Query psy4183
Match_columns 898
No_of_seqs 372 out of 2789
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 18:57:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4183.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4183hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0475|consensus 100.0 2.7E-71 5.8E-76 621.5 26.1 455 178-653 58-531 (696)
2 cd03684 ClC_3_like ClC-3-like 100.0 4.4E-61 9.6E-66 554.1 33.6 416 182-654 1-443 (445)
3 KOG0474|consensus 100.0 5.6E-58 1.2E-62 512.2 23.3 462 143-663 56-583 (762)
4 cd01036 ClC_euk Chloride chann 100.0 1.3E-56 2.9E-61 513.4 33.8 391 182-644 1-415 (416)
5 cd03683 ClC_1_like ClC-1-like 100.0 9.4E-56 2E-60 507.6 35.1 404 178-654 5-422 (426)
6 cd03685 ClC_6_like ClC-6-like 100.0 1.8E-54 3.8E-59 501.6 35.7 400 177-653 35-456 (466)
7 PRK01610 putative voltage-gate 100.0 5.3E-53 1.2E-57 483.1 30.7 350 263-647 56-413 (418)
8 cd01033 ClC_like Putative ClC 100.0 8.9E-52 1.9E-56 469.6 27.9 381 182-639 1-386 (388)
9 PRK01862 putative voltage-gate 100.0 4.2E-51 9E-56 487.0 29.3 401 178-646 24-430 (574)
10 cd01031 EriC ClC chloride chan 100.0 7.2E-51 1.6E-55 465.2 27.8 391 182-645 2-398 (402)
11 COG0038 EriC Chloride channel 100.0 4E-50 8.7E-55 461.8 30.2 351 264-649 70-428 (443)
12 PRK05277 chloride channel prot 100.0 5.3E-50 1.2E-54 462.5 29.7 398 177-645 3-411 (438)
13 cd01034 EriC_like ClC chloride 100.0 2.7E-50 5.8E-55 458.5 26.0 342 262-641 32-385 (390)
14 PF00654 Voltage_CLC: Voltage 100.0 7.8E-51 1.7E-55 457.6 20.6 341 267-637 2-354 (355)
15 KOG0476|consensus 100.0 5.1E-50 1.1E-54 455.0 19.4 419 177-648 98-567 (931)
16 cd00400 Voltage_gated_ClC CLC 100.0 6.9E-47 1.5E-51 430.1 27.6 378 182-633 1-383 (383)
17 cd03682 ClC_sycA_like ClC sycA 100.0 4E-45 8.8E-50 414.2 26.9 326 266-638 39-373 (378)
18 PRK03655 putative ion channel 100.0 6.2E-43 1.3E-47 398.5 28.2 372 178-635 12-396 (414)
19 cd03684 ClC_3_like ClC-3-like 100.0 8.9E-41 1.9E-45 385.5 32.5 385 447-898 1-393 (445)
20 KOG0475|consensus 100.0 4.8E-41 1E-45 378.1 24.3 335 486-898 143-482 (696)
21 PRK01610 putative voltage-gate 100.0 5.5E-36 1.2E-40 342.9 33.8 349 438-898 3-370 (418)
22 KOG0474|consensus 100.0 6.7E-38 1.5E-42 351.4 16.7 398 438-898 86-521 (762)
23 cd03683 ClC_1_like ClC-1-like 100.0 1.4E-35 2.9E-40 341.0 30.0 345 441-897 3-373 (426)
24 cd01036 ClC_euk Chloride chann 100.0 7.2E-36 1.6E-40 342.4 27.2 348 447-898 1-376 (416)
25 PRK01862 putative voltage-gate 100.0 4.7E-35 1E-39 349.3 33.1 346 439-898 24-388 (574)
26 cd01031 EriC ClC chloride chan 100.0 2.3E-35 5E-40 337.6 28.4 343 446-898 1-357 (402)
27 cd03685 ClC_6_like ClC-6-like 100.0 1.2E-34 2.6E-39 336.2 32.0 349 438-898 31-408 (466)
28 cd01033 ClC_like Putative ClC 100.0 2.9E-34 6.2E-39 326.5 31.5 333 447-898 1-351 (388)
