RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4181
(73 letters)
>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 100
Score = 82.0 bits (202), Expect = 4e-23
Identities = 65/73 (89%), Positives = 68/73 (93%)
Query: 1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDY 60
MIE+ CNDRLGKKVRVKCN DDTIGDLKKLIAAQTGTRW KIVLKKWYTIFKDH+ + DY
Sbjct: 28 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY 87
Query: 61 EIHDGMNLELYYQ 73
EIHDGMNLELYYQ
Sbjct: 88 EIHDGMNLELYYQ 100
>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 73
Score = 61.6 bits (149), Expect = 3e-15
Identities = 43/72 (59%), Positives = 56/72 (77%)
Query: 1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDY 60
MIE+ NDRLGKKVRVKC +D++GD KK+++ Q GT+ KIVL+K ++ KDHI + DY
Sbjct: 1 MIEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDY 60
Query: 61 EIHDGMNLELYY 72
E+HD NLELYY
Sbjct: 61 EVHDQTNLELYY 72
>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 50.8 bits (121), Expect = 8e-11
Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDY 60
+I++T +K + ++ K+ I+ + ++ +++VL I KD ++ +
Sbjct: 32 IIKVTVKT-PKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQH 90
Query: 61 EIHDGMNLEL 70
IHDG+ + L
Sbjct: 91 GIHDGLTVHL 100
>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 102
Score = 43.1 bits (101), Expect = 1e-07
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Query: 2 IEITCNDR--LGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIM- 58
I + C R ++ NPD + + + L ++G E+ + + D +
Sbjct: 10 ITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLG 69
Query: 59 DYEIHDGMNLEL 70
Y + DG + L
Sbjct: 70 SYGLKDGDMVVL 81
>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 95
Score = 41.5 bits (97), Expect = 3e-07
Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 11 GKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLEL 70
K VK D T +LK+ I + TG + + + + + + ++ G + +
Sbjct: 26 KTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKV-MYKGLVPEDKTLREIKVTSGAKIMV 84
>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 41.4 bits (97), Expect = 3e-07
Identities = 13/60 (21%), Positives = 22/60 (36%)
Query: 11 GKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLEL 70
G+ + D + +K I TG K L+ KD + Y + +G + L
Sbjct: 21 GQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVIHL 80
>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 84
Score = 40.0 bits (93), Expect = 9e-07
Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDY 60
+I++T K TI LK+ I+ + +++VL I KD +
Sbjct: 7 LIKVTVKT-PKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQC 65
Query: 61 EIHDGMNLEL 70
+ DG+ + L
Sbjct: 66 GVRDGLTVHL 75
>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 100
Score = 40.3 bits (94), Expect = 1e-06
Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 2/66 (3%)
Query: 2 IEITCNDRL--GKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMD 59
IE+ RL +K ++ T +L+ IA G + I + + + +
Sbjct: 18 IEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEE 77
Query: 60 YEIHDG 65
+
Sbjct: 78 QGVAHN 83
>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding
cofactor B {Mouse (Mus musculus) [TaxId: 10090]}
Length = 95
Score = 39.1 bits (91), Expect = 3e-06
Identities = 10/76 (13%), Positives = 28/76 (36%), Gaps = 8/76 (10%)
Query: 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVL-------KKWYTIFKDH 54
+ I+ + + + + TI + K + G+ + L K + + ++
Sbjct: 10 VFISSSLN-SFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQED 68
Query: 55 IRIMDYEIHDGMNLEL 70
+ Y + DG + +
Sbjct: 69 ALLGSYPVDDGCRIHV 84
>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 73
Score = 38.2 bits (89), Expect = 3e-06
Identities = 16/61 (26%), Positives = 22/61 (36%)
Query: 10 LGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLE 69
K V P+ T+ K+ I G L I KD + Y I DG ++
Sbjct: 9 GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVH 68
Query: 70 L 70
L
Sbjct: 69 L 69
>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 83
Score = 38.8 bits (90), Expect = 3e-06
Identities = 10/61 (16%), Positives = 20/61 (32%)
Query: 10 LGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLE 69
+ + KK I+ +++VL I +D + I DG +
Sbjct: 18 PQDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVH 77
Query: 70 L 70
+
Sbjct: 78 V 78
>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like
protein, OASL {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 37.6 bits (87), Expect = 9e-06
Identities = 17/69 (24%), Positives = 29/69 (42%)
Query: 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYE 61
