Identities=23% Similarity=0.311 Sum_probs=70.5
Q ss_pred CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181 1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ 73 (73)
Q Consensus 1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~ 73 (73)
+|+|+||+++|+++.++|++++||++||++|+++.|+|+++|||+|+|++|+|+.||++|||++|++|||+-|
T Consensus 233 ~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlR 305 (307)
T 3ai5_A 233 SMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 305 (307)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC-
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEe
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999854
No 80
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.89 E-value=1.8e-23 Score=127.43 Aligned_cols=70 Identities=13% Similarity=0.192 Sum_probs=63.6
Q ss_pred EEEEEEcCCC--CEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcc---eE----ecCCccccccCCCCCCEEEEE
Q psy4181 2 IEITCNDRLG--KKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWY---TI----FKDHIRIMDYEIHDGMNLELY 71 (73)
Q Consensus 2 ~~i~vk~~~G--~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~G---k~----L~D~~tL~~y~I~~g~ti~L~ 71 (73)
+.|+|+..+. +.++++++|++||++||++|++++||||++|||+|.| +. ++|..||++|||++|++|||+
T Consensus 15 v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlv 93 (97)
T 2kj6_A 15 VHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHII 93 (97)
T ss_dssp EEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEE
T ss_pred EEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEE
Confidence 6788887655 4899999999999999999999999999999999988 33 499999999999999999986
No 81
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.89 E-value=2.7e-25 Score=149.37 Aligned_cols=67 Identities=15% Similarity=0.149 Sum_probs=0.0
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ 73 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~ 73 (73)
||||||+++|++++++|+|++||.+||++|++.+|||+++|||||+|++|+|+.||+ +|+||||+.|
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlR 67 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLK 67 (189)
T ss_dssp ------------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEe
Confidence 899999999999999999999999999999999999999999999999999999998 9999999864
No 82
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.89 E-value=5.5e-24 Score=130.69 Aligned_cols=71 Identities=24% Similarity=0.304 Sum_probs=66.7
Q ss_pred EEEEEEcCCCCEEEEEeC-CCCcHHHHHHHHHHHhCCCCccEEEEEcce-----------E----ecCCccccccCCCCC
Q psy4181 2 IEITCNDRLGKKVRVKCN-PDDTIGDLKKLIAAQTGTRWEKIVLKKWYT-----------I----FKDHIRIMDYEIHDG 65 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~-~~~TV~~lK~~I~~~~gip~~~QrLif~Gk-----------~----L~D~~tL~~y~I~~g 65 (73)
|+|+||+++|+. .++|+ |++||.+||++|++++|+|+++|||+|.|+ + ++|..||++|||++|
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G 86 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHG 86 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTT
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCC
Confidence 889999999977 79999 999999999999999999999999999998 4 589999999999999
Q ss_pred CEEEEEeC
Q psy4181 66 MNLELYYQ 73 (73)
Q Consensus 66 ~ti~L~~~ 73 (73)
++|||.|.
T Consensus 87 ~~L~l~~~ 94 (107)
T 1wf9_A 87 SMVYLAYE 94 (107)
T ss_dssp CEEECCCS
T ss_pred CEEEEEeC
Confidence 99999873
No 83
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.88 E-value=7.9e-23 Score=122.86 Aligned_cols=71 Identities=13% Similarity=0.194 Sum_probs=64.2
Q ss_pred CEEEEEEcCCCC-EEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcc---eE----ecCCccccccCCCCCCEEEEE
Q psy4181 1 MIEITCNDRLGK-KVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWY---TI----FKDHIRIMDYEIHDGMNLELY 71 (73)
Q Consensus 1 ~~~i~vk~~~G~-~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~G---k~----L~D~~tL~~y~I~~g~ti~L~ 71 (73)
||.|+|+...+. .+++++++++||++||++|++++|+||++|||+|.| +. ++|+.||++|||++|++|||.
T Consensus 7 ~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~ 85 (95)
T 1v6e_A 7 GVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVI 85 (95)
T ss_dssp CEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEB
T ss_pred EEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEE
Confidence 578999986553 789999999999999999999999999999999986 54 589999999999999999985
No 84
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.88 E-value=4e-23 Score=149.51 Aligned_cols=72 Identities=22% Similarity=0.260 Sum_probs=68.7
Q ss_pred CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHH---HhCCCCccEEEEEcceEecCCccccccCCCCCCEE-EEEe
Q psy4181 1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAA---QTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNL-ELYY 72 (73)
Q Consensus 1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~---~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti-~L~~ 72 (73)
+|+|+||+++|++++++|++++||.+||++|++ ++|+|+++|||||+||+|+|+.||++|||++|++| ||+-
T Consensus 7 ~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~ 82 (368)
T 1oqy_A 7 AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVT 82 (368)
T ss_dssp CCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEE
T ss_pred eEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEe
Confidence 689999999999999999999999999999999 67899999999999999999999999999999999 7764
No 85
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.87 E-value=1.4e-21 Score=118.23 Aligned_cols=72 Identities=15% Similarity=0.205 Sum_probs=70.0
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ 73 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~ 73 (73)
|+|+||+.+|+.+.+.|.+++++..|++.++++.|+|+++|||+|.|++|.++.|+++|++++|++||++.+
T Consensus 8 i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~ 79 (94)
T 2io1_B 8 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQ 79 (94)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEEC
T ss_pred EEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEe
Confidence 899999999999999999999999999999999999999999999999999999999999999999999753
No 86
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.86 E-value=9e-22 Score=123.25 Aligned_cols=71 Identities=14% Similarity=0.224 Sum_probs=64.2
Q ss_pred CEEEEEEcCCCC-EEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcc---e---E-ecCCccccccCCCCCCEEEEE
Q psy4181 1 MIEITCNDRLGK-KVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWY---T---I-FKDHIRIMDYEIHDGMNLELY 71 (73)
Q Consensus 1 ~~~i~vk~~~G~-~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~G---k---~-L~D~~tL~~y~I~~g~ti~L~ 71 (73)
||.|+|+...+. .++++++|++||++||++|++++||||++|||+|.| + + ++|+.||++|||++|++|||.
T Consensus 6 ~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvv 84 (122)
T 1t0y_A 6 VYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAV 84 (122)
T ss_dssp EEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEE
T ss_pred EEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEE
Confidence 478999986553 788999999999999999999999999999999987 4 3 489999999999999999986
No 87
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.85 E-value=1.3e-20 Score=108.58 Aligned_cols=70 Identities=14% Similarity=0.206 Sum_probs=68.6
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY 71 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~ 71 (73)
|+|+||+.+|+.+.+.|.+++++..|++..+++.|+|++++||+|.|++|.++.|.++|++++|++||+.
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 7999999999999999999999999999999999999999999999999999999999999999999985
No 88
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.84 E-value=1.1e-21 Score=115.83 Aligned_cols=70 Identities=20% Similarity=0.251 Sum_probs=64.0
Q ss_pred EEEEEEcCCCCEEEEE-eCCCCcHHHHHHHHHHHhCCCCccEEEEEcc--eEec---CCccccccCCCCCCEEEEEe
Q psy4181 2 IEITCNDRLGKKVRVK-CNPDDTIGDLKKLIAAQTGTRWEKIVLKKWY--TIFK---DHIRIMDYEIHDGMNLELYY 72 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~-v~~~~TV~~lK~~I~~~~gip~~~QrLif~G--k~L~---D~~tL~~y~I~~g~ti~L~~ 72 (73)
|+|+||+++|+.. ++ +++++||.+||++|+++.|+|+++|||+|++ |+|. |+.||++|||++|++||+..
T Consensus 1 m~i~vr~~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~ 76 (86)
T 2kzr_A 1 WRVRCKAKGGTHL-LQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEE 76 (86)
T ss_dssp CCEEEEETTEEEE-ECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCC
T ss_pred CEEEEEcCCCCEE-eeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEe
Confidence 7899999999655 88 9999999999999999999999999999974 8884 78899999999999999864
No 89
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.83 E-value=6.8e-20 Score=110.42 Aligned_cols=71 Identities=14% Similarity=0.195 Sum_probs=69.4
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEe
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYY 72 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~ 72 (73)
|+|+||+.+|+.+.+.|.+++++..|++.++++.|+|++++||+|.|++|.++.|.++|++++|++|+++.
T Consensus 6 i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~ 76 (91)
T 2io0_B 6 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 76 (91)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999875
No 90
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.83 E-value=7.7e-21 Score=135.18 Aligned_cols=70 Identities=21% Similarity=0.196 Sum_probs=65.4
Q ss_pred CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEE---EcceEecCCccccccCCCCCCEEEEE
Q psy4181 1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLK---KWYTIFKDHIRIMDYEIHDGMNLELY 71 (73)
Q Consensus 1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLi---f~Gk~L~D~~tL~~y~I~~g~ti~L~ 71 (73)
+|.|.||. +|+++++++++++||++||++|++..|+||++|||+ |+|++|+|+.||++|||++|++|||.
T Consensus 5 ~i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~ 77 (320)
T 3shq_A 5 EVVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMV 77 (320)
T ss_dssp EEEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEE
T ss_pred eEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEE
Confidence 47899996 899999999999999999999999999999999999 99999999999999999999999985
No 91
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.82 E-value=1.4e-19 Score=106.15 Aligned_cols=70 Identities=13% Similarity=0.138 Sum_probs=68.0
Q ss_pred EEEEEEcCCCC-EEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181 2 IEITCNDRLGK-KVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY 71 (73)
Q Consensus 2 ~~i~vk~~~G~-~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~ 71 (73)
|+|+||+.+|+ .+.+.|.+++++..|++.++++.|+|++++||+|.|++|.++.|.++|++++|++||+.
T Consensus 8 i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 8 LRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp EEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred EEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 89999999996 99999999999999999999999999999999999999999999999999999999974
No 92
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.81 E-value=2.4e-19 Score=108.06 Aligned_cols=72 Identities=15% Similarity=0.205 Sum_probs=69.8
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEeC
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ 73 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~~ 73 (73)
|+|+||+.+|+.+.+.|.+++++..|++.++++.|+|++++||+|.|++|.++.|.++|++++|++||++.+
T Consensus 18 i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~ 89 (93)
T 2d07_B 18 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQ 89 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEEC
T ss_pred EEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEee
Confidence 789999999999999999999999999999999999999999999999999999999999999999999753
No 93
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.79 E-value=3.9e-19 Score=109.44 Aligned_cols=71 Identities=14% Similarity=0.195 Sum_probs=69.3
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEe
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYY 72 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~ 72 (73)
|+|+||+.+|+.+.+.|.+++++..|++.++++.|+|++++||+|.|++|.++.|.++|++++|++||++.
T Consensus 25 I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~ 95 (104)
T 1wz0_A 25 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 95 (104)
T ss_dssp EEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECC
T ss_pred EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999875
No 94
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.78 E-value=4.4e-19 Score=110.31 Aligned_cols=71 Identities=7% Similarity=0.063 Sum_probs=69.5
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEe
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYY 72 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~ 72 (73)
|+|+||+.+|+.+.+.|.+++++..|++.++++.|+|+++|||+|.|++|.++.|.++|++++|++|+++.
T Consensus 27 I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~ 97 (110)
T 2k8h_A 27 VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMV 97 (110)
T ss_dssp EEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEEC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999975
No 95
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.77 E-value=2.3e-18 Score=106.51 Aligned_cols=70 Identities=13% Similarity=0.115 Sum_probs=68.4
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEe
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYY 72 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~ 72 (73)
|+|+|++ +|+.+.+.|.+++++..|++.++++.|+|++++||+|.|++|.++.|.++|++++|++|+++.
T Consensus 32 I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~ 101 (106)
T 2eke_C 32 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR 101 (106)
T ss_dssp EEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEE
T ss_pred EEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEe
Confidence 7999999 999999999999999999999999999999999999999999999999999999999999875
No 96
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.72 E-value=3.4e-17 Score=98.34 Aligned_cols=71 Identities=11% Similarity=0.099 Sum_probs=63.2
Q ss_pred CEEEEEEc---CCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcc------e-Ee-cCCccccccCCCCCCEEE
Q psy4181 1 MIEITCND---RLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWY------T-IF-KDHIRIMDYEIHDGMNLE 69 (73)
Q Consensus 1 ~~~i~vk~---~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~G------k-~L-~D~~tL~~y~I~~g~ti~ 69 (73)
|+.|+|+. .+|..+...+.+++||.+||++|+...|+|+..|||.|.+ . .| +|..+|++|||++|++||
T Consensus 9 ~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~ 88 (97)
T 1wjn_A 9 LLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLL 88 (97)
T ss_dssp EEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEE
T ss_pred cEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEE
Confidence 57888885 4788999999999999999999999999999999999863 2 25 688899999999999999
Q ss_pred EE
Q psy4181 70 LY 71 (73)
Q Consensus 70 L~ 71 (73)
+.
T Consensus 89 V~ 90 (97)
T 1wjn_A 89 VR 90 (97)
T ss_dssp EE
T ss_pred EE
Confidence 85
No 97
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=99.61 E-value=7.8e-15 Score=91.95 Aligned_cols=71 Identities=11% Similarity=0.132 Sum_probs=68.9
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEe
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYY 72 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~ 72 (73)
|+|.|++.+|+.+.+.|.+++++..|++..+++.|+|++++|++|.|++|.++.|.+++++++|++|+++-
T Consensus 41 I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~ 111 (115)
T 3kyd_D 41 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQ 111 (115)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEE
T ss_pred EEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 78999999999999999999999999999999999999999999999999999999999999999999874
No 98
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=99.55 E-value=3.7e-14 Score=95.84 Aligned_cols=70 Identities=13% Similarity=0.115 Sum_probs=67.5
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEe
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYY 72 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~ 72 (73)
|+|.|+. +|+.+.+.|.+++++..|++..+++.|+|+.++|++|.|++|.++.|.+++++++|++|+++-
T Consensus 30 I~LkV~~-~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~ 99 (200)
T 3pge_A 30 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR 99 (200)
T ss_dssp EEEEEEC-SSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEE
T ss_pred EEEEEec-CCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEe
Confidence 7899985 999999999999999999999999999999999999999999999999999999999999874
No 99
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=99.44 E-value=4e-13 Score=91.02 Aligned_cols=70 Identities=13% Similarity=0.123 Sum_probs=67.2
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEe
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYY 72 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~ 72 (73)
|+|.|+. +|+.+.+.|.+++++..|++..+++.|+|+.++|++|.|++|.++.|.++++++||++|+++-
T Consensus 58 InLKVk~-dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~l 127 (207)
T 3tix_A 58 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHR 127 (207)
T ss_dssp EEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECC
T ss_pred EEEEEec-CCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEE
Confidence 7899985 999999999999999999999999999999999999999999999999999999999999863
No 100
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=99.31 E-value=5.4e-12 Score=76.62 Aligned_cols=44 Identities=11% Similarity=-0.096 Sum_probs=41.7
Q ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEec
Q psy4181 9 RLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFK 52 (73)
Q Consensus 9 ~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~ 52 (73)
.+++.+++.+.|++||..+|++|++++||||++|||+|+|++|.
T Consensus 21 ~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~ 64 (94)
T 4efo_A 21 QQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLV 64 (94)
T ss_dssp TTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEEC
T ss_pred ccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccc
Confidence 37899999999999999999999999999999999999999875
No 101
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=99.29 E-value=1.1e-12 Score=77.00 Aligned_cols=70 Identities=17% Similarity=0.115 Sum_probs=60.5
Q ss_pred CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceE-----ecCCccccccCCCCCCEEEEE
Q psy4181 1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTI-----FKDHIRIMDYEIHDGMNLELY 71 (73)
Q Consensus 1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~-----L~D~~tL~~y~I~~g~ti~L~ 71 (73)
+|.|-||+.+| +..+++++++|+.+|+++|++..++|++.|.+.++-.+ +.++.+|+++||+.|++|++.
T Consensus 4 ~m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 4 SIIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred cEEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 47788999888 66699999999999999999999999999988766555 347889999999999999874
No 102
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=99.28 E-value=3e-13 Score=92.61 Aligned_cols=70 Identities=11% Similarity=0.089 Sum_probs=0.0
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEe
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYY 72 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~ 72 (73)
|+|.| +.+|+.+.+.|.++++...|++..+++.|+|++++|++|.|+++.+++|.++++++||++|+++.
T Consensus 22 InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~l 91 (227)
T 3v7o_A 22 INLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR 91 (227)
T ss_dssp -----------------------------------------------------------------------
T ss_pred EEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEe
Confidence 67889 77999999999999999999999999999999999999999999999999999999999999864
No 103
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=99.17 E-value=1.9e-10 Score=77.31 Aligned_cols=70 Identities=13% Similarity=0.115 Sum_probs=66.8
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEe
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYY 72 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~ 72 (73)
|.|.|++ +|+.+.+.|.++++...|++..+++.|+|++++|++|.|+++.+..|-.+.+++++++|++..
T Consensus 22 i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~ 91 (209)
T 3uf8_A 22 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR 91 (209)
T ss_dssp EEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEEC
T ss_pred EEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhc
Confidence 6789998 899999999999999999999999999999999999999999999999999999999998763
No 104
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=99.14 E-value=7.1e-10 Score=65.61 Aligned_cols=70 Identities=16% Similarity=0.166 Sum_probs=65.6
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCc-cEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWE-KIVLKKWYTIFKDHIRIMDYEIHDGMNLELY 71 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~-~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~ 71 (73)
|.+..++.....+.++|.++.||.+|-+.-+++.|||++ ..||.|.|..|..+.|+++|++.||+.|...
T Consensus 10 ~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvm 80 (82)
T 3goe_A 10 ITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVV 80 (82)
T ss_dssp EEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEE
T ss_pred HHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeee
Confidence 567788888888999999999999999999999999999 9999999999999999999999999999764
No 105
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=99.11 E-value=6.2e-10 Score=67.66 Aligned_cols=70 Identities=13% Similarity=0.125 Sum_probs=66.2
Q ss_pred EEEEEEcCCCC-EEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181 2 IEITCNDRLGK-KVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY 71 (73)
Q Consensus 2 ~~i~vk~~~G~-~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~ 71 (73)
|.|.|+..+|+ .+.+.|.++.+...|....+++.|++++.-|++|.|..|..+.|-+++++++|++|.+.
T Consensus 26 I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 26 LQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp EEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred EEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 67899998995 89999999999999999999999999999999999999999999999999999999864
No 106
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=99.04 E-value=2.1e-11 Score=88.29 Aligned_cols=69 Identities=13% Similarity=0.125 Sum_probs=0.0
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY 71 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~ 71 (73)
|+|.|++ +|+.+.+.|.++++...|++..+++.|++++++|++|.|+.+.++.|.+++++++|++|+++
T Consensus 22 I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~ 90 (360)
T 3ix6_A 22 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAH 90 (360)
T ss_dssp ----------------------------------------------------------------------
T ss_pred EEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhh
Confidence 6788998 78999999999999999999999999999999999999999999999999999999999875
No 107
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=98.93 E-value=2.7e-09 Score=67.79 Aligned_cols=69 Identities=14% Similarity=0.107 Sum_probs=61.9
Q ss_pred EEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCc-------------------------------------cEEEEE
Q psy4181 4 ITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWE-------------------------------------KIVLKK 46 (73)
Q Consensus 4 i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~-------------------------------------~QrLif 46 (73)
+.|+.++|+..++.|+.+.||.+++..|+.+.||+.. +|+|-.
T Consensus 14 LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~~ 93 (128)
T 2kc2_A 14 LKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLHT 93 (128)
T ss_dssp EEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCCC
T ss_pred EEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhcc
Confidence 7899999999999999999999999999999999965 566633
Q ss_pred --cceEecCCccccccCCCCCCEEEEEe
Q psy4181 47 --WYTIFKDHIRIMDYEIHDGMNLELYY 72 (73)
Q Consensus 47 --~Gk~L~D~~tL~~y~I~~g~ti~L~~ 72 (73)
++.+|.+..||.++||.+++||-|-|
T Consensus 94 dd~~~WLD~srtL~EQGI~e~~tllLRr 121 (128)
T 2kc2_A 94 DDELNWLDHGRTLREQGVEEHETLLLRR 121 (128)
T ss_dssp SSSEEEECSSSCHHHHTCCTTSEEEEEE
T ss_pred cCCCCcccCCCcHHHcCCCCCCEEEEEE
Confidence 35899999999999999999998865
No 108
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=98.89 E-value=1.8e-10 Score=82.48 Aligned_cols=69 Identities=13% Similarity=0.123 Sum_probs=0.0
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY 71 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~ 71 (73)
|.|.|++ +|..+.+.|.++++...|++..+++.|+|+.++|++|.|++|.+..|-+++++++|++|++.
T Consensus 31 i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~ 99 (389)
T 4da1_A 31 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAH 99 (389)
T ss_dssp ----------------------------------------------------------------------
T ss_pred EEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeee
Confidence 5688888 88999999999999999999999999999999999999999999999999999999999875
No 109
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=98.72 E-value=1.5e-07 Score=57.17 Aligned_cols=69 Identities=10% Similarity=0.033 Sum_probs=65.3
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY 71 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~ 71 (73)
|.|.|+. .|..+.+.+..+.--..|....+++.|+++.+-|++|.|..+.++.|-++.++++|++|..+
T Consensus 22 IniKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~ 90 (95)
T 2l76_A 22 FPLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCV 90 (95)
T ss_dssp EEEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEE
T ss_pred EEEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEE
Confidence 6788996 79999999999999999999999999999999999999999999999999999999999764
No 110
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=98.59 E-value=3.8e-07 Score=54.82 Aligned_cols=71 Identities=13% Similarity=0.084 Sum_probs=66.8
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEe
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYY 72 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~ 72 (73)
|.|.|-..+|+..++.|.|+.|+.++=++-.+++|+++++-.|.|++++|+=...+.-.||.+|+.+.|+-
T Consensus 10 m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~ 80 (90)
T 2al3_A 10 SAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVP 80 (90)
T ss_dssp CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEEC
T ss_pred cEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEE
Confidence 46888899999999999999999999999999999999999999999999888899999999999999873
No 111
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=98.43 E-value=1.5e-06 Score=51.14 Aligned_cols=69 Identities=16% Similarity=0.205 Sum_probs=59.4
Q ss_pred EEEEEEc--CCCCEEEEEeCCCCcHHHHHHHHHHHhCCCC-----ccEEEEEcceEecCCccccccCCCCCCEEEE
Q psy4181 2 IEITCND--RLGKKVRVKCNPDDTIGDLKKLIAAQTGTRW-----EKIVLKKWYTIFKDHIRIMDYEIHDGMNLEL 70 (73)
Q Consensus 2 ~~i~vk~--~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~-----~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L 70 (73)
|.|.+.. -.|+.+.+.++..-||++|++-+.+..+++. -+-|..-.|..|.+.++|++|+|.+|+.|.+
T Consensus 5 I~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 5 IDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp EEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred EEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 4566653 5899999999999999999999999999886 2446666888999999999999999999875
No 112
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=98.31 E-value=5.9e-06 Score=47.93 Aligned_cols=69 Identities=10% Similarity=0.124 Sum_probs=59.9
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEE--EcceEec---CCccccccCCCCCCEEEEE
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLK--KWYTIFK---DHIRIMDYEIHDGMNLELY 71 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLi--f~Gk~L~---D~~tL~~y~I~~g~ti~L~ 71 (73)
..|-||.++|+.+.-...+++||.+|.+-|.. .|.++....|. |-.|.|. .+.||++.|+.+..+|.+.
T Consensus 8 ~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve 81 (84)
T 3qx1_A 8 SKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE 81 (84)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEE
Confidence 46789999999998999999999999999988 67888889998 4467784 4679999999999999875
No 113
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=97.96 E-value=2.5e-05 Score=48.42 Aligned_cols=62 Identities=31% Similarity=0.341 Sum_probs=45.7
Q ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHh--CCCCc------cEEEEE----cceEecCCc-------------cccccCCCC
Q psy4181 10 LGKKVRVKCNPDDTIGDLKKLIAAQT--GTRWE------KIVLKK----WYTIFKDHI-------------RIMDYEIHD 64 (73)
Q Consensus 10 ~G~~~~v~v~~~~TV~~lK~~I~~~~--gip~~------~QrLif----~Gk~L~D~~-------------tL~~y~I~~ 64 (73)
.+..+++.|-.-|||.++|+||-+.. |.|.. ...|=+ +|+.|.|.+ ||++|+|.|
T Consensus 22 ~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 101 (111)
T 4e71_A 22 GVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRD 101 (111)
T ss_dssp CCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCT
T ss_pred CCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCC
Confidence 45678899999999999999999873 77654 445544 356777633 899999999
Q ss_pred CCEEEEE
Q psy4181 65 GMNLELY 71 (73)
Q Consensus 65 g~ti~L~ 71 (73)
|+||-|+
T Consensus 102 gatl~l~ 108 (111)
T 4e71_A 102 GATLILS 108 (111)
T ss_dssp TCEEEEE
T ss_pred CCEEEEE
Confidence 9999886
No 114
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=97.94 E-value=0.00021 Score=45.24 Aligned_cols=63 Identities=21% Similarity=0.295 Sum_probs=49.4
Q ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHh--CCCC------ccEEEEE-c---ce-EecCC-------------ccccccCCC
Q psy4181 10 LGKKVRVKCNPDDTIGDLKKLIAAQT--GTRW------EKIVLKK-W---YT-IFKDH-------------IRIMDYEIH 63 (73)
Q Consensus 10 ~G~~~~v~v~~~~TV~~lK~~I~~~~--gip~------~~QrLif-~---Gk-~L~D~-------------~tL~~y~I~ 63 (73)
.+..+++.|-.-|||.++|+||-+.. |.|. ++..|=+ . |+ .|.|. -||++|+|.
T Consensus 15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~ 94 (127)
T 3h6n_A 15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP 94 (127)
T ss_dssp CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence 56679999999999999999999873 6665 5677755 3 33 36652 389999999
Q ss_pred CCCEEEEEe
Q psy4181 64 DGMNLELYY 72 (73)
Q Consensus 64 ~g~ti~L~~ 72 (73)
||+||-|+.
T Consensus 95 dgatv~l~~ 103 (127)
T 3h6n_A 95 EGASLAMSL 103 (127)
T ss_dssp TTCEEEEEE
T ss_pred CCCEEEEEE
Confidence 999999864
No 115
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=97.88 E-value=0.00016 Score=43.98 Aligned_cols=71 Identities=17% Similarity=0.240 Sum_probs=61.1
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEE--cceEec--C-CccccccCCCCCCEEEEEe
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKK--WYTIFK--D-HIRIMDYEIHDGMNLELYY 72 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif--~Gk~L~--D-~~tL~~y~I~~g~ti~L~~ 72 (73)
..|-||.++|+.+.-...+++||.+|.+-|....+.+...-.|+- --|.|. | ..||++.|+.+..+|++..
T Consensus 14 t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~ 89 (109)
T 2dzk_A 14 ARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLP 89 (109)
T ss_dssp EEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEE
Confidence 468899999999999999999999999999999888877778864 566776 3 6799999999999998763
No 116
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=97.84 E-value=7.5e-05 Score=47.85 Aligned_cols=60 Identities=25% Similarity=0.294 Sum_probs=46.8
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHHh--CCCCcc------EEEEE----cce-EecCCc-------------cccccCCCCC
Q psy4181 12 KKVRVKCNPDDTIGDLKKLIAAQT--GTRWEK------IVLKK----WYT-IFKDHI-------------RIMDYEIHDG 65 (73)
Q Consensus 12 ~~~~v~v~~~~TV~~lK~~I~~~~--gip~~~------QrLif----~Gk-~L~D~~-------------tL~~y~I~~g 65 (73)
..+++.|-.-|||.++|+||-+.. |+|..+ --|=+ +|+ .|.|.+ ||+.|+|.||
T Consensus 41 ~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~Dg 120 (138)
T 2r2o_A 41 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 120 (138)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCTT
T ss_pred CceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCCC
Confidence 578999999999999999999985 776643 33422 344 476642 8999999999
Q ss_pred CEEEEE
Q psy4181 66 MNLELY 71 (73)
Q Consensus 66 ~ti~L~ 71 (73)
.+|-|+
T Consensus 121 a~l~l~ 126 (138)
T 2r2o_A 121 ATVALV 126 (138)
T ss_dssp CEEEEE
T ss_pred CEEEEE
Confidence 999886
No 117
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=97.77 E-value=0.00011 Score=49.16 Aligned_cols=61 Identities=20% Similarity=0.126 Sum_probs=50.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCCc-cEEEE--E-c--ceEecC-CccccccCCCCCCEEEEEeC
Q psy4181 13 KVRVKCNPDDTIGDLKKLIAAQTGTRWE-KIVLK--K-W--YTIFKD-HIRIMDYEIHDGMNLELYYQ 73 (73)
Q Consensus 13 ~~~v~v~~~~TV~~lK~~I~~~~gip~~-~QrLi--f-~--Gk~L~D-~~tL~~y~I~~g~ti~L~~~ 73 (73)
..++.++..+||.+|++++....++|++ .-||- + . ...|.| +.||++++|.+|..|-+++|
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r 208 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQK 208 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEEC
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEe
Confidence 4567889999999999999999999998 68883 3 2 235666 56999999999999998875
No 118
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=97.76 E-value=0.00019 Score=44.62 Aligned_cols=69 Identities=13% Similarity=0.081 Sum_probs=59.7
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEE--EcceEe--cC-CccccccCCCCCCEEEEE
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLK--KWYTIF--KD-HIRIMDYEIHDGMNLELY 71 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLi--f~Gk~L--~D-~~tL~~y~I~~g~ti~L~ 71 (73)
..|-||.++|+.+.-.+.+++||.+|.+-|... |.++..-.|+ |-.|.| .| ..||++.|+.+..+|++.
T Consensus 44 t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~ 117 (124)
T 1wj4_A 44 AQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 117 (124)
T ss_dssp EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEE
Confidence 468899999999999999999999999999887 8888888887 457888 44 789999999998888775
No 119
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=97.72 E-value=0.00021 Score=48.27 Aligned_cols=61 Identities=20% Similarity=0.186 Sum_probs=51.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCCc-cEEEEE-c----ceEecC-CccccccCCCCCCEEEEEeC
Q psy4181 13 KVRVKCNPDDTIGDLKKLIAAQTGTRWE-KIVLKK-W----YTIFKD-HIRIMDYEIHDGMNLELYYQ 73 (73)
Q Consensus 13 ~~~v~v~~~~TV~~lK~~I~~~~gip~~-~QrLif-~----Gk~L~D-~~tL~~y~I~~g~ti~L~~~ 73 (73)
.+++.++..+||.+|++.+....++|++ .-||-. . ...|.| +.||+++++.+|..|-++.|
T Consensus 153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r 220 (231)
T 3jyu_A 153 VLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQ 220 (231)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEEC
T ss_pred eEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEe
Confidence 3556779999999999999999999998 688844 3 346776 58999999999999988865
No 120
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=97.63 E-value=0.00044 Score=48.78 Aligned_cols=61 Identities=11% Similarity=0.060 Sum_probs=52.8
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhC----CCCccEEEEE------cceEecCCccccccCCCCCCEEEEE
Q psy4181 11 GKKVRVKCNPDDTIGDLKKLIAAQTG----TRWEKIVLKK------WYTIFKDHIRIMDYEIHDGMNLELY 71 (73)
Q Consensus 11 G~~~~v~v~~~~TV~~lK~~I~~~~g----ip~~~QrLif------~Gk~L~D~~tL~~y~I~~g~ti~L~ 71 (73)
+.+.++.++|+.||.++-.+|.|+.. .+++.--|.- .|+.|++.+||+.|++++|+.++..
T Consensus 12 ~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~ 82 (371)
T 3ivf_A 12 NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYR 82 (371)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEE
T ss_pred ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeecc
Confidence 77888999999999999999988863 4688878866 5788999999999999999998753
No 121
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=97.43 E-value=0.0011 Score=41.22 Aligned_cols=61 Identities=25% Similarity=0.269 Sum_probs=46.5
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHH--hCCCCc------cEEEEE-cc---e-EecCC-------------ccccccCCCC
Q psy4181 11 GKKVRVKCNPDDTIGDLKKLIAAQ--TGTRWE------KIVLKK-WY---T-IFKDH-------------IRIMDYEIHD 64 (73)
Q Consensus 11 G~~~~v~v~~~~TV~~lK~~I~~~--~gip~~------~QrLif-~G---k-~L~D~-------------~tL~~y~I~~ 64 (73)
...+++.|-.-|||.++|+||-+. .|.|.. +..|=+ .| + .|.|. -||++|+|.|
T Consensus 26 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 105 (117)
T 4e74_A 26 SPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD 105 (117)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred CCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence 445888999999999999999987 377754 556644 33 3 36552 3799999999
Q ss_pred CCEEEEE
Q psy4181 65 GMNLELY 71 (73)
Q Consensus 65 g~ti~L~ 71 (73)
|+++-|+
T Consensus 106 gatl~l~ 112 (117)
T 4e74_A 106 GSVVALV 112 (117)
T ss_dssp TCEEEEE
T ss_pred CCEEEEE
Confidence 9999886
No 122
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.42 E-value=0.0012 Score=39.89 Aligned_cols=70 Identities=11% Similarity=-0.026 Sum_probs=58.5
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEE--EcceEec--CCccccccCCCCCCEEEEEe
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLK--KWYTIFK--DHIRIMDYEIHDGMNLELYY 72 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLi--f~Gk~L~--D~~tL~~y~I~~g~ti~L~~ 72 (73)
..|-||.++|+.+.-...+++||.+|.+-|... +..+..-+|+ |-.|.|. ...||++.|+.+..+|.+.-
T Consensus 24 ~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~ 97 (109)
T 2cr5_A 24 VTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE 97 (109)
T ss_dssp EEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence 478899999999999999999999999999865 5566677776 4467786 37899999999999998763
No 123
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=97.28 E-value=0.0031 Score=39.79 Aligned_cols=60 Identities=27% Similarity=0.386 Sum_probs=44.0
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHH----hCCCCc----cEEEEE----cceEecCC--------------ccccccCCCCC
Q psy4181 12 KKVRVKCNPDDTIGDLKKLIAAQ----TGTRWE----KIVLKK----WYTIFKDH--------------IRIMDYEIHDG 65 (73)
Q Consensus 12 ~~~~v~v~~~~TV~~lK~~I~~~----~gip~~----~QrLif----~Gk~L~D~--------------~tL~~y~I~~g 65 (73)
..+++.|-.-|||.++|+||-+. .|.|.. ...|=+ +|++|.|. -||+.|+|.||
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 57899999999999999999876 377653 344433 22344431 26788999999
Q ss_pred CEEEEE
Q psy4181 66 MNLELY 71 (73)
Q Consensus 66 ~ti~L~ 71 (73)
++|-|+
T Consensus 119 atlal~ 124 (126)
T 3kuz_A 119 STIKVF 124 (126)
T ss_dssp CEEEEE
T ss_pred CEEEEe
Confidence 999875
No 124
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=97.27 E-value=0.0012 Score=41.10 Aligned_cols=67 Identities=15% Similarity=0.171 Sum_probs=55.0
Q ss_pred EEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHH-hCCCCccEEEEE--cceEecC-CccccccCCCCCCEEE
Q psy4181 3 EITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQ-TGTRWEKIVLKK--WYTIFKD-HIRIMDYEIHDGMNLE 69 (73)
Q Consensus 3 ~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~-~gip~~~QrLif--~Gk~L~D-~~tL~~y~I~~g~ti~ 69 (73)
.|-||.++|+.+.-.+.+++||.+|.+-|... .+.+.....|+. -.|.|.| +.||++.|+.+..+|+
T Consensus 54 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl~ 124 (127)
T 1s3s_G 54 NIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIVQ 124 (127)
T ss_dssp CEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEEE
Confidence 57789999999999999999999999999886 345566777764 5788876 6899999999865553
No 125
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=97.06 E-value=0.011 Score=32.89 Aligned_cols=61 Identities=26% Similarity=0.235 Sum_probs=46.1
Q ss_pred CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181 1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY 71 (73)
Q Consensus 1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~ 71 (73)
+|+|+|+-..+ ...+++....||.+|.+.+ |++++.-....+|+.+..+. -+++|+.|.++
T Consensus 4 ~m~i~vNg~~~-~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii 64 (70)
T 1ryj_A 4 GMKFTVITDDG-KKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVI 64 (70)
T ss_dssp CEEEEEEETTE-EEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEE
T ss_pred eEEEEEeCccC-ceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEE
Confidence 47888875332 3456777888999998875 77888777788999986554 57999999875
No 126
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=97.04 E-value=0.0046 Score=47.64 Aligned_cols=60 Identities=25% Similarity=0.294 Sum_probs=46.7
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHH--hCCCCc------cEEEEE----cce-EecCCc-------------cccccCCCCC
Q psy4181 12 KKVRVKCNPDDTIGDLKKLIAAQ--TGTRWE------KIVLKK----WYT-IFKDHI-------------RIMDYEIHDG 65 (73)
Q Consensus 12 ~~~~v~v~~~~TV~~lK~~I~~~--~gip~~------~QrLif----~Gk-~L~D~~-------------tL~~y~I~~g 65 (73)
..+++.|-.-|||.++|+||-+. .|.|.. +..|=+ .|+ .|.|.+ ||++|+|.||
T Consensus 274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 45888999999999999999977 477764 444533 233 477754 8999999999
Q ss_pred CEEEEE
Q psy4181 66 MNLELY 71 (73)
Q Consensus 66 ~ti~L~ 71 (73)
+||-|+
T Consensus 354 a~v~L~ 359 (644)
T 3hm6_X 354 ATVALV 359 (644)
T ss_dssp CEEEEE
T ss_pred cEEEEE
Confidence 999875
No 127
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=96.87 E-value=0.0035 Score=35.67 Aligned_cols=60 Identities=10% Similarity=0.021 Sum_probs=45.4
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY 71 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~ 71 (73)
|+|.||-.......+++++..||++|=++ .|+|++.-...-+|+.+..+. +.+|++|.+.
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~~----Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv 60 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVRA----VDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVL 60 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHHT----TCCCSSCCCEECCCCCCCTTS------SSCCCCEEEC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHHH----cCCCcceEEEEECCEECCHHH------CCCCCEEEEE
Confidence 67888876556666899999999987654 899999987677999885444 2458887653
No 128
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=96.81 E-value=0.017 Score=44.37 Aligned_cols=69 Identities=23% Similarity=0.318 Sum_probs=49.6
Q ss_pred EEEEEcCC---CCEEEEEeCCCCcHHHHHHHHHHHh--CCCC------ccEEEEE-c---ce-EecCC------------
Q psy4181 3 EITCNDRL---GKKVRVKCNPDDTIGDLKKLIAAQT--GTRW------EKIVLKK-W---YT-IFKDH------------ 54 (73)
Q Consensus 3 ~i~vk~~~---G~~~~v~v~~~~TV~~lK~~I~~~~--gip~------~~QrLif-~---Gk-~L~D~------------ 54 (73)
.++|-... ...+++.|-.-|||.++|+||-+.. |.|. ++..|=+ . |+ .|.|.