29 PRK05277 chloride channel prot 100.0 1.1E-33 2.4E-38 326.9 33.6 350 441-898 2-370 (438)
30 PF00654 Voltage_CLC: Voltage 100.0 1.7E-34 3.8E-39 325.1 25.1 283 516-898 38-322 (355)
31 cd00400 Voltage_gated_ClC CLC 100.0 1.2E-33 2.5E-38 321.7 31.9 341 447-898 1-355 (383)
32 COG0038 EriC Chloride channel 100.0 4.9E-33 1.1E-37 320.4 31.9 306 481-898 70-384 (443)
33 KOG0476|consensus 100.0 1.8E-34 4E-39 328.7 16.2 395 439-897 95-524 (931)
34 cd03682 ClC_sycA_like ClC sycA 100.0 4.2E-32 9.1E-37 308.0 31.2 330 443-898 2-341 (378)
35 cd01034 EriC_like ClC chloride 100.0 5.5E-32 1.2E-36 308.4 29.0 334 451-898 1-349 (390)
36 PRK03655 putative ion channel 100.0 4.8E-31 1E-35 301.0 28.5 340 438-897 11-366 (414)
37 TIGR02865 spore_II_E stage II 34.5 5.3E+02 0.011 32.8 14.0 29 697-725 113-141 (764)
38 PF10518 TAT_signal: TAT (twin 30.7 43 0.00092 23.4 2.0 23 359-381 3-25 (26)
39 TIGR02865 spore_II_E stage II 27.9 2.7E+02 0.0058 35.4 9.9 32 438-469 113-144 (764)
40 PF01102 Glycophorin_A: Glycop 25.6 99 0.0021 29.9 4.3 16 701-716 67-82 (122)
41 KOG4267|consensus 20.3 2.3E+02 0.0049 27.0 5.3 67 540-635 28-94 (110)
42 PF05808 Podoplanin: Podoplani 20.2 34 0.00074 34.5 0.0 13 60-72 140-152 (162)
No 1
>KOG0475|consensus
Probab=100.00 E-value=2.7e-71 Score=621.54 Aligned_cols=455 Identities=51% Similarity=0.897 Sum_probs=420.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCCcccCCCCCchhhHHHHHhhccccccchhhhhH
Q psy4183 178 HTFYDSEEGSVAGIIDIGSSWMSDLKYGLCPEAFWLNKEQCCWSSNETSFEDTGNCSQWLTWAEVMGSNKEGFMAYTLEY 257 (898)
Q Consensus 178 ~~l~g~~vG~~a~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 257 (898)
.+++|..+|..+++.++.-+| |++.|+|+.++|+++++|| ..|++.+.|+.|..|...+....+....+.++|
T Consensus 58 ~~~IGl~ag~la~~~di~~~w--D~k~G~C~~~~~~n~~~CC-----~t~~~~~~c~~~~~w~~~~~~~~~w~~~~~~~~ 130 (696)
T KOG0475|consen 58 VLLIGLAAGFLAGLADILTSW--DLKEGYCTPNFWLNHEFCC-----STFTEDDVCKEWFFWCEHLGLDFSWTGHYIVSY 130 (696)
T ss_pred hhHhHhHHHHhhHHHHhhcch--hhccCcccchhhhhhhhhe-----eeeecCccchhhhhhHHHhccccCCCCcchHHH
Confidence 578899999999999999999 9999999999999999999 446666679999999998887667777788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcCCccccccccccccchhhhhhHHHHHhcCccccCCCCchhh
Q psy4183 258 VFFIAWALLFASLAAGLVRMFAPYACGSGIPEQNYSDVEGSSLVVYVGKSGHSSSKSCGRIMLAVSAGLSLRKGRTPWFT 337 (898)
Q Consensus 258 ~~~il~~~~~~~l~~~L~~~~~p~a~GsGIp~v~~~~l~G~~~~~~l~~~~~~~~K~l~~~ilav~sG~SlGrE~GP~v~ 337 (898)
+.|+.|++..+.++..+++.++|+++||||||+|. +++|...++++..|+ ++.|.++. .++++||+|+||| ||+||
T Consensus 131 l~y~~~al~fa~la~~lv~~~AP~A~gSGIpEIK~-ilSGf~~~~~lg~~t-l~iKsVal-~lsvaSGLSlGKE-GP~VH 206 (696)
T KOG0475|consen 131 LIYVLWALLFAFLAVSLVKVVAPYACGSGIPEIKT-ILSGFIIRGFLGKWT-LLIKSVAL-CLSVASGLSLGKE-GPSVH 206 (696)
T ss_pred HHHHHHHHHHHHHHHHHhhheehhhhcCCCcccee-eeccchhhhhhhHHH-Hhhhhhhh-eeeeccccccCCC-CCcee