I++ + G NP+ I LK+ I Q G ++ L+ + +D + + Y
Sbjct: 8 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYG 67
Query: 62 IHDGMNLEL 70
I D L L
Sbjct: 68 IQDSDTLIL 76
>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 97
Score = 36.8 bits (85), Expect = 2e-05
Identities = 10/78 (12%), Positives = 31/78 (39%), Gaps = 9/78 (11%)
Query: 2 IEITCNDRL-GKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVL--------KKWYTIFK 52
++I C+++ + + + T+ +K L++ +++L + +
Sbjct: 12 LKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELEN 71
Query: 53 DHIRIMDYEIHDGMNLEL 70
D + Y + +G L +
Sbjct: 72 DLQPLQFYSVENGDCLLV 89
>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like
protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 36.1 bits (83), Expect = 3e-05
Identities = 9/69 (13%), Positives = 25/69 (36%)
Query: 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYE 61
++ GK +++ DT+ +K+ + A G D ++ + +
Sbjct: 4 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELK 63
Query: 62 IHDGMNLEL 70
I +++
Sbjct: 64 IPKDYVVQV 72
>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal
domain {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 111
Score = 36.5 bits (84), Expect = 3e-05
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 11 GKKVRVKCNP-DDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLE 69
G+ + + + +G LK+ IA + K L KD++ + Y + G L
Sbjct: 40 GQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILT 99
Query: 70 L 70
L
Sbjct: 100 L 100
>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 35.6 bits (82), Expect = 4e-05
Identities = 9/70 (12%), Positives = 26/70 (37%)
Query: 1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDY 60
+ I + G+ + T+ LK+ ++ G + + L +D + + +Y
Sbjct: 3 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEY 62
Query: 61 EIHDGMNLEL 70
+ + +
Sbjct: 63 GLKPLSTVFM 72
>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis
thaliana) [TaxId: 3702]}
Length = 73
Score = 34.1 bits (78), Expect = 1e-04
Identities = 17/68 (25%), Positives = 25/68 (36%)
Query: 3 EITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEI 62
I GK++ + P DTI +K+ + + G + L D DY I
Sbjct: 2 LIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNI 61
Query: 63 HDGMNLEL 70
G L L
Sbjct: 62 EGGSVLHL 69
>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 34.0 bits (78), Expect = 1e-04
Identities = 10/63 (15%), Positives = 22/63 (34%)
Query: 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYE 61
+E+ + + + K+ IAA EK L + +D ++ +Y
Sbjct: 1 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 60
Query: 62 IHD 64
+
Sbjct: 61 VGG 63
>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 78
Score = 34.1 bits (78), Expect = 2e-04
Identities = 8/60 (13%), Positives = 27/60 (45%)
Query: 11 GKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLEL 70
V+ + D +I LK+++A + G +++ + +H+ + + ++ + +
Sbjct: 12 SYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHI 71
>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 90
Score = 33.8 bits (77), Expect = 3e-04
Identities = 12/73 (16%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Query: 1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEK---IVLKKWYTIFKDHIRI 57
+ I + + DDT+ DLK+ + TG E+ + LK ++ +++
Sbjct: 7 GLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKL 66
Query: 58 MDYEIHDGMNLEL 70
++ + +
Sbjct: 67 GALKLKPNTKIMM 79
>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger
domain-containing protein 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 76
Score = 32.2 bits (73), Expect = 0.001
Identities = 8/52 (15%), Positives = 18/52 (34%)
Query: 19 NPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLEL 70
+ + +L++ I L +D + DYE+ ++L
Sbjct: 20 SRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQL 71
>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding
cofactor B {Nematode (Caenorhabditis elegans) [TaxId:
6239]}
Length = 90
Score = 32.1 bits (73), Expect = 0.001
Identities = 10/67 (14%), Positives = 22/67 (32%), Gaps = 7/67 (10%)
Query: 11 GKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVL-------KKWYTIFKDHIRIMDYEIH 63
+ K ++ DLKK + GT + + + + + + D +
Sbjct: 15 DFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVR 74
Query: 64 DGMNLEL 70
DG +
Sbjct: 75 DGYRIHA 81
>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone
regulator-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 81
Score = 32.1 bits (73), Expect = 0.001
Identities = 9/54 (16%), Positives = 17/54 (31%), Gaps = 1/54 (1%)