T Consensus 235 tL~v~~~~~~~~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkr 314 (627)
T 3ig3_A 235 TLHCVCPESEGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKR 314 (627)
T ss_dssp EEEEECTTTC--CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEE
T ss_pred EEEEeccCCCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeE
Confidence 45554333 3678899999999999999999884 6664 4555543 2 33 45552
Q ss_pred -ccccccCCCCCCEEEEE
Q psy4181 55 -IRIMDYEIHDGMNLELY 71 (73)
Q Consensus 55 -~tL~~y~I~~g~ti~L~ 71 (73)
-||++|+|.||.+|-|+
T Consensus 315 LNTL~HY~V~Dga~v~L~ 332 (627)
T 3ig3_A 315 VNSLAHYQVTDGSLVALV 332 (627)
T ss_dssp CCBTTTTTCCTTCEEEEE
T ss_pred ecchhhcCCCCCceEEEE
Confidence 37999999999999875
No 129
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=96.61 E-value=0.0028 Score=39.68 Aligned_cols=34 Identities=12% Similarity=0.154 Sum_probs=30.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEE
Q psy4181 13 KVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKK 46 (73)
Q Consensus 13 ~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif 46 (73)
..++.|.-+.|+.+||++|++..|+|+++|||-.
T Consensus 57 ~~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~ 90 (130)
T 2kvr_A 57 YTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP 90 (130)
T ss_dssp CEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred cceEEEeccCcHHHHHHHHHHHhCCCcccEEEEE
Confidence 4568889999999999999999999999999954
No 130
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=96.53 E-value=0.013 Score=34.40 Aligned_cols=61 Identities=23% Similarity=0.218 Sum_probs=43.1
Q ss_pred CEEEEEEcCCCCEEEEEeCCC-CcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181 1 MIEITCNDRLGKKVRVKCNPD-DTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY 71 (73)
Q Consensus 1 ~~~i~vk~~~G~~~~v~v~~~-~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~ 71 (73)
||+|+| +|+.. ++++. .||.+|.+.+ |++++.-..-.+|+.+.. ...++.-+++|+.|.++
T Consensus 20 ~M~I~v---NGe~~--el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~-~~~~~~~L~dGD~Vei~ 81 (87)
T 1tyg_B 20 RHMLQL---NGKDV--KWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGK-ERYHEVELCDRDVIEIV 81 (87)
T ss_dssp --CEEE---TTEEE--CCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECG-GGTTTSBCCSSSEEEEE
T ss_pred ceEEEE---CCEEE--ECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECCh-hhcCCcCCCCCCEEEEE
Confidence 466776 57654 45666 8999998875 777777777789988752 23445679999999876
No 131
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=95.98 E-value=0.057 Score=31.60 Aligned_cols=68 Identities=18% Similarity=0.166 Sum_probs=42.3
Q ss_pred CEEEEEEcC------C-C-CEEEEEeC--CCCcHHHHHHHHHHHhCCC-Ccc------E-----E-EEEcceEecCCccc
Q psy4181 1 MIEITCNDR------L-G-KKVRVKCN--PDDTIGDLKKLIAAQTGTR-WEK------I-----V-LKKWYTIFKDHIRI 57 (73)
Q Consensus 1 ~~~i~vk~~------~-G-~~~~v~v~--~~~TV~~lK~~I~~~~gip-~~~------Q-----r-Lif~Gk~L~D~~tL 57 (73)
||+|.||.. . | +..++++. +..||++|.+.+.++..-. ++- . . ..-+|+..+ -+
T Consensus 1 mM~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~---~~ 77 (99)
T 2qjl_A 1 MVNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWE---LE 77 (99)
T ss_dssp CEEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGG---GG
T ss_pred CcEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEcc---cc
Confidence 788888754 4 3 56667776 6789999999999886321 111 1 1 122443221 12
Q ss_pred --cccCCCCCCEEEEE
Q psy4181 58 --MDYEIHDGMNLELY 71 (73)
Q Consensus 58 --~~y~I~~g~ti~L~ 71 (73)
.++-+++|+.|.+.
T Consensus 78 ~~~d~~L~dgDeVa~~ 93 (99)
T 2qjl_A 78 GEKDYILEDGDIISFT 93 (99)
T ss_dssp TGGGCBCCTTCEEEEE
T ss_pred CCCCcCcCCCCEEEEE
Confidence 35679999998764
No 132
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=95.67 E-value=0.12 Score=35.28 Aligned_cols=71 Identities=14% Similarity=0.131 Sum_probs=54.8
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCcc-EEEEE--cce--EecCCccccccCCCCCCEEEEEeC
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEK-IVLKK--WYT--IFKDHIRIMDYEIHDGMNLELYYQ 73 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~-QrLif--~Gk--~L~D~~tL~~y~I~~g~ti~L~~~ 73 (73)
+.+.|..++| ++.+.|+++.|+.+|=++|+++.|+.-.+ --|.| .|. .|+...+|.+.+++.+....|.|+
T Consensus 23 ~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr 98 (314)
T 1h4r_A 23 FTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFL 98 (314)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEE
T ss_pred eEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEE
Confidence 5677888898 88899999999999999999999998532 24444 332 477788888887777777777664
No 133
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=95.58 E-value=0.061 Score=31.44 Aligned_cols=44 Identities=14% Similarity=0.196 Sum_probs=37.8
Q ss_pred EEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcc
Q psy4181 3 EITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWY 48 (73)
Q Consensus 3 ~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~G 48 (73)
.|.|-.- -++.+.|.+..+..+|.++|+++.++|++.-.|-|.-
T Consensus 7 ~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~ 50 (83)
T 1oey_A 7 TLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP 50 (83)
T ss_dssp EEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred EEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence 4444442 6999999999999999999999999999999998854
No 134
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=95.58 E-value=0.029 Score=31.60 Aligned_cols=60 Identities=10% Similarity=0.132 Sum_probs=44.0
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEe
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYY 72 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~ 72 (73)
|+|.| +|+... + +..||.+|-+. .|++++.--.-.+|..+. ....+++-+++|+.|.++.
T Consensus 1 M~I~v---NG~~~e--~-~~~Tl~~LL~~----l~~~~~~vAV~vNg~iVp-r~~~~~~~L~dGD~veIv~ 60 (73)
T 2kl0_A 1 MLVTI---NGEQRE--V-QSASVAALMTE----LDCTGGHFAVALNYDVVP-RGKWDETPVTAGDEIEILT 60 (73)
T ss_dssp CCEEE---TTEEEC--C-CCSBHHHHHHH----TTCCSSSCEEEESSSEEC-HHHHTTCBCCTTCEEEEEC
T ss_pred CEEEE---CCEEEE--c-CCCcHHHHHHH----cCCCCCcEEEEECCEECC-hHHcCcccCCCCCEEEEEc
Confidence 45666 577554 4 56899988764 789998888888999884 2334456789999998763
No 135
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=95.56 E-value=0.1 Score=35.21 Aligned_cols=71 Identities=14% Similarity=0.115 Sum_probs=54.3
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCcc-EEEEE---cc--eEecCCccccccCCCCCCEEEEEeC
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEK-IVLKK---WY--TIFKDHIRIMDYEIHDGMNLELYYQ 73 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~-QrLif---~G--k~L~D~~tL~~y~I~~g~ti~L~~~ 73 (73)
|.+.|..++| +..+.|+++.|+.+|=++|+++.|+.... --|.| +| ..|+...++.+.+++.+....|.||
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~fr 78 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFR 78 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEE
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEEE
Confidence 6788888888 78899999999999999999999997643 13433 23 2466677888777777777777664
No 136
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=95.54 E-value=0.07 Score=36.95 Aligned_cols=45 Identities=11% Similarity=-0.071 Sum_probs=38.3
Q ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcc-eEecCC
Q psy4181 10 LGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWY-TIFKDH 54 (73)
Q Consensus 10 ~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~G-k~L~D~ 54 (73)
.-....+.+.+..|+.++++++++..|++++.|.|+|.+ ...-|.
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~ 365 (396)
T 4eut_A 320 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEP 365 (396)
T ss_dssp TTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCS
T ss_pred cceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCC
Confidence 556677889999999999999999999999999999988 343343
No 137
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=95.43 E-value=0.064 Score=29.13 Aligned_cols=60 Identities=17% Similarity=0.254 Sum_probs=42.4
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY 71 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~ 71 (73)
|+|+| +|+.. ++.+..||.+|.+.+ +++++.-....+|+.... ....+.-+++|+.|.++
T Consensus 1 m~i~v---Ng~~~--~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~-~~~~~~~L~~gD~v~i~ 60 (66)
T 1f0z_A 1 MQILF---NDQAM--QCAAGQTVHELLEQL----DQRQAGAALAINQQIVPR-EQWAQHIVQDGDQILLF 60 (66)
T ss_dssp CCEEE---SSCEE--CCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECH-HHHTTCCCCTTEEECEE
T ss_pred CEEEE---CCEEE--EcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCc-hhcCCcCCCCCCEEEEE
Confidence 35555 67765 456778999998876 677777777779988752 22334568999998775
No 138
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=95.38 E-value=0.091 Score=29.09 Aligned_cols=64 Identities=8% Similarity=0.077 Sum_probs=41.0
Q ss_pred EEEEEcCCCC-EEEEEeCCCCcHHHHHHHHHHHhCCCC--ccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181 3 EITCNDRLGK-KVRVKCNPDDTIGDLKKLIAAQTGTRW--EKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY 71 (73)
Q Consensus 3 ~i~vk~~~G~-~~~v~v~~~~TV~~lK~~I~~~~gip~--~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~ 71 (73)
.|.||....- .-++++ +..||.+|.+.+..+.+... ..-+..-+|+...+. +.-+++|+.|.+.
T Consensus 2 ~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~~----~~~l~~gDeV~i~ 68 (74)
T 3rpf_C 2 MVEVRFFGPIKEENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDNL----NTPLKDGDVISLL 68 (74)
T ss_dssp EEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECCT----TCCCCTTCEEEEE
T ss_pred EEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCCC----CcCCCCCCEEEEE
Confidence 4666655321 134666 56799999999987644332 334445588775443 4569999999875
No 139
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=95.13 E-value=0.24 Score=29.03 Aligned_cols=60 Identities=17% Similarity=0.271 Sum_probs=50.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHh-CCC----Cc-cEEEEEcc--eEecCCccccccCCCCCCEEEEEe
Q psy4181 13 KVRVKCNPDDTIGDLKKLIAAQT-GTR----WE-KIVLKKWY--TIFKDHIRIMDYEIHDGMNLELYY 72 (73)
Q Consensus 13 ~~~v~v~~~~TV~~lK~~I~~~~-gip----~~-~QrLif~G--k~L~D~~tL~~y~I~~g~ti~L~~ 72 (73)
..-+.|+..+|+.++-++++... |.- |. --|..+.| +.|..+.|+++.||++-.+|...|
T Consensus 14 ~~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~ 81 (83)
T 2inc_C 14 IQLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIF 81 (83)
T ss_dssp EEEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEE
T ss_pred EEEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEE
Confidence 34578999999999999999873 432 23 45778888 999999999999999999999987
No 140
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=95.05 E-value=0.019 Score=44.05 Aligned_cols=52 Identities=15% Similarity=0.180 Sum_probs=43.3
Q ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEE-cceEecCCcccccc
Q psy4181 9 RLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKK-WYTIFKDHIRIMDY 60 (73)
Q Consensus 9 ~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif-~Gk~L~D~~tL~~y 60 (73)
.+++...+.+.++.|+.+++..|++..|||++.|.|++ .|-++.......+|
T Consensus 319 ~~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 319 VSGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp SSSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred cccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhh
Confidence 36677789999999999999999999999999999999 55556656566654
No 141
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.02 E-value=0.05 Score=32.37 Aligned_cols=63 Identities=14% Similarity=0.183 Sum_probs=54.3
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEE---cceEecCCccccccCCCC
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKK---WYTIFKDHIRIMDYEIHD 64 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif---~Gk~L~D~~tL~~y~I~~ 64 (73)
+.+-|+.+...+.-+.|+|..+..++--.|.++-..+|+.-.|.- ++..|+=..+|.+|||++
T Consensus 11 vRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 11 VRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp EEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred EEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 355677766677778999999999999999999999999999976 566788899999999997
No 142
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=94.95 E-value=0.15 Score=29.99 Aligned_cols=61 Identities=11% Similarity=0.222 Sum_probs=51.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHh-CCC----CccEEEEEcceE--ecCCccccccCCCCCCEEEEEeC
Q psy4181 13 KVRVKCNPDDTIGDLKKLIAAQT-GTR----WEKIVLKKWYTI--FKDHIRIMDYEIHDGMNLELYYQ 73 (73)
Q Consensus 13 ~~~v~v~~~~TV~~lK~~I~~~~-gip----~~~QrLif~Gk~--L~D~~tL~~y~I~~g~ti~L~~~ 73 (73)
..-+.|+..+|+.++-++++... |.- |.--|..++|+. |.++.|+++.||++-++|...|.
T Consensus 16 ~~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~~ 83 (84)
T 3ge3_C 16 VQLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVFE 83 (84)
T ss_dssp EEEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEEC
T ss_pred EEEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEEc
Confidence 34578999999999999999873 543 345688899998 99999999999999999999883
No 143
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=94.92 E-value=0.27 Score=28.51 Aligned_cols=65 Identities=12% Similarity=0.138 Sum_probs=44.9
Q ss_pred EEEEEEcC------CC-CEEEEEeCCCCcHHHHHHHHHHHhC-----------CCCccEEEEEcceEecCCccccccCCC
Q psy4181 2 IEITCNDR------LG-KKVRVKCNPDDTIGDLKKLIAAQTG-----------TRWEKIVLKKWYTIFKDHIRIMDYEIH 63 (73)
Q Consensus 2 ~~i~vk~~------~G-~~~~v~v~~~~TV~~lK~~I~~~~g-----------ip~~~QrLif~Gk~L~D~~tL~~y~I~ 63 (73)
|+|.||.. .| ....+++.+..||.+|.+.+..+.. -....-.+.-+|+.... ++-++
T Consensus 10 ~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L~ 84 (98)
T 1vjk_A 10 VKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEELK 84 (98)
T ss_dssp EEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBCC
T ss_pred EEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCCCC
Confidence 55666654 45 4778888888999999999988741 11233445558877652 56789
Q ss_pred CCCEEEEE
Q psy4181 64 DGMNLELY 71 (73)
Q Consensus 64 ~g~ti~L~ 71 (73)
+|+.|.++
T Consensus 85 dGDeV~i~ 92 (98)
T 1vjk_A 85 DGDVVGVF 92 (98)
T ss_dssp TTCEEEEE
T ss_pred CCCEEEEE
Confidence 99999774
No 144
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=94.92 E-value=0.031 Score=41.70 Aligned_cols=33 Identities=12% Similarity=0.165 Sum_probs=30.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEE
Q psy4181 13 KVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLK 45 (73)
Q Consensus 13 ~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLi 45 (73)
..++.|..+.|+.+||+++++..|+|+++|||-
T Consensus 37 ~~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW 69 (530)
T 2ylm_A 37 YTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLW 69 (530)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHTSCGGGEEEE
T ss_pred cceEEEcCcCCHHHHHHHHHHHhCcCcccEEEE
Confidence 346888999999999999999999999999994
No 145
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=94.91 E-value=0.044 Score=31.26 Aligned_cols=62 Identities=15% Similarity=0.147 Sum_probs=43.4
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCC-CccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTR-WEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY 71 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip-~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~ 71 (73)
|+|.| +|+...++..+..||.+|-+. .|++ ++.--.-.+|..+. ....+++-+++|+.|.++
T Consensus 1 M~I~v---NGe~~e~~~~~~~Tl~~LL~~----l~~~~~~~vAVavNg~iVp-r~~~~~~~L~dGD~IEIv 63 (78)
T 2k5p_A 1 MNLTV---NGKPSTVDGAESLNVTELLSA----LKVAQAEYVTVELNGEVLE-REAFDATTVKDGDAVEFL 63 (78)
T ss_dssp CEEEE---TTEEEECSSCSCEEHHHHHHH----HTCSCTTTCCEEETTEECC-TTHHHHCEECSSBCEEEC
T ss_pred CEEEE---CCEEEEcCCCCCCcHHHHHHH----cCCCCCCcEEEEECCEECC-hHHcCcccCCCCCEEEEE
Confidence 46666 577554422166899998765 5888 77777788998874 334455678999998875
No 146
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=94.80 E-value=0.14 Score=30.36 Aligned_cols=59 Identities=15% Similarity=0.186 Sum_probs=51.1
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEEe
Q psy4181 14 VRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYY 72 (73)
Q Consensus 14 ~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~~ 72 (73)
+.-.++-+.++..||+-++.+.|++.+.--..-.+.+|+++.+|-+-+++-.-.|++.-
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinv 63 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSV 63 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEE
T ss_pred hhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEE
Confidence 33456677889999999999999999998887788999999999999999888888753
No 147
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=94.74 E-value=0.27 Score=36.98 Aligned_cols=71 Identities=13% Similarity=0.091 Sum_probs=54.7
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCc-cEEEEEc---c--eEecCCccccccCCCCCCEEEEEeC
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWE-KIVLKKW---Y--TIFKDHIRIMDYEIHDGMNLELYYQ 73 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~-~QrLif~---G--k~L~D~~tL~~y~I~~g~ti~L~~~ 73 (73)
|.+.|-.++| ++.+.|+++.|+.+|=..|+.+.|++-. ---|.|. | .+|+...++.+.+++.+....|.|+
T Consensus 5 i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~FR 81 (575)
T 2i1j_A 5 MNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFR 81 (575)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEEE
T ss_pred EEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEEE
Confidence 5678888888 7889999999999999999999999743 2344442 2 3566677888877777777777764
No 148
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=94.68 E-value=0.3 Score=27.85 Aligned_cols=60 Identities=15% Similarity=0.113 Sum_probs=37.9
Q ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHhC-C-----C-------CccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181 10 LGKKVRVKCNPDDTIGDLKKLIAAQTG-T-----R-------WEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY 71 (73)
Q Consensus 10 ~G~~~~v~v~~~~TV~~lK~~I~~~~g-i-----p-------~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~ 71 (73)
.|+...++. +..||.+|.+.+.++.. . . ...-++.-+|+...+..- .++-+++|+.|.++
T Consensus 15 ~g~~~~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~-~~~~L~~gDeV~i~ 87 (93)
T 3dwg_C 15 TGGQKSVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGG-LATAIADGDSVTIL 87 (93)
T ss_dssp TTTCSEEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTG-GGCBCCTTCEEEEE
T ss_pred hCCCeEEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCC-CCcCCCCCCEEEEE
Confidence 554445665 45799999999998752 0 0 012344558877654222 24568999999875
No 149
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=94.63 E-value=0.08 Score=31.90 Aligned_cols=52 Identities=10% Similarity=0.053 Sum_probs=41.5
Q ss_pred cCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEE-------cceEecCCccccc
Q psy4181 8 DRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKK-------WYTIFKDHIRIMD 59 (73)
Q Consensus 8 ~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif-------~Gk~L~D~~tL~~ 59 (73)
..+|...++.|++++|+.++=+.+.++.+...+.--=++ .-|.++|++.|-+
T Consensus 16 ~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vve 74 (100)
T 1wgr_A 16 SEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVE 74 (100)
T ss_dssp ETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHH
T ss_pred ecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHH
Confidence 368999999999999999999999999988855442223 5577899886654
No 150
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=94.40 E-value=0.38 Score=29.12 Aligned_cols=68 Identities=16% Similarity=0.127 Sum_probs=42.0
Q ss_pred EEEEEEcC------CC--CEEEEEeCC---CCcHHHHHHHHHHHhCCCCccEEEEE-cce------EecCCc---cc--c
Q psy4181 2 IEITCNDR------LG--KKVRVKCNP---DDTIGDLKKLIAAQTGTRWEKIVLKK-WYT------IFKDHI---RI--M 58 (73)
Q Consensus 2 ~~i~vk~~------~G--~~~~v~v~~---~~TV~~lK~~I~~~~gip~~~QrLif-~Gk------~L~D~~---tL--~ 58 (73)
|+|.|+.+ +| +.+.++++. ..||++|-+.+.++. |....+|+. +|+ .|-|++ -| .
T Consensus 12 M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlVN~~di~~l~gl 89 (114)
T 1wgk_A 12 LCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNL--LKERPELFIQGDSVRPGILVLINDADWELLGEL 89 (114)
T ss_dssp EEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTT--CCSCHHHHCCSSSCCSSEEEEESSSBHHHHCTT
T ss_pred cEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHc--cchhHhhCccCCcccCCeEEEECCeeeeccCCc
Confidence 88888866 45 366688773 369999999998876 222222221 121 222222 33 3
Q ss_pred ccCCCCCCEEEEE
Q psy4181 59 DYEIHDGMNLELY 71 (73)
Q Consensus 59 ~y~I~~g~ti~L~ 71 (73)
+|-+++|+.|.+.
T Consensus 90 dt~L~dGDeV~ii 102 (114)
T 1wgk_A 90 DYQLQDQDSILFI 102 (114)
T ss_dssp TCBCCSSEEEEEE
T ss_pred CcCCCCCCEEEEe
Confidence 5789999998763
No 151
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=94.19 E-value=0.38 Score=27.11 Aligned_cols=57 Identities=21% Similarity=0.284 Sum_probs=40.5
Q ss_pred CC-CEEEEEeCCCCcHHHHHHHHHHHhC-CC----------CccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181 10 LG-KKVRVKCNPDDTIGDLKKLIAAQTG-TR----------WEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY 71 (73)
Q Consensus 10 ~G-~~~~v~v~~~~TV~~lK~~I~~~~g-ip----------~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~ 71 (73)
.| +...+++....||.+|.+.+.++.. +. ...-++.-+|+.... ++-+++|+.|.++
T Consensus 15 ~g~~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~ 83 (89)
T 3po0_A 15 AGSRTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALF 83 (89)
T ss_dssp HTCSEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEE
T ss_pred hCCCeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEE
Confidence 45 6778888888899999999988752 10 011345558887764 4568999999875
No 152
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=93.95 E-value=0.42 Score=28.97 Aligned_cols=69 Identities=14% Similarity=0.184 Sum_probs=52.8
Q ss_pred EEEEEEcCCC---CEEEEEeCCCCcHHHHHHHHHHHhCCCCc--cEEEEEcc---eEecCCccccccCCCCCCEEEE
Q psy4181 2 IEITCNDRLG---KKVRVKCNPDDTIGDLKKLIAAQTGTRWE--KIVLKKWY---TIFKDHIRIMDYEIHDGMNLEL 70 (73)
Q Consensus 2 ~~i~vk~~~G---~~~~v~v~~~~TV~~lK~~I~~~~gip~~--~QrLif~G---k~L~D~~tL~~y~I~~g~ti~L 70 (73)
..|+|.+.+. ...++.|..+.-|+-|-.++-|+.+++-+ .--|-.-- -.|+-..||..|||+....++.
T Consensus 20 L~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~f 96 (102)
T 2kmc_A 20 LVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLF 96 (102)
T ss_dssp EEEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEE
T ss_pred EEEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeec
Confidence 4689999764 67888999889999999999998877643 33333321 1357789999999999998875
No 153
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=93.26 E-value=0.7 Score=27.10 Aligned_cols=43 Identities=12% Similarity=0.067 Sum_probs=35.1
Q ss_pred EEEcC-CCCEEEEEeCCCCcHHHHHHHHHHHhCCCCcc-EEEEEc
Q psy4181 5 TCNDR-LGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEK-IVLKKW 47 (73)
Q Consensus 5 ~vk~~-~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~-QrLif~ 47 (73)
.||.. .|....+.++++.+-.+|.+++.++.+++.++ -.+.|-
T Consensus 8 kvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~ 52 (89)
T 1vd2_A 8 RVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWI 52 (89)
T ss_dssp EEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEEC
T ss_pred EEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEE
Confidence 34433 68999999999999999999999999998776 455553
No 154
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=93.01 E-value=0.36 Score=26.60 Aligned_cols=56 Identities=21% Similarity=0.264 Sum_probs=37.7
Q ss_pred CC-CEEEEEeCCCCcHHHHHHHHHHHhC-----CCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181 10 LG-KKVRVKCNPDDTIGDLKKLIAAQTG-----TRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY 71 (73)
Q Consensus 10 ~G-~~~~v~v~~~~TV~~lK~~I~~~~g-----ip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~ 71 (73)
.| ....++ .+..||.+|.+.+..+.. ++...-....+|+.... +.-+++|+.|.++
T Consensus 14 ~g~~~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~ 75 (81)
T 1fm0_D 14 VGTDATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFF 75 (81)
T ss_dssp HTCSEEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEE
T ss_pred hCCCeEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEe
Confidence 45 355566 567899999999876531 22233456668887742 4568999999875
No 155
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=92.82 E-value=0.27 Score=33.66 Aligned_cols=60 Identities=13% Similarity=-0.016 Sum_probs=46.4
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCcc-EEEEEc---c--eEecCCccccccC
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEK-IVLKKW---Y--TIFKDHIRIMDYE 61 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~-QrLif~---G--k~L~D~~tL~~y~ 61 (73)
+.+.|..++|...++.|+++.|+.+|=++|+++.|+.-.. --|.|. | ..|+...++.+..
T Consensus 18 ~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~ 83 (296)
T 3qij_A 18 GHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQV 83 (296)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC
T ss_pred EEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhc
Confidence 5788999999999999999999999999999999998533 344442 2 3466666666553
No 156
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=92.62 E-value=0.42 Score=26.11 Aligned_cols=54 Identities=7% Similarity=0.013 Sum_probs=38.3
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHHhCCCCccE--EEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181 12 KKVRVKCNPDDTIGDLKKLIAAQTGTRWEKI--VLKKWYTIFKDHIRIMDYEIHDGMNLELY 71 (73)
Q Consensus 12 ~~~~v~v~~~~TV~~lK~~I~~~~gip~~~Q--rLif~Gk~L~D~~tL~~y~I~~g~ti~L~ 71 (73)
+...+++.+..||.+|.+.+..+.. .+..- .+.-+|+....+ .-+++|+.|.++
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~ 71 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQKS-----DFIQPNDTVALI 71 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECTT-----SEECTTCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCCC-----CCcCCCCEEEEE
Confidence 3567777778899999999887741 11223 566688887643 468999998775
No 157
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=92.38 E-value=0.12 Score=38.44 Aligned_cols=68 Identities=10% Similarity=0.064 Sum_probs=53.4
Q ss_pred EEEEEEcC--CCCEEE----EEeCCCCcHHHHHHHHHHHhCCCCccEEEEEc------ceEec-CCcccccc--CCCCCC
Q psy4181 2 IEITCNDR--LGKKVR----VKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKW------YTIFK-DHIRIMDY--EIHDGM 66 (73)
Q Consensus 2 ~~i~vk~~--~G~~~~----v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~------Gk~L~-D~~tL~~y--~I~~g~ 66 (73)
+-||+|-- ..+++. +-|+.+++|.++-..|.++.|+|++.--.+|. ..+|+ -..|+++. .|++|+
T Consensus 131 iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~~Gd 210 (530)
T 2ylm_A 131 VMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMDGD 210 (530)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCCTTE
T ss_pred EEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccccccHHHHHhcccCCC
Confidence 44677754 233433 56789999999999999999999998877785 34577 58899999 999999
Q ss_pred EEE
Q psy4181 67 NLE 69 (73)
Q Consensus 67 ti~ 69 (73)
.|-
T Consensus 211 II~ 213 (530)
T 2ylm_A 211 IIV 213 (530)
T ss_dssp EEE
T ss_pred EEE
Confidence 974
No 158
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=92.35 E-value=0.42 Score=27.85 Aligned_cols=67 Identities=9% Similarity=0.105 Sum_probs=41.7
Q ss_pred CEEEEEEcC------CCC-EEEEEeCCCCcHHHHHHHHHHHh-CCCCc---------cE-------EEEEcceEecCCcc
Q psy4181 1 MIEITCNDR------LGK-KVRVKCNPDDTIGDLKKLIAAQT-GTRWE---------KI-------VLKKWYTIFKDHIR 56 (73)
Q Consensus 1 ~~~i~vk~~------~G~-~~~v~v~~~~TV~~lK~~I~~~~-gip~~---------~Q-------rLif~Gk~L~D~~t 56 (73)
||+|.|+.. .|+ ...++ ..||.+|.+.+..+. +.... .. ....+|+......
T Consensus 3 mm~v~V~~fa~lr~~~g~~~~~l~---~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~- 78 (99)
T 2l52_A 3 MAEVKVKLFANLREAAGTPELPLS---GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLE- 78 (99)
T ss_dssp CCEEEEEECTHHHHHHSSSEEEEE---CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTT-
T ss_pred ceEEEEEEeHHHHHHhCCCeEEEe---CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccC-
Confidence 788888865 343 44444 589999999998874 11110 12 4555776553211
Q ss_pred ccccCCCCCCEEEEE
Q psy4181 57 IMDYEIHDGMNLELY 71 (73)
Q Consensus 57 L~~y~I~~g~ti~L~ 71 (73)
=.++-+++|+.|.++
T Consensus 79 ~~~~~L~~gD~V~i~ 93 (99)
T 2l52_A 79 GLETLLKDSDEIGIL 93 (99)
T ss_dssp STTSCCCTTEEEEEE
T ss_pred CCCCCCCCCCEEEEE
Confidence 124568999999875
No 159
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=92.22 E-value=1.3 Score=30.80 Aligned_cols=69 Identities=13% Similarity=0.108 Sum_probs=50.5
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCcc-EEEEEcc---------eEecCCccccccCCCCCCEEEE
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEK-IVLKKWY---------TIFKDHIRIMDYEIHDGMNLEL 70 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~-QrLif~G---------k~L~D~~tL~~y~I~~g~ti~L 70 (73)
+.+.|..++|....+.|+++.|+.++=++|+++.|+.... --|.+.. +.|+-..++.+-+..+..++++
T Consensus 86 ~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~f 164 (371)
T 3ivf_A 86 RPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLLL 164 (371)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEEE
T ss_pred eEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEEE
Confidence 5677889999999999999999999999999999987432 2343321 3455566666666666666554
No 160
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=92.19 E-value=0.33 Score=33.76 Aligned_cols=56 Identities=11% Similarity=0.109 Sum_probs=40.8
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEc-------ceEecCCccccc
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKW-------YTIFKDHIRIMD 59 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~-------Gk~L~D~~tL~~ 59 (73)
++||+ .+|.+.+|.|+|++|+++|=+.+.++.+.+.+.---+|. -|+|+|++.+-+
T Consensus 34 vkv~~--~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~~l~lER~ledhE~V~d 96 (281)
T 4gmv_A 34 IRVHM--SDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVE 96 (281)
T ss_dssp EEEEE--TTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEEEEGGGTEEEECCTTSBHHH
T ss_pred EEEEe--cCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEEEcCCccceeccccchhHHH
Confidence 34555 468999999999999999999999888775444322332 477888776644
No 161
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=92.12 E-value=0.42 Score=25.71 Aligned_cols=61 Identities=16% Similarity=0.131 Sum_probs=37.1
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY 71 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~ 71 (73)
|.|.|..++|+.. ++....|+.++-+.+....+ ..---...+|+...= ++-+++|+.|.++
T Consensus 1 m~i~i~~p~g~~~--~~~~g~T~~dla~~i~~~l~--~~~vaa~vNg~lvdl-----~~~L~~~~~Veiv 61 (73)
T 2kmm_A 1 MEVMVFTPKGEIK--RLPQGATALDFAYSLHSDLG--DHCIGAKVNHKLVPL-----SYVLNSGDQVEVL 61 (73)
T ss_dssp CCEEEECTTCCEE--EECTTCBHHHHHHHHCSHHH--HTEEEEEETTEECCT-----TCBCCSSSBEEEE
T ss_pred CeEEEEcCCCCEE--EcCCCCcHHHHHHHHhhccc--cceEEEEECCEEeCC-----CcCcCCCCEEEEE
Confidence 4567777789875 55677899999777632221 112222457765432 2556778877765
No 162
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=91.98 E-value=0.78 Score=24.52 Aligned_cols=54 Identities=15% Similarity=0.214 Sum_probs=39.6
Q ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181 10 LGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY 71 (73)
Q Consensus 10 ~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~ 71 (73)
+|+... + +..||.+|.+.+ ++++..-....+|+.... ..-.+.-+++|+.|.++
T Consensus 5 Ng~~~~--~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~-~~~~~~~L~dgD~v~i~ 58 (64)
T 2cu3_A 5 NGEPRP--L-EGKTLKEVLEEM----GVELKGVAVLLNEEAFLG-LEVPDRPLRDGDVVEVV 58 (64)
T ss_dssp TTEEEC--C-TTCCHHHHHHHH----TBCGGGEEEEETTEEEEG-GGCCCCCCCTTCEEEEE
T ss_pred CCEEEE--c-CCCcHHHHHHHc----CCCCCcEEEEECCEECCc-cccCCcCCCCCCEEEEE
Confidence 677664 4 568999998876 677777777779988752 23344578999999875
No 163
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=90.04 E-value=0.45 Score=27.80 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=28.3
Q ss_pred CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCc
Q psy4181 1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWE 40 (73)
Q Consensus 1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~ 40 (73)
|++|.+.+.+|+..++++.+..|+.+.= .+.|++..
T Consensus 6 m~~V~~~~~~g~~~~v~~~~g~tLL~aa----~~~gi~i~ 41 (108)
T 2bt6_A 6 KITVHFINRDGETLTTKGKIGDSLLDVV----VQNNLDID 41 (108)
T ss_dssp EEEEEEECTTSCEEEEEEETTCBHHHHH----HHTTCCCT
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHH----HHcCCCCC
Confidence 7899999889999999999999998652 23565544
No 164
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=88.98 E-value=1.3 Score=26.12 Aligned_cols=66 Identities=12% Similarity=0.084 Sum_probs=43.1
Q ss_pred CEEEEEEcCC---CCEEEEEeCCCCcHHHHHHHHHH--H-hCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181 1 MIEITCNDRL---GKKVRVKCNPDDTIGDLKKLIAA--Q-TGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY 71 (73)
Q Consensus 1 ~~~i~vk~~~---G~~~~v~v~~~~TV~~lK~~I~~--~-~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~ 71 (73)
||+|-|=... .+.+.+++.+..||.++=+...- . -.|......+--+|+... .++-+++|+.|.++
T Consensus 12 ~~~v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~-----~d~~L~dGDRVEIy 83 (97)
T 2hj1_A 12 QINIEIAYAFPERYYLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIK-----LTDVLKEGDRIEIY 83 (97)
T ss_dssp EEEEEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCC-----TTCBCCTTCEEEEC
T ss_pred eEEEEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECC-----CCccCCCCCEEEEE
Confidence 4455544332 24567788899999998776432 2 245555566767888776 44557999999874
No 165
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=88.80 E-value=0.11 Score=31.51 Aligned_cols=67 Identities=21% Similarity=0.283 Sum_probs=39.0
Q ss_pred EEEEEEcC------CCCEEEEEeCC----CCcHHHHHHHHHHHhCCCCccEEEEE-cc--e------EecCCc---cc--
Q psy4181 2 IEITCNDR------LGKKVRVKCNP----DDTIGDLKKLIAAQTGTRWEKIVLKK-WY--T------IFKDHI---RI-- 57 (73)
Q Consensus 2 ~~i~vk~~------~G~~~~v~v~~----~~TV~~lK~~I~~~~gip~~~QrLif-~G--k------~L~D~~---tL-- 57 (73)
|+|.||.. .|+...+++++ ..||++|=+.++++. |.+.-+|+- +| . .|-|+. -|
T Consensus 5 m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~--~~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~g 82 (110)
T 2k9x_A 5 NHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNY--VKERPDLLVDQTGQTLRPGILVLVNSCDAEVVGG 82 (110)
T ss_dssp SCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTT--CCSCHHHHBCSSSSSBCTTEEEEESSSBHHHHTS
T ss_pred cEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHc--cccchhhEecCCCcccCCCeEEEECCeeeeccCC
Confidence 45566543 45666677763 359999988888875 222223321 22 1 333332 22
Q ss_pred cccCCCCCCEEEE
Q psy4181 58 MDYEIHDGMNLEL 70 (73)
Q Consensus 58 ~~y~I~~g~ti~L 70 (73)
.+|-+++|++|.+
T Consensus 83 ldt~L~dgD~V~f 95 (110)
T 2k9x_A 83 MDYVLNDGDTVEF 95 (110)
T ss_dssp SCCCCCSSCEEEE
T ss_pred cccCCCCcCEEEE
Confidence 2588999999865
No 166
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=88.58 E-value=0.15 Score=28.47 Aligned_cols=47 Identities=17% Similarity=0.242 Sum_probs=34.7
Q ss_pred EEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEE
Q psy4181 15 RVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLEL 70 (73)
Q Consensus 15 ~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L 70 (73)
.+++.+..||.+|.+.+ |+|++.-.+.-+|+....+ +-+++|+.|.+
T Consensus 24 ~~~~~~~~Tv~dLl~~L----~~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i 70 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV----GFNTESAIAKVNGKVVLED-----DEVKDGDFVEV 70 (77)
T ss_dssp CCCCCSSCCHHHHHHTT----TCSSCSSCEEETTEEECSS-----SCCCSSCCCBC
T ss_pred EEECCCCCcHHHHHHHh----CCCCcCEEEEECCEECCCC-----CCcCCCCEEEE
Confidence 34566778999998764 5777777777799988654 46788887754
No 167
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=88.57 E-value=1.1 Score=32.91 Aligned_cols=45 Identities=13% Similarity=0.125 Sum_probs=37.9
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCC--ccEEEEE
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRW--EKIVLKK 46 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~--~~QrLif 46 (73)
+.+.|..++|....+.|+++.|+.+|-+.|+++.|+.. +---|.+
T Consensus 217 ~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~ 263 (555)
T 3au4_A 217 MTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFE 263 (555)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEE
T ss_pred cceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEE
Confidence 56778889999999999999999999999999999984 3345544
No 168
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=88.32 E-value=1.1 Score=30.58 Aligned_cols=55 Identities=16% Similarity=0.096 Sum_probs=37.1
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEc-------ceEecCCcccc
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKW-------YTIFKDHIRIM 58 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~-------Gk~L~D~~tL~ 58 (73)
+.||. .+|...+|.|+++.|+++|=+.+.++-+.+.+.---+|. -|+|+|++.+-
T Consensus 11 vkv~~--~d~ss~~l~V~~~mta~ev~~~l~~k~~~~~~~~W~l~E~~~~l~lER~ledhE~V~ 72 (256)
T 3hk0_A 11 VKVFS--EDGTSKVVEILADMTARDLCQLLVYKSHSVDDNSWTLVEHHPHLGLERCLEDHELVV 72 (256)
T ss_dssp EEEEE--TTSCEEEEEECTTCBHHHHHHHHHCCC-------EEEEEEETTTTEEEECCTTSBHH
T ss_pred EEEEe--cCCcEEEEEECCCCCHHHHHHHHHHhcCCCCCCCEEEEEECCCcccccccccchhHH
Confidence 34554 568999999999999999999998887765443333444 67788877654
No 169
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=88.00 E-value=0.76 Score=26.87 Aligned_cols=27 Identities=22% Similarity=0.426 Sum_probs=23.7
Q ss_pred CEEEEEEcCCCCEEEEEeCCCCcHHHH
Q psy4181 1 MIEITCNDRLGKKVRVKCNPDDTIGDL 27 (73)
Q Consensus 1 ~~~i~vk~~~G~~~~v~v~~~~TV~~l 27 (73)
|++|.+..++|+..++++.+..|+.+.