Confidence 99999999999999999999999999999999999 999998899999999 99999999 9999999999999 99999
Q ss_pred hhhhhhhhhccccccCCCCHHHHHHHHHHHHhhhhhhhccCccccceeEEeeeccccchhhHHHHHHHHHHHHHHHHHhc
Q psy4183 338 LRPCIGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALIAAFVLRSIN 417 (898)
Q Consensus 338 iGa~ig~~l~~~f~~~~~~~~~~r~lvaaGaAAGlaAaF~APLaGvlFalE~l~~~~~~~~l~~~~~as~va~~v~~~l~ 417 (898)
++.++|+.++++|+++++++.++|++++|++|||+|++||||+||++|++||++.+++.+++|++++|+.+|..+.+.++
T Consensus 207 iA~c~g~~~s~~f~~~~~~e~~~reilsAaaAaGvavaFgAPIGGVlFslEev~~~fp~ktlw~sff~aLsAv~~L~~i~ 286 (696)
T KOG0475|consen 207 IATCIGNIFSKIFPKYRLNEAKKREILSAAAAAGVAVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALSAVTALRSIN 286 (696)
T ss_pred eeechhhhHhhhhhhhccchhHHHHHHHHHhhccchhhcCCccceeeeehhhhhhcCCccchHHHHHHHHHHHHHHeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcceeeeeecccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCchhHHHHHHHHHhhheeccCcc
Q psy4183 418 PFGNEHSVLFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSRLGQYPVTEVLVITAITTLISFPNPF 497 (898)
Q Consensus 418 ~~g~~~~~~f~~~~~~~~~~~~l~~~lllGil~Gl~g~lF~~l~~~~~~~~~~~~~~~~p~~~~~l~glv~gll~~~~p~ 497 (898)
+|+++...+|++.++.+|++.|+++|+++|++||+.|.+|+|.+.++.++|+..+..++|++++++++++++++++++|+
T Consensus 287 pf~~~~~vLf~V~Y~~~W~~~EL~pFi~LGifgGl~G~~~ir~n~~~~~~rK~~~lg~~pv~ev~~vt~iTaiIs~~np~ 366 (696)
T KOG0475|consen 287 PFGNSRLVLFYVDYDRPWSLFELLPFILLGIFGGLWGAFFIRLNIRFCRFRKSSKLGKFPVLEVVFVTLVTAIISLFNPE 366 (696)
T ss_pred ccCCCceEEEEEeccCCcccccchHHHHHHHhhhHHHHHHHHHHHHHHhccchhhccCCcchhHHHHHHHHHHHHhcCHH
Confidence 99999999999999999999999999999999999999999999999999998778889999999999999999999999
Q ss_pred ccccc---------CCC--CC-------chhHHHHHHHHHHHHHHHHHHHhcccccccccchhhhhhhHHHHHHHHHHHH
Q psy4183 498 TRMST---------KAG--PG-------VYTAVWLLMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQ 559 (898)
Q Consensus 498 ~~g~g---------~~~--~g-------~~~~~~~L~~~l~~K~l~t~ltlgsG~pGG~f~Psl~iGA~lG~l~G~l~~~ 559 (898)
.+.+. ... ++ .+...+.|+...++|+++|++|+|+++|+|+|.||+++||+.|+++|.++++
T Consensus 367 ~r~~~~e~i~~Lf~~C~~~~s~~l~~~~~~~~~~~L~~a~i~k~~~t~ftfGakvP~GifvPSmaiGA~aGr~vG~~~e~ 446 (696)
T KOG0475|consen 367 TRFNMSELITILFNKCSPSSSTSLPETTVYSAAILLLLALILKIALTIFTFGAKVPAGIFVPSLAIGAIAGRAVGIIVEQ 446 (696)
T ss_pred HHhhHHHHHHHHHhhcCCcccccCcccchHHHHHHHHHHHHHHHHHHHhhhhccCccceecchHHHHHHHHHHHHHHHHH
Confidence 98775 111 11 1234778889999999999999999999999999999999999999999999
Q ss_pred hhhhcCccchhccccCCCCCCChhHHHHHHHHHHHhhhhccchhhhhccccccccchhhHHHHHHHHHHHHHHHHHhhhc
Q psy4183 560 LAFHYPHIWIFAGECSTNDCITPGLYAMVGAAAVLGGVTRMTGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPI 639 (898)
Q Consensus 560 l~~~~p~~~~~~~~~~~g~~i~p~~~alvGmaA~lag~~raPltaivl~~Eltg~~~~~~~~li~~~~AagiAa~f~apl 639 (898)