Query: 18 CNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFK-DHIRIMDYEIHDGMNLEL 70
+ + + DL +++ G L K + I DG + L
Sbjct: 22 GSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVML 75
>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 31.8 bits (72), Expect = 0.001
Identities = 11/70 (15%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Query: 3 EITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYT--IFKDHIRIMDY 60
++T G + +V + ++ +LK I + G + L + +D + +
Sbjct: 2 DLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQ 61
Query: 61 EIHDGMNLEL 70
+ G + L
Sbjct: 62 GLGPGSTVLL 71
>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger
domain-containing protein 2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 76
Score = 31.8 bits (72), Expect = 0.001
Identities = 10/52 (19%), Positives = 22/52 (42%)
Query: 19 NPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLEL 70
+ TI +L++ + A R E L ++ + DY++ ++L
Sbjct: 20 SRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQL 71
>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId:
9606]}
Length = 76
Score = 31.8 bits (72), Expect = 0.001
Identities = 17/69 (24%), Positives = 29/69 (42%)
Query: 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYE 61
++I GK + ++ P DTI ++K I + G ++ L +D + DY
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 62 IHDGMNLEL 70
I L L
Sbjct: 61 IQKESTLHL 69
>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 116
Score = 31.9 bits (72), Expect = 0.002
Identities = 9/68 (13%), Positives = 23/68 (33%), Gaps = 8/68 (11%)
Query: 11 GKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIV-----LKKWY---TIFKDHIRIMDYEI 62
GK +P+D+ D+ K + WE+ + + ++ + ++
Sbjct: 26 GKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKL 85
Query: 63 HDGMNLEL 70
G +
Sbjct: 86 PFGKTTVM 93
>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 96
Score = 31.5 bits (71), Expect = 0.002
Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 11 GKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLEL 70
K V+ N D+ K + A TG + + + KD + ++ +GM + +
Sbjct: 17 EKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLM 75
>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 105
Score = 31.2 bits (70), Expect = 0.003
Identities = 12/86 (13%), Positives = 24/86 (27%), Gaps = 16/86 (18%)
Query: 1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGT----------RWEKIVLKKWYTI 50
+ + G+ + V + T+ DLKK I V + ++
Sbjct: 7 GMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLT 66
Query: 51 FKDHIR------IMDYEIHDGMNLEL 70
+ DY I + +
Sbjct: 67 SAGEKLTEDRKKLRDYGIRNRDEVSF 92
>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic
reticulum-resident ubiquitin-like domain member 1
protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 31.0 bits (70), Expect = 0.004
Identities = 8/65 (12%), Positives = 23/65 (35%), Gaps = 2/65 (3%)
Query: 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWY--TIFKDHIRIMD 59
+ + ++ + + + + ++G LK ++ R + Y + DH + D
Sbjct: 10 LLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRD 69
Query: 60 YEIHD 64
Sbjct: 70 LLPKQ 74
>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500
(2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 95
Score = 31.0 bits (70), Expect = 0.004
Identities = 9/69 (13%), Positives = 21/69 (30%), Gaps = 2/69 (2%)
Query: 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYE 61
I + + P+DT+G LK ++ + I + + +
Sbjct: 8 INVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQESQMKLIYQGRL--LQDPARTLSSLN 65
Query: 62 IHDGMNLEL 70
I + +
Sbjct: 66 ITNNCVIHC 74
>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog
A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}
Length = 77
Score = 30.2 bits (68), Expect = 0.005
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 2 IEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWY---TIFKDHIRIM 58
+ IT + +++ PD+T+ LK+ I A+ G + +K I D + I
Sbjct: 3 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 62
Query: 59 DYEIHDG 65
DY I +
Sbjct: 63 DYRIDEK 69
>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B
(Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 30.4 bits (68), Expect = 0.006
Identities = 10/73 (13%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
Query: 3 EITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIF-----KDHIRI 57
++T + ++ +P++T+ LK+ I ++ + + I+ D +
Sbjct: 2 QVTLKTLQQQTFKIDIDPEETVKALKEKIESE--KGKDAFPVAGQKLIYAGKILNDDTAL 59
Query: 58 MDYEIHDGMNLEL 70
+Y+I + + +
Sbjct: 60 KEYKIDEKNFVVV 72
>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 101