T Consensus 5 m~~v~~~~~~g~~~~~~~~~g~tlL~a 31 (109)
T 2y5c_A 5 VVNVVFVDRSGQRIPVSGRVGDNVLHL 31 (109)
T ss_dssp EEEEEEECTTSCEEEEEEETTCBHHHH
T ss_pred cEEEEEEcCCCCEEEEEECCCCcHHHH
Confidence 568888888999999999999999875
No 170
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=87.80 E-value=2.3 Score=23.58 Aligned_cols=55 Identities=16% Similarity=0.250 Sum_probs=35.8
Q ss_pred EEeCCCCcHHHHHHHHHHHhC------C-----CCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181 16 VKCNPDDTIGDLKKLIAAQTG------T-----RWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY 71 (73)
Q Consensus 16 v~v~~~~TV~~lK~~I~~~~g------i-----p~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~ 71 (73)
++++...||.+|.+.+..+.. + ....-....+|+..... .-.++-+++|+.|.++
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~-~~~~~~l~~gD~V~i~ 84 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSM-KGLDTEIKDDDKIDLF 84 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGT-CSSSCBCCTTCEEEEE
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEcccc-CCCCcCCCCCCEEEEe
Confidence 456666899999999987741 0 11334556688766421 1134568999999875
No 171
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=87.44 E-value=0.82 Score=27.97 Aligned_cols=34 Identities=21% Similarity=0.265 Sum_probs=28.0
Q ss_pred CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCC
Q psy4181 1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTR 38 (73)
Q Consensus 1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip 38 (73)
|.+|.+.+++|...++++.+..|+.+. +.+.|++
T Consensus 21 M~~Vt~~~~~G~~~~v~~~~G~tLL~a----a~~~gi~ 54 (126)
T 3hui_A 21 MAKINFVDHTGETRTVEVEEGATVMEA----AIRNAIP 54 (126)
T ss_dssp EEEEEEECTTSCEEEEEEETTSBHHHH----HHTTTCT
T ss_pred ceEEEEEeCCCCEEEEEECCCCcHHHH----HHHcCCC
Confidence 789999999999999999999999875 3335665
No 172
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=87.24 E-value=3.2 Score=27.30 Aligned_cols=49 Identities=12% Similarity=0.054 Sum_probs=37.0
Q ss_pred cCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccE-EEEE------cceEecCCcc
Q psy4181 8 DRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKI-VLKK------WYTIFKDHIR 56 (73)
Q Consensus 8 ~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~Q-rLif------~Gk~L~D~~t 56 (73)
..+|.+.++.|+++.|..+|-+.+.++.+++.+.. .|+= --+.|+|++.
T Consensus 41 ~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~~~~l~E~~~~~~ler~l~d~E~ 96 (291)
T 3tca_A 41 MDDSSTKSLMVDERQLARDVLDNLFEKTHCDCNVDWCLYEIYPELQIERVFEDHEN 96 (291)
T ss_dssp CTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCCTTEEEEEEETTTTEEEECCTTSB
T ss_pred cCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCCCeEEEEeccccccceecccchh
Confidence 45789999999999999999999999999876543 3321 1356776653
No 173
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=87.01 E-value=2 Score=25.46 Aligned_cols=60 Identities=10% Similarity=0.200 Sum_probs=41.9
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCCCCc-----------cEEEEEcc-eEecC------CccccccCCCCCCEEEE
Q psy4181 11 GKKVRVKCNPDDTIGDLKKLIAAQTGTRWE-----------KIVLKKWY-TIFKD------HIRIMDYEIHDGMNLEL 70 (73)
Q Consensus 11 G~~~~v~v~~~~TV~~lK~~I~~~~gip~~-----------~QrLif~G-k~L~D------~~tL~~y~I~~g~ti~L 70 (73)
+....++|+++.|..+|-+.+.++-..... ...|+..+ ..|+. ..+|.+.|+.+|..|++
T Consensus 4 ~~~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~V 81 (98)
T 1y8x_B 4 QLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAV 81 (98)
T ss_dssp -CCCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEE
T ss_pred CCcEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEE
Confidence 345678999999999999999995432222 44555444 23433 45789999999998876
No 174
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=86.86 E-value=1.9 Score=26.92 Aligned_cols=50 Identities=16% Similarity=0.146 Sum_probs=35.3
Q ss_pred CCcHHHHHHHHHHHhCCCC-------ccEEEEEcceEecC--CccccccCCCCCCEEEEE
Q psy4181 21 DDTIGDLKKLIAAQTGTRW-------EKIVLKKWYTIFKD--HIRIMDYEIHDGMNLELY 71 (73)
Q Consensus 21 ~~TV~~lK~~I~~~~gip~-------~~QrLif~Gk~L~D--~~tL~~y~I~~g~ti~L~ 71 (73)
..|..+|-+.+.++.|.+- .++||+|.= -++| ++||++.|+++|+.|-+.
T Consensus 19 ~~TL~dLV~~l~~~~gy~~eiSV~~~~~~rLLyD~-DfDDnl~k~L~dLgv~~gsfLtv~ 77 (127)
T 3onh_A 19 KMKLSDFVVLIREKYSYPQDISLLDASNQRLLFDY-DFEDLNDRTLSEINLGNGSIILFS 77 (127)
T ss_dssp HCBHHHHHHHHHHHHTCCSSEEEEETTTTEEEEET-TBCTTTTSBTTTTTCCTTCEEEEE
T ss_pred ccCHHHHHHHHHHhcCCCCcEEEEecCCCCeEeCC-CccccccCcHHHcCcCCCcEEEEE
Confidence 4699998888988888763 134444432 1233 679999999999988653
No 175
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=86.25 E-value=0.3 Score=30.00 Aligned_cols=66 Identities=15% Similarity=0.205 Sum_probs=48.0
Q ss_pred EEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCc--cEEEEEcc---eEecCCccccccCCCCCCEEE
Q psy4181 3 EITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWE--KIVLKKWY---TIFKDHIRIMDYEIHDGMNLE 69 (73)
Q Consensus 3 ~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~--~QrLif~G---k~L~D~~tL~~y~I~~g~ti~ 69 (73)
.|+|.+.+ ...++.|..+.-|+-|-.++-|+.+++-+ .--|-.-- -.|+-..||+.|||+....++
T Consensus 28 ~V~V~d~~-~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~ 98 (112)
T 2lgx_A 28 SVHVTDVN-RDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQ 98 (112)
T ss_dssp ECCBTTTT-BCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBC
T ss_pred EEEEecCC-ccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhcchhhHhhhceeccccce
Confidence 56676654 78888888889999999999998877643 22222211 135778999999999987664
No 176
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=84.85 E-value=2.2 Score=32.50 Aligned_cols=38 Identities=13% Similarity=0.074 Sum_probs=35.0
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCC
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRW 39 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~ 39 (73)
|.+.|..++|....+.|+++.|+.+|=++|+.+.|+.-
T Consensus 264 i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e 301 (655)
T 3pvl_A 264 IMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKD 301 (655)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSS
T ss_pred eEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcc
Confidence 56788899999999999999999999999999999864
No 177
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=84.51 E-value=1.3 Score=26.46 Aligned_cols=38 Identities=11% Similarity=0.005 Sum_probs=30.7
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCCCCcc-----EEEEEcc
Q psy4181 11 GKKVRVKCNPDDTIGDLKKLIAAQTGTRWEK-----IVLKKWY 48 (73)
Q Consensus 11 G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~-----QrLif~G 48 (73)
+..+++-|.++.+-.+|..+|.++.++++.. .+|-|..
T Consensus 22 ~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkD 64 (98)
T 1q1o_A 22 SEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQD 64 (98)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEEC
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEc
Confidence 6679999999999999999999999986333 3566643
No 178
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=82.79 E-value=5.2 Score=23.32 Aligned_cols=29 Identities=21% Similarity=0.194 Sum_probs=26.8
Q ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHhCCC
Q psy4181 10 LGKKVRVKCNPDDTIGDLKKLIAAQTGTR 38 (73)
Q Consensus 10 ~G~~~~v~v~~~~TV~~lK~~I~~~~gip 38 (73)
.+-.+.+.|.++-+..+|+.+|.+|..+.
T Consensus 20 ~DDIiAIrvP~di~~~~L~dKi~~RLk~~ 48 (85)
T 1ip9_A 20 KDDIFALMLKGDTTYKELRSKIAPRIDTD 48 (85)
T ss_dssp TTCCEEEEECSCCCHHHHHHHHHHHHTSS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 56789999999999999999999999994
No 179
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=82.03 E-value=1.5 Score=24.98 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=27.6
Q ss_pred CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCcc
Q psy4181 1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEK 41 (73)
Q Consensus 1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~ 41 (73)
|++|.+.+..|...++++.+..|+.+.=.. .|+++..
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~g~tlL~a~~~----~gi~i~~ 40 (98)
T 1jq4_A 4 VHTITAVTEDGESLRFECRSDEDVITAALR----QNIFLMS 40 (98)
T ss_dssp EEEEEEEETTTEEEEEEEESCCTHHHHHHH----HTCCCCC
T ss_pred cEEEEEEecCCCcEEEEeCCCChHHHHHHH----cCCCCcC
Confidence 578888877788889999999999876433 4655433
No 180
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=81.45 E-value=3.7 Score=23.47 Aligned_cols=35 Identities=20% Similarity=0.262 Sum_probs=26.9
Q ss_pred CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCC
Q psy4181 1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRW 39 (73)
Q Consensus 1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~ 39 (73)
+++|.+.+.+|+..++++.+..|+.+.=. +.|+++
T Consensus 3 ~~~v~~~~~~g~~~~~~~~~g~tlL~a~~----~~gi~i 37 (103)
T 2wlb_A 3 GIKVFFVTPEGREIMIEGNEGDSILDLAH----ANNIDL 37 (103)
T ss_dssp CEEEEEECTTCCEEEEEECTTCBHHHHHH----HTTCCC
T ss_pred ceEEEEEeCCCCEEEEEECCCCHHHHHHH----HcCCCc
Confidence 46788888899989999999999987633 246553
No 181
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=81.17 E-value=6.1 Score=22.99 Aligned_cols=44 Identities=18% Similarity=0.061 Sum_probs=31.0
Q ss_pred CEEEEEEcCCCCE-EEEEeC-CCCcHHHHHHHHHHHhCCCCccEEE
Q psy4181 1 MIEITCNDRLGKK-VRVKCN-PDDTIGDLKKLIAAQTGTRWEKIVL 44 (73)
Q Consensus 1 ~~~i~vk~~~G~~-~~v~v~-~~~TV~~lK~~I~~~~gip~~~QrL 44 (73)
|--|+-|..+.+. -++.++ +..+|.+||..|.++.+.-...--|
T Consensus 6 mS~V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL 51 (86)
T 2c7h_A 6 MSCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDL 51 (86)
T ss_dssp BEEEEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHTCCTTTEEE
T ss_pred eeEEEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhCCCCCcccE
Confidence 6677888776643 344553 6889999999999998775444433
No 182
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=79.65 E-value=3.3 Score=24.03 Aligned_cols=32 Identities=16% Similarity=0.316 Sum_probs=26.1
Q ss_pred EEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCC
Q psy4181 3 EITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTR 38 (73)
Q Consensus 3 ~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip 38 (73)
+|++.+.+|...++++.+..|+.+.= .+.|++
T Consensus 2 ~vt~~~~~G~~~~~~~~~g~tll~a~----~~~gi~ 33 (104)
T 3lxf_A 2 AILVTTRDGTRTEIQAEPGLSLMEAL----RDAGID 33 (104)
T ss_dssp EEEEECTTSCEEEEECCTTSBHHHHH----HHTTCT
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHH----HHcCCC
Confidence 68888999999999999999998753 335665
No 183
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=78.27 E-value=3.4 Score=23.13 Aligned_cols=35 Identities=14% Similarity=0.155 Sum_probs=25.8
Q ss_pred CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCc
Q psy4181 1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWE 40 (73)
Q Consensus 1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~ 40 (73)
|.+|.++..+| ..++++++..|+.+.=. +.|+++.
T Consensus 1 ~~~v~~~~~~g-~~~~~~~~g~tlL~a~~----~~gi~i~ 35 (95)
T 1frr_A 1 AYKTVLKTPSG-EFTLDVPEGTTILDAAE----EAGYDLP 35 (95)
T ss_dssp CEEEEEEETTE-EEEEEECTTCCHHHHHH----HTTCCCC
T ss_pred CeEEEEEeCCC-cEEEEeCCCCcHHHHHH----HcCCCCC
Confidence 56788887788 77889999999987532 3466543
No 184
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=77.60 E-value=2.5 Score=23.98 Aligned_cols=36 Identities=11% Similarity=-0.072 Sum_probs=30.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCC-----CccEEEEEcc
Q psy4181 13 KVRVKCNPDDTIGDLKKLIAAQTGTR-----WEKIVLKKWY 48 (73)
Q Consensus 13 ~~~v~v~~~~TV~~lK~~I~~~~gip-----~~~QrLif~G 48 (73)
.+++-|.++.+..+|..+|.++.+.+ .+.-+|-|..
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkD 43 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQD 43 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEc
Confidence 57889999999999999999999976 4556777744
No 185
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=76.57 E-value=7.9 Score=21.69 Aligned_cols=60 Identities=22% Similarity=0.237 Sum_probs=39.8
Q ss_pred EEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181 3 EITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY 71 (73)
Q Consensus 3 ~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~ 71 (73)
+|+|.++.|..+.+ ....|+.++=..|....|-.. ---..+|+...= ++-+++|++|.+.
T Consensus 7 ~i~v~tP~G~~~~l--p~GaT~~D~A~~Ih~~lg~~~--v~AkVNG~~v~L-----~~~L~~gd~VeIi 66 (78)
T 3hvz_A 7 EVFVFTPKGDVISL--PIGSTVIDFAYAIHSAVGNRM--IGAKVDGRIVPI-----DYKVKTGEIIDVL 66 (78)
T ss_dssp EEEEECTTSCEEEE--ETTCBHHHHHHHHCHHHHHTE--EEEEETTEEECT-----TCBCCTTCBEEEE
T ss_pred eEEEECCCCCEEEe--cCCCCHHHHHHHhhhhhhcce--EEEEECCEEcCC-----CcccCCCCEEEEE
Confidence 68999999988765 577899998777654433111 222447766542 3567899888765
No 186
>3ah7_A [2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur cluster biosynthes pseudomonas, metal binding protein; 1.90A {Pseudomonas putida}
Probab=74.60 E-value=2.9 Score=24.35 Aligned_cols=35 Identities=17% Similarity=0.146 Sum_probs=26.1
Q ss_pred CEEEEEEcCCC---CEEEEEeCCCCcHHHHHHHHHHHhCCCC
Q psy4181 1 MIEITCNDRLG---KKVRVKCNPDDTIGDLKKLIAAQTGTRW 39 (73)
Q Consensus 1 ~~~i~vk~~~G---~~~~v~v~~~~TV~~lK~~I~~~~gip~ 39 (73)
|.+|.+...+| ...++++.+..|+.+.= .+.|++.
T Consensus 1 M~~vt~~~~~g~~~~~~~v~~~~g~tlL~aa----~~~Gi~i 38 (113)
T 3ah7_A 1 MPLVTFLPHEKFCPEGLTVEVKPGTNILELA----HDHHIEM 38 (113)
T ss_dssp CCEEEECCBTTTBTTCEEEECCTTCBHHHHH----HHTTCCC
T ss_pred CCEEEEEcCCCcCCCCeEEEECCCCcHHHHH----HHcCCCC
Confidence 78899988776 66788999999998652 3355553
No 187
>1wri_A Ferredoxin II, ferredoxin; electron transport; 1.20A {Equisetum arvense} SCOP: d.15.4.1
Probab=71.15 E-value=6.6 Score=22.00 Aligned_cols=28 Identities=14% Similarity=0.315 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCEEEEEeCCCCcHHHHHH
Q psy4181 1 MIEITCNDRLGKKVRVKCNPDDTIGDLKK 29 (73)
Q Consensus 1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~ 29 (73)
|.+|.++...| ..++++++..|+.+.=.
T Consensus 1 ~~~V~~~~~~~-~~~~~~~~g~tlL~a~~ 28 (93)
T 1wri_A 1 AYKVTLKTPDG-DITFDVEPGERLIDIGS 28 (93)
T ss_dssp CEEEEEEETTE-EEEEEECTTSCHHHHHH
T ss_pred CEEEEEEECCC-eEEEEECCCCcHHHHHH
Confidence 56788876666 77899999999987643
No 188
>1i7h_A Ferredoxin; 2Fe-2S,electron transport; 1.70A {Escherichia coli} SCOP: d.15.4.1
Probab=70.98 E-value=3.7 Score=23.85 Aligned_cols=27 Identities=22% Similarity=0.185 Sum_probs=21.0
Q ss_pred CEEEEEEcCCC---CEEEEEeCCCCcHHHH
Q psy4181 1 MIEITCNDRLG---KKVRVKCNPDDTIGDL 27 (73)
Q Consensus 1 ~~~i~vk~~~G---~~~~v~v~~~~TV~~l 27 (73)
|.+|.+...+| ...++++.+..|+.+.
T Consensus 1 M~~i~~~~~~g~~~~~~~~~~~~g~tlL~a 30 (111)
T 1i7h_A 1 MPKIVILPHQDLCPDGAVLEANSGETILDA 30 (111)
T ss_dssp -CEEEECCBTTTBTTCEEEECCTTCBHHHH
T ss_pred CCEEEEEeCCCcCCCCeEEEeCCCCcHHHH
Confidence 77888887655 6677899999999875
No 189
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=70.86 E-value=7.3 Score=27.27 Aligned_cols=54 Identities=4% Similarity=-0.012 Sum_probs=38.2
Q ss_pred EEcCCCC----EEEEEeCCCCcHHHHHHHHHHHhCCCCcc-EEEEE--c--c--eEecCCccccc
Q psy4181 6 CNDRLGK----KVRVKCNPDDTIGDLKKLIAAQTGTRWEK-IVLKK--W--Y--TIFKDHIRIMD 59 (73)
Q Consensus 6 vk~~~G~----~~~v~v~~~~TV~~lK~~I~~~~gip~~~-QrLif--~--G--k~L~D~~tL~~ 59 (73)
|--++|. ..++.++++.|+++|=.+|+.+.|+..-+ --|.+ . | ..|..+.+|.+
T Consensus 12 V~l~~g~~~~~~~~~~~~~~tt~~dl~~~v~~~lgL~~~~~FgL~~~~~~~~~~~wL~~~~~l~~ 76 (375)
T 2al6_A 12 YFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLDMGVSN 76 (375)
T ss_dssp CCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCSCGGGEEEEEEETTSSCEEEECTTSBHHH
T ss_pred EEecCCCCCCceEEEEeCCCCCHHHHHHHHHHHcCCCeEeEEEEEEEEcCCCceEeeCCccchhh
Confidence 4445666 99999999999999999999999994221 23433 2 1 25666666653
No 190
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}
Probab=70.66 E-value=8.7 Score=27.43 Aligned_cols=51 Identities=16% Similarity=0.130 Sum_probs=38.0
Q ss_pred CCCCEEEEEeCCCCcHHHHHHHHH--HHhCCC---CccEEEEEc------ceEecCCccccc
Q psy4181 9 RLGKKVRVKCNPDDTIGDLKKLIA--AQTGTR---WEKIVLKKW------YTIFKDHIRIMD 59 (73)
Q Consensus 9 ~~G~~~~v~v~~~~TV~~lK~~I~--~~~gip---~~~QrLif~------Gk~L~D~~tL~~ 59 (73)
++|....+.++++.||+++=..|. .+.|+. ++---|.+. .+.|..+.+|.+
T Consensus 35 ~~~~~k~v~~d~~ttV~dVi~~i~~~~kiG~~i~~~~~FgL~~~~~~~~~~~wL~~~~~l~~ 96 (392)
T 4eku_A 35 PGKNFKLVKCTVQTEIREIITSILLSGRIGPNIRLAECYGLRLKHMKSDEIHWLHPQMTVGE 96 (392)
T ss_dssp GGGEEEEEEEETTCBHHHHHHHHHHTTTTCSSCCCGGGEEEEEEESSSCCEEEECTTSBHHH
T ss_pred CCCCeEEEEeCCCCcHHHHHHHHHHHhhcCCCcCccceEEEEEEECCCCceEECCCCCcHHH
Confidence 788899999999999999999999 577863 334444331 256777777765
No 191
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=70.65 E-value=13 Score=21.61 Aligned_cols=48 Identities=8% Similarity=-0.085 Sum_probs=37.9
Q ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEE--cc-eEecCCcc
Q psy4181 9 RLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKK--WY-TIFKDHIR 56 (73)
Q Consensus 9 ~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif--~G-k~L~D~~t 56 (73)
+++....|+|.|..|+.+--.|+..+-|+.|+...... .| +..-|++|
T Consensus 15 Pn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy~~~~~~~~~IdWdt 65 (86)
T 1wxm_A 15 PNKQRTVVTVRDGMSVYDSLDKALKVRGLNQDCCVVYRLIKGRKTVTAWDT 65 (86)
T ss_dssp SSSCEEEEECCSSCBSHHHHHHHHHTTTCCSSSEEEEEESSSCEEEECSSS
T ss_pred CCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEEEcCCCCccccchhH
Confidence 78888889999999999999999999999997765542 35 34445544
No 192
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=70.23 E-value=16 Score=22.46 Aligned_cols=59 Identities=12% Similarity=0.048 Sum_probs=46.4
Q ss_pred CEEEEEeCCCCcHHHHHHHHHH--------HhCCCCccEEEEEcceEec--CCccccccCCCCCCEEEE
Q psy4181 12 KKVRVKCNPDDTIGDLKKLIAA--------QTGTRWEKIVLKKWYTIFK--DHIRIMDYEIHDGMNLEL 70 (73)
Q Consensus 12 ~~~~v~v~~~~TV~~lK~~I~~--------~~gip~~~QrLif~Gk~L~--D~~tL~~y~I~~g~ti~L 70 (73)
..+++.+.|+.+-++|-+++-. -..|++.+=.+.-+|+++. ...||++.|+.--|.|.+
T Consensus 38 ap~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~lrf 106 (119)
T 3u52_E 38 APFALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSMLTV 106 (119)
T ss_dssp SCEEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEEEE
T ss_pred CceeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheEEE
Confidence 3467889999999998775543 2456666667888999995 478999999998888875
No 193
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=69.22 E-value=23 Score=26.99 Aligned_cols=59 Identities=8% Similarity=0.158 Sum_probs=40.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhC--CCCc--------cEEEEEcce--Ee----cC--CccccccCCCCCCEEEEE
Q psy4181 13 KVRVKCNPDDTIGDLKKLIAAQTG--TRWE--------KIVLKKWYT--IF----KD--HIRIMDYEIHDGMNLELY 71 (73)
Q Consensus 13 ~~~v~v~~~~TV~~lK~~I~~~~g--ip~~--------~QrLif~Gk--~L----~D--~~tL~~y~I~~g~ti~L~ 71 (73)
...+.++++.|..++-+.+..+.. +... ..+++|... .| ++ ..+|.+.|+.+|+.|.+.
T Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~ 789 (805)
T 2nvu_B 713 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 789 (805)
T ss_dssp CEEEEECTTSBHHHHHHHHHHCTTTCCSSCEEEEEETTEEEEEECCSSHHHHHHHGGGGGSBTTTTTCCTTCEEEEE
T ss_pred eEEEEECCcChHHHHHHHHHhhhccCcccceEEEEccCCCcEEEecCccchhhhhHhhhcCCHHHcCCCCCCEEEEE
Confidence 466788888999999999988744 3221 145666432 11 12 678999999999988763
No 194
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=69.15 E-value=16 Score=21.97 Aligned_cols=30 Identities=20% Similarity=0.293 Sum_probs=25.7
Q ss_pred EEEcCCCCEEEEEeCCCCcHHHHHHHHHHH
Q psy4181 5 TCNDRLGKKVRVKCNPDDTIGDLKKLIAAQ 34 (73)
Q Consensus 5 ~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~ 34 (73)
.+=-++|-.+.++|..+.|+.++|+.+-++
T Consensus 23 ~~LlPnGi~i~l~~~~~~tl~eiK~~lw~e 52 (108)
T 2v1y_A 23 ECLLPNGMIVTLECLREATLITIKHELFKE 52 (108)
T ss_dssp EEECTTSCEEEEEEETTCBHHHHHHHHHHH
T ss_pred EEEcCcEEEEEEEeeccccHHHHHHHHHHH
Confidence 333469999999999999999999988776
No 195
>3n9z_C Adrenodoxin; cytochrome P450, 22-hydroxycholesterol, cholesterol SIDE CHA cleavage, structural genomics; HET: HEM HC9; 2.17A {Homo sapiens} SCOP: d.15.4.1 PDB: 3na1_C* 3p1m_A* 1l6u_A 1l6v_A 1e6e_B* 1cje_A
Probab=69.13 E-value=0.98 Score=27.46 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=0.0
Q ss_pred CEEEEEEcCCCCEEEEEeCCCCcHHHH
Q psy4181 1 MIEITCNDRLGKKVRVKCNPDDTIGDL 27 (73)
Q Consensus 1 ~~~i~vk~~~G~~~~v~v~~~~TV~~l 27 (73)
|++|++.+++|+..++++.+..|+.+.
T Consensus 5 ~v~Vtf~~~~G~~~~v~~~~G~tLl~a 31 (123)
T 3n9z_C 5 KITVHFINRDGETLTTKGKVGDSLLDV 31 (123)
T ss_dssp ---------------------------
T ss_pred cEEEEEEeCCCCEEEEEECCCCcHHHH
Confidence 788988888999999999999998874
No 196
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=67.79 E-value=9.8 Score=21.69 Aligned_cols=25 Identities=4% Similarity=0.076 Sum_probs=21.4
Q ss_pred EEEEEcCCCCEEEEEeCCCCcHHHH
Q psy4181 3 EITCNDRLGKKVRVKCNPDDTIGDL 27 (73)
Q Consensus 3 ~i~vk~~~G~~~~v~v~~~~TV~~l 27 (73)
+|.+...+|...++++.+..|+.+.
T Consensus 2 ~V~~~~~~g~~~~~~~~~g~tlLea 26 (106)
T 1xlq_A 2 KVVYVSHDGTRRELDVADGVSLMQA 26 (106)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHH
Confidence 5777778998899999999999875
No 197
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=66.06 E-value=12 Score=21.37 Aligned_cols=32 Identities=19% Similarity=0.297 Sum_probs=24.6
Q ss_pred EEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCC
Q psy4181 3 EITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTR 38 (73)
Q Consensus 3 ~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip 38 (73)
+|.+...+|...++++.+..|+.+.= .+.|++
T Consensus 2 ~v~~~~~~g~~~~~~~~~g~tlL~aa----~~~gi~ 33 (106)
T 1uwm_A 2 KIIFIEHNGTRHEVEAKPGLTVMEAA----RDNGVP 33 (106)
T ss_dssp EEEEECTTCCEEEEECCTTSBHHHHH----HTTTCT
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHH----HHcCCC
Confidence 57787789988999999999998752 335555
No 198
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=64.91 E-value=19 Score=21.30 Aligned_cols=48 Identities=13% Similarity=-0.167 Sum_probs=37.6
Q ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEE--cc-eEecCCcc
Q psy4181 9 RLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKK--WY-TIFKDHIR 56 (73)
Q Consensus 9 ~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif--~G-k~L~D~~t 56 (73)
+++.-..|+|.|..|+.+--.|+-++-|+.++.....- .| +..-|++|
T Consensus 25 PNqQrT~V~VrpG~tlrdAL~KaLk~R~L~pe~C~Vy~~~~~~~~~IdWdt 75 (95)
T 2l05_A 25 PNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVYRIQDGEKKPIGWDT 75 (95)
T ss_dssp TTTEEEEEECCTTCBHHHHHHHHHHHHTCCGGGEEEEEEETTEEEEECTTS
T ss_pred CCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHcEEEEcCCCCccccchhH
Confidence 67878889999999999999999999999997765542 24 34445544
No 199
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=64.84 E-value=5.9 Score=25.00 Aligned_cols=21 Identities=10% Similarity=-0.053 Sum_probs=18.4
Q ss_pred CCCEEEEEeCCCCcHHHHHHH
Q psy4181 10 LGKKVRVKCNPDDTIGDLKKL 30 (73)
Q Consensus 10 ~G~~~~v~v~~~~TV~~lK~~ 30 (73)
+|+.+.++++|..|+.++=..
T Consensus 10 NG~~~~v~~~~~~tLL~~Lr~ 30 (161)
T 1rm6_C 10 NGRAREDLVPDNMLLLDYLRE 30 (161)
T ss_dssp TTEEEEEEEETTCBHHHHHHH
T ss_pred CCEEEEEecCCcCcHHHHHHH
Confidence 899999999999999987544
No 200
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=64.71 E-value=12 Score=25.24 Aligned_cols=28 Identities=11% Similarity=0.029 Sum_probs=24.1
Q ss_pred CEEEEEEcCCCCEEEEEeCCCCcHHHHH
Q psy4181 1 MIEITCNDRLGKKVRVKCNPDDTIGDLK 28 (73)
Q Consensus 1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK 28 (73)
|.+|.+.+.+|...++++.+..||.+.=
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~g~tll~a~ 30 (338)
T 1krh_A 3 NHQVALQFEDGVTRFICIAQGETLSDAA 30 (338)
T ss_dssp CEEEEEECTTSCEEEEEECTTCCHHHHH
T ss_pred ceEEEEEEcCCCcEEEEeCCCCcHHHHH
Confidence 5789998888889999999999998763
No 201
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=61.91 E-value=21 Score=20.74 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=34.2
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCCCCccE-EEEEcceE
Q psy4181 11 GKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKI-VLKKWYTI 50 (73)
Q Consensus 11 G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~Q-rLif~Gk~ 50 (73)
.++.++.|++.+|=-++|+-++..+|+.+..- .++..|+.
T Consensus 27 ~n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK~ 67 (93)
T 3r8s_T 27 SNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKV 67 (93)
T ss_dssp TSEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCCB
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCce
Confidence 46899999999999999999999999999887 45666653
No 202
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=61.78 E-value=15 Score=21.07 Aligned_cols=34 Identities=12% Similarity=0.220 Sum_probs=30.6
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEE
Q psy4181 11 GKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVL 44 (73)
Q Consensus 11 G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrL 44 (73)
.++.++.|++..|=-++|+-++..+|+.+..-+-
T Consensus 22 ~n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT 55 (85)
T 1vq8_S 22 QNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNT 55 (85)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCceEEEe
Confidence 4688999999999999999999999999987654
No 203
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=60.55 E-value=18 Score=21.89 Aligned_cols=43 Identities=12% Similarity=0.139 Sum_probs=33.4
Q ss_pred EEeCCCCcHHHHHHHHHHHhCCCCccEEEEE-cceEecCCcccc
Q psy4181 16 VKCNPDDTIGDLKKLIAAQTGTRWEKIVLKK-WYTIFKDHIRIM 58 (73)
Q Consensus 16 v~v~~~~TV~~lK~~I~~~~gip~~~QrLif-~Gk~L~D~~tL~ 58 (73)
+-|.++.||+++..-|..+.++++++--.+| ++....-+.+++
T Consensus 52 flVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~ 95 (119)
T 3h9d_A 52 FLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMA 95 (119)
T ss_dssp EEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBHH
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchHH
Confidence 4578899999999999999999998866666 665444455554
No 204
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=60.32 E-value=12 Score=25.51 Aligned_cols=35 Identities=11% Similarity=0.047 Sum_probs=28.8
Q ss_pred EEEEEEcCCCCEEEEEeCC--CCcHHHHHHHHHHHhCCCCc
Q psy4181 2 IEITCNDRLGKKVRVKCNP--DDTIGDLKKLIAAQTGTRWE 40 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~--~~TV~~lK~~I~~~~gip~~ 40 (73)
+.|-|-.++|....++|++ ++|+.+| .++.|++.+
T Consensus 6 ~~i~V~l~dg~~~~~~i~~~~~tt~~el----~e~lgL~~~ 42 (322)
T 4dxa_B 6 EKVRIYRMDGSYRSVELKHGNNTTVQQI----MEGMRLSQE 42 (322)
T ss_dssp CEEEEECTTSCEEEEECTTGGGCCHHHH----HTTSSCCTT
T ss_pred eEEEEEEECCcEEEEEEcCCCCCcHHHH----HHHhCcCcc
Confidence 3567777899999999999 9999999 355788764
No 205
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=59.97 E-value=20 Score=22.05 Aligned_cols=57 Identities=11% Similarity=0.003 Sum_probs=40.0
Q ss_pred EEEeCCCCcHHHHHHHHHHHhCCCCccEEEE-EcceEe-cCCccccc----cCCCCCCEEEEEe
Q psy4181 15 RVKCNPDDTIGDLKKLIAAQTGTRWEKIVLK-KWYTIF-KDHIRIMD----YEIHDGMNLELYY 72 (73)
Q Consensus 15 ~v~v~~~~TV~~lK~~I~~~~gip~~~QrLi-f~Gk~L-~D~~tL~~----y~I~~g~ti~L~~ 72 (73)
.+-|..+.||+++..-|..+.++++++--.+ |.+..+ .-+.++++ |+-. +.-+++.|
T Consensus 56 KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~lY~~~kde-DGfLyv~Y 118 (130)
T 2zjd_A 56 KFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDE-DGFLYMVY 118 (130)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHHHHHHHCCT-TSCEEEEE
T ss_pred EEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHHHHHHhCCC-CCEEEEEE
Confidence 3557789999999999999999999887766 866655 34555553 2223 33555555
No 206
>3kdv_A DDRB, DNA damage response B protein; anti-parallel beta-barrel, pentamer, DNA binding protein; HET: DNA; 2.80A {Deinococcus geothermalis} PDB: 4exw_A
Probab=59.61 E-value=17 Score=23.72 Aligned_cols=30 Identities=30% Similarity=0.460 Sum_probs=26.3
Q ss_pred CEEEEEEcCCCCEEEEEeCCCCcHHHHHHH
Q psy4181 1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKL 30 (73)
Q Consensus 1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~ 30 (73)
|++|-+-|..|.+++++|+...++.++-.+
T Consensus 7 ml~i~f~t~LG~~V~vdve~~~~~l~v~R~ 36 (184)
T 3kdv_A 7 MLHIEFITDLGAKVTVDVESADKLLDVQRQ 36 (184)
T ss_dssp CEEEEEECTTCCEEEEEESSGGGHHHHHHH
T ss_pred eEEEEEecCCCceEEEecCCHHHHHHHHHH
Confidence 899999999999999999888888887543
No 207
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=59.22 E-value=12 Score=23.79 Aligned_cols=27 Identities=15% Similarity=0.171 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHH
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKK 29 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~ 29 (73)
|.|.++ .+|+.++++++|+.|+.++=.
T Consensus 4 ~~i~~~-vNG~~~~~~v~~~~tLLd~LR 30 (166)
T 1n62_A 4 AHIELT-INGHPVEALVEPRTLLIHFIR 30 (166)
T ss_dssp EEEEEE-ETTEEEEEEECTTCBHHHHHH
T ss_pred ceEEEE-ECCEEEEEecCCCCcHHHHHH
Confidence 444443 389999999999999998643
No 208
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Probab=59.20 E-value=7.5 Score=21.44 Aligned_cols=41 Identities=17% Similarity=0.160 Sum_probs=30.7
Q ss_pred HHHhCCCCccEEEEEcceEecCCcccccc-CCCCCCEEEEEe
Q psy4181 32 AAQTGTRWEKIVLKKWYTIFKDHIRIMDY-EIHDGMNLELYY 72 (73)
Q Consensus 32 ~~~~gip~~~QrLif~Gk~L~D~~tL~~y-~I~~g~ti~L~~ 72 (73)
+++.|+.+....+-.+|+.+.+...++-. .++.|.++.|.+
T Consensus 42 A~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~g~~v~l~v 83 (93)
T 2dls_A 42 AMKAGVKEGDRIIKVNGTMVTNSSHLEVVKLIKSGAYVALTL 83 (93)
T ss_dssp TTTTTCCSSCEEEEETTEECSSSCHHHHHHHHTSSSEEEEEE
T ss_pred HHHcCCCCCCEEEEECCEECCCCCHHHHHHhhcCCCEEEEEE
Confidence 57789999999999999999875433222 256788888865
No 209
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=58.38 E-value=7.1 Score=19.78 Aligned_cols=16 Identities=25% Similarity=0.401 Sum_probs=12.6
Q ss_pred CCcHHHHHHHHHHHhC
Q psy4181 21 DDTIGDLKKLIAAQTG 36 (73)
Q Consensus 21 ~~TV~~lK~~I~~~~g 36 (73)
+.||.+||.-|++-+.
T Consensus 2 sntvkelknyiqelee 17 (46)
T 3he4_B 2 SNTVKELKNYIQELEE 17 (46)
T ss_dssp -CCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHH
Confidence 5799999999988653
No 210
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=57.90 E-value=13 Score=23.54 Aligned_cols=21 Identities=14% Similarity=0.151 Sum_probs=18.1
Q ss_pred CCCCEEEEEeCCCCcHHHHHH
Q psy4181 9 RLGKKVRVKCNPDDTIGDLKK 29 (73)
Q Consensus 9 ~~G~~~~v~v~~~~TV~~lK~ 29 (73)
.+|+.+.++++|+.|+.++=.