+..+ ||++.|.. .++.|+.||++||||.++|+||+|+|.+++++|+||. .++++|.|+|++++.++++-+
T Consensus 447 l~~~-~~~~~fg~-----~ci~Pg~Ya~vGaAA~LsGvtrltvtlVVImFELTG~----l~~IlPlm~av~~SkwI~d~~ 516 (696)
T KOG0475|consen 447 LAQN-PDFNLFGL-----SCATPGAYALVGAAATLSGVTRLTVTLVVIMFELTGA----LNYILPLMLAVMISKWIGDGL 516 (696)
T ss_pred HhcC-CCccccch-----hhcCchHHHHHHHHHHhcCcceeeEEEEEEeeeccCc----ceeHHHHHHHHHHHHHHHhcc
Confidence 9877 99887744 5689999999999999999999999999999999999 999999999999999999988
Q ss_pred cc-cccccccccccc
Q psy4183 640 GG-VLFSLEEVSYYF 653 (898)
Q Consensus 640 ~g-~lF~lE~l~~~~ 653 (898)
+. .++.-.+..+.+
T Consensus 517 gk~gIyda~I~~ng~ 531 (696)
T KOG0475|consen 517 GKTGIYDAHIELNGY 531 (696)
T ss_pred ccchHHHHHHHhcCC
Confidence 62 366654444433
No 2
>cd03684 ClC_3_like ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn
Probab=100.00 E-value=4.4e-61 Score=554.08 Aligned_cols=416 Identities=56% Similarity=0.959 Sum_probs=359.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCCcccCCCCCchhhHHHHHhhccccccchhhhhHHHHH
Q psy4183 182 DSEEGSVAGIIDIGSSWMSDLKYGLCPEAFWLNKEQCCWSSNETSFEDTGNCSQWLTWAEVMGSNKEGFMAYTLEYVFFI 261 (898)
Q Consensus 182 g~~vG~~a~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~i 261 (898)
|+++|+++..+++..+|+.+.+.+.+ ++..|+
T Consensus 1 g~~~g~~~~~i~~~~~~~~~~~~~~~------------------------------------------------~~~~~~ 32 (445)
T cd03684 1 GIAIGLIAGLIDIIASWLSDLKEGYC------------------------------------------------NYIIYV 32 (445)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHhHH------------------------------------------------HHHHHH
Confidence 57899999999999999998874311 345577
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcCCccccccccccccchhhhhhHHHHHhcCccccCCCCchhhhhhh
Q psy4183 262 AWALLFASLAAGLVRMFAPYACGSGIPEQNYSDVEGSSLVVYVGKSGHSSSKSCGRIMLAVSAGLSLRKGRTPWFTLRPC 341 (898)
Q Consensus 262 l~~~~~~~l~~~L~~~~~p~a~GsGIp~v~~~~l~G~~~~~~l~~~~~~~~K~l~~~ilav~sG~SlGrE~GP~v~iGa~ 341 (898)
+++++++.++++++++++|+++||||||||+ +++|.+.++++++|+ ++.|++++ ++++++|+|+||| ||++|+|++
T Consensus 33 ~~~~~~~~i~~~l~~~~~p~a~GsGIp~v~~-~l~g~~~~~~~~~~~-~~~k~l~~-~l~i~~G~s~GrE-GP~v~iGa~ 108 (445)
T cd03684 33 LLALLFAFIAVLLVKVVAPYAAGSGIPEIKT-ILSGFIIRGFLGKWT-LLIKSVGL-VLAVASGLSLGKE-GPLVHIATC 108 (445)
T ss_pred HHHHHHHHHHHHHHHhcCccccCCCHHHHHH-HHcCccccccccHHH-HHHHHHhh-HHhhccCCcCCCC-CCcchHHHH
Confidence 8888999999999999999999999999999 899977788899999 99999999 9999999999999 999999999
Q ss_pred hhhhhccccccCCCCHHHHHHHHHHHHhhhhhhhccCccccceeEEeeeccccchhhHHHHHHHHHHHHHHHHHhccCCC
Q psy4183 342 IGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALIAAFVLRSINPFGN 421 (898)
Q Consensus 342 ig~~l~~~f~~~~~~~~~~r~lvaaGaAAGlaAaF~APLaGvlFalE~l~~~~~~~~l~~~~~as~va~~v~~~l~~~g~ 421 (898)
+|++++|++++++.+++|||++++||+|||++|+||||++|++|++||+.++++.+.++++++++++|+++.+.++.++.