Score = 29.1 bits (65), Expect = 0.016
Identities = 6/57 (10%), Positives = 15/57 (26%), Gaps = 7/57 (12%)
Query: 16 VKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWY-------TIFKDHIRIMDYEIHDG 65
T+ LK+ + ++ E + ++ + DY
Sbjct: 23 KAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVS 79
>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 27.1 bits (60), Expect = 0.10
Identities = 7/56 (12%), Positives = 18/56 (32%)
Query: 9 RLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEIHD 64
R + T+ +LK+++ ++ L K + D + +
Sbjct: 8 RHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTS 63
>d1jb0b_ f.29.1.1 (B:) Apoprotein a2, PsaB {Synechococcus
elongatus [TaxId: 32046]}
Length = 739
Score = 27.1 bits (60), Expect = 0.18
Identities = 12/37 (32%), Positives = 14/37 (37%), Gaps = 10/37 (27%)
Query: 37 TRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELYYQ 73
TR I+ D+E HDGM E YQ
Sbjct: 17 TRR----------IWYAIAMAHDFESHDGMTEENLYQ 43
>d1wfya_ d.15.1.5 (A:) Regulator of G-protein signaling 14, RGS14
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 25.9 bits (57), Expect = 0.33
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 10 LGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVL 44
L + VR+ P + + + I A+ G +++VL
Sbjct: 26 LERVVRISAKPTKRLQEALQPILAKHGLSLDQVVL 60
>d1jb0a_ f.29.1.1 (A:) Apoprotein a1, PsaA {Synechococcus
elongatus [TaxId: 32046]}
Length = 743
Score = 24.4 bits (53), Expect = 1.4
Identities = 7/35 (20%), Positives = 11/35 (31%), Gaps = 10/35 (28%)
Query: 37 TRWEKIVLKKWYTIFKDHIRIMDYEIHDGMNLELY 71
T W I W H D++ H ++
Sbjct: 33 TTW--I----WNLHALAH----DFDTHTSDLEDIS 57
>d1wf9a1 d.15.1.1 (A:8-101) NPL4-like protein 1 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 94
Score = 23.7 bits (51), Expect = 1.9
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQ 34
M+ + D L ++V V P T+ LK LI Q
Sbjct: 2 MLRVRSRDGL-ERVSVD-GPHITVSQLKTLIQDQ 33
>d1rm6c2 d.15.4.2 (C:1-81) 4-hydroxybenzoyl-CoA reductase gamma
subunit HrcC, N-terminal domain {Thauera aromatica
[TaxId: 59405]}
Length = 81
Score = 23.3 bits (50), Expect = 2.5
Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRW 39
++ +T N G+ + + D + TGT+
Sbjct: 4 ILRLTLN---GRAREDLVPDNMLLLDYLRETVGLTGTKQ 39
>d1s3si_ d.15.1.2 (I:) p47 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 50
Score = 22.8 bits (49), Expect = 2.6
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 11 GKKVRVKCNPDDTIGDLKKLI 31
G ++ K N I D++ I
Sbjct: 29 GGRLVQKFNHSHRISDIRLFI 49
>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 94
Score = 23.3 bits (50), Expect = 2.6
Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 13/58 (22%)
Query: 21 DDTIGDLKKLIAAQTGT---RWEKIVLKKWYTIF-----KDHIRIMDYEIHDGMNLEL 70
+I LK+LIA + E I L I+ KD + Y I G + +
Sbjct: 37 GYSISFLKQLIAGKLQESVPDPELIDL-----IYCGRKLKDDQTLDFYGIQPGSTVHV 89
>d2fiqa1 c.1.10.7 (A:1-420) Putative tagatose 6-phosphate kinase 1
GatZ {Escherichia coli [TaxId: 562]}
Length = 420
Score = 23.3 bits (50), Expect = 3.5
Identities = 13/59 (22%), Positives = 21/59 (35%)
Query: 4 ITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMDYEI 62
I D LG + N D + +L+ A + KI L + D I + +
Sbjct: 83 ILGGDHLGPNCWQQENVDAAMEKSVELVKAYVRAGFSKIHLDASMSCAGDPIPLAPETV 141
>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase
fragment {Cow (Bos taurus) [TaxId: 9913]}
Length = 185
Score = 23.1 bits (49), Expect = 3.6
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 13 KVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHI 55
K +V NP +T+ D K+LI G R++ V++ + +
Sbjct: 53 KNQVAMNPTNTVFDAKRLI----GRRFDDAVVQSDMKHWPFMV 91
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 143
Score = 22.5 bits (48), Expect = 5.6
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 9/52 (17%)
Query: 8 DRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKDHIRIMD 59
+ L K + K G +K + +L W F + I+I D
Sbjct: 84 NELIKVLSPKYLGSWATGKVKGRVIE---------ILFSWTVWFPEDIKIRD 126
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.141 0.446
Gapped
Lambda K H
0.267 0.0603 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 328,518
Number of extensions: 13647
Number of successful extensions: 110
Number of sequences better than 10.0: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 59
Length of query: 73
Length of database: 2,407,596
Length adjustment: 41
Effective length of query: 32
Effective length of database: 1,844,666
Effective search space: 59029312
Effective search space used: 59029312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.2 bits)