T Consensus 10 vNG~~~~~~v~~~~tLLd~LR 30 (163)
T 1ffv_A 10 VNGKAQEKAVEPRTLLIHFLR 30 (163)
T ss_dssp ETTEEEEEEECTTCBHHHHHH
T ss_pred ECCEEEEEecCCCCcHHHHHH
Confidence 389999999999999998643
No 211
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=57.84 E-value=15 Score=20.77 Aligned_cols=42 Identities=7% Similarity=-0.004 Sum_probs=31.8
Q ss_pred HHHHhCCCCccEEEEEcceEecCCcccccc--CCCCCCEEEEEe
Q psy4181 31 IAAQTGTRWEKIVLKKWYTIFKDHIRIMDY--EIHDGMNLELYY 72 (73)
Q Consensus 31 I~~~~gip~~~QrLif~Gk~L~D~~tL~~y--~I~~g~ti~L~~ 72 (73)
.+++.|+.+....+-.+|+.+.+...+..+ ...+|..+.|.+
T Consensus 49 ~A~~aGl~~GDvI~~ing~~v~~~~d~~~~~~~~~~g~~v~l~v 92 (105)
T 2i4s_A 49 LFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTV 92 (105)
T ss_dssp HHHHHTCCTTCEEEEETTEETTSTTHHHHHHHHHTTCSEEEEEE
T ss_pred HHHHcCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCeEEEEE
Confidence 556789999999999999999887765432 235677777654
No 212
>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A
Probab=57.18 E-value=15 Score=20.63 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=23.1
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCc
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWE 40 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~ 40 (73)
.+|.+...+| ..++++++..|+.+.=.. .|+++.
T Consensus 3 ~~v~~~~~~~-~~~~~~~~g~tlL~a~~~----~gi~i~ 36 (97)
T 1a70_A 3 YKVTLVTPTG-NVEFQCPDDVYILDAAEE----EGIDLP 36 (97)
T ss_dssp EEEEEEETTE-EEEEEEETTSCHHHHHHH----TTCCCC
T ss_pred EEEEEEeCCc-eEEEEeCCCCcHHHHHHH----cCCCcc
Confidence 4677765556 678899999999876332 466543
No 213
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=56.28 E-value=16 Score=23.13 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHH
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLK 28 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK 28 (73)
|.|.++ .+|+.++++++|+.|+.++=
T Consensus 4 ~~i~~~-vNG~~~~v~v~p~~tLLd~L 29 (160)
T 3hrd_D 4 ITINLN-LNGEARSIVTEPNKRLLDLL 29 (160)
T ss_dssp EEEEEE-ETTEEEEEEECSSSBHHHHH
T ss_pred ceEEEE-ECCEEEEEecCCCCCHHHHH
Confidence 445554 48999999999999999863
No 214
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=56.26 E-value=19 Score=20.73 Aligned_cols=56 Identities=13% Similarity=0.022 Sum_probs=39.9
Q ss_pred EEEeCCCCcHHHHHHHHHHHhCCCCccEEEEE-cceEe-cCCcccc----ccCCCCCCEEEEEe
Q psy4181 15 RVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKK-WYTIF-KDHIRIM----DYEIHDGMNLELYY 72 (73)
Q Consensus 15 ~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif-~Gk~L-~D~~tL~----~y~I~~g~ti~L~~ 72 (73)
.+-|.++.|++++..-|..+..+++++--.+| +...+ ..+.+++ .|+ ++.-+.+.|
T Consensus 23 KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k--~DGfLyv~Y 84 (91)
T 4gdk_A 23 KWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFG--SDGKLVLHY 84 (91)
T ss_dssp EEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHHHHHHHC--BTTEEEEEE
T ss_pred EEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHHHHHHhC--CCCEEEEEE
Confidence 46778999999999999999999998876667 44333 3345554 455 445566655
No 215
>1czp_A Ferredoxin I; [2Fe-2S] protein, crystal reduced with dithionite, electron; 1.17A {Nostoc SP} SCOP: d.15.4.1 PDB: 1ewy_C* 1fxa_A 1qt9_A 1qog_A 1j7c_A 1j7b_A 1qof_A 1qob_A 1j7a_A 1qoa_A 1rfk_A 3p63_A 4fxc_A 3ab5_A 1roe_A 2cjn_A 2cjo_A 1off_A 1dox_A 1doy_A ...
Probab=55.85 E-value=22 Score=19.85 Aligned_cols=35 Identities=17% Similarity=0.208 Sum_probs=23.9
Q ss_pred EEEEEEcCCCC-EEEEEeCCCCcHHHHHHHHHHHhCCCCc
Q psy4181 2 IEITCNDRLGK-KVRVKCNPDDTIGDLKKLIAAQTGTRWE 40 (73)
Q Consensus 2 ~~i~vk~~~G~-~~~v~v~~~~TV~~lK~~I~~~~gip~~ 40 (73)
.+|.+....|. ..++++.+..|+.+.=. +.|+++.
T Consensus 3 ~~V~~~~~~~~~~~~~~~~~g~tlL~a~~----~~gi~i~ 38 (98)
T 1czp_A 3 FKVTLINEAEGTKHEIEVPDDEYILDAAE----EQGYDLP 38 (98)
T ss_dssp EEEEEEETTTTEEEEEEEETTSCHHHHHH----HTTCCCC
T ss_pred eEEEEEeCCCCCcEEEEeCCCCCHHHHHH----HcCCCcc
Confidence 56777665554 67788999999987533 3566543
No 216
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=55.70 E-value=28 Score=20.17 Aligned_cols=39 Identities=15% Similarity=0.133 Sum_probs=33.4
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCCCCccE-EEEEcce
Q psy4181 11 GKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKI-VLKKWYT 49 (73)
Q Consensus 11 G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~Q-rLif~Gk 49 (73)
.++.++.|++.+|=-++|+-++..+|+.+..- .++..|+
T Consensus 21 ~n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~VnT~~~~gK 60 (92)
T 3tve_T 21 EGKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGK 60 (92)
T ss_dssp TTEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEECCC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceeeeeeeeeCCc
Confidence 37899999999999999999999999999876 4455654
No 217
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=55.68 E-value=23 Score=21.12 Aligned_cols=62 Identities=13% Similarity=0.095 Sum_probs=42.7
Q ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEE---EcceE--ecCCccccccCCCCCCEEEEE
Q psy4181 10 LGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLK---KWYTI--FKDHIRIMDYEIHDGMNLELY 71 (73)
Q Consensus 10 ~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLi---f~Gk~--L~D~~tL~~y~I~~g~ti~L~ 71 (73)
+..-+++.+..+.|+.+++..++++.+..-+.+.|. ++|.. |++++.--.-.+.-..-|++.
T Consensus 18 Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc 84 (104)
T 1wgy_A 18 EHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVY 84 (104)
T ss_dssp SSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEE
T ss_pred cCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEe
Confidence 566788889999999999999999999888788884 46653 455443333333333444443
No 218
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=55.25 E-value=13 Score=20.69 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=19.6
Q ss_pred EEEEEcCCCCEEEEEeCCCCcHHHHH
Q psy4181 3 EITCNDRLGKKVRVKCNPDDTIGDLK 28 (73)
Q Consensus 3 ~i~vk~~~G~~~~v~v~~~~TV~~lK 28 (73)
+|.++..+| ..++++++..|+.+.=
T Consensus 2 ~v~~~~~~g-~~~~~~~~g~tlL~a~ 26 (94)
T 1awd_A 2 KVTLKTPSG-EETIECPEDTYILDAA 26 (94)
T ss_dssp EEEEEETTE-EEEEECCTTSCHHHHH
T ss_pred EEEEEeCCC-cEEEEECCCCcHHHHH
Confidence 577776666 6788999999998763
No 219
>4dxe_H ACP, acyl carrier protein; acyl-carrier-protein synthase, type II acid synthesis pathway; 2.51A {Staphylococcus aureus}
Probab=55.10 E-value=11 Score=21.71 Aligned_cols=38 Identities=16% Similarity=0.281 Sum_probs=26.3
Q ss_pred EEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccc-cccCC
Q psy4181 16 VKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRI-MDYEI 62 (73)
Q Consensus 16 v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL-~~y~I 62 (73)
+...+.+....|++.|++..|++++. +.++.+| +++|+
T Consensus 20 ~~m~~mei~~~l~~iiae~l~~~~~~---------I~~d~~l~~dLGl 58 (101)
T 4dxe_H 20 FQSNAMENFDKVKDIIVDRLGVDADK---------VTEDASFKDDLGA 58 (101)
T ss_dssp ----CTTHHHHHHHHHHHTTCCCGGG---------CCTTCBTTTTSCC
T ss_pred HhcCHHHHHHHHHHHHHHHHCcChhh---------CCCCCcchhhcCC
Confidence 45566778899999999999998864 3555666 66665
No 220
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=53.22 E-value=8.5 Score=21.84 Aligned_cols=33 Identities=21% Similarity=0.258 Sum_probs=23.8
Q ss_pred CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHH
Q psy4181 1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAA 33 (73)
Q Consensus 1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~ 33 (73)
||-|.+++.+|..+.++-.....-.-+|.++..
T Consensus 1 ~~~v~L~SsDg~~F~v~r~vA~~S~~ik~m~~~ 33 (97)
T 4ajy_C 1 MMYVKLISSDGHEFIVKREHALTSGTIKAMLSG 33 (97)
T ss_dssp -CEEEEECTTCCEEEEEHHHHTTSHHHHHHHCC
T ss_pred CeEEEEEecCCcEEEecHHHHHHhHHHHHHHHh
Confidence 788999999999999975443344566777754
No 221
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=52.26 E-value=30 Score=20.84 Aligned_cols=43 Identities=16% Similarity=0.008 Sum_probs=32.3
Q ss_pred EEeCCCCcHHHHHHHHHHHhCCCCccEEEEE-cceEecCCcccc
Q psy4181 16 VKCNPDDTIGDLKKLIAAQTGTRWEKIVLKK-WYTIFKDHIRIM 58 (73)
Q Consensus 16 v~v~~~~TV~~lK~~I~~~~gip~~~QrLif-~Gk~L~D~~tL~ 58 (73)
+-|.++.||+++..-|..+..+++++--.+| ++....-+.+++
T Consensus 51 flVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~ 94 (118)
T 3rui_B 51 YLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMS 94 (118)
T ss_dssp EEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTBCCCTTSBHH
T ss_pred EEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECCccCCccchHH
Confidence 5578999999999999999999998876677 443233344554
No 222
>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=52.18 E-value=26 Score=18.76 Aligned_cols=36 Identities=11% Similarity=-0.001 Sum_probs=24.8
Q ss_pred EEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCcc
Q psy4181 6 CNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIR 56 (73)
Q Consensus 6 vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~t 56 (73)
|+..-|..+.|.|..+ | |+-.-.|.++|+.|.....
T Consensus 6 v~~~~G~~v~l~C~vs--------------~-p~p~v~W~k~g~~l~~~~~ 41 (84)
T 2lu7_A 6 VRSTPGGDLELVVHLS--------------G-PGGPVRWYKDGERLASQGR 41 (84)
T ss_dssp EEECTTSCEEEECCCS--------------C-CSTTCEEEETTEECCCCSS
T ss_pred EEEecCCCEEEEEEEC--------------C-CCcEEEEEECCEEcccccc
Confidence 3445688888887532 5 4446789999999976543
No 223
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=51.95 E-value=24 Score=20.53 Aligned_cols=36 Identities=19% Similarity=0.110 Sum_probs=31.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCCccEE-EEEcc
Q psy4181 13 KVRVKCNPDDTIGDLKKLIAAQTGTRWEKIV-LKKWY 48 (73)
Q Consensus 13 ~~~v~v~~~~TV~~lK~~I~~~~gip~~~Qr-Lif~G 48 (73)
..++.|++..|=-++|+-++..+|+.+..-+ ++..|
T Consensus 24 ~y~F~V~~~anK~eIK~aVE~lf~VkV~~VNT~~~~g 60 (95)
T 2zjr_Q 24 VYSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPG 60 (95)
T ss_dssp CCEEEECSSCTHHHHHHHHHHHHCCCCSEEEECCBCC
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCCceEEEeEEeCC
Confidence 3889999999999999999999999998874 35555
No 224
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*
Probab=51.52 E-value=18 Score=19.48 Aligned_cols=42 Identities=12% Similarity=-0.162 Sum_probs=29.9
Q ss_pred HHHHhCCCCccEEEEEcceEecCCc--cccccCCCCCCEEEEEe
Q psy4181 31 IAAQTGTRWEKIVLKKWYTIFKDHI--RIMDYEIHDGMNLELYY 72 (73)
Q Consensus 31 I~~~~gip~~~QrLif~Gk~L~D~~--tL~~y~I~~g~ti~L~~ 72 (73)
-+++.|+.+....+-.+|+.+.+.. .+..+=-..|.++.|.+
T Consensus 39 pA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v 82 (91)
T 2pkt_A 39 KAALANLCIGDVITAIDGENTSNMTHLEAQNRIKGCTDNLTLTV 82 (91)
T ss_dssp HHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEE
T ss_pred HHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEE
Confidence 4677899999999999999998766 33222112677777754
No 225
>2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine biosynthesis, dopamine, hydroxybenzaldehyde; HET: MSE LDP HBA; 2.09A {Thalictrum flavum} PDB: 2vne_A*
Probab=51.03 E-value=5.2 Score=26.27 Aligned_cols=18 Identities=22% Similarity=-0.042 Sum_probs=9.9
Q ss_pred ccEEEEEcceEecCCccc
Q psy4181 40 EKIVLKKWYTIFKDHIRI 57 (73)
Q Consensus 40 ~~QrLif~Gk~L~D~~tL 57 (73)
..|||++.|+++-..+||
T Consensus 3 ~~~~~~~~~~~~~~~~~~ 20 (201)
T 2vq5_A 3 GSQKLILTGRPFLHHQGI 20 (201)
T ss_dssp -CCEEEECCC------CT
T ss_pred ccceeeecCCCCCChhhh
Confidence 469999999999777766
No 226
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=50.99 E-value=24 Score=21.62 Aligned_cols=43 Identities=16% Similarity=0.079 Sum_probs=32.6
Q ss_pred EEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEe-cCCcccc
Q psy4181 16 VKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIF-KDHIRIM 58 (73)
Q Consensus 16 v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L-~D~~tL~ 58 (73)
+-|.++.||+++..-|..+..+++++--.+|-+..+ .-+.|++
T Consensus 57 flVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn~lPs~s~~m~ 100 (125)
T 3m95_A 57 YLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMG 100 (125)
T ss_dssp EEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHH
T ss_pred EEcCCCCEeeeehhhhHhhcCCCccccEEEEECCccCCccchHH
Confidence 457789999999999999999999887667743334 3445554
No 227
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=50.97 E-value=29 Score=19.92 Aligned_cols=34 Identities=18% Similarity=0.208 Sum_probs=30.6
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEE
Q psy4181 11 GKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVL 44 (73)
Q Consensus 11 G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrL 44 (73)
.++.++.|++..|=-++|+-++..+|+.+..-+-
T Consensus 23 ~n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNT 56 (86)
T 3j21_T 23 ENKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNT 56 (86)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEE
Confidence 4788999999999999999999999999987654
No 228
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=50.63 E-value=44 Score=21.02 Aligned_cols=55 Identities=11% Similarity=0.115 Sum_probs=35.3
Q ss_pred EEEeCCCCcHHHHHHHHHHHhC-CC---------CccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181 15 RVKCNPDDTIGDLKKLIAAQTG-TR---------WEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY 71 (73)
Q Consensus 15 ~v~v~~~~TV~~lK~~I~~~~g-ip---------~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~ 71 (73)
.++++. .||.+|.+.+..+.. +. ...-...-+|+...... -.++-+++|+.|.++
T Consensus 17 ~~ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~~v~~~~-~~dt~L~dGDeVai~ 81 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYLQ-GLSTPLSPGATLDLF 81 (168)
T ss_dssp EEECCC-SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTEEGGGTT-GGGCBCCTTCEEEEE
T ss_pred eEEECC-CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCEECCCcC-CCccCCCCCCEEEEE
Confidence 456665 899999999987731 10 12234555887765422 124569999999875
No 229
>4eiv_A Deoxyribose-phosphate aldolase; chemotherapy, brain cysts, bradyzoite, structural genomics, for structural genomics of infectious diseases; 1.37A {Toxoplasma gondii} PDB: 3qyq_A*
Probab=50.37 E-value=16 Score=25.71 Aligned_cols=25 Identities=12% Similarity=-0.009 Sum_probs=20.3
Q ss_pred EEEcCCCCEEEEEeCCCCcHHHHHHHHHHH
Q psy4181 5 TCNDRLGKKVRVKCNPDDTIGDLKKLIAAQ 34 (73)
Q Consensus 5 ~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~ 34 (73)
||||+||.. ....|+.+++-+.+..
T Consensus 182 FVKTSTGf~-----~~gAT~edV~lM~~~v 206 (297)
T 4eiv_A 182 FLQTSSGLG-----ATHATMFTVHLISIAL 206 (297)
T ss_dssp EEECCCSSS-----SCCCCHHHHHHHHHHH
T ss_pred EEEcCCCCC-----CCCCCHHHHHHHHHHH
Confidence 899999983 4688999998876654
No 230
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=49.35 E-value=21 Score=19.34 Aligned_cols=58 Identities=9% Similarity=0.057 Sum_probs=37.8
Q ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCcccccc--CCCCCCEEEEEe
Q psy4181 10 LGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDY--EIHDGMNLELYY 72 (73)
Q Consensus 10 ~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y--~I~~g~ti~L~~ 72 (73)
+|...-+.|.+... +..+++.|+.+....+-.+|+.+.+...+..+ ..++|..+.|.+
T Consensus 15 ~g~~~G~~V~~~~~-----~s~A~~aGl~~GD~I~~ing~~v~~~~d~~~~~~~~~~g~~v~l~v 74 (87)
T 2i6v_A 15 DDKVLGYRVSPGKD-----PVLFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTV 74 (87)
T ss_dssp TTEEEEEEEEECSC-----HHHHHHTTCCTTCEEEEETTEETTCHHHHHHHHHTGGGCSEEEEEE
T ss_pred CCeEEEEEEEeCCC-----CCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEE
Confidence 45544444444322 33567789999999999999999876554321 235677776654
No 231
>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1
Probab=49.23 E-value=10 Score=21.61 Aligned_cols=32 Identities=13% Similarity=0.231 Sum_probs=23.9
Q ss_pred EEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCC
Q psy4181 3 EITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTR 38 (73)
Q Consensus 3 ~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip 38 (73)
+|.+...+|+..++++.+..|+.+.= .+.|++
T Consensus 2 ~V~~~~~~g~~~~~~~~~g~tlL~aa----~~~gi~ 33 (105)
T 1b9r_A 2 RVVFIDEQSGEYAVDAQDGQSLMEVA----TQNGVP 33 (105)
T ss_dssp EEEECCTTTSCEEEECCTTCCTTHHH----HHHTCC
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHH----HHcCCC
Confidence 56776778988899999999998753 335555
No 232
>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae}
Probab=47.87 E-value=14 Score=22.62 Aligned_cols=31 Identities=13% Similarity=0.034 Sum_probs=26.0
Q ss_pred CCCCccEEEEEcceEecCCccccccCCCCCC
Q psy4181 36 GTRWEKIVLKKWYTIFKDHIRIMDYEIHDGM 66 (73)
Q Consensus 36 gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ 66 (73)
-.+|=--||.|.|+..+|+..=++|.+.+|+
T Consensus 57 ~~~PYyLRL~lP~~vved~~~~A~YD~d~g~ 87 (115)
T 3eud_A 57 HLSPYYLRLRFPHELIDDERSTAQYDSKDEC 87 (115)
T ss_dssp EETTEEEEEECSSCEECSTTCEEEEETTTTE
T ss_pred ecCCeEEEEecCcceecCCCcceEEeCCCcE
Confidence 3456667999999999999988899998876
No 233
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=47.83 E-value=35 Score=20.74 Aligned_cols=47 Identities=15% Similarity=-0.047 Sum_probs=30.8
Q ss_pred CEEEEEEcCC-------CCEEEEEeCC-----------CCcHHHHHHHHHHHh-CCCCccEEEEEc
Q psy4181 1 MIEITCNDRL-------GKKVRVKCNP-----------DDTIGDLKKLIAAQT-GTRWEKIVLKKW 47 (73)
Q Consensus 1 ~~~i~vk~~~-------G~~~~v~v~~-----------~~TV~~lK~~I~~~~-gip~~~QrLif~ 47 (73)
||.+.||..- +....+.++. ..|...|++++++.. ++....-.|.|.
T Consensus 18 ~~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~~~~f~l~Yk 83 (117)
T 2ktr_A 18 MGSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALRPGGFQAHYR 83 (117)
T ss_dssp --CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSSCEEEEEE
T ss_pred cccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccccCCCcEEEEEE
Confidence 6777888765 2444555542 249999999999998 666656666553
No 234
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=47.47 E-value=31 Score=19.52 Aligned_cols=42 Identities=12% Similarity=0.018 Sum_probs=31.7
Q ss_pred HHHHhCCCCccEEEEEcceEecCCccccccC--CCCCCEEEEEe
Q psy4181 31 IAAQTGTRWEKIVLKKWYTIFKDHIRIMDYE--IHDGMNLELYY 72 (73)
Q Consensus 31 I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~--I~~g~ti~L~~ 72 (73)
-+++.|+.+..+.+-.+|+.+.+...++.+- -..|.++.|.+
T Consensus 54 pA~~aGL~~GD~Il~vng~~v~~~~~~~~~~~~~~~g~~v~l~v 97 (117)
T 1uit_A 54 IAHQAGLEYGDQLLEFNGINLRSATEQQARLIIGQQCDTITILA 97 (117)
T ss_dssp HHHHHTCCTTCEECEETTEETTTCCHHHHHHHTTSCCSEEEEEE
T ss_pred HHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEE
Confidence 4566799999999999999998765554432 25688887765
No 235
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=47.16 E-value=25 Score=22.00 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=20.0
Q ss_pred EEEEEcCCCCEEEEEeCCCCcHHHHHH
Q psy4181 3 EITCNDRLGKKVRVKCNPDDTIGDLKK 29 (73)
Q Consensus 3 ~i~vk~~~G~~~~v~v~~~~TV~~lK~ 29 (73)
.|.+. .+|+.+.++++|..|+.++=.
T Consensus 11 ~i~~~-ing~~~~~~v~~~~tlL~~Lr 36 (168)
T 1t3q_A 11 RISAT-INGKPRVFYVEPRMHLADALR 36 (168)
T ss_dssp EEEEE-ETTEEEEEEECTTSBHHHHHH
T ss_pred eEEEE-ECCEEEEEecCCCCcHHHHHH
Confidence 34443 389999999999999998644
No 236
>3cjl_A Domain of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Pectobacterium atrosepticum SCRI1043}
Probab=47.13 E-value=22 Score=20.66 Aligned_cols=39 Identities=13% Similarity=0.205 Sum_probs=31.7
Q ss_pred EEEEEcCCC--CEEEEEeCCCCcHHHHHHHHHHHhCCCCcc
Q psy4181 3 EITCNDRLG--KKVRVKCNPDDTIGDLKKLIAAQTGTRWEK 41 (73)
Q Consensus 3 ~i~vk~~~G--~~~~v~v~~~~TV~~lK~~I~~~~gip~~~ 41 (73)
+|.|..++. +++.+++...|-+..+=+++....|.++++
T Consensus 7 rITve~l~~~~~~l~Fe~~nhDDi~~Ive~~~~~~~~~~~~ 47 (88)
T 3cjl_A 7 QITVEEKAEHQRTLSFEFSLHDDLFKLLEKVDGKMDMTPEQ 47 (88)
T ss_dssp EEEEEESSTTCCEEEEEEEESSCHHHHHHHHTTTSSSCHHH
T ss_pred EEEEEEccCCCCCeEEeccChHHHHHHHHHhhccCCCCHHH
Confidence 566765544 889999999999999999998888877653
No 237
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=46.58 E-value=46 Score=20.04 Aligned_cols=37 Identities=11% Similarity=-0.048 Sum_probs=32.1
Q ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEE
Q psy4181 9 RLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLK 45 (73)
Q Consensus 9 ~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLi 45 (73)
+++.-..|+|.|..|+.+.-.|+-.+-|+.|+.....
T Consensus 26 PNqQrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy 62 (107)
T 1rrb_A 26 PNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVF 62 (107)
T ss_dssp TTTCCEEEECCTTCBHHHHHHHHHHHHTCCTTTEEEE
T ss_pred CCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHceeE
Confidence 6777778999999999999999999999998766553
No 238
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=46.15 E-value=27 Score=18.74 Aligned_cols=42 Identities=12% Similarity=0.003 Sum_probs=29.3
Q ss_pred HHHHhCCCCccEEEEEcceEecCC--ccccccCCCCCCEEEEEe
Q psy4181 31 IAAQTGTRWEKIVLKKWYTIFKDH--IRIMDYEIHDGMNLELYY 72 (73)
Q Consensus 31 I~~~~gip~~~QrLif~Gk~L~D~--~tL~~y~I~~g~ti~L~~ 72 (73)
-+++.|+.+....+-.+|..+.+. ..+..+=-..|.++.|.+
T Consensus 40 pA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v 83 (90)
T 2he4_A 40 PAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLV 83 (90)
T ss_dssp HHHHHTCCTTCEEEEETTEECTTSCHHHHHHHHTTSSSEEEEEE
T ss_pred hHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEE
Confidence 467789999999999999999875 333322122367777654
No 239
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=45.13 E-value=29 Score=20.41 Aligned_cols=56 Identities=16% Similarity=0.066 Sum_probs=37.8
Q ss_pred EEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEe-cCCcccccc----CCCCCCEEEEEe
Q psy4181 16 VKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIF-KDHIRIMDY----EIHDGMNLELYY 72 (73)
Q Consensus 16 v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L-~D~~tL~~y----~I~~g~ti~L~~ 72 (73)
+-|..+.||+++..-|..+.++++++--.+|-+..+ .-+.++++. +=. +.-|++.|
T Consensus 48 flVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~-DGfLyi~Y 108 (110)
T 2r2q_A 48 YLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEE-DYFLYVAY 108 (110)
T ss_dssp EEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCT-TSCEEEEE
T ss_pred EEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHHHHHHHcCCC-CCEEEEEE
Confidence 456778999999999999999999886556644434 345555532 222 33566655
No 240
>3ejb_A Acyl carrier protein; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ejd_A* 3eje_A*
Probab=44.45 E-value=23 Score=19.91 Aligned_cols=40 Identities=18% Similarity=0.205 Sum_probs=27.7
Q ss_pred EEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccc-cccCCC
Q psy4181 15 RVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRI-MDYEIH 63 (73)
Q Consensus 15 ~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL-~~y~I~ 63 (73)
......++....|++.|++..|++++. +.++.+| +++|+-
T Consensus 15 ~~~~t~~~i~~~l~~iia~~l~~~~~~---------i~~d~~l~~dLGlD 55 (97)
T 3ejb_A 15 PRGSHMSTIEERVKKIIGEQLGVKQEE---------VTNNASFVEDLGAD 55 (97)
T ss_dssp ---CCCCCHHHHHHHHHHHHSCCCTTT---------SCTTCBTTTTTCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHCcCHHH---------CCCCCCchhhcCCC
Confidence 344566778889999999999998763 3556666 577653
No 241
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0
Probab=42.95 E-value=13 Score=21.97 Aligned_cols=14 Identities=14% Similarity=0.339 Sum_probs=11.6
Q ss_pred ccCCCCCCEEEEEe
Q psy4181 59 DYEIHDGMNLELYY 72 (73)
Q Consensus 59 ~y~I~~g~ti~L~~ 72 (73)
.|.+++|++++|.+
T Consensus 78 ~~~L~~GD~l~Ll~ 91 (102)
T 3kt9_A 78 EVKLQPGQVLHMVN 91 (102)
T ss_dssp EEEECTTCCEEEET
T ss_pred eEEeCCCCEEEEcc
Confidence 37799999999875
No 242
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A*
Probab=42.85 E-value=10 Score=22.82 Aligned_cols=24 Identities=17% Similarity=0.026 Sum_probs=16.3
Q ss_pred EcceEecCCccccccCCCCCCEEEEEe
Q psy4181 46 KWYTIFKDHIRIMDYEIHDGMNLELYY 72 (73)
Q Consensus 46 f~Gk~L~D~~tL~~y~I~~g~ti~L~~ 72 (73)
.+|+.|+-+. .|.+++|++++|.+
T Consensus 74 vng~~l~k~~---~~~L~~GD~leLl~ 97 (110)
T 2brf_A 74 TGTQELKPGL---EGSLGVGDTLYLVN 97 (110)
T ss_dssp EC-CBCCTTC---EEEEETTCEEEEET
T ss_pred ECCEEcCCCC---EEEecCCCEEEEcc
Confidence 4666664333 47899999999975
No 243
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=42.64 E-value=26 Score=18.89 Aligned_cols=43 Identities=16% Similarity=0.071 Sum_probs=29.5
Q ss_pred HHHHHhCCCCccEEEEEcceEec--CCccccccCCCCCCEEEEEe
Q psy4181 30 LIAAQTGTRWEKIVLKKWYTIFK--DHIRIMDYEIHDGMNLELYY 72 (73)
Q Consensus 30 ~I~~~~gip~~~QrLif~Gk~L~--D~~tL~~y~I~~g~ti~L~~ 72 (73)
--+++.|+.+....+-.+|+.+. +...+..+=-..|.++.|.+
T Consensus 38 spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v 82 (91)
T 2vsp_A 38 GPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLV 82 (91)
T ss_dssp SHHHHTTCCTTCEEEEETTEECTTSCHHHHHHHHTTSCSEEEEEE
T ss_pred ChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEE
Confidence 45778899999999999999997 43333322111277777754
No 244
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}
Probab=42.54 E-value=23 Score=19.18 Aligned_cols=42 Identities=17% Similarity=0.091 Sum_probs=30.8
Q ss_pred HHHHhCCCCccEEEEEcceEecCCccccccC--CCCCCEEEEEe
Q psy4181 31 IAAQTGTRWEKIVLKKWYTIFKDHIRIMDYE--IHDGMNLELYY 72 (73)
Q Consensus 31 I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~--I~~g~ti~L~~ 72 (73)
-+++.|+.+....+-.+|+.+.+...++... -..|.++.|.+
T Consensus 46 pA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v 89 (97)
T 2w4f_A 46 PAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRV 89 (97)
T ss_dssp HHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTSCSEEEEEE
T ss_pred hHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHhCCCCeEEEEE
Confidence 4667899999999999999998765543222 13788887764
No 245
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=42.40 E-value=34 Score=20.40 Aligned_cols=56 Identities=13% Similarity=0.036 Sum_probs=37.8
Q ss_pred EEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEe-cCCcccccc----CCCCCCEEEEEe
Q psy4181 16 VKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIF-KDHIRIMDY----EIHDGMNLELYY 72 (73)
Q Consensus 16 v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L-~D~~tL~~y----~I~~g~ti~L~~ 72 (73)
+-|..+.||+++..-|..+.++++++--.+|-+..+ .-+.++.+. +=. +.-|++.|
T Consensus 49 flVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~-DGfLyi~Y 109 (117)
T 1eo6_A 49 YLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDE-DGFLYVAY 109 (117)
T ss_dssp EEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCT-TSCEEEEE
T ss_pred EEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCEecCccchHHHHHHHhCCC-CCEEEEEE
Confidence 456778999999999999999999887566644434 345555532 222 33566655
No 246
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=41.40 E-value=24 Score=17.48 Aligned_cols=20 Identities=20% Similarity=0.222 Sum_probs=14.4
Q ss_pred CCcHHH---HHHHHHHHhCCCCc
Q psy4181 21 DDTIGD---LKKLIAAQTGTRWE 40 (73)
Q Consensus 21 ~~TV~~---lK~~I~~~~gip~~ 40 (73)
+.||.+ |-..+++++|+++.
T Consensus 12 ~lTvlE~~eLvk~leekfGVsaa 34 (40)
T 1dd4_C 12 KLTVSELAELVKKLEDKFGVTAA 34 (40)
T ss_dssp TSCHHHHHHHHHHHHHHTCCCSC
T ss_pred hCcHHHHHHHHHHHHHHHCCCcc
Confidence 456665 45588999999864
No 247
>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium falciparum} SCOP: d.15.4.1
Probab=40.67 E-value=36 Score=18.98 Aligned_cols=26 Identities=31% Similarity=0.493 Sum_probs=19.2
Q ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHH
Q psy4181 2 IEITCNDRLGKKVRVKCNPDDTIGDLK 28 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~~~TV~~lK 28 (73)
.+|.+....| ..++++++..|+.+.=
T Consensus 3 ~~v~~~~~~~-~~~~~~~~g~tlL~a~ 28 (98)
T 1iue_A 3 YNITLRTNDG-EKKIECNEDEYILDAS 28 (98)
T ss_dssp EEEEEEETTE-EEEEEEETTSCHHHHH
T ss_pred EEEEEEeCCC-eEEEEeCCCCcHHHHH
Confidence 4566765455 6788999999998753
No 248
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Probab=40.25 E-value=9.8 Score=21.61 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=17.7
Q ss_pred HHHhCCCCccEEEEEcceEecCCccc
Q psy4181 32 AAQTGTRWEKIVLKKWYTIFKDHIRI 57 (73)
Q Consensus 32 ~~~~gip~~~QrLif~Gk~L~D~~tL 57 (73)
+++.|+.+....+-.+|+.+.+...+
T Consensus 48 A~~aGl~~GD~I~~ing~~v~~~~~~ 73 (113)
T 2pzd_A 48 AHRAGLRPGDVILAIGEQMVQNAEDV 73 (113)
T ss_dssp HHHHTCCTTCEEEEETTEECCSHHHH
T ss_pred HHHcCCCCCCEEEEECCEECCCHHHH
Confidence 45567778877777788777654433
No 249
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}
Probab=39.99 E-value=26 Score=19.04 Aligned_cols=43 Identities=14% Similarity=0.040 Sum_probs=29.4
Q ss_pred HHHHHhCCCCccEEEEEcceEecC--CccccccCCCCCCEEEEEe
Q psy4181 30 LIAAQTGTRWEKIVLKKWYTIFKD--HIRIMDYEIHDGMNLELYY 72 (73)
Q Consensus 30 ~I~~~~gip~~~QrLif~Gk~L~D--~~tL~~y~I~~g~ti~L~~ 72 (73)
--+++.|+.+....+-.+|+.+.+ ...+..+=-..|.++.|.+
T Consensus 41 spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v 85 (96)
T 2v90_A 41 LPAKKAGMQAGDRLVAVAGESVEGLGHEETVSRIQGQGSCVSLTV 85 (96)
T ss_dssp SHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEE
T ss_pred ChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEE
Confidence 346778999999999999999987 2333222112377777754
No 250
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=39.59 E-value=24 Score=18.97 Aligned_cols=43 Identities=14% Similarity=-0.031 Sum_probs=29.6
Q ss_pred HHHHHhCCCCccEEEEEcceEecCCccccc--cCCCCCCEEEEEe
Q psy4181 30 LIAAQTGTRWEKIVLKKWYTIFKDHIRIMD--YEIHDGMNLELYY 72 (73)
Q Consensus 30 ~I~~~~gip~~~QrLif~Gk~L~D~~tL~~--y~I~~g~ti~L~~ 72 (73)
--+++.|+.+..+.+-.+|+.+.+....+. .--..|..+.|.+
T Consensus 43 spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v 87 (91)
T 1m5z_A 43 GPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVI 87 (91)
T ss_dssp SHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEEEEE
T ss_pred CHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEE
Confidence 356668999999999999999987532221 1124577777754
No 251
>3kxt_A Chromatin protein CREN7; protein-DNA complex, crenarchaea chromatin protein, minor-GR binding, methylation; 1.60A {Sulfolobus solfataricus} PDB: 2jtm_A 3lwh_A* 3lwi_A*
Probab=39.56 E-value=21 Score=19.17 Aligned_cols=16 Identities=19% Similarity=0.353 Sum_probs=12.2
Q ss_pred CEEEEEEcCCCCEEEE
Q psy4181 1 MIEITCNDRLGKKVRV 16 (73)
Q Consensus 1 ~~~i~vk~~~G~~~~v 16 (73)
|=.|.|||++|+.+.+
T Consensus 1 ~~~vkvk~p~G~e~~L 16 (56)
T 3kxt_A 1 MKPVKVKTPAGKEAEL 16 (56)
T ss_dssp CCCEEEECTTSCEEEE
T ss_pred CCceEeeCCCCCEEEE
Confidence 4467889998888765
No 252
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}
Probab=39.26 E-value=32 Score=18.30 Aligned_cols=42 Identities=17% Similarity=-0.047 Sum_probs=28.5
Q ss_pred HHHHhCCCCccEEEEEcceEecCCc--cccccCCCCCCEEEEEe
Q psy4181 31 IAAQTGTRWEKIVLKKWYTIFKDHI--RIMDYEIHDGMNLELYY 72 (73)
Q Consensus 31 I~~~~gip~~~QrLif~Gk~L~D~~--tL~~y~I~~g~ti~L~~ 72 (73)
-+++.|+.+....+-.+|+.+.+.. .+...=-..|.++.|.+
T Consensus 39 pA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v 82 (88)
T 2uzc_A 39 KAAQANVRIGDVVLSIDGINAQGMTHLEAQNKIKGCTGSLNMTL 82 (88)
T ss_dssp HHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEE
T ss_pred hHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEE
Confidence 4677899999999999999998762 22211112377776654
No 253
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A
Probab=39.23 E-value=18 Score=19.85 Aligned_cols=43 Identities=14% Similarity=0.179 Sum_probs=29.9
Q ss_pred HHHHHhCCCCccEEEEEcceEecC--CccccccCCCCCCEEEEEe
Q psy4181 30 LIAAQTGTRWEKIVLKKWYTIFKD--HIRIMDYEIHDGMNLELYY 72 (73)
Q Consensus 30 ~I~~~~gip~~~QrLif~Gk~L~D--~~tL~~y~I~~g~ti~L~~ 72 (73)
--+++.|+.+....+-.+|+.+.+ ...+..+=-..|.++.|.+
T Consensus 45 spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v 89 (99)
T 3khf_A 45 SPAQEAGLRAGDLITHINGESVLGLVHMDVVELLLKSGNKISLRT 89 (99)
T ss_dssp SHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEE
T ss_pred CHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCEEEEEE
Confidence 456678999999999999999983 3333322225777877754
No 254
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=39.12 E-value=60 Score=26.53 Aligned_cols=31 Identities=16% Similarity=0.213 Sum_probs=26.8
Q ss_pred EEEEcCCCCEEEEEeCCCCcHHHHHHHHHHH
Q psy4181 4 ITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQ 34 (73)
Q Consensus 4 i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~ 34 (73)
|-+=-++|-.++++|..++|+.++|+++-++
T Consensus 54 vd~LLPnGi~i~~~v~~~~Tl~~iK~~lw~~ 84 (1092)
T 2y3a_A 54 VDFLLPTGIYIQLEVPREATISYIKQMLWKQ 84 (1092)
T ss_dssp EEEECTTCCEEEEEEETTCBHHHHHHHHHHH
T ss_pred EEEECCCceEEEEEecCcccHHHHHHHHHHH
Confidence 3444579999999999999999999998877
No 255
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=38.78 E-value=35 Score=20.54 Aligned_cols=33 Identities=15% Similarity=0.168 Sum_probs=24.7
Q ss_pred CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHH
Q psy4181 1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAA 33 (73)
Q Consensus 1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~ 33 (73)
|=.|.+++.+|+.+.++-....--.-+|.+++.