T Consensus 109 ia~~l~~~~~~~~~~~~~~r~li~~GaaAGlaAaF~APi~G~lFalE~l~~~~~~~~l~~~~~as~~a~~v~~~~~~~~~ 188 (445)
T cd03684 109 VGNIISRLFPKYRRNEAKRREILSAAAAAGVAVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALVAAFTLKSLNPFGT 188 (445)
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhhhhHHhcCCccchhhhhhHhhhhhccHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 99999999976678999999999999999999999999999999999999999999999999999999999998866666
Q ss_pred cceeeeeecccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCchhHHHHHHHHHhhheeccCcccccc
Q psy4183 422 EHSVLFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSRLGQYPVTEVLVITAITTLISFPNPFTRMS 501 (898)
Q Consensus 422 ~~~~~f~~~~~~~~~~~~l~~~lllGil~Gl~g~lF~~l~~~~~~~~~~~~~~~~p~~~~~l~glv~gll~~~~p~~~g~ 501 (898)
++...|+++...+|+..|+++++++|+++|++|.+|++.+++.++++++.+.++++++++++++++++++.++.|+..++
T Consensus 189 ~~~~~f~~~~~~~~~~~~l~~~i~lGi~~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~l~~~~p~~~~~ 268 (445)
T cd03684 189 GRLVLFEVEYDRDWHYFELIPFILLGIFGGLYGAFFIKANIKWARFRKKSLLKRYPVLEVLLVALITALISFPNPYTRLD 268 (445)
T ss_pred CCceEEeccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHccc
Confidence 65545655555677888999999999999999999999999999988765434567889999999999999999988766
Q ss_pred cCC------C-------------------CCchhHHHHHHHHHHHHHHHHHHHhcccccccccchhhhhhhHHHHHHHHH
Q psy4183 502 TKA------G-------------------PGVYTAVWLLMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIG 556 (898)
Q Consensus 502 g~~------~-------------------~g~~~~~~~L~~~l~~K~l~t~ltlgsG~pGG~f~Psl~iGA~lG~l~G~l 556 (898)
+.. . ++.......++.++++|+++|++|+++|.|||+|+|++++||++|+++|.+
T Consensus 269 g~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~K~~~t~lt~gsG~~GG~f~P~l~iGA~~G~~~g~~ 348 (445)
T cd03684 269 MTELLELLFNECEPGDDNSLCCYRDPPAGDGVYKALWSLLLALIIKLLLTIFTFGIKVPAGIFVPSMAVGALFGRIVGIL 348 (445)
T ss_pred hhhHHHHHHhcCCCcccccccccccccCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcceeHHHHHHHHHHhHHHHHH
Confidence 510 0 011123456677889999999999999999999999999999999999999
Q ss_pred HHHhhhhcCccchhccccCCC-CCCChhHHHHHHHHHHHhhhhccchhhhhccccccccchhhHHHHHHHHHHHHHHHHH
Q psy4183 557 MQQLAFHYPHIWIFAGECSTN-DCITPGLYAMVGAAAVLGGVTRMTGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAF 635 (898)
Q Consensus 557 ~~~l~~~~p~~~~~~~~~~~g-~~i~p~~~alvGmaA~lag~~raPltaivl~~Eltg~~~~~~~~li~~~~AagiAa~f 635 (898)