T Consensus 1 m~~v~L~SsDg~~f~v~~~vA~~S~~ik~ml~~ 33 (141)
T 1fs1_B 1 MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLED 33 (141)
T ss_dssp -CEEEEECTTSCEEEEEGGGGGTCHHHHHHHHH
T ss_pred CCeEEEEeCCCCEEEecHHHHHHhHHHHHHHHh
Confidence 456899999999999976554444567888876
No 256
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=38.23 E-value=29 Score=19.31 Aligned_cols=43 Identities=16% Similarity=0.077 Sum_probs=28.9
Q ss_pred HHHHHhC-CCCccEEEEEcceEecC--CccccccCCCCCCEEEEEe
Q psy4181 30 LIAAQTG-TRWEKIVLKKWYTIFKD--HIRIMDYEIHDGMNLELYY 72 (73)
Q Consensus 30 ~I~~~~g-ip~~~QrLif~Gk~L~D--~~tL~~y~I~~g~ti~L~~ 72 (73)
--+++.| +.+....+-.+|+.+.+ ...+..+--..|.++.|.+
T Consensus 53 spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v 98 (108)
T 1q7x_A 53 GAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLL 98 (108)
T ss_dssp STHHHHTCCCSSCEEEEETTEECBSCTTSHHHHHHHHTTSEEEEEE
T ss_pred ChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEE
Confidence 3466789 99999999999999974 3322222223567777654
No 257
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=37.90 E-value=49 Score=21.08 Aligned_cols=38 Identities=8% Similarity=0.004 Sum_probs=32.3
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEE-EEEcc
Q psy4181 11 GKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIV-LKKWY 48 (73)
Q Consensus 11 G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~Qr-Lif~G 48 (73)
++++++.|++..|=-++|+-++..+|+.+..-+ |+..|
T Consensus 93 ~n~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~ 131 (156)
T 2zkr_s 93 NNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPD 131 (156)
T ss_dssp HCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSS
T ss_pred CCcEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCC
Confidence 368899999999999999999999999998874 44443
No 258
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A
Probab=37.48 E-value=27 Score=18.41 Aligned_cols=24 Identities=17% Similarity=-0.110 Sum_probs=20.6
Q ss_pred HHHHhCCCCccEEEEEcceEecCC
Q psy4181 31 IAAQTGTRWEKIVLKKWYTIFKDH 54 (73)
Q Consensus 31 I~~~~gip~~~QrLif~Gk~L~D~ 54 (73)
-+++.|+.+....+-.+|+.+.+.
T Consensus 37 pA~~aGl~~GD~I~~vng~~v~~~ 60 (85)
T 1rgw_A 37 KAAQSQLSQGDLVVAIDGVNTDTM 60 (85)
T ss_dssp HHHHSSCCCCSBEEEETTEECTTC
T ss_pred HHHHcCCCCCCEEEEECCEECCCc
Confidence 455679999999999999999875
No 259
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=37.14 E-value=29 Score=20.81 Aligned_cols=39 Identities=21% Similarity=0.214 Sum_probs=30.4
Q ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceE
Q psy4181 9 RLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTI 50 (73)
Q Consensus 9 ~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~ 50 (73)
.-|+.+.++ ...+..+...+++..|..+....+.+.|..
T Consensus 98 ~Cg~v~~~~---~~~~~~~~~~~~~~~gf~i~~~~l~~~G~C 136 (145)
T 2fe3_A 98 NCGKIVDFH---YPGLDEVEQLAAHVTGFKVSHHRLEIYGVC 136 (145)
T ss_dssp TTCCEEECC---CCCCHHHHHHHHHHHCCEEEEEEEEEEEEC
T ss_pred CCCCEEEec---CCCHHHHHHHHHHhcCCEEEEEEEEEEEEC
Confidence 357776664 335778888999999999999999988853
No 260
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=36.86 E-value=29 Score=20.58 Aligned_cols=38 Identities=18% Similarity=0.184 Sum_probs=29.8
Q ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcce
Q psy4181 9 RLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYT 49 (73)
Q Consensus 9 ~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk 49 (73)
.-|+.+.++ ...+..+...+++..|..++...+.|.|.
T Consensus 96 ~Cg~v~~~~---~~~~~~~~~~~~~~~gf~i~~~~l~~~G~ 133 (136)
T 1mzb_A 96 DTGEVIEFM---DAEIEKRQKEIVRERGFELVDHNLVLYVR 133 (136)
T ss_dssp TTCCEEEEC---CHHHHHHHHHHHHTTTCCCCCCCCEEEEC
T ss_pred CCCCEEEec---cccHHHHHHHHhhcCCCEEEeEEEEEEEE
Confidence 357777664 34578888899999999999999988774
No 261
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0
Probab=36.65 E-value=31 Score=19.08 Aligned_cols=43 Identities=14% Similarity=0.086 Sum_probs=30.5
Q ss_pred HHHHHhCCCCccEEEEEcceEecCCc--cccccCCCCCCEEEEEe
Q psy4181 30 LIAAQTGTRWEKIVLKKWYTIFKDHI--RIMDYEIHDGMNLELYY 72 (73)
Q Consensus 30 ~I~~~~gip~~~QrLif~Gk~L~D~~--tL~~y~I~~g~ti~L~~ 72 (73)
--+++.|+.+....+-.+|+.+.+.. .+..+=-..|.++.|.+
T Consensus 37 spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v 81 (106)
T 3ngh_A 37 SPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLV 81 (106)
T ss_dssp SHHHHTTCCTTCEEEEETTEECTTSCHHHHHHHHHHTTTEEEEEE
T ss_pred CHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEEE
Confidence 45677899999999999999998764 22222115677887754
No 262
>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=36.43 E-value=52 Score=17.74 Aligned_cols=37 Identities=11% Similarity=-0.011 Sum_probs=25.5
Q ss_pred EEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCc
Q psy4181 4 ITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHI 55 (73)
Q Consensus 4 i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~ 55 (73)
+.|....|..+.|+|..+ | |+-.-+|..+|+.|.+..
T Consensus 14 ~~v~~~~g~~v~l~C~v~--------------~-p~~~v~W~k~g~~i~~~~ 50 (91)
T 2lvc_A 14 VFVHAITSECVMLACEVD--------------R-EDAPVRWYKDGQEVEESD 50 (91)
T ss_dssp EEEECCTTCCEEEEEECS--------------C-TTSCCEEEETTSCCCCCS
T ss_pred eEEEEECCCcEEEEEEEC--------------C-CCcEEEEEECCEEeeeee
Confidence 456666788888888632 4 333568889999987654
No 263
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=35.95 E-value=29 Score=20.88 Aligned_cols=42 Identities=14% Similarity=-0.015 Sum_probs=29.0
Q ss_pred HHHHhCCCCccEEEEEcceEecCCcc-ccccC--CCCCCEEEEEe
Q psy4181 31 IAAQTGTRWEKIVLKKWYTIFKDHIR-IMDYE--IHDGMNLELYY 72 (73)
Q Consensus 31 I~~~~gip~~~QrLif~Gk~L~D~~t-L~~y~--I~~g~ti~L~~ 72 (73)
-+++.|+.+....+-.+|+.+.+... +...= -..|+++.|.+
T Consensus 39 pA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~~~v~l~v 83 (166)
T 1w9e_A 39 PASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTI 83 (166)
T ss_dssp HHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEE
T ss_pred hHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEE
Confidence 45667999999999999999987554 33221 22566776654
No 264
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=35.94 E-value=29 Score=19.40 Aligned_cols=42 Identities=17% Similarity=0.091 Sum_probs=30.6
Q ss_pred HHHHhCCCCccEEEEEcceEecCCccccccC--CCCCCEEEEEe
Q psy4181 31 IAAQTGTRWEKIVLKKWYTIFKDHIRIMDYE--IHDGMNLELYY 72 (73)
Q Consensus 31 I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~--I~~g~ti~L~~ 72 (73)
-+++.|+.+....+-.+|+.+.+...++... -..|.+|.|.+
T Consensus 58 pA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v 101 (110)
T 1x5q_A 58 PAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRV 101 (110)
T ss_dssp HHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHSCCSEEEEEE
T ss_pred HHHHcCCCCCCEEEEECCEECCCcCHHHHHHHhhCCCCeEEEEE
Confidence 4677899999999999999998754433222 23688887764
No 265
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=35.92 E-value=40 Score=20.79 Aligned_cols=38 Identities=18% Similarity=0.280 Sum_probs=30.7
Q ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceE
Q psy4181 10 LGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTI 50 (73)
Q Consensus 10 ~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~ 50 (73)
-|+.+.++ ...+..+.+.+++..|..++..+|.|.|..
T Consensus 113 CG~v~e~~---~~~~~~~~~~~~~~~Gf~i~~~~l~~~GiC 150 (162)
T 4ets_A 113 CGKIIEFE---NPIIERQQALIAKEHGFKLTGHLMQLYGVC 150 (162)
T ss_dssp TCCEEEEC---CHHHHHHHHHHHHHTTCEEEEEEEEEEEEC
T ss_pred CCCEEEec---ccchhHHHHHHHHhCCCEEEEEEEEEEEEC
Confidence 57776664 346788888999999999999999998854
No 266
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A
Probab=35.81 E-value=30 Score=18.72 Aligned_cols=43 Identities=14% Similarity=0.024 Sum_probs=28.9
Q ss_pred HHHHHhC-CCCccEEEEEcceEecCC--ccccccCCCCCCEEEEEe
Q psy4181 30 LIAAQTG-TRWEKIVLKKWYTIFKDH--IRIMDYEIHDGMNLELYY 72 (73)
Q Consensus 30 ~I~~~~g-ip~~~QrLif~Gk~L~D~--~tL~~y~I~~g~ti~L~~ 72 (73)
--+++.| +.+..+.+-.+|+.+.+. ..+...--..|.++.|.+
T Consensus 44 spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~l~v 89 (96)
T 1d5g_A 44 GAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLL 89 (96)
T ss_dssp SHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHSCCSEEEEEE
T ss_pred ChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEE
Confidence 3566789 999999999999999854 222211123577777654
No 267
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Probab=35.15 E-value=30 Score=18.83 Aligned_cols=42 Identities=14% Similarity=0.088 Sum_probs=29.2
Q ss_pred HHHHhC-CCCccEEEEEcceEecCC--ccccccCCCCCCEEEEEe
Q psy4181 31 IAAQTG-TRWEKIVLKKWYTIFKDH--IRIMDYEIHDGMNLELYY 72 (73)
Q Consensus 31 I~~~~g-ip~~~QrLif~Gk~L~D~--~tL~~y~I~~g~ti~L~~ 72 (73)
-+++.| +.+....+-.+|+.+.+. ..+..+=-..|.++.|.+
T Consensus 49 pA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v 93 (98)
T 1ihj_A 49 PAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEI 93 (98)
T ss_dssp HHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEE
T ss_pred HHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCeEEEEE
Confidence 467789 999999999999999875 222222112677877764
No 268
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=34.88 E-value=33 Score=18.94 Aligned_cols=43 Identities=14% Similarity=-0.070 Sum_probs=28.6
Q ss_pred HHHHHhCCCCccEEEEEcceEecCCcccc--ccCCCCCCEEEEEe
Q psy4181 30 LIAAQTGTRWEKIVLKKWYTIFKDHIRIM--DYEIHDGMNLELYY 72 (73)
Q Consensus 30 ~I~~~~gip~~~QrLif~Gk~L~D~~tL~--~y~I~~g~ti~L~~ 72 (73)
--+++.|+.+....+-.+|+.+.+....+ .+--..|..+.|.+
T Consensus 40 spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v 84 (103)
T 1wf7_A 40 GKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTL 84 (103)
T ss_dssp CHHHHTTCCTTCBEEEETTEECSSCCHHHHHHHHHHCSSEEEEEE
T ss_pred CHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEE
Confidence 35677899999999999999998752222 11112366776654
No 269
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.73 E-value=49 Score=19.21 Aligned_cols=34 Identities=9% Similarity=-0.096 Sum_probs=26.3
Q ss_pred CcHHHHHHHHHHHhCCCCccEEEEE--cceEecCCc
Q psy4181 22 DTIGDLKKLIAAQTGTRWEKIVLKK--WYTIFKDHI 55 (73)
Q Consensus 22 ~TV~~lK~~I~~~~gip~~~QrLif--~Gk~L~D~~ 55 (73)
.+..+|+.|..++.+++.+.-+|.- .|..++|++
T Consensus 28 ~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEe 63 (91)
T 2eel_A 28 SSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEE 63 (91)
T ss_dssp SSHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHH
T ss_pred CCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechh
Confidence 3789999999999999866666644 577776654
No 270
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A
Probab=34.43 E-value=36 Score=19.81 Aligned_cols=43 Identities=14% Similarity=0.153 Sum_probs=30.9
Q ss_pred HHHHHhCCCCccEEEEEcceEecCC--cccccc--CCCCCCEEEEEe
Q psy4181 30 LIAAQTGTRWEKIVLKKWYTIFKDH--IRIMDY--EIHDGMNLELYY 72 (73)
Q Consensus 30 ~I~~~~gip~~~QrLif~Gk~L~D~--~tL~~y--~I~~g~ti~L~~ 72 (73)
--+++.|+.+..+.+-.+|+.+.+. ..+..+ ....|.++.|.+
T Consensus 62 spA~~aGL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v 108 (124)
T 3tsv_A 62 SPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILA 108 (124)
T ss_dssp CHHHHTTCCTTEEEEEETTEECSSCCHHHHHHHHHHSCTTCEEEEEE
T ss_pred CHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEE
Confidence 3567789999999999999999876 333332 125777777654
No 271
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=34.11 E-value=73 Score=18.76 Aligned_cols=38 Identities=16% Similarity=-0.021 Sum_probs=32.9
Q ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEE
Q psy4181 9 RLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKK 46 (73)
Q Consensus 9 ~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif 46 (73)
+++.-..|+|.|..|+.+--.|.-.+-|+.|+.....-
T Consensus 21 PNqQrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy~ 58 (96)
T 3ny5_A 21 PNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVYR 58 (96)
T ss_dssp TTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEEE
T ss_pred CCCceEEEEecCCcCHHHHHHHHHHHcCCChHHeEEEE
Confidence 67878889999999999999999999999997765543
No 272
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.04 E-value=27 Score=19.24 Aligned_cols=41 Identities=7% Similarity=-0.015 Sum_probs=29.0
Q ss_pred HHHHhCCCCccEEEEEcceEecCCcccccc--CCCCCCEEEEEe
Q psy4181 31 IAAQTGTRWEKIVLKKWYTIFKDHIRIMDY--EIHDGMNLELYY 72 (73)
Q Consensus 31 I~~~~gip~~~QrLif~Gk~L~D~~tL~~y--~I~~g~ti~L~~ 72 (73)
-+++.|+.+....+-.+|+.+.+.. +.+. .++.|.++.|.+
T Consensus 48 pA~~aGL~~GD~I~~ing~~v~~~~-~~~~~~~~~~~~~v~l~v 90 (100)
T 2eeh_A 48 SAERAGLCVGDKITEVNGLSLESTT-MGSAVKVLTSSSRLHMMV 90 (100)
T ss_dssp HHHHHTCCSSCEEEEETTEECSSCC-HHHHHHHHHSCSSEEEEE
T ss_pred HHHHcCCCCCCEEEEECCEECCCCC-HHHHHHhhcCCCEEEEEE
Confidence 4677899999999999999998753 2221 144567666654
No 273
>1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1
Probab=33.95 E-value=45 Score=22.09 Aligned_cols=44 Identities=9% Similarity=-0.164 Sum_probs=23.7
Q ss_pred EEEcCCCCEE-----EEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcc
Q psy4181 5 TCNDRLGKKV-----RVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWY 48 (73)
Q Consensus 5 ~vk~~~G~~~-----~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~G 48 (73)
||||+||... ..--....|+.+++.+-+.....+..-..-..+|
T Consensus 144 fVKTSTGf~~~~~~~~~~~~~gAt~~dv~lm~~~i~~~g~~v~vKaaGG 192 (226)
T 1vcv_A 144 FIKSSTGFAEEAYAARQGNPVHSTPERAAAIARYIKEKGYRLGVKMAGG 192 (226)
T ss_dssp EEECCCSCCCHHHHHHTTCCSSCCHHHHHHHHHHHHHHTCCCEEEEESS
T ss_pred EEEeCCCCCccccccccCCCCCCCHHHHHHHHHHHHHhCCCceEEEeCC
Confidence 8999999750 0000156888888765544322333334444454
No 274
>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}
Probab=33.74 E-value=24 Score=19.96 Aligned_cols=43 Identities=12% Similarity=0.078 Sum_probs=29.0
Q ss_pred HHHHHhC-CCCccEEEEEcceEec---CCccccccCCCCCCEEEEEe
Q psy4181 30 LIAAQTG-TRWEKIVLKKWYTIFK---DHIRIMDYEIHDGMNLELYY 72 (73)
Q Consensus 30 ~I~~~~g-ip~~~QrLif~Gk~L~---D~~tL~~y~I~~g~ti~L~~ 72 (73)
--+++.| +.+..+.+-.+|+.+. +...+..+=-..|.++.|.+
T Consensus 60 spA~~aG~l~~GD~Il~ing~~v~~~~~~~~~~~~l~~~~~~v~l~v 106 (117)
T 2o2t_A 60 SVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKAKDTVQLVI 106 (117)
T ss_dssp SHHHHHCCCCTTCEEEEETTEECCTTSCHHHHHHHHHHCCSEEEEEE
T ss_pred CHHHHCCCCCCCCEEEEECCEECCCCCCHHHHHHHHHcCCCEEEEEE
Confidence 4567789 9999999999999997 33222221112577777654
No 275
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=33.56 E-value=74 Score=18.63 Aligned_cols=69 Identities=10% Similarity=0.041 Sum_probs=42.9
Q ss_pred EEEEEEcCCCCEEEEEeCC-CCcHHHHHHH---HHHHh-----------CCCC---ccEEEEE--cceEecCCccccccC
Q psy4181 2 IEITCNDRLGKKVRVKCNP-DDTIGDLKKL---IAAQT-----------GTRW---EKIVLKK--WYTIFKDHIRIMDYE 61 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~-~~TV~~lK~~---I~~~~-----------gip~---~~QrLif--~Gk~L~D~~tL~~y~ 61 (73)
|.|.|-..+|....+.|++ .+|+.++-+. +++.. |+.+ ++.-|.| +|+++. .-..+|.
T Consensus 9 i~i~v~~~~~~~~~~~v~t~g~tL~dvLk~~~~ve~e~s~~G~fITsI~G~~ad~~~~~yW~~~vng~~~~--~Ga~~~~ 86 (101)
T 3u7z_A 9 ITVTVIHGDQTENVFEFDTDAKYLGEVLESENLVDGESGEYGLFITTVDEETADDSKQQWWCITKGGEQVN--TSADQTP 86 (101)
T ss_dssp EEEEEECTTSCEEEEEEEECCSBHHHHHHHTTCEEEECCTTSCEEEEETTEECCGGGTEEEEEEETTEECC--SCGGGCB
T ss_pred EEEEEEcCCCceeEEEEcCCccHHHHHHHHcCccccccccccceEEEEcCEecCCCCCCEEEEEECCEEhh--hchhheE
Confidence 5667777778777777765 4456655432 22222 2222 2333433 788875 4667899
Q ss_pred CCCCCEEEEEe
Q psy4181 62 IHDGMNLELYY 72 (73)
Q Consensus 62 I~~g~ti~L~~ 72 (73)
+++|+.|.+.|
T Consensus 87 v~dGD~i~~~~ 97 (101)
T 3u7z_A 87 VSDGDAFELTL 97 (101)
T ss_dssp CCTTCEEEEEE
T ss_pred ecCCCEEEEEE
Confidence 99999998766
No 276
>2j58_A WZA, outer membrane lipoprotein WZA; membrane protein; 2.26A {Escherichia coli} PDB: 2w8i_A 2w8h_A*
Probab=33.49 E-value=1.2e+02 Score=21.11 Aligned_cols=65 Identities=14% Similarity=-0.003 Sum_probs=40.6
Q ss_pred EEEEcCCCCEEEEEeCC-CCcHHHHHHHHHHHhCCCC----ccEEEEEcceEe--------cCCccccccCCCCCCEEEE
Q psy4181 4 ITCNDRLGKKVRVKCNP-DDTIGDLKKLIAAQTGTRW----EKIVLKKWYTIF--------KDHIRIMDYEIHDGMNLEL 70 (73)
Q Consensus 4 i~vk~~~G~~~~v~v~~-~~TV~~lK~~I~~~~gip~----~~QrLif~Gk~L--------~D~~tL~~y~I~~g~ti~L 70 (73)
|+|.---.+.-.+.+.+ ..||.+. |+..-|+.. ..-+|+.+|+.. .+...-.++-+++|++|++
T Consensus 153 V~V~GeV~~PG~y~l~~~~~tl~~a---i~~AGG~t~~a~~~~V~l~R~g~~~~idl~~ll~~g~~~~~~~L~~GD~I~V 229 (359)
T 2j58_A 153 VYVTGEVANSGKQAITNIPLTVMDA---INAAGGLAADADWRNVVLTHNGKDTKISLYALMQKGDLTQNHLLYHGDILFI 229 (359)
T ss_dssp EEEEESBSSCEEEECCSSCCBHHHH---HHHTTSBCTTBCTTCEEEEETTEEEEECHHHHHTTCBGGGCCBCCTTCEEEE
T ss_pred EEEEceecCCeEEEeCCCCCcHHHH---HHHcCCCCcccccceEEEEECCeEEEEEHHHHhhcCCcccceeccCCCeEEE
Confidence 44433223344566666 7777654 666777753 466788888753 2333345677999999987
Q ss_pred E
Q psy4181 71 Y 71 (73)
Q Consensus 71 ~ 71 (73)
.
T Consensus 230 p 230 (359)
T 2j58_A 230 P 230 (359)
T ss_dssp C
T ss_pred e
Confidence 4
No 277
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Probab=33.49 E-value=41 Score=18.28 Aligned_cols=42 Identities=17% Similarity=0.093 Sum_probs=28.7
Q ss_pred HHHHHhC-CCCccEEEEEcceEecCCc--cc-cccCCCCCCEEEEEe
Q psy4181 30 LIAAQTG-TRWEKIVLKKWYTIFKDHI--RI-MDYEIHDGMNLELYY 72 (73)
Q Consensus 30 ~I~~~~g-ip~~~QrLif~Gk~L~D~~--tL-~~y~I~~g~ti~L~~ 72 (73)
--+++.| +.+..+.+-.+|+.+.+.. .+ .... ..|.++.|.+
T Consensus 41 spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~-~~g~~v~l~v 86 (97)
T 1n7e_A 41 GLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQ-MAGETVTLKI 86 (97)
T ss_dssp SHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHH-TCCSEEEEEE
T ss_pred CHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH-cCCCeEEEEE
Confidence 3566779 9999999999999997531 11 1122 4677777654
No 278
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=33.47 E-value=52 Score=19.40 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=15.6
Q ss_pred EEEEEcCCCCEEEEEeCCC
Q psy4181 3 EITCNDRLGKKVRVKCNPD 21 (73)
Q Consensus 3 ~i~vk~~~G~~~~v~v~~~ 21 (73)
.+.|++++|+.+.+.+.|.
T Consensus 25 ~i~v~tldG~~~~v~ip~g 43 (121)
T 1xao_A 25 EFALEHVSGDWLKVGIVPG 43 (121)
T ss_dssp EEEEECTTSCEEEEEECTT
T ss_pred EEEEecCCCCEEEEEeCCC
Confidence 5788999999888888764
No 279
>1vku_A Acyl carrier protein; TM0175, structural genomics, JCSG, Pro structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: a.28.1.1
Probab=33.43 E-value=37 Score=19.35 Aligned_cols=33 Identities=9% Similarity=0.232 Sum_probs=23.6
Q ss_pred CCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCC
Q psy4181 21 DDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEI 62 (73)
Q Consensus 21 ~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I 62 (73)
+.....+++.|++..|+|++. +.++.+|.++|+
T Consensus 16 ~~i~~~l~~ila~~l~v~~~~---------I~~d~~L~dLGl 48 (100)
T 1vku_A 16 KKLIAKFVEIASEKMGKDLET---------VDEENTFKELGF 48 (100)
T ss_dssp HHHHHHHHHHHHHTTCCCCCS---------CCTTSBTTTTTC
T ss_pred HHHHHHHHHHHHHHHCCCHHH---------CCCCCCHHHcCC
Confidence 345678899999999988763 455666666665
No 280
>3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A*
Probab=33.25 E-value=32 Score=23.49 Aligned_cols=24 Identities=13% Similarity=0.005 Sum_probs=18.7
Q ss_pred EEEcCCCCEEEEEeCCCCcHHHHHHHHHH
Q psy4181 5 TCNDRLGKKVRVKCNPDDTIGDLKKLIAA 33 (73)
Q Consensus 5 ~vk~~~G~~~~v~v~~~~TV~~lK~~I~~ 33 (73)
||||+||.. ....|+.+++-+-+.
T Consensus 189 fVKTSTGf~-----~~GAT~edV~lm~~~ 212 (260)
T 3r12_A 189 FVKTSTGFG-----TGGATAEDVHLMKWI 212 (260)
T ss_dssp EEECCCSSS-----SCCCCHHHHHHHHHH
T ss_pred EEEcCCCCC-----CCCCCHHHHHHHHHH
Confidence 899999974 468899998766443
No 281
>3lfh_A Manxa, phosphotransferase system, mannose/fructose-speci component IIA; PTS; 1.80A {Thermoanaerobacter tengcongensis} SCOP: c.54.1.0
Probab=33.00 E-value=73 Score=19.32 Aligned_cols=39 Identities=15% Similarity=0.025 Sum_probs=29.3
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHHh-CC-CCccEEEEE----cceE
Q psy4181 12 KKVRVKCNPDDTIGDLKKLIAAQT-GT-RWEKIVLKK----WYTI 50 (73)
Q Consensus 12 ~~~~v~v~~~~TV~~lK~~I~~~~-gi-p~~~QrLif----~Gk~ 50 (73)
....+++.+++++.++++++.+.. .+ +.+...|++ +|.+
T Consensus 31 ~v~av~~~~~~~~~~~~~~i~~~i~~~~~~~~gvliLtDl~GGSp 75 (144)
T 3lfh_A 31 NVHTVGLNLGDNIEVVRKEVEKIIKEKLQEDKEIIIVVDLFGGSP 75 (144)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHHHHHHTTTCEEEEEESSSSSHH
T ss_pred cEEEEEccCCCCHHHHHHHHHHHHHHhhCCCCcEEEEEeCCCCCH
Confidence 467889999999999999988874 45 656777654 5654
No 282
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=32.71 E-value=41 Score=20.07 Aligned_cols=37 Identities=24% Similarity=0.234 Sum_probs=29.4
Q ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcce
Q psy4181 10 LGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYT 49 (73)
Q Consensus 10 ~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk 49 (73)
-|+.+.++ ...+..+.+.+++..|..++...|.|.|.
T Consensus 93 Cg~v~~~~---~~~~~~~~~~~~~~~gf~i~~~~l~~~Gi 129 (139)
T 3mwm_A 93 CGKAVEVE---GPAVEKWAEAIAAEHGYVNVAHTVEIFGT 129 (139)
T ss_dssp TCCEEEEC---CHHHHHHHHHHHHHTTCCSCCCCCEEEEC
T ss_pred CCCEeecc---cccHHHHHHHHHHhCCCEEEeeEEEEEEE
Confidence 46776663 34577888899999999999999988874
No 283
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A
Probab=32.69 E-value=45 Score=17.11 Aligned_cols=27 Identities=26% Similarity=0.218 Sum_probs=21.2
Q ss_pred HHHHhC-CCCccEEEEEcceEec--CCccc
Q psy4181 31 IAAQTG-TRWEKIVLKKWYTIFK--DHIRI 57 (73)
Q Consensus 31 I~~~~g-ip~~~QrLif~Gk~L~--D~~tL 57 (73)
.+++.| +.+..+.+-.+|+.+. +...+
T Consensus 33 ~A~~aG~l~~GD~I~~ing~~v~~~~~~~~ 62 (81)
T 2rcz_A 33 LAARDGNIQEGDVVLKINGTVTENMSLTDA 62 (81)
T ss_dssp HHHHHSSCCTTCEEEEETTEECTTCCHHHH
T ss_pred hHHHCCCCCCCCEEEEECCEECCCCCHHHH
Confidence 355679 9999999999999998 44433
No 284
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}
Probab=32.30 E-value=41 Score=17.92 Aligned_cols=42 Identities=24% Similarity=-0.009 Sum_probs=27.9
Q ss_pred HHHHhCCCCccEEEEEcceEecCC--ccccccCCCCCCEEEEEe
Q psy4181 31 IAAQTGTRWEKIVLKKWYTIFKDH--IRIMDYEIHDGMNLELYY 72 (73)
Q Consensus 31 I~~~~gip~~~QrLif~Gk~L~D~--~tL~~y~I~~g~ti~L~~ 72 (73)
-+++.|+.+..+.+-.+|+.+.+. ..+...=-..|..+.|.+
T Consensus 39 pA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v 82 (89)
T 2q3g_A 39 KAAQAGVAVGDWVLSIDGENAGSLTHIEAQNKIRACGERLSLGL 82 (89)
T ss_dssp HHHHTTCCTTCEEEEETTEEGGGCCHHHHHHHHHTCTTEEEEEE
T ss_pred HHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEEE
Confidence 556789999999999999999854 222111112366776654
No 285
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}
Probab=32.15 E-value=28 Score=18.90 Aligned_cols=43 Identities=21% Similarity=0.032 Sum_probs=29.3
Q ss_pred HHHHHhC-CCCccEEEEEcceEecCCcccc--ccCCCCCCEEEEEe
Q psy4181 30 LIAAQTG-TRWEKIVLKKWYTIFKDHIRIM--DYEIHDGMNLELYY 72 (73)
Q Consensus 30 ~I~~~~g-ip~~~QrLif~Gk~L~D~~tL~--~y~I~~g~ti~L~~ 72 (73)
--+++.| +.+..+.+-.+|+.+.+....+ ..--..|.++.|.+
T Consensus 40 spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v 85 (95)
T 2vwr_A 40 GLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQASGERVNLTI 85 (95)
T ss_dssp SHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEE
T ss_pred ChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEE
Confidence 4567789 9999999999999997642221 11123577777654
No 286
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=32.05 E-value=72 Score=18.02 Aligned_cols=37 Identities=11% Similarity=-0.048 Sum_probs=32.8
Q ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEE
Q psy4181 9 RLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLK 45 (73)
Q Consensus 9 ~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLi 45 (73)
+++....|+|.|..|+.+--.|+-++-|+.|+.....
T Consensus 9 Pn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~V~ 45 (77)
T 1c1y_B 9 PNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVF 45 (77)
T ss_dssp TTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEE
T ss_pred CCCceEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEE
Confidence 7788888999999999999999999999999776553
No 287
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=32.04 E-value=47 Score=18.79 Aligned_cols=41 Identities=10% Similarity=0.086 Sum_probs=29.6
Q ss_pred HHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181 26 DLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY 71 (73)
Q Consensus 26 ~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~ 71 (73)
+=|+.+-++.++..+|--.|. .++--...||.+.|+.|...
T Consensus 18 eEk~~lL~~y~i~~~qLPrI~-----~~DPvar~~G~k~GdVvkI~ 58 (78)
T 1hmj_A 18 EEVEEILKRYNIKIQQLPKIY-----EDDPVIQEIGAKEGDVVRVI 58 (78)
T ss_pred HHHHHHHHHcCCCHHHCCeee-----CcCHhhHHhCCCCCCEEEEE
Confidence 335678888999887765543 44555667899999998764
No 288
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=32.01 E-value=72 Score=20.19 Aligned_cols=34 Identities=6% Similarity=0.007 Sum_probs=30.3
Q ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEE
Q psy4181 11 GKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVL 44 (73)
Q Consensus 11 G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrL 44 (73)
.+++++.|++..|=-++|+-++..+|+.+..-+-
T Consensus 87 ~N~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNT 120 (150)
T 4a17_R 87 ENTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNT 120 (150)
T ss_dssp SSEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEe
Confidence 4688999999999999999999999999987643
No 289
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=31.94 E-value=70 Score=20.04 Aligned_cols=33 Identities=9% Similarity=-0.022 Sum_probs=29.8
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEE
Q psy4181 12 KKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVL 44 (73)
Q Consensus 12 ~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrL 44 (73)
+++++.|++..|=-++|+-++..+|+.+..-.-
T Consensus 80 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNT 112 (142)
T 3u5e_X 80 NILVFQVSMKANKYQIKKAVKELYEVDVLKVNT 112 (142)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHSCCEEEEEE
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEe
Confidence 688999999999999999999999999987643
No 290
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}
Probab=31.50 E-value=30 Score=18.79 Aligned_cols=43 Identities=16% Similarity=0.003 Sum_probs=28.8
Q ss_pred HHHHHhC-CCCccEEEEEcceEecC--CccccccCCCCCCEEEEEe
Q psy4181 30 LIAAQTG-TRWEKIVLKKWYTIFKD--HIRIMDYEIHDGMNLELYY 72 (73)
Q Consensus 30 ~I~~~~g-ip~~~QrLif~Gk~L~D--~~tL~~y~I~~g~ti~L~~ 72 (73)
--+++.| +.+....+-.+|+.+.+ ...+..+=-..|..+.|.+
T Consensus 43 spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v 88 (97)
T 2jil_A 43 GPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEAALLI 88 (97)
T ss_dssp SHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHSCSEEEEEE
T ss_pred CHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEE
Confidence 3566789 99999999999999987 3333221111577776654
No 291
>2a4a_A Deoxyribose-phosphate aldolase; lyase, TIM beta/alpha barrel, DEOC, DERA, structur genomics, structural genomics consortium, SGC; 1.84A {Plasmodium yoelii yoelii} SCOP: c.1.10.1
Probab=30.86 E-value=56 Score=22.51 Aligned_cols=25 Identities=20% Similarity=0.171 Sum_probs=18.8
Q ss_pred EEEcCCCCEEEEEeCCCCcHHHHHHHHHHH
Q psy4181 5 TCNDRLGKKVRVKCNPDDTIGDLKKLIAAQ 34 (73)
Q Consensus 5 ~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~ 34 (73)
||||.||.. ....|+.+++-+.+..
T Consensus 188 fVKTSTGf~-----~~gAT~edv~lm~~~v 212 (281)
T 2a4a_A 188 FIKTSTGKV-----QINATPSSVEYIIKAI 212 (281)
T ss_dssp EEECCCSCS-----SCCCCHHHHHHHHHHH
T ss_pred EEEeCCCCC-----CCCCCHHHHHHHHHHH
Confidence 899999985 3578888887665443
No 292
>1or5_A Acyl carrier protein; ACP, biosynthesis, frenolicin, holo, polyketide synthase, PKS, biosynthetic protein; NMR {Streptomyces roseofulvus} SCOP: a.28.1.1
Probab=30.85 E-value=40 Score=17.74 Aligned_cols=19 Identities=42% Similarity=0.489 Sum_probs=15.4
Q ss_pred CcHHHHHHHHHHHhCCCCc
Q psy4181 22 DTIGDLKKLIAAQTGTRWE 40 (73)
Q Consensus 22 ~TV~~lK~~I~~~~gip~~ 40 (73)
.+...+++.+++..|++++
T Consensus 4 ~~~~~l~~~l~~~l~~~~~ 22 (83)
T 1or5_A 4 LTVDDLKKLLAETAGEDDS 22 (83)
T ss_dssp SCHHHHHHHHHHHSCCCSS
T ss_pred HHHHHHHHHHHHHhCCCcc
Confidence 4677888889998888875
No 293
>1l5p_A Ferredoxin; [2Fe-2S] cluster, electron transfer, iron-sulfur protein, metalloprotein, oxidoreductase; 2.20A {Trichomonas vaginalis} SCOP: d.15.4.1
Probab=30.72 E-value=36 Score=18.84 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=18.2
Q ss_pred EEEEcCCCCEEEEEeCCCCcHHHH
Q psy4181 4 ITCNDRLGKKVRVKCNPDDTIGDL 27 (73)
Q Consensus 4 i~vk~~~G~~~~v~v~~~~TV~~l 27 (73)
|.| +.+|+..++++.+..|+.+.
T Consensus 3 v~i-~~~g~~~~~~~~~g~tll~a 25 (93)
T 1l5p_A 3 ITA-VKGGVKKQLKFEDDQTLFTV 25 (93)
T ss_dssp EEE-EETTEEEEEECCTTEEHHHH
T ss_pred EEE-EeCCcEEEEEECCCChHHHH
Confidence 444 34798899999999999876
No 294
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=30.60 E-value=57 Score=21.05 Aligned_cols=22 Identities=23% Similarity=0.222 Sum_probs=17.8
Q ss_pred EEEEeCCCCcHHHHHHHHHHHh
Q psy4181 14 VRVKCNPDDTIGDLKKLIAAQT 35 (73)
Q Consensus 14 ~~v~v~~~~TV~~lK~~I~~~~ 35 (73)
..+.+.++||..+|-+++.+.+
T Consensus 155 ~~v~I~~~dt~~~L~~r~~~~~ 176 (212)
T 3av3_A 155 RVVPIVPGEPIEALEERIHQVE 176 (212)
T ss_dssp EEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHH
Confidence 4578899999999998876653
No 295
>1wfy_A Regulator of G-protein signaling 14; RAP1/RAP2 interacting protein; regulators of G-protein signaling, RAS family, structural genomics; NMR {Mus musculus} SCOP: d.15.1.5
Probab=30.50 E-value=17 Score=21.87 Aligned_cols=41 Identities=22% Similarity=0.357 Sum_probs=36.8
Q ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcce
Q psy4181 9 RLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYT 49 (73)
Q Consensus 9 ~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk 49 (73)
+++|++.+...|+-++.++=.=|-++.|...++-.+...|.
T Consensus 25 p~~ksI~IksKptK~l~evLrPIL~KY~l~l~qv~v~~~g~ 65 (104)
T 1wfy_A 25 GLERVVRISAKPTKRLQEALQPILAKHGLSLDQVVLHRPGE 65 (104)
T ss_dssp SSSSEEEEEECSSSBTTTTTHHHHTTTTCCTTTCCBCCTTC
T ss_pred CCCcEEEEEecCCCcHHHHHHHHHHHcCCChhhEEEEecCC
Confidence 68999999999999999999999999999999887766664
No 296
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Probab=30.18 E-value=57 Score=16.94 Aligned_cols=33 Identities=21% Similarity=0.301 Sum_probs=23.9
Q ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCcc
Q psy4181 10 LGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIR 56 (73)
Q Consensus 10 ~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~t 56 (73)
.|..+.+.|..+ |.|+-.-.|..+|+.+.....
T Consensus 22 ~G~~v~l~C~~~--------------g~p~p~v~W~~~~~~~~~~~~ 54 (100)
T 3caf_A 22 AANTVKFRCPAG--------------GNPMPTMRWLKNGKEFKQEHR 54 (100)
T ss_dssp TTCCEEEECCEE--------------EESCCEEEEEETTEECCGGGS
T ss_pred CCCEEEEEEEcc--------------ccCCCEEEEEECCEEcccccc
Confidence 577777777542 567777899999998876543
No 297
>4h40_A Putative cell adhesion protein; fimbrial protein, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 2.57A {Bacteroides fragilis}
Probab=30.14 E-value=36 Score=24.10 Aligned_cols=20 Identities=30% Similarity=0.401 Sum_probs=16.5
Q ss_pred CCccccccCC---CCCCEEEEEe
Q psy4181 53 DHIRIMDYEI---HDGMNLELYY 72 (73)
Q Consensus 53 D~~tL~~y~I---~~g~ti~L~~ 72 (73)
|.++|..+.| .+|+||-|++
T Consensus 39 ~~etl~~~~i~~l~dGsTlwl~v 61 (327)
T 4h40_A 39 DGETLKDRPIFLLEDGSTIRLVV 61 (327)
T ss_dssp BSSSSTTCCCBCCCTTCEEEEEE
T ss_pred CccccCCccceecCCCCEEEEEE
Confidence 5678887776 9999999985
No 298
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=30.10 E-value=58 Score=21.02 Aligned_cols=21 Identities=24% Similarity=0.196 Sum_probs=17.6
Q ss_pred EEEEeCCCCcHHHHHHHHHHH
Q psy4181 14 VRVKCNPDDTIGDLKKLIAAQ 34 (73)
Q Consensus 14 ~~v~v~~~~TV~~lK~~I~~~ 34 (73)
..+.+.++||..+|-+++.+.
T Consensus 153 ~~~~i~~~dt~~~L~~rl~~~ 173 (216)
T 2ywr_A 153 AVVPVLPEDDENTLADRILKW 173 (216)
T ss_dssp EEEECCTTCCHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 457889999999999887764
No 299
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=30.10 E-value=58 Score=21.29 Aligned_cols=22 Identities=27% Similarity=0.208 Sum_probs=18.5
Q ss_pred EEEEeCCCCcHHHHHHHHHHHh
Q psy4181 14 VRVKCNPDDTIGDLKKLIAAQT 35 (73)
Q Consensus 14 ~~v~v~~~~TV~~lK~~I~~~~ 35 (73)
..+.|.++||..+|-+++.+.+
T Consensus 155 ~~v~I~~~dt~~~L~~rl~~~e 176 (215)
T 3kcq_A 155 AAVPVLREDTAESLASRILAAE 176 (215)
T ss_dssp EEEECCTTCCHHHHHHHHHHHH
T ss_pred EEeecCCCCCHHHHHHHHHHHH
Confidence 3578899999999999888764
No 300
>1p1x_A Deoxyribose-phosphate aldolase; alpha-beta barrel, TIM barrel, lyase; 0.99A {Escherichia coli} SCOP: c.1.10.1 PDB: 1jcl_A 1jcj_A* 1ktn_A 3npv_B 3npu_A 3npw_A 3nq2_A 3npx_A 3nq8_A 3q2d_A* 3nr0_A 3nqv_A
Probab=29.99 E-value=41 Score=22.83 Aligned_cols=22 Identities=14% Similarity=0.126 Sum_probs=16.0
Q ss_pred EEEcCCCCEEEEEeCCCCcHHHHHHHH
Q psy4181 5 TCNDRLGKKVRVKCNPDDTIGDLKKLI 31 (73)
Q Consensus 5 ~vk~~~G~~~~v~v~~~~TV~~lK~~I 31 (73)
||||+||.. ....|+.+++-+.
T Consensus 166 fVKTSTGf~-----~~gAt~e~v~lm~ 187 (260)
T 1p1x_A 166 FIKTSTGKV-----AVNATPESARIMM 187 (260)
T ss_dssp EEECCCSCS-----SCCCCHHHHHHHH
T ss_pred EEEeCCCCC-----CCCCCHHHHHHHH
Confidence 899999985 3567888665443
No 301
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=29.95 E-value=71 Score=17.91 Aligned_cols=24 Identities=8% Similarity=0.065 Sum_probs=17.8
Q ss_pred HHHHHHHHHhCCCCccEEEEEcce
Q psy4181 26 DLKKLIAAQTGTRWEKIVLKKWYT 49 (73)
Q Consensus 26 ~lK~~I~~~~gip~~~QrLif~Gk 49 (73)
.+=+.+++..|+|++.....|.--
T Consensus 78 ~i~~~l~~~lgi~~~~v~I~~~e~ 101 (113)
T 1hfo_A 78 KLFDHLNTKLGIPKNRMYIHFVNL 101 (113)
T ss_dssp HHHHHHHHHHCCCGGGEEEEEEEC
T ss_pred HHHHHHHHHhCcCcCeEEEEEEEC
Confidence 344457778999999998887543
No 302
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}
Probab=29.95 E-value=31 Score=18.16 Aligned_cols=24 Identities=21% Similarity=-0.006 Sum_probs=20.1
Q ss_pred HHHHhCCCCccEEEEEcceEecCC
Q psy4181 31 IAAQTGTRWEKIVLKKWYTIFKDH 54 (73)
Q Consensus 31 I~~~~gip~~~QrLif~Gk~L~D~ 54 (73)
-+++.|+.+....+-.+|+.+.+.
T Consensus 35 pA~~aGl~~GD~I~~ing~~v~~~ 58 (83)
T 2kv8_A 35 PADFVGLRAGDQILAVNEINVKKA 58 (83)
T ss_dssp TTTTTTCCTTCEEEEETTEECSSC
T ss_pred hHHHcCCCCCCEEEEECCEECCCC
Confidence 456679999999999999999875
No 303
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Probab=29.88 E-value=33 Score=18.85 Aligned_cols=43 Identities=16% Similarity=0.049 Sum_probs=28.3
Q ss_pred HHHHHhC-CCCccEEEEEcceEecCCcc--ccccCCCCCCEEEEEe
Q psy4181 30 LIAAQTG-TRWEKIVLKKWYTIFKDHIR--IMDYEIHDGMNLELYY 72 (73)
Q Consensus 30 ~I~~~~g-ip~~~QrLif~Gk~L~D~~t--L~~y~I~~g~ti~L~~ 72 (73)
--+++.| +.+..+.+-.+|+.+.+... +..+--..|..+.|.+
T Consensus 45 spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v 90 (102)
T 2i1n_A 45 GAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKEAGPVVRLVV 90 (102)
T ss_dssp SHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHSCSEEEEEE
T ss_pred CHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEE
Confidence 3456789 99999999999999976322 1111123567777654
No 304
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=29.88 E-value=1e+02 Score=25.27 Aligned_cols=30 Identities=20% Similarity=0.300 Sum_probs=26.0
Q ss_pred EEcCCCCEEEEEeCCCCcHHHHHHHHHHHh
Q psy4181 6 CNDRLGKKVRVKCNPDDTIGDLKKLIAAQT 35 (73)
Q Consensus 6 vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~ 35 (73)
+=-++|-.++++|..++|+.++|+++-.+.
T Consensus 47 ~LLPnGi~i~l~v~~~~tl~~iK~~lw~~a 76 (1091)
T 3hhm_A 47 CLLPNGMIVTLECLREATLITIKHELFKEA 76 (1091)
T ss_dssp EECTTSCEEEEEEETTCBHHHHHHHHHHHG
T ss_pred EEcCCCeEEEEEecCCCcHHHHHHHHHHHH
Confidence 334699999999999999999999987765
No 305
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=29.87 E-value=71 Score=18.01 Aligned_cols=24 Identities=8% Similarity=0.104 Sum_probs=17.8
Q ss_pred HHHHHHHHHhCCCCccEEEEEcce
Q psy4181 26 DLKKLIAAQTGTRWEKIVLKKWYT 49 (73)
Q Consensus 26 ~lK~~I~~~~gip~~~QrLif~Gk 49 (73)
.+=+.+++..|+|++.-...|.--
T Consensus 79 ~i~~~l~~~lgi~~~~v~I~~~e~ 102 (115)
T 1uiz_A 79 LLCDILTKQLNIPANRVYINYYDL 102 (115)
T ss_dssp HHHHHHHHHHCCCGGGEEEEEEEC
T ss_pred HHHHHHHHHhCcCcceEEEEEEEC
Confidence 344456778999999999887543
No 306
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}
Probab=29.73 E-value=45 Score=19.65 Aligned_cols=38 Identities=8% Similarity=-0.012 Sum_probs=22.1
Q ss_pred hCCCCccEEEEEcceEecCCcccccc--CCCCCCEEEEEe
Q psy4181 35 TGTRWEKIVLKKWYTIFKDHIRIMDY--EIHDGMNLELYY 72 (73)
Q Consensus 35 ~gip~~~QrLif~Gk~L~D~~tL~~y--~I~~g~ti~L~~ 72 (73)
.|+.+....+-.+|+.+.+...|..+ ..+.|+++.|.+
T Consensus 72 aGL~~GD~I~~inG~~v~~~~~l~~~l~~~~~g~~v~l~v 111 (134)
T 2l97_A 72 GHLEKYDVITKVDDKEIASSTDLQSALYNHSIGDTIKITY 111 (134)
T ss_dssp TTSCSSCEEEEETTEECCCHHHHHHHHHHSSTTCEEEEEE
T ss_pred HCCCCCCEEEEECCEEcCCHHHHHHHHHhCCCCCEEEEEE
Confidence 57777777777777777665444322 123466655543
No 307
>1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A*
Probab=29.67 E-value=59 Score=21.30 Aligned_cols=37 Identities=14% Similarity=-0.009 Sum_probs=24.2
Q ss_pred EEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcce
Q psy4181 5 TCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYT 49 (73)
Q Consensus 5 ~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk 49 (73)
||||+||.. ....|+++++.+-+.. |.+. ....-+|-
T Consensus 149 fVKTsTGf~-----~~gat~~dv~~m~~~v-g~~v--~VkaaGGi 185 (220)
T 1ub3_A 149 FLKTSTGFG-----PRGASLEDVALLVRVA-QGRA--QVKAAGGI 185 (220)
T ss_dssp EEECCCSSS-----SCCCCHHHHHHHHHHH-TTSS--EEEEESSC
T ss_pred EEEeCCCCC-----CCCCCHHHHHHHHHhh-CCCC--eEEEECCC
Confidence 899999875 2567888887665443 5443 44455553
No 308
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=29.65 E-value=26 Score=20.02 Aligned_cols=20 Identities=20% Similarity=0.312 Sum_probs=17.3
Q ss_pred cHHHHHHHHHHHhCCCCccE
Q psy4181 23 TIGDLKKLIAAQTGTRWEKI 42 (73)
Q Consensus 23 TV~~lK~~I~~~~gip~~~Q 42 (73)
|+.++.+.+++.+|++++..
T Consensus 2 t~~~I~~~Va~~f~i~~~dl 21 (94)
T 1j1v_A 2 TIDNIQKTVAEYYKIKVADL 21 (94)
T ss_dssp CHHHHHHHHHHHTTCCHHHH
T ss_pred CHHHHHHHHHHHhCCCHHHH
Confidence 68889999999999998764
No 309
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=29.60 E-value=59 Score=21.36 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=17.9
Q ss_pred EEEEeCCCCcHHHHHHHHHHHh
Q psy4181 14 VRVKCNPDDTIGDLKKLIAAQT 35 (73)
Q Consensus 14 ~~v~v~~~~TV~~lK~~I~~~~ 35 (73)
..+.|.++||..+|-+++.+.+
T Consensus 174 ~~v~I~~~dt~~~L~~rl~~~~ 195 (229)
T 3auf_A 174 AAVPVLEGDTVEDLRRRILAEE 195 (229)
T ss_dssp EEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHH
Confidence 4578899999999999887653
No 310
>1pdo_A Mannose permease; phosphoenolpyruvate dependent phosphotransferase system, phosphotransferase; 1.70A {Escherichia coli} SCOP: c.54.1.1 PDB: 1vrc_A 1vsq_A* 2jzo_A 2jzn_A
Probab=29.41 E-value=91 Score=18.37 Aligned_cols=40 Identities=20% Similarity=0.004 Sum_probs=30.3
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHHh-CCCCccEEEEE----cceEe
Q psy4181 12 KKVRVKCNPDDTIGDLKKLIAAQT-GTRWEKIVLKK----WYTIF 51 (73)
Q Consensus 12 ~~~~v~v~~~~TV~~lK~~I~~~~-gip~~~QrLif----~Gk~L 51 (73)
....+...+++++.++.+++.+.. .++.+...|++ +|.+.
T Consensus 29 ~v~ai~~~~~~~~~~~~~~i~~~i~~~~~~~gvliLtDl~GGSp~ 73 (135)
T 1pdo_A 29 NVGWIDFVPGENAETLIEKYNAQLAKLDTTKGVLFLVDTWGGSPF 73 (135)
T ss_dssp SEEEECBCTTCCHHHHHHHHHHHHTTSCCTTCEEEEESSTTSHHH
T ss_pred CEEEEEeeCCCCHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHH
Confidence 467788899999999999998875 56666677765 56543
No 311
>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O
Probab=29.29 E-value=35 Score=18.87 Aligned_cols=32 Identities=19% Similarity=0.149 Sum_probs=23.4
Q ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCc
Q psy4181 10 LGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHI 55 (73)
Q Consensus 10 ~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~ 55 (73)
.|..+.|.|.. .|.|.-.-+|.++|+.|.+..
T Consensus 27 ~G~~~~l~C~~--------------~G~P~p~v~W~k~g~~l~~~~ 58 (107)
T 3knb_B 27 SGAEAELKCVV--------------LGEPPPVVVWEKGGQQLAASE 58 (107)
T ss_dssp TTSCEEEEEEE--------------EEESCCEEEEEETTEECCCCS
T ss_pred CCCcEEEEEEE--------------EEecCCEEEEEECccccccee
Confidence 46666666643 477887899999999997544
No 312
>1frd_A Heterocyst [2Fe-2S] ferredoxin; electron transport; 1.70A {Nostoc SP} SCOP: d.15.4.1
Probab=29.25 E-value=76 Score=17.42 Aligned_cols=35 Identities=11% Similarity=0.172 Sum_probs=22.7
Q ss_pred EEEEEEcCCC-CEEEEEeCCCCcHHHHHHHHHHHhCCCCc
Q psy4181 2 IEITCNDRLG-KKVRVKCNPDDTIGDLKKLIAAQTGTRWE 40 (73)
Q Consensus 2 ~~i~vk~~~G-~~~~v~v~~~~TV~~lK~~I~~~~gip~~ 40 (73)
.+|.+...++ +..++++++..|+.+.=. +.|+++.
T Consensus 3 ~~V~~~~~~~~~~~~~~~~~g~tlL~a~~----~~gi~i~ 38 (98)
T 1frd_A 3 YQVRLINKKQDIDTTIEIDEETTILDGAE----ENGIELP 38 (98)
T ss_dssp EEEEEEETTTTEEEEEEEETTSCHHHHHH----HTTCCCC
T ss_pred eEEEEEeCCCCCCEEEEeCCCCcHHHHHH----HcCCCcc
Confidence 4666765443 266788899999987533 3566544
No 313
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=29.12 E-value=62 Score=21.16 Aligned_cols=22 Identities=18% Similarity=0.081 Sum_probs=18.5
Q ss_pred EEEEeCCCCcHHHHHHHHHHHh
Q psy4181 14 VRVKCNPDDTIGDLKKLIAAQT 35 (73)
Q Consensus 14 ~~v~v~~~~TV~~lK~~I~~~~ 35 (73)
..+.+.++||..+|-+++.+.+
T Consensus 162 ~~v~I~~~dt~~~L~~rl~~~~ 183 (215)
T 3da8_A 162 QPVPVLDGDDEETLHERIKVTE 183 (215)
T ss_dssp EEEECCTTCCHHHHHHHHHHHH
T ss_pred EEeecCCCCCHHHHHHHHHHHH
Confidence 4578899999999999988754
No 314
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=29.01 E-value=41 Score=19.01 Aligned_cols=40 Identities=8% Similarity=-0.065 Sum_probs=29.1
Q ss_pred HHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181 27 LKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY 71 (73)
Q Consensus 27 lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~ 71 (73)
=|+.+-++.++..+|--.| +.++--...||.+.|+.|...
T Consensus 21 Ek~~lL~~y~i~~~qLP~I-----~~~DPvar~~G~k~GdVvkI~ 60 (77)
T 1eik_A 21 EAKRVLKELDAHPEQLPKI-----KTTDPVAKAIGAKRGDIVKII 60 (77)
T ss_dssp HHHHHHHHTTCCTTTSCCC-----BTTSHHHHGGGCCTTCEEEEE
T ss_pred HHHHHHHHcCCCHHHCCee-----eCcCHhhHHhCCCCCCEEEEE
Confidence 3567888899988775443 344555677899999998764
No 315
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=28.88 E-value=63 Score=21.02 Aligned_cols=22 Identities=18% Similarity=0.101 Sum_probs=18.6
Q ss_pred EEEEeCCCCcHHHHHHHHHHHh
Q psy4181 14 VRVKCNPDDTIGDLKKLIAAQT 35 (73)
Q Consensus 14 ~~v~v~~~~TV~~lK~~I~~~~ 35 (73)
..+.+.++||..+|-+++.+.+
T Consensus 159 ~~v~I~~~dt~~~L~~r~~~~~ 180 (209)
T 4ds3_A 159 AAVPVLDGDTAETLAARVLKAE 180 (209)
T ss_dssp EEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHH
Confidence 3578899999999999988764
No 316
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=28.83 E-value=63 Score=18.87 Aligned_cols=38 Identities=13% Similarity=0.108 Sum_probs=29.6
Q ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcce
Q psy4181 9 RLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYT 49 (73)
Q Consensus 9 ~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk 49 (73)
.-|+.+.++. ..+.++...+++..|..++...+.+.|.
T Consensus 88 ~Cg~v~~~~~---~~~~~~~~~~~~~~gf~i~~~~l~~~G~ 125 (131)
T 2o03_A 88 SCGSTIEVGD---HEVEAWAAEVATKHGFSDVSHTIEIFGT 125 (131)
T ss_dssp TTCCEEEECC---HHHHHHHHHHHHHTTCSSCCCCCEEEEC
T ss_pred CCCCEEEECC---cCHHHHHHHHHHhcCCEEeccEEEEEEE
Confidence 3577776643 3477888899999999999999988774
No 317
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=28.70 E-value=64 Score=16.85 Aligned_cols=20 Identities=20% Similarity=0.519 Sum_probs=15.4
Q ss_pred EEEeCCCCcHHHHHHHHHHH
Q psy4181 15 RVKCNPDDTIGDLKKLIAAQ 34 (73)
Q Consensus 15 ~v~v~~~~TV~~lK~~I~~~ 34 (73)
.+.|+|++||.+.-+.+.++
T Consensus 2 ~vtv~p~~tv~ea~~~M~~~ 21 (70)
T 3ghd_A 2 AIVVQPKDTVDRVAKILSRN 21 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHT
T ss_pred CEEECCCCcHHHHHHHHHHc
Confidence 36789999999987666554
No 318
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=28.68 E-value=88 Score=18.53 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=25.3
Q ss_pred CEEEEEe----CCCCcHHHHHHHHHHHhCCCCccEEEEEc
Q psy4181 12 KKVRVKC----NPDDTIGDLKKLIAAQTGTRWEKIVLKKW 47 (73)
Q Consensus 12 ~~~~v~v----~~~~TV~~lK~~I~~~~gip~~~QrLif~ 47 (73)
+.+.++| .++-+-.+++++|++..+.+++.- .+|+
T Consensus 25 ke~~~~v~Hpg~~tpsk~eirekLA~~~~~~~d~V-vv~~ 63 (107)
T 2v94_A 25 KEIYFEIYHPGEPTPSRKDVKGKLVAMLDLNPETT-VIQY 63 (107)
T ss_dssp EEEEEEEECTTSCCCCHHHHHHHHHHHHTCCGGGE-EEEE
T ss_pred EEEEEEEEeCCCCCCCHHHHHHHHHHHHCCCCCEE-EEEe
Confidence 4555554 256678899999999999998754 4443
No 319
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel 3 chimera; PDZ domain, PDZ binding, GIRK3 regulation, early endosomes; 1.68A {Rattus norvegicus} SCOP: b.36.1.0 PDB: 3qdo_A 3qgl_A
Probab=28.61 E-value=33 Score=19.02 Aligned_cols=43 Identities=19% Similarity=0.093 Sum_probs=28.9
Q ss_pred HHHHHhCCCCccEEEEEcceEecC--CccccccCCCCCCEEEEEe
Q psy4181 30 LIAAQTGTRWEKIVLKKWYTIFKD--HIRIMDYEIHDGMNLELYY 72 (73)
Q Consensus 30 ~I~~~~gip~~~QrLif~Gk~L~D--~~tL~~y~I~~g~ti~L~~ 72 (73)
--+++.|+.+..+.+-.+|+.+.+ ...+..+=-..|.++.|.+
T Consensus 54 spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v 98 (107)
T 3qe1_A 54 GAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTV 98 (107)
T ss_dssp SHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHHCSSEEEEEE
T ss_pred CHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEE
Confidence 346678999999999999999983 2333222113477777654
No 320
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=28.48 E-value=65 Score=20.82 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=18.0
Q ss_pred EEEEeCCCCcHHHHHHHHHHHh
Q psy4181 14 VRVKCNPDDTIGDLKKLIAAQT 35 (73)
Q Consensus 14 ~~v~v~~~~TV~~lK~~I~~~~ 35 (73)
..+.+.++||..+|-+++.+.+
T Consensus 152 ~~v~I~~~dt~~~L~~rl~~~~ 173 (209)
T 1meo_A 152 EAVPVKRGDTVATLSERVKLAE 173 (209)
T ss_dssp EEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHH
Confidence 4578899999999999887653
No 321
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=28.44 E-value=69 Score=18.34 Aligned_cols=42 Identities=14% Similarity=0.041 Sum_probs=28.1
Q ss_pred HHHHhCCCCccEEEEEcceEecCCcccccc-CCCCCCEEEEEe
Q psy4181 31 IAAQTGTRWEKIVLKKWYTIFKDHIRIMDY-EIHDGMNLELYY 72 (73)
Q Consensus 31 I~~~~gip~~~QrLif~Gk~L~D~~tL~~y-~I~~g~ti~L~~ 72 (73)
-+++.|+.+....+-.+|+.+.+....+-. .++.+..+.|.+
T Consensus 58 pA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~v~l~v 100 (128)
T 1uf1_A 58 EAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKSSRHLILTV 100 (128)
T ss_dssp HHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHTTCSEEEEEE
T ss_pred HHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCeEEEEE
Confidence 466789999999998999998764321111 245566776654
No 322
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=28.35 E-value=38 Score=17.08 Aligned_cols=19 Identities=11% Similarity=0.263 Sum_probs=12.7
Q ss_pred CccccccCCCCCCEEEEEe
Q psy4181 54 HIRIMDYEIHDGMNLELYY 72 (73)
Q Consensus 54 ~~tL~~y~I~~g~ti~L~~ 72 (73)
..-.+.+||++|+.+.+..
T Consensus 18 k~ir~~lgi~~Gd~v~i~~ 36 (53)
T 2l66_A 18 AKVRQKFQIKEGDLVKVTF 36 (53)
T ss_dssp HHHHHHSCCCTTCEEEEEE
T ss_pred HHHHHHcCcCCCCEEEEEE
Confidence 3445667888888877653
No 323
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=28.27 E-value=65 Score=21.04 Aligned_cols=22 Identities=27% Similarity=0.288 Sum_probs=18.5
Q ss_pred EEEEeCCCCcHHHHHHHHHHHh
Q psy4181 14 VRVKCNPDDTIGDLKKLIAAQT 35 (73)
Q Consensus 14 ~~v~v~~~~TV~~lK~~I~~~~ 35 (73)
..+.+.++||..+|-+++.+.+
T Consensus 154 ~~v~I~~~dt~~~L~~rl~~~~ 175 (211)
T 3p9x_A 154 EAVSIEEEDTLETLTTKIQAVE 175 (211)
T ss_dssp EEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHH
Confidence 3578899999999999988754
No 324
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=28.02 E-value=80 Score=17.78 Aligned_cols=26 Identities=12% Similarity=-0.078 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhCCCCccEEEEEcce
Q psy4181 24 IGDLKKLIAAQTGTRWEKIVLKKWYT 49 (73)
Q Consensus 24 V~~lK~~I~~~~gip~~~QrLif~Gk 49 (73)
++.+=+.+++..|+|++.-...|.--
T Consensus 77 ~~~i~~~l~~~lgi~~~~v~I~~~e~ 102 (115)
T 2xcz_A 77 SELVCGHIEQNLGIPADRIYIGFEDV 102 (115)
T ss_dssp HHHHHHHHHHHHCCCGGGEEEEEEEC
T ss_pred HHHHHHHHHHHhCcCcccEEEEEEEC
Confidence 44555677788999999999887543
No 325
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=27.99 E-value=39 Score=18.67 Aligned_cols=42 Identities=17% Similarity=-0.083 Sum_probs=27.1
Q ss_pred HHHHhCCCCccEEEEEcceEecC--CccccccCCCCCCEEEEEe
Q psy4181 31 IAAQTGTRWEKIVLKKWYTIFKD--HIRIMDYEIHDGMNLELYY 72 (73)
Q Consensus 31 I~~~~gip~~~QrLif~Gk~L~D--~~tL~~y~I~~g~ti~L~~ 72 (73)
-+++.|+.+....+-.+|+.+.+ ...+..+=-..|..+.|.+
T Consensus 41 pA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v 84 (103)
T 1v5l_A 41 KAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKI 84 (103)
T ss_dssp TTGGGTCCTTCBEEEETTEECSSCCHHHHHHHHTTCCSEEECEE
T ss_pred HHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEE
Confidence 35668899999999889999877 3333322111266776654
No 326
>3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis}
Probab=27.98 E-value=90 Score=21.58 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=18.6
Q ss_pred EEEcCCCCEEEEEeCCCCcHHHHHHHHHHH
Q psy4181 5 TCNDRLGKKVRVKCNPDDTIGDLKKLIAAQ 34 (73)
Q Consensus 5 ~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~ 34 (73)
||||+||.. ....|+.+++-+-+-.
T Consensus 204 fVKTSTGf~-----~~GAT~edv~lmr~~v 228 (288)
T 3oa3_A 204 YVKTSTGFN-----GPGASIENVSLMSAVC 228 (288)
T ss_dssp EEECCCSSS-----SCCCCHHHHHHHHHHH
T ss_pred EEEcCCCCC-----CCCCCHHHHHHHHHHH
Confidence 899999974 4678888887654443
No 327
>2l9f_A CALE8, meacp; transferase, acyl carrier protein; NMR {Micromonospora echinospora}
Probab=27.93 E-value=52 Score=19.44 Aligned_cols=21 Identities=14% Similarity=0.188 Sum_probs=17.9
Q ss_pred CCcHHHHHHHHHHHhCCCCcc
Q psy4181 21 DDTIGDLKKLIAAQTGTRWEK 41 (73)
Q Consensus 21 ~~TV~~lK~~I~~~~gip~~~ 41 (73)
++....+|+-++++.|+|++.
T Consensus 13 ~~I~~~V~~ilaE~lev~~e~ 33 (102)
T 2l9f_A 13 TGALELVRHLVAERAELPVEV 33 (102)
T ss_dssp CCHHHHHHHHHHHHTTSCSSS
T ss_pred HHHHHHHHHHHHHHHCCCHHH
Confidence 456678999999999999986
No 328
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=27.92 E-value=35 Score=18.03 Aligned_cols=14 Identities=21% Similarity=0.169 Sum_probs=6.5
Q ss_pred ccccCCCCCCEEEE
Q psy4181 57 IMDYEIHDGMNLEL 70 (73)
Q Consensus 57 L~~y~I~~g~ti~L 70 (73)
.+.+||++|+.|.+
T Consensus 31 R~~Lgi~~Gd~l~i 44 (59)
T 1yfb_A 31 RRTLGIAEKDALEI 44 (59)
T ss_dssp HHHTTCCTTCEEEE
T ss_pred HHHcCCCCCCEEEE
Confidence 34445555554443
No 329
>1ltr_D ETB-R2, heat-labIle enterotoxin; B subunit, anti-HSV; 3.04A {Escherichia coli} SCOP: b.40.2.1
Probab=27.80 E-value=43 Score=19.91 Aligned_cols=39 Identities=23% Similarity=0.277 Sum_probs=25.0
Q ss_pred EEcCCCCEEEEEeCCCCcHHHHHHHHHH---------HhCCCCccEEE
Q psy4181 6 CNDRLGKKVRVKCNPDDTIGDLKKLIAA---------QTGTRWEKIVL 44 (73)
Q Consensus 6 vk~~~G~~~~v~v~~~~TV~~lK~~I~~---------~~gip~~~QrL 44 (73)
+-..+|-++.++|.-+.-+..-|.-|+. -.|+-++.-+.
T Consensus 40 isf~ngatfqvevpgsqh~~sqk~~~ermkdtlr~ay~t~~ki~klcv 87 (113)
T 1ltr_D 40 ITFKSGATFQVEVPGSQHIDSQKKAIERMKDTLRITYLTETKIDKLCV 87 (113)
T ss_dssp EECTTSCEEEECCCSTTSCSHHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred EEecCCcEEEEecCcchhhhhhhhHHHHHHHHHHHHHHhccchhheee
Confidence 3445799999999888766655554433 34666655443
No 330
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=27.76 E-value=68 Score=20.74 Aligned_cols=21 Identities=19% Similarity=0.283 Sum_probs=17.2
Q ss_pred EEEEeCCCCcHHHHHHHHHHH
Q psy4181 14 VRVKCNPDDTIGDLKKLIAAQ 34 (73)
Q Consensus 14 ~~v~v~~~~TV~~lK~~I~~~ 34 (73)
..+.+.++||..+|-+++.+.
T Consensus 152 ~~v~I~~~dt~~~L~~rl~~~ 172 (212)
T 1jkx_A 152 AKVPVFAGDSEDDITARVQTQ 172 (212)
T ss_dssp EEEECCTTCCHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 457889999999999887654
No 331
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=27.74 E-value=39 Score=18.50 Aligned_cols=41 Identities=15% Similarity=0.129 Sum_probs=27.7
Q ss_pred HHHHhCCCCccEEEEEcceEecCCccccccC-CCCCCEEEEE
Q psy4181 31 IAAQTGTRWEKIVLKKWYTIFKDHIRIMDYE-IHDGMNLELY 71 (73)
Q Consensus 31 I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~-I~~g~ti~L~ 71 (73)
-+++.|+.+..+.+-.+|+.+.+....+... ++.+..+.|.
T Consensus 47 pA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~v~l~ 88 (101)
T 1uez_A 47 LAEKEGLRVGDQILRVNDKSLARVTHAEAVKALKGSKKLVLS 88 (101)
T ss_dssp HHHHHTCCSSCCEEEETTEECSSCCHHHHHHHSSSSSSCCEE
T ss_pred HHHHcCCCCCCEEEEECCEECCCcCHHHHHHhhcCCCeEEEE
Confidence 4667899999999999999997754433222 3445544443
No 332
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ...
Probab=27.72 E-value=81 Score=17.95 Aligned_cols=24 Identities=13% Similarity=0.111 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhCCCCccEEEEEcc
Q psy4181 25 GDLKKLIAAQTGTRWEKIVLKKWY 48 (73)
Q Consensus 25 ~~lK~~I~~~~gip~~~QrLif~G 48 (73)
+.+=+-+++..|+|+++..+.|.-
T Consensus 77 ~~i~~~l~~~Lgi~~~riyI~f~d 100 (114)
T 3djh_A 77 KLLCGLLAERLRISPDRVYINYYD 100 (114)
T ss_dssp HHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHhCcCcceEEEEEEE
Confidence 445556778899999999998753
No 333
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=27.67 E-value=74 Score=19.14 Aligned_cols=39 Identities=13% Similarity=0.134 Sum_probs=30.9
Q ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceE
Q psy4181 9 RLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTI 50 (73)
Q Consensus 9 ~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~ 50 (73)
.-|+.+.++ ...+..+...+++..|..+....+.|.|..
T Consensus 104 ~Cg~v~~~~---~~~~~~~~~~~~~~~gf~i~~~~l~~~GiC 142 (150)
T 2xig_A 104 HCGKIIEFA---DPEIENRQNEVVKKYQAKLISHDMKMFVWC 142 (150)
T ss_dssp TTCCEEEEC---CHHHHHHHHHHHHTTTCEEEEEEEEEEEEC
T ss_pred CCCCEEEec---CCCHHHHHHHHHHHcCCEEeeeEEEEEEEC
Confidence 357777664 345788888999999999999999988854
No 334
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=27.64 E-value=29 Score=20.18 Aligned_cols=21 Identities=14% Similarity=-0.050 Sum_probs=18.3
Q ss_pred CCcHHHHHHHHHHHhCCCCcc
Q psy4181 21 DDTIGDLKKLIAAQTGTRWEK 41 (73)
Q Consensus 21 ~~TV~~lK~~I~~~~gip~~~ 41 (73)
.-|+.++.+.+++.+|+++++
T Consensus 4 ~it~~~I~~~Va~~f~v~~~d 24 (101)
T 3pvv_A 4 MISAATIMAATAEYFDTTVEE 24 (101)
T ss_dssp -CCHHHHHHHHHHHTTCCHHH
T ss_pred CCCHHHHHHHHHHHHCCCHHH
Confidence 468999999999999999876
No 335
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=27.52 E-value=98 Score=18.18 Aligned_cols=28 Identities=14% Similarity=0.123 Sum_probs=21.7
Q ss_pred CCCCcHHHHHHHHHHHhCCCCccEEEEEc
Q psy4181 19 NPDDTIGDLKKLIAAQTGTRWEKIVLKKW 47 (73)
Q Consensus 19 ~~~~TV~~lK~~I~~~~gip~~~QrLif~ 47 (73)
.|+-+-.++|+++++..+.+++.- .+|+
T Consensus 27 ~~tpsk~eirekLAk~~~~~~d~V-vv~~ 54 (102)
T 1ywx_A 27 AATPSIKDVKMKLVAVLNANKQVL-VVDT 54 (102)
T ss_dssp SCCCCHHHHHHHHHHHHTSCSTTE-EEEE
T ss_pred CCCCCHHHHHHHHHHHHCCCCCEE-EEEc
Confidence 356677899999999999998754 4444
No 336
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii}
Probab=27.43 E-value=83 Score=17.82 Aligned_cols=24 Identities=13% Similarity=0.006 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhCCCCccEEEEEcc
Q psy4181 25 GDLKKLIAAQTGTRWEKIVLKKWY 48 (73)
Q Consensus 25 ~~lK~~I~~~~gip~~~QrLif~G 48 (73)
+.+=+-+++..|+|++...+.|.-
T Consensus 78 ~~i~~~l~~~Lgi~~~riyI~f~d 101 (114)
T 4dh4_A 78 AALSAACERHLGVPKNRIYTTFTN 101 (114)
T ss_dssp HHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHhCcCcccEEEEEEe
Confidence 344456777899999999998854
No 337
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=27.36 E-value=98 Score=18.11 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=20.9
Q ss_pred CCCCcHHHHHHHHHHHhCCCCccEEE
Q psy4181 19 NPDDTIGDLKKLIAAQTGTRWEKIVL 44 (73)
Q Consensus 19 ~~~~TV~~lK~~I~~~~gip~~~QrL 44 (73)
.|+-+-.++|++|++..+.+++.-.+
T Consensus 27 ~~tpsk~eirekLAk~~~~~~~~Vvv 52 (101)
T 1xn9_A 27 GSTPSRNDVRNKLAAMLNAPLELLVI 52 (101)
T ss_dssp SSCCCHHHHHHHHHHHTTCCTTTEEE
T ss_pred CCCCCHHHHHHHHHHHHCCCCCEEEE
Confidence 36667789999999999999875433
No 338
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=27.28 E-value=85 Score=19.08 Aligned_cols=41 Identities=10% Similarity=0.055 Sum_probs=31.2
Q ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHhCCCCc------cEEE---EEcceE
Q psy4181 10 LGKKVRVKCNPDDTIGDLKKLIAAQTGTRWE------KIVL---KKWYTI 50 (73)
Q Consensus 10 ~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~------~QrL---if~Gk~ 50 (73)
+..-+++.+..+.|+.+++..++++.+..-+ .+.| -++|..
T Consensus 18 Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk 67 (120)
T 2dhz_A 18 DHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEK 67 (120)
T ss_dssp TSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCC
T ss_pred cCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcE
Confidence 4456678888999999999999999987554 6766 345553
No 339
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=27.24 E-value=70 Score=20.90 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=18.1
Q ss_pred EEEEeCCCCcHHHHHHHHHHHh
Q psy4181 14 VRVKCNPDDTIGDLKKLIAAQT 35 (73)
Q Consensus 14 ~~v~v~~~~TV~~lK~~I~~~~ 35 (73)
..+.+.++||..+|-+++.+.+
T Consensus 156 ~~v~I~~~dt~~~L~~rl~~~~ 177 (215)
T 3tqr_A 156 ARLSITPQDTPETLKTRVHALE 177 (215)
T ss_dssp EEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHH
Confidence 3578899999999999887654
No 340
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Probab=27.22 E-value=49 Score=18.03 Aligned_cols=42 Identities=12% Similarity=0.004 Sum_probs=28.5
Q ss_pred HHHHhC-CCCccEEEEEcceEecCCccccc--cCCCCCCEEEEEe
Q psy4181 31 IAAQTG-TRWEKIVLKKWYTIFKDHIRIMD--YEIHDGMNLELYY 72 (73)
Q Consensus 31 I~~~~g-ip~~~QrLif~Gk~L~D~~tL~~--y~I~~g~ti~L~~ 72 (73)
-+++.| +.+..+.+-.+|+.+.+....+. .--..|.++.|.+
T Consensus 47 pA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v 91 (104)
T 3i4w_A 47 PADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIA 91 (104)
T ss_dssp HHHHHCCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCSEEEEEE
T ss_pred hHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEE
Confidence 467789 99999999999999865433222 2123567776654
No 341
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=27.09 E-value=63 Score=19.10 Aligned_cols=40 Identities=15% Similarity=0.077 Sum_probs=27.9
Q ss_pred EEEeCCCCcHHHHHHHHHHHhCCCCc--cEEEE--EcceEecCCc
Q psy4181 15 RVKCNPDDTIGDLKKLIAAQTGTRWE--KIVLK--KWYTIFKDHI 55 (73)
Q Consensus 15 ~v~v~~~~TV~~lK~~I~~~~gip~~--~QrLi--f~Gk~L~D~~ 55 (73)
..-|-+ .+..+|+.|..++.+++.. .-+|. -.|..++|++
T Consensus 31 k~GV~A-~SL~EL~~K~~~~l~l~~~~~~~~lvLeeDGT~VddEe 74 (100)
T 1f2r_I 31 QHGVAA-SSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDD 74 (100)
T ss_dssp EEEEEE-SSHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSS
T ss_pred EEeEEc-CCHHHHHHHHHHHhccCCCCCceEEEEeeCCcEEechh
Confidence 444433 4889999999999999863 24553 3688886654
No 342
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2
Probab=26.87 E-value=24 Score=22.30 Aligned_cols=25 Identities=16% Similarity=-0.055 Sum_probs=17.6
Q ss_pred EEcceEecCCccccccCCCCCCEEEEEe
Q psy4181 45 KKWYTIFKDHIRIMDYEIHDGMNLELYY 72 (73)
Q Consensus 45 if~Gk~L~D~~tL~~y~I~~g~ti~L~~ 72 (73)
.++|+.|+-+. .|.+++|++|+|++
T Consensus 73 ~vng~~L~k~~---~~~L~~GD~LeLl~ 97 (143)
T 1yj5_C 73 TVGVHELKPGL---SGSLSLGDVLYLVN 97 (143)
T ss_dssp EETTEECCTTC---EEEECTTCEEESSS
T ss_pred EECCEEecCCC---EEEecCCCEEEEec
Confidence 34677775433 37889999999865
No 343
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=26.87 E-value=85 Score=17.86 Aligned_cols=25 Identities=4% Similarity=0.105 Sum_probs=18.3
Q ss_pred HHHHHHHHHhCCCCccEEEEEcceE
Q psy4181 26 DLKKLIAAQTGTRWEKIVLKKWYTI 50 (73)
Q Consensus 26 ~lK~~I~~~~gip~~~QrLif~Gk~ 50 (73)
.+=+.+++..|+|++.-...|.--.