++.+...+||+..|.+ |+++ ...+|+.|+++||+|++++++|+|+|++++++|+|++ .+.++|.++++.+|+.+
T Consensus 349 ~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~alvGmaa~~a~~~raPlt~ivlv~ElTg~----~~~l~pl~ia~~iA~~v 423 (445)
T cd03684 349 VEQLAYSYPDSIFFAC-CTAGPSCITPGLYAMVGAAAFLGGVTRMTVSLVVIMFELTGA----LNYILPLMIAVMVSKWV 423 (445)
T ss_pred HHHHHhhCCccccccc-ccCCCCccCchHHHHHHHHHHhcchhccchhhhheeeeccCC----cccHHHHHHHHHHHHHH
Confidence 9877655676543322 3333 3478899999999999999999999999999999997 89999999999999999
Q ss_pred hhhcc-cccccccccccccc
Q psy4183 636 GAPIG-GVLFSLEEVSYYFP 654 (898)
Q Consensus 636 ~apl~-g~lF~lE~l~~~~s 654 (898)
++-+. ..+|+.+...+.++
T Consensus 424 s~~~~~~siY~~~l~~~g~p 443 (445)
T cd03684 424 ADAIGKEGIYDAHIHLNGYP 443 (445)
T ss_pred HHHhCCCCHHHHHHHhcCCC
Confidence 99987 57887776666543
No 3
>KOG0474|consensus
Probab=100.00 E-value=5.6e-58 Score=512.17 Aligned_cols=462 Identities=31% Similarity=0.457 Sum_probs=376.6
Q ss_pred CCCCcccccccccccccccccccchhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCC
Q psy4183 143 PSGSFGLVFQTPLIHSLKHDYHNSWLNFFHNKIPLHTFYDSEEGSVAGIIDIGSSWMSDLKYGLCPEAFWLNKEQCCWSS 222 (898)
Q Consensus 143 ~~~~~~~~~~~p~~~~~~~~~~~~w~~~~~~~~~~~~l~g~~vG~~a~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~ 222 (898)
.|=|||+|=|.+..|..+++.....++....|-.+.+++|+.+|++|.++|+..+.+.+++++...+.. .+||
T Consensus 56 ESLDYei~ENdlf~e~~r~~~k~~~~~y~~~kW~~~~lIGi~TgLva~fidl~Ven~ag~Kf~~v~~~v----~~~~--- 128 (762)
T KOG0474|consen 56 ESLDYEICENDLFLEDWRTRDKKKGRRYEAVKWMVCFLIGICTGLVALFIDLFVENFAGLKFGVVQNSV----EECR--- 128 (762)
T ss_pred cccchhhhcchHHHHHHHhhcccceeeeehHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHH----HHhh---
Confidence 355999999988887766533333232222233358899999999999999999999999987653321 1221
Q ss_pred CCCcccCCCCCchhhHHHHHhhccccccchhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcCCcccc
Q psy4183 223 NETSFEDTGNCSQWLTWAEVMGSNKEGFMAYTLEYVFFIAWALLFASLAAGLVRMFAPYACGSGIPEQNYSDVEGSSLVV 302 (898)
Q Consensus 223 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~l~~~L~~~~~p~a~GsGIp~v~~~~l~G~~~~~ 302 (898)
+..+.++..++.|+.+++++..+++.++.+++|.++||||||||+ ++||++.|+
T Consensus 129 -------------------------s~~g~~~~~~l~~~g~Nl~lv~~as~lv~~iaP~AAGSGIPevK~-YLNGV~iP~ 182 (762)
T KOG0474|consen 129 -------------------------SQKGCLALSLLVLLGFNLVLVFLASVLVAYIAPVAAGSGIPEVKC-YLNGVKIPG 182 (762)
T ss_pred -------------------------hccccHHHHHHHHHHHhHHHHHHHHHHHHeechhccCCCCchhhh-hhcCccCcc