T Consensus 79 ~i~~~l~~~lgi~~~~v~I~~~e~~ 103 (119)
T 2os5_A 79 KITQFCQDTLKLPKDKVIITYFDLQ 103 (119)
T ss_dssp HHHHHHHHHHCCCGGGEEEEEEECC
T ss_pred HHHHHHHHHhCcCcccEEEEEEECC
Confidence 4444677789999999998875433
No 344
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=26.80 E-value=1.9e+02 Score=21.32 Aligned_cols=47 Identities=4% Similarity=0.028 Sum_probs=33.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCCcc---EEEEEc--c--eEecCCccccc
Q psy4181 13 KVRVKCNPDDTIGDLKKLIAAQTGTRWEK---IVLKKW--Y--TIFKDHIRIMD 59 (73)
Q Consensus 13 ~~~v~v~~~~TV~~lK~~I~~~~gip~~~---QrLif~--G--k~L~D~~tL~~ 59 (73)
...|.++++.||.++=.++.++.||..-. .|+... | .+|.-+.++..
T Consensus 23 ~~~v~~~~~~~~~~i~~~v~~~l~i~~~~~fgL~~~~~~~~~~~wl~~~~~~~~ 76 (656)
T 2j0j_A 23 ASIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLDMGVSN 76 (656)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTTCSCGGGEEEEEEESSSCCEEEECTTSBHHH
T ss_pred eeEEEeCCCCcHHHHHHHHHHhcCcceeeeEEEEEeecccCceeeeCCCCcHHH
Confidence 99999999999999999999999984322 233333 2 24555566555
No 345
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=26.73 E-value=81 Score=18.20 Aligned_cols=29 Identities=3% Similarity=0.069 Sum_probs=20.8
Q ss_pred cHHHHHHHHHHHhCCCCccEEEEEcceEe
Q psy4181 23 TIGDLKKLIAAQTGTRWEKIVLKKWYTIF 51 (73)
Q Consensus 23 TV~~lK~~I~~~~gip~~~QrLif~Gk~L 51 (73)
-++.+=+.+++..|+|++.....|.--.-
T Consensus 76 l~~~i~~~l~~~lgi~~~~v~I~~~e~~~ 104 (125)
T 2wkb_A 76 LADKITKILSNHLSVKPRRVYIEFRDCSA 104 (125)
T ss_dssp HHHHHHHHHHHHHCCCGGGEEEEEEC---
T ss_pred HHHHHHHHHHHHhCcCcceEEEEEEECCH
Confidence 45566667888899999999988765443
No 346
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}
Probab=26.67 E-value=61 Score=17.14 Aligned_cols=22 Identities=32% Similarity=0.314 Sum_probs=18.8
Q ss_pred HHHHhC-CCCccEEEEEcceEec
Q psy4181 31 IAAQTG-TRWEKIVLKKWYTIFK 52 (73)
Q Consensus 31 I~~~~g-ip~~~QrLif~Gk~L~ 52 (73)
-+++.| +.+..+.+-.+|+.+.
T Consensus 35 ~A~~aG~l~~GD~I~~ing~~v~ 57 (92)
T 3cyy_A 35 LAARDGNIQEGDVVLKINGTVTE 57 (92)
T ss_dssp HHHHSCCCCTTCEEEEETTEECT
T ss_pred hHHhcCCCCCCCEEEEECCEECC
Confidence 456679 9999999999999987
No 347
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=26.33 E-value=70 Score=22.04 Aligned_cols=22 Identities=14% Similarity=0.170 Sum_probs=18.7
Q ss_pred EEEEeCCCCcHHHHHHHHHHHh
Q psy4181 14 VRVKCNPDDTIGDLKKLIAAQT 35 (73)
Q Consensus 14 ~~v~v~~~~TV~~lK~~I~~~~ 35 (73)
..+.|.++||.++|.+++.+.+
T Consensus 254 ~~v~I~~~dt~~~L~~r~~~~e 275 (302)
T 3o1l_A 254 DVVRVSHRDSIENMVRFGRDVE 275 (302)
T ss_dssp EEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHH
Confidence 3578899999999999988765
No 348
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=26.26 E-value=1.1e+02 Score=18.33 Aligned_cols=39 Identities=23% Similarity=0.234 Sum_probs=31.2
Q ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceE
Q psy4181 9 RLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTI 50 (73)
Q Consensus 9 ~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~ 50 (73)
.-|+.+.++ .+.+..+...+++..|..++...|.|.|..
T Consensus 95 ~Cg~v~~~~---~~~~~~~~~~~~~~~gf~i~~~~l~~~G~C 133 (150)
T 2w57_A 95 DCGEVIEFS---DDVIEQRQKEIAAKYNVQLTNHSLYLYGKC 133 (150)
T ss_dssp TTCCEEEEC---CHHHHHHHHHHHHHTTCEEEEEEEEEEEEC
T ss_pred CCCCEEEec---ccCHHHHHHHHHHhcCCEEEEEEEEEEEEc
Confidence 357777664 345788888999999999999999998864
No 349
>2idl_A Hypothetical protein; conserved hypothetical, MCSG, PSI2, MAD, structural genomics structure initiative; 1.70A {Streptococcus pneumoniae} SCOP: d.64.2.1
Probab=26.13 E-value=77 Score=18.67 Aligned_cols=19 Identities=16% Similarity=0.170 Sum_probs=15.3
Q ss_pred CEEEEEE-cCCCCEEEEEeC
Q psy4181 1 MIEITCN-DRLGKKVRVKCN 19 (73)
Q Consensus 1 ~~~i~vk-~~~G~~~~v~v~ 19 (73)
||+|.++ +..|+...+++.
T Consensus 4 MI~V~i~~~~~~~i~~f~v~ 23 (117)
T 2idl_A 4 MIQAVFERAEDGELRSAEIT 23 (117)
T ss_dssp CEEEEEEECTTSCEEEEEEE
T ss_pred CEEEEEEECCCCCEEEEEEE
Confidence 8999994 478888888875
No 350
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=26.10 E-value=37 Score=17.52 Aligned_cols=19 Identities=11% Similarity=0.199 Sum_probs=13.9
Q ss_pred CCCcHHHHHHHHHHHhCCCC
Q psy4181 20 PDDTIGDLKKLIAAQTGTRW 39 (73)
Q Consensus 20 ~~~TV~~lK~~I~~~~gip~ 39 (73)
...||.+||+.+..+ |.|.
T Consensus 11 ~klkV~eLK~eLk~R-gL~~ 29 (50)
T 1zrj_A 11 RRLKVNELREELQRR-GLDT 29 (50)
T ss_dssp GGSCHHHHHHHHHHT-TCCC
T ss_pred HHCcHHHHHHHHHHc-CCCC
Confidence 368999999977665 4554
No 351
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=25.95 E-value=92 Score=17.46 Aligned_cols=25 Identities=12% Similarity=0.147 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhCCCCccEEEEEcc
Q psy4181 24 IGDLKKLIAAQTGTRWEKIVLKKWY 48 (73)
Q Consensus 24 V~~lK~~I~~~~gip~~~QrLif~G 48 (73)
++.+=+.+++..|+|++...+.|.-
T Consensus 77 ~~~i~~~l~~~lgi~~~~v~I~~~e 101 (112)
T 3b64_A 77 TSIVTAAITKECGIVADRIFVLYFS 101 (112)
T ss_dssp HHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred HHHHHHHHHHHhCcCcceEEEEEEE
Confidence 4455567788899999999887754
No 352
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=25.93 E-value=72 Score=21.79 Aligned_cols=22 Identities=9% Similarity=-0.079 Sum_probs=18.8
Q ss_pred EEEEeCCCCcHHHHHHHHHHHh
Q psy4181 14 VRVKCNPDDTIGDLKKLIAAQT 35 (73)
Q Consensus 14 ~~v~v~~~~TV~~lK~~I~~~~ 35 (73)
..+.|+++||.++|.+++.+.+
T Consensus 244 ~~v~i~~~dt~~~L~~r~~~~e 265 (292)
T 3lou_A 244 VVERVDHSYRPEQLLAVGRDVE 265 (292)
T ss_dssp EEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 3578899999999999988765
No 353
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=25.92 E-value=37 Score=17.57 Aligned_cols=19 Identities=21% Similarity=0.223 Sum_probs=13.8
Q ss_pred CCCcHHHHHHHHHHHhCCCC
Q psy4181 20 PDDTIGDLKKLIAAQTGTRW 39 (73)
Q Consensus 20 ~~~TV~~lK~~I~~~~gip~ 39 (73)
...||.+||+.+..+ |+|.
T Consensus 6 ~kltV~eLK~~Lk~R-GL~~ 24 (51)
T 1h1j_S 6 SSLTVVQLKDLLTKR-NLSV 24 (51)
T ss_dssp GGCCHHHHHHHHHHT-TCCC
T ss_pred HHCcHHHHHHHHHHc-CCCC
Confidence 467999999876654 5664
No 354
>2p92_A Hypothetical protein; unknown function; HET: MSE; 1.73A {Staphylococcus aureus} SCOP: d.64.2.1
Probab=25.68 E-value=77 Score=19.15 Aligned_cols=19 Identities=26% Similarity=0.308 Sum_probs=15.4
Q ss_pred CEEEEE-EcCCCCEEEEEeC
Q psy4181 1 MIEITC-NDRLGKKVRVKCN 19 (73)
Q Consensus 1 ~~~i~v-k~~~G~~~~v~v~ 19 (73)
||+|.+ |+.+|+...+++.
T Consensus 21 MI~V~i~~~~~g~i~~f~v~ 40 (126)
T 2p92_A 21 MITVDITVNDEGKVTDVIMD 40 (126)
T ss_dssp CEEEEEEECTTSCEEEEEEE
T ss_pred cEEEEEEECCCCCEEEEEEE
Confidence 899999 5678888888775
No 355
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=25.60 E-value=53 Score=20.65 Aligned_cols=58 Identities=14% Similarity=0.106 Sum_probs=37.4
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhC-CCCcc----EEEEE-----------------cceEe-cCCccccccCCCCCCEEEE
Q psy4181 14 VRVKCNPDDTIGDLKKLIAAQTG-TRWEK----IVLKK-----------------WYTIF-KDHIRIMDYEIHDGMNLEL 70 (73)
Q Consensus 14 ~~v~v~~~~TV~~lK~~I~~~~g-ip~~~----QrLif-----------------~Gk~L-~D~~tL~~y~I~~g~ti~L 70 (73)
+.+-.=.++|..+|=..|.+..- .+.-. -+++| .|+.- +|..||++.+.+-|+-|.+
T Consensus 56 lQIYTW~daTLrEL~~Lvk~~~p~ar~~gtrl~F~~VypD~r~~ry~~kdlGsv~~g~~~~dd~kTL~~~rF~iGDyidv 135 (143)
T 4a6q_A 56 LQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYLDI 135 (143)
T ss_dssp EEEEECTTCBHHHHHHHHHHHCGGGGSTTCEEEEEEEEECSSSSSEEEEEEEEEETTBCCTTTTCBTGGGTCCTTCEEEE
T ss_pred eEEeeCCCCCHHHHHHHHHHhCccccCCCCEEEEEEEcccCCCCceeeccCCEEecCCCCCcccccHHHCCCcCCCEEEE
Confidence 44555679999999888877631 11111 13333 22222 4789999999999998876
Q ss_pred E
Q psy4181 71 Y 71 (73)
Q Consensus 71 ~ 71 (73)
+
T Consensus 136 a 136 (143)
T 4a6q_A 136 A 136 (143)
T ss_dssp E
T ss_pred E
Confidence 5
No 356
>3chb_D Cholera toxin; toxin/receptor complex, pentasaccharide; HET: GAL NGA SIA BGC MES; 1.25A {Vibrio cholerae} SCOP: b.40.2.1 PDB: 2chb_D* 1jr0_D* 1fgb_D 1eei_D* 1llr_D* 1md2_D* 1pzj_D* 1pzk_D* 1rcv_D* 1rd9_D* 1rdp_D* 1rf2_D* 1s5b_D 1s5c_D 1s5d_D* 1s5e_D* 1s5f_D* 1chp_D 1chq_D 1ct1_D* ...
Probab=25.50 E-value=1.1e+02 Score=17.91 Aligned_cols=39 Identities=23% Similarity=0.239 Sum_probs=26.4
Q ss_pred EEEcCCCCEEEEEeCCCCcHHHHHHHHHHH---------hCCCCccEE
Q psy4181 5 TCNDRLGKKVRVKCNPDDTIGDLKKLIAAQ---------TGTRWEKIV 43 (73)
Q Consensus 5 ~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~---------~gip~~~Qr 43 (73)
.+-..+|-++.|+|.-+.-+..-|.-|+.. .|+-++..+
T Consensus 40 iisf~ngatfqvevpgsqh~~sqk~~~ermkdtlr~ay~t~~ki~klc 87 (104)
T 3chb_D 40 IITFKNGATFQVEVPGSQHIDSQKKAIERMKDTLRIAYLTEAKVEKLC 87 (104)
T ss_dssp EEECTTCCEEEECCCCTTSCHHHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred EEEecCCcEEEEecCcchhhhhhhhHHHHHHHHHHHHHHhccchhhee
Confidence 344557999999999888777666555432 466555544
No 357
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=25.41 E-value=75 Score=21.61 Aligned_cols=22 Identities=9% Similarity=-0.231 Sum_probs=18.8
Q ss_pred EEEEeCCCCcHHHHHHHHHHHh
Q psy4181 14 VRVKCNPDDTIGDLKKLIAAQT 35 (73)
Q Consensus 14 ~~v~v~~~~TV~~lK~~I~~~~ 35 (73)
..+.|+++||..+|.+++.+.+
T Consensus 239 ~~~~i~~~dt~~~L~~r~~~~e 260 (286)
T 3n0v_A 239 GVEVVDHSHYPEDLIAKGRDIE 260 (286)
T ss_dssp EEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 3578899999999999988775
No 358
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=25.18 E-value=76 Score=21.58 Aligned_cols=22 Identities=14% Similarity=-0.026 Sum_probs=18.7
Q ss_pred EEEEeCCCCcHHHHHHHHHHHh
Q psy4181 14 VRVKCNPDDTIGDLKKLIAAQT 35 (73)
Q Consensus 14 ~~v~v~~~~TV~~lK~~I~~~~ 35 (73)
..+.|.++||.++|.+++.+.+
T Consensus 238 ~~v~i~~~dt~~~L~~r~~~~e 259 (287)
T 3nrb_A 238 DVEHVSHRDSAEDLVRKGRDIE 259 (287)
T ss_dssp EEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHH
Confidence 3578899999999999988765
No 359
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*
Probab=25.04 E-value=21 Score=25.79 Aligned_cols=57 Identities=7% Similarity=0.170 Sum_probs=27.6
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhC--CCCcc--------EEEEEcce--EecC------CccccccCCCCCCEEEE
Q psy4181 14 VRVKCNPDDTIGDLKKLIAAQTG--TRWEK--------IVLKKWYT--IFKD------HIRIMDYEIHDGMNLEL 70 (73)
Q Consensus 14 ~~v~v~~~~TV~~lK~~I~~~~g--ip~~~--------QrLif~Gk--~L~D------~~tL~~y~I~~g~ti~L 70 (73)
..+.++++.|..++-+.+..+.+ +.... .+++|... .|++ ..+|.+.|+.+|+.|.+
T Consensus 343 ~~~~~~~~~tl~~~~~~l~~~~~~~~~~~~is~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~g~~~~v 417 (434)
T 1tt5_B 343 QNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAV 417 (434)
T ss_dssp BCCCC-----CTTHHHHHHHCSSCCCSSCCCEET----TEECCCCCCTTTTTTSCC-CCC-----CCCSSCCEEC
T ss_pred ceEEECCCccHHHHHHHHhccCccceEccEEEEEccCCCcEEEecCCcchhhhhHhhhcCCHHHcCCCCCCEEEE
Confidence 34566677777777788888643 32211 35566432 2222 56899999999998764
No 360
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=24.94 E-value=8.9 Score=21.40 Aligned_cols=32 Identities=13% Similarity=0.136 Sum_probs=22.9
Q ss_pred cEEEEEcceEecCCccc-cccCCCCCCEEEEEe
Q psy4181 41 KIVLKKWYTIFKDHIRI-MDYEIHDGMNLELYY 72 (73)
Q Consensus 41 ~QrLif~Gk~L~D~~tL-~~y~I~~g~ti~L~~ 72 (73)
-++||-+|+.+-|+... ..+.++.|+.|.+.+
T Consensus 19 ~~~li~~G~V~VNg~~~~~~~~v~~gd~I~v~~ 51 (92)
T 2k6p_A 19 ATDMCNVGAVWLNGSCAKASKEVKAGDTISLHY 51 (92)
T ss_dssp SCCHHHHTCCEETTEECCTTCBCCTTCEEEECC
T ss_pred HHHHHHCCcEEECCEEcCCCCCcCCCCEEEEEe
Confidence 56777788877666543 467799999887743
No 361
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=24.75 E-value=79 Score=21.53 Aligned_cols=22 Identities=18% Similarity=-0.003 Sum_probs=18.7
Q ss_pred EEEEeCCCCcHHHHHHHHHHHh
Q psy4181 14 VRVKCNPDDTIGDLKKLIAAQT 35 (73)
Q Consensus 14 ~~v~v~~~~TV~~lK~~I~~~~ 35 (73)
..+.|.++||.++|.+++.+.+
T Consensus 239 ~~v~i~~~dt~~~L~~r~~~~e 260 (288)
T 3obi_A 239 DVERISHRDTPADLVRKGRDIE 260 (288)
T ss_dssp EEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHH
Confidence 3578899999999999988765
No 362
>3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica}
Probab=24.65 E-value=49 Score=22.26 Aligned_cols=23 Identities=17% Similarity=0.088 Sum_probs=17.3
Q ss_pred EEEcCCCCEEEEEeCCCCcHHHHHHHHH
Q psy4181 5 TCNDRLGKKVRVKCNPDDTIGDLKKLIA 32 (73)
Q Consensus 5 ~vk~~~G~~~~v~v~~~~TV~~lK~~I~ 32 (73)
||||+||.. ....|+.+++.+-+
T Consensus 173 fVKTSTGf~-----~ggAt~~dv~lmr~ 195 (239)
T 3ngj_A 173 YVKTSTGFG-----THGATPEDVKLMKD 195 (239)
T ss_dssp EEECCCSSS-----SCCCCHHHHHHHHH
T ss_pred EEECCCCCC-----CCCCCHHHHHHHHH
Confidence 899999963 35788888876544
No 363
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Probab=24.63 E-value=75 Score=16.88 Aligned_cols=42 Identities=14% Similarity=-0.015 Sum_probs=27.3
Q ss_pred HHHHhC-CCCccEEEEEcceEecCCc--cccccCCCCCCEEEEEe
Q psy4181 31 IAAQTG-TRWEKIVLKKWYTIFKDHI--RIMDYEIHDGMNLELYY 72 (73)
Q Consensus 31 I~~~~g-ip~~~QrLif~Gk~L~D~~--tL~~y~I~~g~ti~L~~ 72 (73)
-+++.| +.+..+.+-.+|+.+.+.. .+...--..+.++.|.+
T Consensus 45 pA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v 89 (94)
T 2fe5_A 45 AAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKV 89 (94)
T ss_dssp HHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTCCSEEEEEE
T ss_pred hHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEE
Confidence 456679 9999999999999997642 22111112455666654
No 364
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=24.59 E-value=80 Score=20.02 Aligned_cols=33 Identities=6% Similarity=0.016 Sum_probs=29.8
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEE
Q psy4181 12 KKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVL 44 (73)
Q Consensus 12 ~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrL 44 (73)
+++++.|++..|=-++|+-++..+|+.+..-+-
T Consensus 90 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNT 122 (152)
T 3iz5_X 90 NTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNT 122 (152)
T ss_dssp SEEEEEECSSCCSHHHHHHHHHHHTCCEEEEEE
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCcceEEEe
Confidence 688899999999999999999999999987644
No 365
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}
Probab=24.53 E-value=31 Score=19.38 Aligned_cols=39 Identities=15% Similarity=0.084 Sum_probs=24.2
Q ss_pred HHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEEE
Q psy4181 32 AAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY 71 (73)
Q Consensus 32 ~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L~ 71 (73)
+++.|+.+....+-.+|+.+.+...+..+ +..|..+.|.
T Consensus 48 A~~aGl~~GD~I~~ing~~v~~~~~~~~~-l~~g~~v~l~ 86 (112)
T 2p3w_A 48 SQRGGIQDGDIIVKVNGRPLVDSSELQEA-VLTESPLLLE 86 (112)
T ss_dssp HHHHTCCTTCEEEEETTEECCSHHHHHHH-HHHCSSEEEE
T ss_pred HHHCCCCCCCEEEEECCEECCCHHHHHHH-HhCCCeEEEE
Confidence 44568888888888888888765444322 2345544443
No 366
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=24.52 E-value=1.2e+02 Score=19.41 Aligned_cols=21 Identities=14% Similarity=0.069 Sum_probs=16.7
Q ss_pred CEEEEEeCCCCcHHHHHHHHH
Q psy4181 12 KKVRVKCNPDDTIGDLKKLIA 32 (73)
Q Consensus 12 ~~~~v~v~~~~TV~~lK~~I~ 32 (73)
+.+.+++++..||.++=..+-
T Consensus 24 ~~~~~~~~~~~tll~al~~~~ 44 (243)
T 1kf6_B 24 AFYEVPYDATTSLLDALGYIK 44 (243)
T ss_dssp EEEEEEECTTCBHHHHHHHHH
T ss_pred EEEEEecCCCChHHHHHHHcC
Confidence 467888999999998766654
No 367
>3f5r_A FACT complex subunit POB3; APC7736, FACT complex (SPT16P-POB3P), saccharomyces cerevisi structural genomics, PSI-2; 1.70A {Saccharomyces cerevisiae}
Probab=24.31 E-value=1.5e+02 Score=19.32 Aligned_cols=42 Identities=10% Similarity=0.058 Sum_probs=34.2
Q ss_pred EEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEE
Q psy4181 3 EITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVL 44 (73)
Q Consensus 3 ~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrL 44 (73)
++-|.+.+|..+.++=-..+-...||+-+....++++++--|
T Consensus 86 ~LrI~~K~g~~~~fdGF~~~D~~~L~~~fk~~f~i~Le~kEl 127 (191)
T 3f5r_A 86 DLKINTKNQGVIQLDGFSQDDYNLIKNDFHRRFNIQVEQREH 127 (191)
T ss_dssp EEEEEESSSCEEEEEEECGGGHHHHHHHHHHHHCCCCEECSS
T ss_pred EEEEEECCCceEEecCCCHHHHHHHHHHHHHHcCCCceeeee
Confidence 566666789999998777778999999999999999876443
No 368
>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A {Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A* 3l4p_A*
Probab=24.25 E-value=82 Score=24.88 Aligned_cols=56 Identities=9% Similarity=0.058 Sum_probs=33.9
Q ss_pred CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHH----hCCCCcc---EEEEEcceEecCCccc
Q psy4181 1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQ----TGTRWEK---IVLKKWYTIFKDHIRI 57 (73)
Q Consensus 1 ~~~i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~~----~gip~~~---QrLif~Gk~L~D~~tL 57 (73)
|+.|.++ ++|+.+.++++|+.|+.++=...... .|..... .-.+.+|+...-+.++
T Consensus 1 ~~~~~~~-~ng~~~~~~~~~~~~ll~~Lr~~~~l~g~k~gC~~g~CGaCtv~vdg~~~~sC~~~ 63 (907)
T 1vlb_A 1 MIQKVIT-VNGIEQNLFVDAEALLSDVLRQQLGLTGVKVGCEQGQCGACSVILDGKVVRACVTK 63 (907)
T ss_dssp CEEEEEE-ETTEEEEEEECTTSBHHHHHHHTTCCTTSCCSSSSSSSCTTEEEETTEEEEGGGCB
T ss_pred CceEEEE-ECCEEEEEecCCCChHHHHHHHhcCCCeecCCCCCCCcCccEEEECCeEeechHhH
Confidence 5556655 49999999999999999775543222 2222222 2344477765544443
No 369
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}
Probab=24.23 E-value=88 Score=16.52 Aligned_cols=42 Identities=14% Similarity=0.094 Sum_probs=28.1
Q ss_pred HHHHhC-CCCccEEEEEcceEecCCccccccC--CCCCCEEEEEe
Q psy4181 31 IAAQTG-TRWEKIVLKKWYTIFKDHIRIMDYE--IHDGMNLELYY 72 (73)
Q Consensus 31 I~~~~g-ip~~~QrLif~Gk~L~D~~tL~~y~--I~~g~ti~L~~ 72 (73)
-+++.| +.+..+.+-.+|+.+.+....+-.. -..|.++.|.+
T Consensus 45 ~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v 89 (97)
T 2iwn_A 45 AVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTL 89 (97)
T ss_dssp HHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHTCCSEEEEEE
T ss_pred hHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEE
Confidence 456679 9999999999999998643221111 12677777654
No 370
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=24.20 E-value=1.1e+02 Score=19.31 Aligned_cols=33 Identities=12% Similarity=0.305 Sum_probs=24.7
Q ss_pred CEEEEEe----CCCCcHHHHHHHHHHHhCCCCccEEE
Q psy4181 12 KKVRVKC----NPDDTIGDLKKLIAAQTGTRWEKIVL 44 (73)
Q Consensus 12 ~~~~v~v----~~~~TV~~lK~~I~~~~gip~~~QrL 44 (73)
+.+.++| .++-+-.+++++|++..+.+++...+
T Consensus 19 kE~v~dV~Hpg~aTpSk~eIrekLAkmy~~~~d~VvV 55 (149)
T 2xzm_P 19 RQLSLDVLHPDSPTASKEKIREELAKQLKVDARNVVV 55 (149)
T ss_dssp EEEEEEEECSSSCSCCHHHHHHHHHHHHTCCGGGEEE
T ss_pred EEEEEEEEeCCCCCCCHHHHHHHHHHHHCCCCCEEEE
Confidence 4455554 25777889999999999998776554
No 371
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=24.15 E-value=44 Score=18.84 Aligned_cols=30 Identities=20% Similarity=0.238 Sum_probs=22.0
Q ss_pred EEEEcCCCCEEEEEeCCCCcHHHHHHHHHH
Q psy4181 4 ITCNDRLGKKVRVKCNPDDTIGDLKKLIAA 33 (73)
Q Consensus 4 i~vk~~~G~~~~v~v~~~~TV~~lK~~I~~ 33 (73)
|.+++.+|..+.++-..-.--.-+|.++++
T Consensus 3 v~L~SsDg~~f~V~~~~A~~S~~ik~ml~~ 32 (96)
T 2fnj_C 3 VKLISSDGHEFIVKREHALTSGTIKAMLSG 32 (96)
T ss_dssp EEEECTTSCEEEEEHHHHTTSHHHHHHHHC
T ss_pred EEEEecCCCEEEeCHHHHHHhHHHHHHHHc
Confidence 778899999999976543334567777775
No 372
>1yb3_A Hypothetical protein; structural genomics, protein structure initiative, PSI; 1.60A {Pyrococcus furiosus} SCOP: d.296.1.2
Probab=23.99 E-value=58 Score=21.16 Aligned_cols=29 Identities=7% Similarity=-0.009 Sum_probs=24.2
Q ss_pred EEcCCCCEEEEEeCCCCcHHHHHHHHHHH
Q psy4181 6 CNDRLGKKVRVKCNPDDTIGDLKKLIAAQ 34 (73)
Q Consensus 6 vk~~~G~~~~v~v~~~~TV~~lK~~I~~~ 34 (73)
|+.++.+.+.++++-.-++.+||..+..-
T Consensus 137 I~~S~Ee~i~fe~~~~~~~e~l~~~l~~~ 165 (175)
T 1yb3_A 137 IVNSDEEMINFEVDLGFDKEEVKREIKRF 165 (175)
T ss_dssp HHTSSCSEEEEEEECTTCHHHHHHHHHHH
T ss_pred HhcCccceEEEEeecCCCHHHHHHHHHHH
Confidence 34568899999999999999999987653
No 373
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=23.90 E-value=34 Score=19.31 Aligned_cols=26 Identities=15% Similarity=0.143 Sum_probs=19.4
Q ss_pred EEEEEcCCCCEEEEEeCCCCcHHHHH
Q psy4181 3 EITCNDRLGKKVRVKCNPDDTIGDLK 28 (73)
Q Consensus 3 ~i~vk~~~G~~~~v~v~~~~TV~~lK 28 (73)
.+.||+.+|..+-+.|.+.--...||
T Consensus 32 ~~iVkss~g~~~~V~v~~~Vd~~~Lk 57 (85)
T 3h43_A 32 KVVVKSSTGPSFLVNVSHFVNPDDLA 57 (85)
T ss_dssp EEEEEETTSSEEEEEBCTTSCGGGCC
T ss_pred EEEEEeCCCCeEEEEecCccCHHHCC
Confidence 36789889999999998865444443
No 374
>1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} SCOP: a.28.1.1 PDB: 2x2b_A* 1hy8_A
Probab=23.77 E-value=55 Score=16.97 Aligned_cols=19 Identities=26% Similarity=0.401 Sum_probs=13.3
Q ss_pred CcHHHHHHHHHHHhCCCCc
Q psy4181 22 DTIGDLKKLIAAQTGTRWE 40 (73)
Q Consensus 22 ~TV~~lK~~I~~~~gip~~ 40 (73)
+....+++.+++..|+|++
T Consensus 7 ~i~~~l~~~l~~~l~~~~~ 25 (81)
T 1f80_D 7 DTLERVTKIIVDRLGVDEA 25 (81)
T ss_dssp HHHHHHHHHHHHHSSCCSS
T ss_pred HHHHHHHHHHHHHHCCCHH
Confidence 3455677778888887765
No 375
>3kan_A D-dopachrome tautomerase; immune response, cytokine, cytokine-inhibitor C; HET: RW1; 1.13A {Homo sapiens} SCOP: d.80.1.3 PDB: 1dpt_A* 3ker_A*
Probab=23.73 E-value=1e+02 Score=17.71 Aligned_cols=24 Identities=4% Similarity=0.218 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhCCCCccEEEEEcc
Q psy4181 25 GDLKKLIAAQTGTRWEKIVLKKWY 48 (73)
Q Consensus 25 ~~lK~~I~~~~gip~~~QrLif~G 48 (73)
+.+=+-+++..|||+++..+.|.-
T Consensus 78 ~~i~~~l~~~Lgi~~~RiyI~f~d 101 (117)
T 3kan_A 78 AHFFEFLTKELALGQDRILIRFFP 101 (117)
T ss_dssp HHHHHHHHHHHTCCGGGEEEEEEE
T ss_pred HHHHHHHHHHhCcCcCeEEEEEEE
Confidence 345556778899999999998854
No 376
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=23.66 E-value=54 Score=17.70 Aligned_cols=23 Identities=13% Similarity=-0.029 Sum_probs=19.8
Q ss_pred HHHhCCCCccEEEEEcceEecCC
Q psy4181 32 AAQTGTRWEKIVLKKWYTIFKDH 54 (73)
Q Consensus 32 ~~~~gip~~~QrLif~Gk~L~D~ 54 (73)
+++.|+.+....+-.+|+.+.+.
T Consensus 43 A~~aGL~~GD~I~~ing~~v~~~ 65 (94)
T 1vb7_A 43 AEAADLRPGDIIVAINGQSAENM 65 (94)
T ss_dssp HHHHTCCTTCEEEEETTEECTTC
T ss_pred HHHCCCCCCCEEEEECCEECCCC
Confidence 56789999999999999999774
No 377
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=23.65 E-value=60 Score=17.01 Aligned_cols=19 Identities=21% Similarity=0.169 Sum_probs=14.0
Q ss_pred CCCcHHHHHHHHHHHhCCCC
Q psy4181 20 PDDTIGDLKKLIAAQTGTRW 39 (73)
Q Consensus 20 ~~~TV~~lK~~I~~~~gip~ 39 (73)
...||.+||+.+.. .|.|.
T Consensus 11 ~klkV~eLK~~L~~-rGL~~ 29 (55)
T 2do1_A 11 HKLKLAELKQECLA-RGLET 29 (55)
T ss_dssp TTSCHHHHHHHHHH-HTCCC
T ss_pred HHCcHHHHHHHHHH-cCCCC
Confidence 47899999986554 56665
No 378
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Probab=23.42 E-value=92 Score=17.43 Aligned_cols=42 Identities=12% Similarity=0.005 Sum_probs=29.0
Q ss_pred HHHHhC-CCCccEEEEEcceEecCCccccccC--CCCCCEEEEEe
Q psy4181 31 IAAQTG-TRWEKIVLKKWYTIFKDHIRIMDYE--IHDGMNLELYY 72 (73)
Q Consensus 31 I~~~~g-ip~~~QrLif~Gk~L~D~~tL~~y~--I~~g~ti~L~~ 72 (73)
-+++.| +.+..+.+-.+|+.+.+...+.... -..|.++.|.+
T Consensus 50 pA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v 94 (119)
T 1tp5_A 50 PADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIA 94 (119)
T ss_dssp HHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCSEEEEEE
T ss_pred HHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEE
Confidence 466679 9999999999999997754322211 23577776654
No 379
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=23.36 E-value=58 Score=18.48 Aligned_cols=43 Identities=16% Similarity=-0.054 Sum_probs=28.2
Q ss_pred HHHHHhC-CCCccEEEEEcceEecCC--ccccccCCCCCCEEEEEe
Q psy4181 30 LIAAQTG-TRWEKIVLKKWYTIFKDH--IRIMDYEIHDGMNLELYY 72 (73)
Q Consensus 30 ~I~~~~g-ip~~~QrLif~Gk~L~D~--~tL~~y~I~~g~ti~L~~ 72 (73)
--+++.| +.+..+.|-.+|..+.+. ..+..+=-..+..|.|.+
T Consensus 60 s~A~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~~v~l~v 105 (117)
T 1ujd_A 60 GSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICV 105 (117)
T ss_dssp CHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHSCCSSCEEEEE
T ss_pred CHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCEEEEEE
Confidence 4567789 999999999999999763 222222123456666543
No 380
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=23.35 E-value=63 Score=21.62 Aligned_cols=25 Identities=16% Similarity=-0.008 Sum_probs=13.5
Q ss_pred HHhCCCCccEEEEEcceEecCCccc
Q psy4181 33 AQTGTRWEKIVLKKWYTIFKDHIRI 57 (73)
Q Consensus 33 ~~~gip~~~QrLif~Gk~L~D~~tL 57 (73)
++.|+.+....+-.+|+.+.+...|
T Consensus 256 ~~aGl~~GD~I~~ing~~v~~~~~l 280 (324)
T 1y8t_A 256 ANAGVPKGVVVTKVDDRPINSADAL 280 (324)
T ss_dssp TTTTCCTTCEEEEETTEECCSHHHH
T ss_pred HHcCCCCCCEEEEECCEECCCHHHH
Confidence 3445555566665566665554433
No 381
>3ge3_E Toluene-4-monooxygenase system protein D; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.137.1.1 PDB: 3dhh_E* 3dhi_E 3ge8_E 3i5j_E 3i63_E 3q14_E 3q2a_E* 3q3m_E* 3q3n_E* 3q3o_E* 1g10_A 1g11_A 2bf2_A 3ri7_E 2bf5_A 2bf3_A* 2bf3_B*
Probab=23.34 E-value=35 Score=20.24 Aligned_cols=30 Identities=23% Similarity=0.164 Sum_probs=22.7
Q ss_pred HHHHHHHhCCCCccEEE-----EEcceEecCCccc
Q psy4181 28 KKLIAAQTGTRWEKIVL-----KKWYTIFKDHIRI 57 (73)
Q Consensus 28 K~~I~~~~gip~~~QrL-----if~Gk~L~D~~tL 57 (73)
++.|++..|-|.+-|.| -|.|+.-.|++.+
T Consensus 61 r~tieE~LGr~~~~~elev~mss~~Gri~~~DD~~ 95 (103)
T 3ge3_E 61 RKTLEEQLGRPFNMQELEINLASFAGQIQADEDQI 95 (103)
T ss_dssp HHHHHHHHTSCCCGGGGGGTEEEEESEEEECSSEE
T ss_pred HHHHHHHhCCCCcHHHhhhhhheeeeEEEeeCCEE
Confidence 46789999999988854 6788887665543
No 382
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=23.26 E-value=42 Score=17.79 Aligned_cols=22 Identities=14% Similarity=-0.034 Sum_probs=19.5
Q ss_pred HHHhCCCCccEEEEEcceEecC
Q psy4181 32 AAQTGTRWEKIVLKKWYTIFKD 53 (73)
Q Consensus 32 ~~~~gip~~~QrLif~Gk~L~D 53 (73)
+++.|+.+....+-.+|+.+.+
T Consensus 39 A~~aGL~~GD~I~~ing~~v~~ 60 (87)
T 2pa1_A 39 AKDADLRPGDIIVAINGESAEG 60 (87)
T ss_dssp HHHTTCCTTCEEEEETTEESTT
T ss_pred HHHcCCCCCCEEEEECCEECCC
Confidence 5678999999999999999977
No 383
>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major}
Probab=23.24 E-value=1e+02 Score=18.27 Aligned_cols=24 Identities=13% Similarity=0.162 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhCCCCccEEEEEcc
Q psy4181 25 GDLKKLIAAQTGTRWEKIVLKKWY 48 (73)
Q Consensus 25 ~~lK~~I~~~~gip~~~QrLif~G 48 (73)
+.+=+.+++..|||+++..+.|.-
T Consensus 99 ~~i~~~l~~~LgI~~~riyI~f~d 122 (133)
T 3fwu_A 99 SIVTAAITKECGIVADRIFVLYFS 122 (133)
T ss_dssp HHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred HHHHHHHHHHhCcChhhEEEEEEE
Confidence 455566788899999999987754
No 384
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=23.09 E-value=59 Score=18.99 Aligned_cols=31 Identities=23% Similarity=0.302 Sum_probs=23.2
Q ss_pred CEEEEEe-C---CCCcHHHHHHHHHHHhCCCCccE
Q psy4181 12 KKVRVKC-N---PDDTIGDLKKLIAAQTGTRWEKI 42 (73)
Q Consensus 12 ~~~~v~v-~---~~~TV~~lK~~I~~~~gip~~~Q 42 (73)
+.+.++| . ++-+-.+++++|++..+.+++.-
T Consensus 17 ke~~~~v~hp~~~tpsk~eirekLA~~~~~~~~~v 51 (98)
T 2g1d_A 17 KEIKYVLKFDSSRTPSREEIKELIAKHEGVDKELV 51 (98)
T ss_dssp EEEEEEEECCTTSCCCHHHHHHHHHHHHHSCSTTE
T ss_pred EEEEEEEEeCCCCCCCHHHHHHHHHHHHCCCCCEE
Confidence 4455554 2 56678899999999999988744
No 385
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A
Probab=23.08 E-value=35 Score=18.44 Aligned_cols=40 Identities=10% Similarity=-0.143 Sum_probs=26.7
Q ss_pred HHHhCCCCccEEEEEcceEecCCcccc--ccCCCCCCEEEEEe
Q psy4181 32 AAQTGTRWEKIVLKKWYTIFKDHIRIM--DYEIHDGMNLELYY 72 (73)
Q Consensus 32 ~~~~gip~~~QrLif~Gk~L~D~~tL~--~y~I~~g~ti~L~~ 72 (73)
+++ |+.+....+-.+|+.+.+....+ .+--..|..+.|.+
T Consensus 48 A~~-gL~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v 89 (95)
T 1mfg_A 48 ASK-LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELII 89 (95)
T ss_dssp TTT-TCCTTCEEEEETTEECTTCBHHHHHHHHHHCCSEEEEEE
T ss_pred hhh-CCCCCCEEEEECCEEcCCCCHHHHHHHhhcCCCeEEEEE
Confidence 356 99999999999999997633222 11124577777654
No 386
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.06 E-value=57 Score=17.60 Aligned_cols=24 Identities=8% Similarity=-0.283 Sum_probs=20.7
Q ss_pred HHHHhCCCCccEEEEEcceEecCC
Q psy4181 31 IAAQTGTRWEKIVLKKWYTIFKDH 54 (73)
Q Consensus 31 I~~~~gip~~~QrLif~Gk~L~D~ 54 (73)
-+++.|+.+....+-.+|+.+.+.
T Consensus 44 pA~~aGl~~GD~I~~ing~~v~~~ 67 (94)
T 2eeg_A 44 KAALAALCPGDLIQAINGESTELM 67 (94)
T ss_dssp HHHHTTCCTTCEEEEETTEETTTC
T ss_pred HHHHcCCCCCCEEEEECCEECCCC
Confidence 566789999999999999999864
No 387
>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major}
Probab=22.96 E-value=1.1e+02 Score=18.18 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhCCCCccEEEEEcc
Q psy4181 25 GDLKKLIAAQTGTRWEKIVLKKWY 48 (73)
Q Consensus 25 ~~lK~~I~~~~gip~~~QrLif~G 48 (73)
+.+=+-+++..|||++...+.|.-
T Consensus 99 ~~i~~~l~~~LgI~~~rvyI~f~d 122 (133)
T 3fwt_A 99 PRIAAAITKECGIPAERIYVFYYS 122 (133)
T ss_dssp HHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHhCcChhhEEEEEEE
Confidence 455556778899999999887754
No 388
>2w82_A ORF18, ARDA; DNA mimic, replication inhibitor; 2.80A {Enterococcus faecalis}
Probab=22.91 E-value=1.2e+02 Score=18.73 Aligned_cols=44 Identities=11% Similarity=-0.050 Sum_probs=31.2
Q ss_pred EEEEEEcC----CCCEEEEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcce
Q psy4181 2 IEITCNDR----LGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYT 49 (73)
Q Consensus 2 ~~i~vk~~----~G~~~~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk 49 (73)
++|+|=++ .|..+--.++...|..+++++ .|++.+.+-+.+..-
T Consensus 4 ~~iyV~~l~~Yn~G~l~G~W~~lp~d~eei~e~----ig~~~~~eE~~I~Dy 51 (165)
T 2w82_A 4 MQVYIANLGKYNEGELVGAWFTFPIDFEEVKEK----IGLNDEYEEYAIHDY 51 (165)
T ss_dssp CEEEEEEEEEESSSSEEEEEEESSCCHHHHHHH----HTCCTTCCSEEEEEE
T ss_pred ceeeeecHHHhcCCceeeEEEeCCCCHHHHHHH----hCCCCccceeEEeec
Confidence 78888776 688888888877888888654 677766555544433
No 389
>1ibx_B Chimera of IGG binding protein G and DNA fragmentation factor 45; DFF40, DFF45, protein-protein complex, CIDE, CIDE domain complex; HET: DNA; NMR {Streptococcus SP} SCOP: d.15.2.1
Probab=22.33 E-value=43 Score=21.20 Aligned_cols=34 Identities=18% Similarity=0.092 Sum_probs=25.0
Q ss_pred CcHHHHHHHHHHHhCCCCc--cEEEE--EcceEecCCc
Q psy4181 22 DTIGDLKKLIAAQTGTRWE--KIVLK--KWYTIFKDHI 55 (73)
Q Consensus 22 ~TV~~lK~~I~~~~gip~~--~QrLi--f~Gk~L~D~~ 55 (73)
.+..+|+.|..++.++|.. .-+|. -.|..++|++
T Consensus 82 ~SL~EL~~K~~~kL~l~~~~~~~~LvLeeDGTeVddEe 119 (145)
T 1ibx_B 82 SCLEDLRSKACDILAIDKSLTPVTLVLAEDGTIVDDDD 119 (145)
T ss_dssp SSHHHHHHHHHHHHTCSCTTSCCEEEETTTCCBCSSHH
T ss_pred CCHHHHHHHHHHHhcCCCCccccEEEEeeCCcEEechh
Confidence 4789999999999999763 55553 3577776544
No 390
>3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia}
Probab=22.09 E-value=1.1e+02 Score=18.15 Aligned_cols=27 Identities=4% Similarity=-0.009 Sum_probs=20.9
Q ss_pred cHHHHHHHHHHHhCCCCccEEEEEcce
Q psy4181 23 TIGDLKKLIAAQTGTRWEKIVLKKWYT 49 (73)
Q Consensus 23 TV~~lK~~I~~~~gip~~~QrLif~Gk 49 (73)
-.+.+=+-+++..|+|++...+.|.--
T Consensus 97 ~s~~i~~~l~~~Lgi~~~riyI~f~d~ 123 (135)
T 3t5s_A 97 ISAAITGCLTQHFKVKPERVYISFNEA 123 (135)
T ss_dssp HHHHHHHHHHHHHCCCGGGEEEEEEC-
T ss_pred HHHHHHHHHHHhcccCccEEEEEeccc
Confidence 345666778889999999999988543
No 391
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Probab=22.05 E-value=70 Score=18.22 Aligned_cols=43 Identities=9% Similarity=-0.092 Sum_probs=28.1
Q ss_pred HHHHHhC-CCCccEEEEEcceEecCC--ccccccCCCCCCEEEEEe
Q psy4181 30 LIAAQTG-TRWEKIVLKKWYTIFKDH--IRIMDYEIHDGMNLELYY 72 (73)
Q Consensus 30 ~I~~~~g-ip~~~QrLif~Gk~L~D~--~tL~~y~I~~g~ti~L~~ 72 (73)
--+++.| +.+..+.|-.+|+.+.+. ..+...=-..|.+|.|..
T Consensus 65 spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g~~v~l~v 110 (117)
T 2byg_A 65 GAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKV 110 (117)
T ss_dssp SHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEE
T ss_pred CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEE
Confidence 3556789 999999999999999742 222111113467777654
No 392
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=21.94 E-value=1e+02 Score=22.04 Aligned_cols=42 Identities=12% Similarity=0.093 Sum_probs=31.0
Q ss_pred HHHHhCCCCccEEEEEcceEecCCcccccc--CCCCCCEEEEEe
Q psy4181 31 IAAQTGTRWEKIVLKKWYTIFKDHIRIMDY--EIHDGMNLELYY 72 (73)
Q Consensus 31 I~~~~gip~~~QrLif~Gk~L~D~~tL~~y--~I~~g~ti~L~~ 72 (73)
-+++.|+.+....+-.+|+.+.+...|..+ ....|+++.|.+
T Consensus 294 pA~~aGL~~GDvI~~vnG~~v~~~~~l~~~l~~~~~g~~v~l~V 337 (451)
T 3pv2_A 294 PAELAGLKAGDIITQINDTKITQATQVKTTISLLRVGSTVKIIV 337 (451)
T ss_dssp HHHHHTCCTTCEEEEETTEECCSHHHHHHHHHTSCTTCEEEEEE
T ss_pred hHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEE
Confidence 566789999999999999999876655543 245677777654
No 393
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=21.93 E-value=96 Score=18.95 Aligned_cols=42 Identities=14% Similarity=-0.017 Sum_probs=28.8
Q ss_pred HHHHh-CCCCccEEEEEcceEecCC--ccccccCCCCCCEEEEEe
Q psy4181 31 IAAQT-GTRWEKIVLKKWYTIFKDH--IRIMDYEIHDGMNLELYY 72 (73)
Q Consensus 31 I~~~~-gip~~~QrLif~Gk~L~D~--~tL~~y~I~~g~ti~L~~ 72 (73)
.+++. |+.+....+-.+|+.+.+. ..+...--..|+++.|.+
T Consensus 45 pA~~aggl~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v 89 (200)
T 2qt5_A 45 IAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKNVGERVVLEV 89 (200)
T ss_dssp HHHHTTSCCTTCEEEEETTEECTTSCHHHHHHHHHTCCSEEEEEE
T ss_pred hHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEE
Confidence 46666 9999999999999999876 333322223466666543
No 394
>2lna_A AFG3-like protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, MPP, hydrolase; NMR {Homo sapiens}
Probab=21.92 E-value=1.2e+02 Score=17.30 Aligned_cols=29 Identities=17% Similarity=0.101 Sum_probs=20.1
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhCCCCccE
Q psy4181 14 VRVKCNPDDTIGDLKKLIAAQTGTRWEKI 42 (73)
Q Consensus 14 ~~v~v~~~~TV~~lK~~I~~~~gip~~~Q 42 (73)
+.+.+.+-++-++-=+++++..||+++++
T Consensus 60 ~~f~IGSvd~FE~~Le~aQ~el~i~~~~~ 88 (99)
T 2lna_A 60 VWFNIGSVDTFERNLETLQQELGIEGENR 88 (99)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTCCTTTC
T ss_pred EEEEeCCHHHHHHHHHHHHHHcCCCcccc
Confidence 56666666666655567777889998765
No 395
>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}
Probab=21.92 E-value=90 Score=16.73 Aligned_cols=24 Identities=13% Similarity=0.010 Sum_probs=20.4
Q ss_pred HHHHhC-CCCccEEEEEcceEecCC
Q psy4181 31 IAAQTG-TRWEKIVLKKWYTIFKDH 54 (73)
Q Consensus 31 I~~~~g-ip~~~QrLif~Gk~L~D~ 54 (73)
-+++.| +.+..+.+-.+|+.+.+.
T Consensus 42 pA~~aG~l~~GD~I~~vng~~v~~~ 66 (98)
T 2opg_A 42 AACKDGRLWAGDQILEVNGIDLRKA 66 (98)
T ss_dssp HHHHHCCCCTTCEEEEETTEECTTC
T ss_pred hHHhCCCCCCCCEEEEECCEECCCC
Confidence 456679 999999999999999764
No 396
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A
Probab=21.92 E-value=1.1e+02 Score=16.57 Aligned_cols=42 Identities=19% Similarity=0.075 Sum_probs=27.8
Q ss_pred HHHHhC-CCCccEEEEEcceEecCCcccc--ccCCCCCCEEEEEe
Q psy4181 31 IAAQTG-TRWEKIVLKKWYTIFKDHIRIM--DYEIHDGMNLELYY 72 (73)
Q Consensus 31 I~~~~g-ip~~~QrLif~Gk~L~D~~tL~--~y~I~~g~ti~L~~ 72 (73)
-+++.| +.+....+-.+|+.+.+....+ .+--..|.++.|.+
T Consensus 49 pA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v 93 (101)
T 2jik_A 49 AAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRV 93 (101)
T ss_dssp HHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHTCCSEEEEEE
T ss_pred HHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEE
Confidence 455679 9999999999999997642111 11112467776654
No 397
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1
Probab=21.58 E-value=74 Score=16.97 Aligned_cols=42 Identities=12% Similarity=-0.018 Sum_probs=27.0
Q ss_pred HHHHhCCCCccEEEEEcceEecCC--ccccccCCCCCCEEEEEe
Q psy4181 31 IAAQTGTRWEKIVLKKWYTIFKDH--IRIMDYEIHDGMNLELYY 72 (73)
Q Consensus 31 I~~~~gip~~~QrLif~Gk~L~D~--~tL~~y~I~~g~ti~L~~ 72 (73)
-+++.|+.+....+-.+|+.+.+. ..+...=-..+.++.|.+
T Consensus 36 pA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v 79 (91)
T 2f5y_A 36 PAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLV 79 (91)
T ss_dssp HHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEE
T ss_pred HHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEE
Confidence 466779999999999999999853 222211112355666543
No 398
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}
Probab=21.57 E-value=23 Score=19.63 Aligned_cols=18 Identities=0% Similarity=-0.099 Sum_probs=8.9
Q ss_pred CCCCccEEEEEcceEecC
Q psy4181 36 GTRWEKIVLKKWYTIFKD 53 (73)
Q Consensus 36 gip~~~QrLif~Gk~L~D 53 (73)
|+.+....+-.+|+.+.+
T Consensus 17 GL~~GD~I~~InG~~v~~ 34 (91)
T 2kjp_A 17 KIEVGDKIISADGKNYQS 34 (91)
T ss_dssp CCCSSCEEEEETTBCCSS
T ss_pred cCCCCCEEEEECCEECCC
Confidence 445555555555555443
No 399
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=21.45 E-value=70 Score=17.66 Aligned_cols=43 Identities=12% Similarity=-0.007 Sum_probs=28.4
Q ss_pred HHHHHhC-CCCccEEEEEcceEecCCcccc--ccCCCCCCEEEEEe
Q psy4181 30 LIAAQTG-TRWEKIVLKKWYTIFKDHIRIM--DYEIHDGMNLELYY 72 (73)
Q Consensus 30 ~I~~~~g-ip~~~QrLif~Gk~L~D~~tL~--~y~I~~g~ti~L~~ 72 (73)
-.+++.| +.+..+.+-.+|..+.+....+ ..--..+.++.|.+
T Consensus 50 s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~~~~~~~~v~l~v 95 (113)
T 1um7_A 50 GPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVA 95 (113)
T ss_dssp SHHHHTTCCCTTCEEEEESSCBCTTCCHHHHHHHHHSCCSEEEEEE
T ss_pred CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEE
Confidence 3567779 9999999999999987652221 11123567766653
No 400
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Probab=21.40 E-value=28 Score=19.22 Aligned_cols=40 Identities=10% Similarity=-0.143 Sum_probs=26.4
Q ss_pred HHHhCCCCccEEEEEcceEecCCcccc--ccCCCCCCEEEEEe
Q psy4181 32 AAQTGTRWEKIVLKKWYTIFKDHIRIM--DYEIHDGMNLELYY 72 (73)
Q Consensus 32 ~~~~gip~~~QrLif~Gk~L~D~~tL~--~y~I~~g~ti~L~~ 72 (73)
+++ |+.+....+-.+|+.+.+....+ .+--..|.++.|.+
T Consensus 56 A~~-gL~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v 97 (103)
T 1n7t_A 56 ASK-LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELII 97 (103)
T ss_dssp TSS-SCCTTCEEEEETTEECSSCCHHHHHHHHHHCCSEEEEEE
T ss_pred hHH-CCCCCCEEEEECCEECCCCCHHHHHHHhhcCCCeEEEEE
Confidence 456 99999999999999987632211 11124577777654
No 401
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.34 E-value=65 Score=17.59 Aligned_cols=43 Identities=21% Similarity=0.087 Sum_probs=28.5
Q ss_pred HHHHHhC-CCCccEEEEEcceEecCCccccccC-C-CCCCEEEEEe
Q psy4181 30 LIAAQTG-TRWEKIVLKKWYTIFKDHIRIMDYE-I-HDGMNLELYY 72 (73)
Q Consensus 30 ~I~~~~g-ip~~~QrLif~Gk~L~D~~tL~~y~-I-~~g~ti~L~~ 72 (73)
--+++.| +.+....+-.+|+.+.+....+-.. + ..|.++.|.+
T Consensus 49 spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v 94 (104)
T 2djt_A 49 GPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAGGPQLHLVI 94 (104)
T ss_dssp CHHHHHCSCCTTCBEEEETTEECTTCCHHHHHHHHHHTCSEEEEEE
T ss_pred CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEE
Confidence 3456779 9999999999999997742111111 1 1477777764
No 402
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}
Probab=21.21 E-value=73 Score=16.89 Aligned_cols=43 Identities=12% Similarity=-0.101 Sum_probs=28.2
Q ss_pred HHHHHhC-CCCccEEEEEcceEecCCc--cccccCCCCCCEEEEEe
Q psy4181 30 LIAAQTG-TRWEKIVLKKWYTIFKDHI--RIMDYEIHDGMNLELYY 72 (73)
Q Consensus 30 ~I~~~~g-ip~~~QrLif~Gk~L~D~~--tL~~y~I~~g~ti~L~~ 72 (73)
--+++.| +.+..+.+-.+|+.+.+.. .+...--..|.++.|.+
T Consensus 40 spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v 85 (92)
T 2qg1_A 40 GIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSLGTVTLEV 85 (92)
T ss_dssp SHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEE
T ss_pred CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEE
Confidence 3567789 9999999999999997632 11111112566776653
No 403
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}
Probab=21.16 E-value=38 Score=19.12 Aligned_cols=42 Identities=14% Similarity=0.120 Sum_probs=27.8
Q ss_pred HHHHhCCCCccEEEEEcceEecCC--ccccccCCCCCCEEEEEe
Q psy4181 31 IAAQTGTRWEKIVLKKWYTIFKDH--IRIMDYEIHDGMNLELYY 72 (73)
Q Consensus 31 I~~~~gip~~~QrLif~Gk~L~D~--~tL~~y~I~~g~ti~L~~ 72 (73)
-+++.|+.+....+-.+|+.+.+. ..+..+=-..|.++.|.+
T Consensus 50 pA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v 93 (114)
T 2edz_A 50 PAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLV 93 (114)
T ss_dssp TTGGGTCCTTCEEEEESSSBCSSSCHHHHHHHHHHTCSEEEEEE
T ss_pred hHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEE
Confidence 367789999999999999998773 222211112477777754
No 404
>4hti_A Receptor-type tyrosine-protein phosphatase N2; phogrin, IA-2BETA, protein-tyrosine phosphatase, transmembra protein, diabetes, autoimmunity; 1.95A {Homo sapiens} PDB: 4htj_A
Probab=21.14 E-value=1.1e+02 Score=17.93 Aligned_cols=30 Identities=23% Similarity=0.303 Sum_probs=23.6
Q ss_pred CCCEEEEEeCCCC----------cHHHHHHHHHHHhCCCC
Q psy4181 10 LGKKVRVKCNPDD----------TIGDLKKLIAAQTGTRW 39 (73)
Q Consensus 10 ~G~~~~v~v~~~~----------TV~~lK~~I~~~~gip~ 39 (73)
.|..+++.|.|++ -+.+.|.+|++..|+-.
T Consensus 50 ~g~aVTFrV~~N~~n~taadVA~~a~~~K~~Le~~tG~~I 89 (99)
T 4hti_A 50 LGPAVTFKVSANVQNVTTEDVEKATVDNKDKLEETSGLKI 89 (99)
T ss_dssp ETTEEEEEECCCTTCCCHHHHHHHHHHTHHHHHHHHSSCE
T ss_pred cCceEEEEeccCCCCCCHHHHHHHHHHHHHHHHHhhCeEE
Confidence 6888899998765 25567899999999865
No 405
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Probab=21.14 E-value=1.1e+02 Score=17.97 Aligned_cols=42 Identities=10% Similarity=-0.066 Sum_probs=29.0
Q ss_pred HHHHhCCCCccEEEEEcceEecC--Cccccc-cCCCCCCEEEEEe
Q psy4181 31 IAAQTGTRWEKIVLKKWYTIFKD--HIRIMD-YEIHDGMNLELYY 72 (73)
Q Consensus 31 I~~~~gip~~~QrLif~Gk~L~D--~~tL~~-y~I~~g~ti~L~~ 72 (73)
-+++.|+.+....+-.+|+.+.+ ...+.. ..=..|.++.|.+
T Consensus 76 pA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~g~~v~l~v 120 (139)
T 2vz5_A 76 PAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLV 120 (139)
T ss_dssp HHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHCCTTCSEEEEEE
T ss_pred HHHHCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCEEEEEE
Confidence 46778999999999999999984 222221 1114678887754
No 406
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A
Probab=21.11 E-value=72 Score=19.72 Aligned_cols=42 Identities=10% Similarity=0.052 Sum_probs=29.8
Q ss_pred HHHHHhCCCCccEEEEEcceEecC--CccccccCCCCCCEEEEEe
Q psy4181 30 LIAAQTGTRWEKIVLKKWYTIFKD--HIRIMDYEIHDGMNLELYY 72 (73)
Q Consensus 30 ~I~~~~gip~~~QrLif~Gk~L~D--~~tL~~y~I~~g~ti~L~~ 72 (73)
--+++.|+.+..+.+-.+|..+.+ ...+.. -++.|.+|.|.+
T Consensus 121 spA~~aGL~~GD~Il~vng~~v~~~~~~~~~~-~l~~~~~v~l~v 164 (192)
T 3k1r_A 121 GQADSVGLQVGDEIVRINGYSISSCTHEEVIN-LIRTEKTVSIKV 164 (192)
T ss_dssp SHHHHTTCCTTEEEEEETTEECTTCCHHHHHH-HHTSSSEEEEEE
T ss_pred ChHHHcCCCCCCEEEEECCEECCCCCHHHHHH-HHcCCCeEEEEE
Confidence 456778999999999999999876 333322 244477777754
No 407
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}
Probab=21.11 E-value=83 Score=18.10 Aligned_cols=42 Identities=10% Similarity=0.045 Sum_probs=28.4
Q ss_pred HHHHHhC-CCCccEEEEEcceEecC--CccccccCCCCCCEEEEE
Q psy4181 30 LIAAQTG-TRWEKIVLKKWYTIFKD--HIRIMDYEIHDGMNLELY 71 (73)
Q Consensus 30 ~I~~~~g-ip~~~QrLif~Gk~L~D--~~tL~~y~I~~g~ti~L~ 71 (73)
-.+++.| +.+..+.|-.+|+.+.+ ...+..+=-..+.+|.|.
T Consensus 64 spA~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~L~ 108 (118)
T 3b76_A 64 GVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRTSSSIVLK 108 (118)
T ss_dssp SHHHHHCSSCTTCEEEEETTEEGGGSCHHHHHHHHHSCCSEEEEE
T ss_pred CHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 4677889 99999999999999983 222222222346666664
No 408
>3lcn_C MRNA transport factor GFD1; nuclear mRNA export, metal-binding, nucleus, RNA-binding, ZI finger, membrane, nuclear pore complex; 2.00A {Saccharomyces cerevisiae}
Probab=21.06 E-value=36 Score=15.80 Aligned_cols=15 Identities=33% Similarity=0.279 Sum_probs=11.0
Q ss_pred CCcHHHHHHHHHHHh
Q psy4181 21 DDTIGDLKKLIAAQT 35 (73)
Q Consensus 21 ~~TV~~lK~~I~~~~ 35 (73)
.+-..-||.+|+++-
T Consensus 5 ~sKm~lLKKKIEEQr 19 (29)
T 3lcn_C 5 ASKMKLLKKKIEEQR 19 (29)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345677899998864
No 409
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=20.99 E-value=1.2e+02 Score=16.80 Aligned_cols=17 Identities=12% Similarity=0.239 Sum_probs=12.5
Q ss_pred cHHHHHHHHHHHhCCCC
Q psy4181 23 TIGDLKKLIAAQTGTRW 39 (73)
Q Consensus 23 TV~~lK~~I~~~~gip~ 39 (73)
+..+|++++++..|+.-
T Consensus 71 ~~~el~~~L~el~gL~~ 87 (92)
T 2lqo_A 71 SADEVKAKLVKIAGLEH 87 (92)
T ss_dssp CHHHHHHHHHHHHCCSC
T ss_pred CHHHHHHHHHHhcCCcc
Confidence 56788888888877654
No 410
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Probab=20.98 E-value=51 Score=17.96 Aligned_cols=23 Identities=13% Similarity=0.043 Sum_probs=20.0
Q ss_pred HHHHhC-CCCccEEEEEcceEecC
Q psy4181 31 IAAQTG-TRWEKIVLKKWYTIFKD 53 (73)
Q Consensus 31 I~~~~g-ip~~~QrLif~Gk~L~D 53 (73)
-+++.| +.+..+.+-.+|..+.+
T Consensus 51 pA~~aG~l~~GD~I~~ing~~v~~ 74 (103)
T 2fcf_A 51 PAGKNGTLKPGDRIVEVDGMDLRD 74 (103)
T ss_dssp HHHHHCCCCTTCEEEEETTEECTT
T ss_pred cHHHcCCCCCCCEEEEECCEECCC
Confidence 456789 99999999999999977
No 411
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=20.86 E-value=88 Score=21.46 Aligned_cols=41 Identities=12% Similarity=0.133 Sum_probs=29.2
Q ss_pred HHHhCCCCccEEEEEcceEecCCcccccc--CCCCCCEEEEEe
Q psy4181 32 AAQTGTRWEKIVLKKWYTIFKDHIRIMDY--EIHDGMNLELYY 72 (73)
Q Consensus 32 ~~~~gip~~~QrLif~Gk~L~D~~tL~~y--~I~~g~ti~L~~ 72 (73)
+++.|+.+....+-.+|+.+.+...|..+ ....|+++.|.+
T Consensus 276 A~~aGL~~GDvI~~ing~~v~~~~~l~~~l~~~~~g~~v~l~v 318 (345)
T 3stj_A 276 SAKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGL 318 (345)
T ss_dssp HHHHTCCTTCEECEETTEECSCHHHHHHHHHTSCTTCEEEEEE
T ss_pred HHHcCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEE
Confidence 55678888888888899888876655432 235677777654
No 412
>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Probab=20.75 E-value=97 Score=16.95 Aligned_cols=43 Identities=9% Similarity=-0.120 Sum_probs=28.6
Q ss_pred HHHHHhC-CCCccEEEEEcceEecCCccccc--cCCCCCCEEEEEe
Q psy4181 30 LIAAQTG-TRWEKIVLKKWYTIFKDHIRIMD--YEIHDGMNLELYY 72 (73)
Q Consensus 30 ~I~~~~g-ip~~~QrLif~Gk~L~D~~tL~~--y~I~~g~ti~L~~ 72 (73)
--+++.| +.+..+.+-.+|+.+.+....+. .--..|..|.|.+
T Consensus 44 spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v 89 (105)
T 2awx_A 44 GAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNTSDFVYLKV 89 (105)
T ss_dssp SHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHSCCSEEEEEE
T ss_pred CHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEE
Confidence 4566789 99999999999999976432221 1123467776653
No 413
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=20.74 E-value=39 Score=18.46 Aligned_cols=42 Identities=19% Similarity=0.139 Sum_probs=27.1
Q ss_pred HHHHHhC-CCCccEEEEEcceEecCCccccccC-C-CCCCEEEEE
Q psy4181 30 LIAAQTG-TRWEKIVLKKWYTIFKDHIRIMDYE-I-HDGMNLELY 71 (73)
Q Consensus 30 ~I~~~~g-ip~~~QrLif~Gk~L~D~~tL~~y~-I-~~g~ti~L~ 71 (73)
--+++.| +.+..+.+-.+|+.+.+....+-.. + ..|.++.|.
T Consensus 47 spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~ 91 (103)
T 1wfv_A 47 GPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLL 91 (103)
T ss_dssp SHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHHHCSEECEE
T ss_pred ChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 3566779 9999999999999997642111111 1 356666554
No 414
>1wxa_A Afadin, AF-6 protein; RAS-binding domain, ubiquitin-like fold, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.15.1.5
Probab=20.72 E-value=1.4e+02 Score=17.54 Aligned_cols=33 Identities=9% Similarity=-0.003 Sum_probs=26.3
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhCCCC---ccEEEEE
Q psy4181 14 VRVKCNPDDTIGDLKKLIAAQTGTRW---EKIVLKK 46 (73)
Q Consensus 14 ~~v~v~~~~TV~~lK~~I~~~~gip~---~~QrLif 46 (73)
.+|-+..++|..+|=...-++.|++. ++=+|.-
T Consensus 26 ksvlvt~~tta~~vV~eaLekygL~~~~~~~Y~Lve 61 (116)
T 1wxa_A 26 KTILLSTTDTADFAVAESLEKYGLEKENPKDYCIAR 61 (116)
T ss_dssp EEEECCSSCCHHHHHHHHHHHHTCSSSCTTTEEEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCCchheEEEE
Confidence 45778899999999999999999865 5556643
No 415
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=20.67 E-value=1.4e+02 Score=17.66 Aligned_cols=43 Identities=23% Similarity=0.140 Sum_probs=30.1
Q ss_pred HHHHHhC-CCCccEEEEEcceEecCCccccccC--CCCCCEEEEEe
Q psy4181 30 LIAAQTG-TRWEKIVLKKWYTIFKDHIRIMDYE--IHDGMNLELYY 72 (73)
Q Consensus 30 ~I~~~~g-ip~~~QrLif~Gk~L~D~~tL~~y~--I~~g~ti~L~~ 72 (73)
-.+++.| +.+..+.+-.+|+.+.+...+.... -..|+.+.|.+
T Consensus 46 spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v 91 (196)
T 3gsl_A 46 GAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYV 91 (196)
T ss_dssp SHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSCSEEEEEE
T ss_pred ChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEE
Confidence 3578899 9999999999999998754433222 23466666653
No 416
>1b44_D ETB-POL, protein (B-POL subunit of heat-labIle enterotoxin); B subunit, heat-labIle enterotoxin anti-HSV; 3.30A {Escherichia coli} SCOP: b.40.2.1
Probab=20.44 E-value=54 Score=19.89 Aligned_cols=39 Identities=23% Similarity=0.263 Sum_probs=24.3
Q ss_pred EEcCCCCEEEEEeCCCCcHHHHHHHHH---------HHhCCCCccEEE
Q psy4181 6 CNDRLGKKVRVKCNPDDTIGDLKKLIA---------AQTGTRWEKIVL 44 (73)
Q Consensus 6 vk~~~G~~~~v~v~~~~TV~~lK~~I~---------~~~gip~~~QrL 44 (73)
+-..+|-++.|+|.-+.-+..-|.-|+ --.|+-++..+.
T Consensus 40 isf~ngatfqvevpgsqh~~sqk~~~ermkdtlr~ay~t~~ki~klcv 87 (129)
T 1b44_D 40 ITFKSGATFQVEVPGSQHIDSQKKAIERMKDTLRITYLTETKIDKLCV 87 (129)
T ss_dssp EECTTSCEEEECCCCTTSCSTHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred EEecCCcEEEEecCcchhhhhhhhHHHHHHHHHHHHHHhccchhheee
Confidence 344579999999987766554444333 235666665544
No 417
>2ns5_A Partitioning-defective 3 homolog; cell polarity, N-terminal domain, PB1 domain, asymmetric membrane localization, signaling protein; NMR {Rattus norvegicus}
Probab=20.43 E-value=1.3e+02 Score=17.13 Aligned_cols=57 Identities=14% Similarity=0.021 Sum_probs=36.5
Q ss_pred EEEEEEcCCCCEEEEEeCC-CCcHHHHHHHHHHH----hCCCCcc----EEEEE-cceEecCCccccc
Q psy4181 2 IEITCNDRLGKKVRVKCNP-DDTIGDLKKLIAAQ----TGTRWEK----IVLKK-WYTIFKDHIRIMD 59 (73)
Q Consensus 2 ~~i~vk~~~G~~~~v~v~~-~~TV~~lK~~I~~~----~gip~~~----QrLif-~Gk~L~D~~tL~~ 59 (73)
|.|.|.. .+..+.|.|.+ +.||..|=++--.+ .+-+++. .+|-+ +|-.|..++.|++
T Consensus 3 MKvtV~f-g~~~vvVPC~dg~~tV~~L~~~A~~RY~K~~~k~~~~~v~V~~l~~~~ggiLD~DD~l~d 69 (85)
T 2ns5_A 3 FKVTVCF-GRTRVDVPCGDGRMKVFSLIQQAVTRYRKAVAKDPNYWIQVHRLEHGDGGILDLDDILCD 69 (85)
T ss_dssp EEEEEEE-TTEEEEEEESSSCCCHHHHHHHHHHHHHHHTTCCTTSCEEEEEEECSSSCEECTTSCHHH
T ss_pred cEEEEEE-CCEEEEEECCCCcccHHHHHHHHHHHHHHhcCCCCCcEEEEEEEEeCCCcEeCcccchhh
Confidence 6888887 47888899955 45999886654443 2433333 22334 7778876666654
No 418
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=20.42 E-value=90 Score=15.20 Aligned_cols=19 Identities=21% Similarity=0.557 Sum_probs=15.4
Q ss_pred EEeCCCCcHHHHHHHHHHH
Q psy4181 16 VKCNPDDTIGDLKKLIAAQ 34 (73)
Q Consensus 16 v~v~~~~TV~~lK~~I~~~ 34 (73)
+.+.+++|+.+.-+.+.+.
T Consensus 3 ~~v~~~~~~~~a~~~m~~~ 21 (70)
T 3fio_A 3 IVVQPKDTVDRVAKILSRN 21 (70)
T ss_dssp EEECTTCBHHHHHHHHHHT
T ss_pred eEECCCCcHHHHHHHHHHc
Confidence 5688999999988777654
No 419
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=20.41 E-value=60 Score=15.12 Aligned_cols=42 Identities=17% Similarity=0.239 Sum_probs=25.7
Q ss_pred EEEeCCCCcHHHHHHHHHHHhCCCCccEEEEEcceEecCCccccccCCCCCCEEEE
Q psy4181 15 RVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLEL 70 (73)
Q Consensus 15 ~v~v~~~~TV~~lK~~I~~~~gip~~~QrLif~Gk~L~D~~tL~~y~I~~g~ti~L 70 (73)
.+.|.+.||... |+.+.|+++++..- .++ ....|..|.+|.+
T Consensus 4 ~y~V~~GDtl~~----Ia~~~~~~~~~l~~-~N~---------~~~~l~~G~~l~i 45 (48)
T 1e0g_A 4 TYRVRKGDSLSS----IAKRHGVNIKDVMR-WNS---------DTANLQPGDKLTL 45 (48)
T ss_dssp EEEECTTCCHHH----HHHHHTCCHHHHHH-HCS---------CGGGCCTTEEEEC
T ss_pred EEEEcCCCcHHH----HHHHHCcCHHHHHH-hCC---------CCCcCCcCCEEEE
Confidence 467789999865 56678888755311 122 2345677776653
No 420
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A
Probab=20.32 E-value=1e+02 Score=16.88 Aligned_cols=43 Identities=9% Similarity=-0.148 Sum_probs=29.0
Q ss_pred HHHHHhC-CCCccEEEEEcceEecCCcccc--ccCCCCCCEEEEEe
Q psy4181 30 LIAAQTG-TRWEKIVLKKWYTIFKDHIRIM--DYEIHDGMNLELYY 72 (73)
Q Consensus 30 ~I~~~~g-ip~~~QrLif~Gk~L~D~~tL~--~y~I~~g~ti~L~~ 72 (73)
--+++.| +.+..+.+-.+|+.+.+....+ ..--..|.++.|.+
T Consensus 49 spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v 94 (106)
T 3axa_A 49 GAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEV 94 (106)
T ss_dssp SHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEE
T ss_pred CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEE
Confidence 4567789 9999999999999997532221 11123577777654
No 421
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=20.31 E-value=56 Score=18.03 Aligned_cols=23 Identities=17% Similarity=0.021 Sum_probs=19.7
Q ss_pred HHHHhC-CCCccEEEEEcceEecC
Q psy4181 31 IAAQTG-TRWEKIVLKKWYTIFKD 53 (73)
Q Consensus 31 I~~~~g-ip~~~QrLif~Gk~L~D 53 (73)
-+++.| +.+..+.+-.+|+.+.+
T Consensus 50 pA~~aG~L~~GD~I~~vng~~v~~ 73 (105)
T 1wha_A 50 AAHRAGTLQVGDRVLSINGVDVTE 73 (105)
T ss_dssp SHHHHSSCCTTCEEEEESSCBCTT
T ss_pred HHHHcCCCCCCCEEEEECCEECCC
Confidence 456789 99999999999999876
No 422
>3ipr_A PTS system, IIA component; stranded parallel beta-sheet flanked by 3 alpha-helices on EACH SIDE, transferase; 2.50A {Enterococcus faecalis} SCOP: c.54.1.0
Probab=20.05 E-value=1.5e+02 Score=17.84 Aligned_cols=40 Identities=18% Similarity=0.087 Sum_probs=29.3
Q ss_pred CEEEEEeCCCCcHHHHHHHHHHHh-CCCCccEEEE----EcceEe
Q psy4181 12 KKVRVKCNPDDTIGDLKKLIAAQT-GTRWEKIVLK----KWYTIF 51 (73)
Q Consensus 12 ~~~~v~v~~~~TV~~lK~~I~~~~-gip~~~QrLi----f~Gk~L 51 (73)
....+.+.+++++.++.+++.+.. ..+.+...|+ |+|.+.
T Consensus 29 ~i~av~~~~~~~~~~~~~~i~~~i~~~~~~~gvlvLtDl~GGSp~ 73 (150)
T 3ipr_A 29 NIETVNLNSGDDVQALGGQIKTAIENVQQGDGVLVMVDLLSASPY 73 (150)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHHHHHCSSSCEEEEESSTTSHHH
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCHH
Confidence 466788999999999999988774 4566666665 456553
Done!