Confidence 001236678899999999999999999999999999999999999 999999999
Q ss_pred ccccccccchhhhhhHHHHHhcCccccCCCCchhhhhhhhhhhhcc-----------ccccCCCCHHHHHHHHHHHHhhh
Q psy4183 303 YVGKSGHSSSKSCGRIMLAVSAGLSLRKGRTPWFTLRPCIGNILSY-----------LFPKYGRNEAKKREILSAAAAAG 371 (898)
Q Consensus 303 ~l~~~~~~~~K~l~~~ilav~sG~SlGrE~GP~v~iGa~ig~~l~~-----------~f~~~~~~~~~~r~lvaaGaAAG 371 (898)
.++.+| +++|+++. +.+|++|+.+||| ||++|.|+++|+.+++ +| ++.+|++|||+++.||+|||
T Consensus 183 ivrl~T-L~~Ki~Gv-i~sV~gGL~~GKE-GPMIHsGa~Vaagl~QG~S~~~r~~~r~f-r~FrnDrdrRD~VscGaAAG 258 (762)
T KOG0474|consen 183 IVRLRT-LIVKILGV-IFSVAGGLAVGKE-GPMIHSGSVVAAGLGQGGSTSLRKDWRWF-RYFRNDRDRRDLVSCGAAAG 258 (762)
T ss_pred eeehhh-hHHhHhhh-hhhhhhhhhccCc-CCeeehhHHHHhcccCCCccchhhhhhhh-hhhcccchhhhhhhcchHHh
Confidence 999999 99999999 9999999999999 9999999999999985 23 35578999999999999999
Q ss_pred hhhhccCccccceeEEeeeccccchhhHHHHHHHHHHHHHHHHHh---------ccCCCcceeeeeecc-cCcchhhhHH
Q psy4183 372 VSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALIAAFVLRSI---------NPFGNEHSVLFYVEY-NKPWIFFELI 441 (898)
Q Consensus 372 laAaF~APLaGvlFalE~l~~~~~~~~l~~~~~as~va~~v~~~l---------~~~g~~~~~~f~~~~-~~~~~~~~l~ 441 (898)
+||+|+||+||++|++||..+.|+...+|++|+++.+++++.+.+ ..|+....+.|++.. +..|+..|++
T Consensus 259 VaAAF~APvGGvLFaLEE~aS~Wnq~L~WR~fFss~i~~f~l~~~i~~~~~G~~g~f~~~GLi~f~vf~~~~~y~~~el~ 338 (762)
T KOG0474|consen 259 VAAAFRAPVGGVLFALEEGASWWNQALLWRTFFSSAIVAFVLRAFILSCLSGKCGLFGKGGLINFDVFDGPVDYHIHELP 338 (762)
T ss_pred HHHHhCCCccceEEEechhhHHHHhhHHHHHHHHhHHHHHhHHHHHHHHhcCchhccCCcceEEecccCCcccccccccc
Confidence 999999999999999999999999999999999999999998833 125555666666543 3468889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-ccCCchhHHHHHHHHHhhheeccCccccccc--------------CCCC
Q psy4183 442 PFVGLGVIGGIIAYIFIRLNLKWCRYRKMS-RLGQYPVTEVLVITAITTLISFPNPFTRMST--------------KAGP 506 (898)
Q Consensus 442 ~~lllGil~Gl~g~lF~~l~~~~~~~~~~~-~~~~~p~~~~~l~glv~gll~~~~p~~~g~g--------------~~~~ 506 (898)
+++++|+++|++|++|+.++.+...+|+++ +.+..++++.+++.++++.+.+..|...-.. ...+
T Consensus 339 ~f~~iGViGGlLGalfN~Ln~~~~~~r~~~~k~k~~kvlea~~Vs~~ts~~af~l~~l~~C~P~~~~~~~~~~p~f~Cp~ 418 (762)
T KOG0474|consen 339 PFLLIGVIGGLLGALFNYLNLKKVLRRYNYEKGKIGKVLEALLVSLVTSVLAFGLPFLADCQPCPPSITEGQCPTFFCPD 418 (762)
T ss_pred ceeEeehhhhhHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHhhhHHHhcCCCCCCCcccccCccccCCC
Confidence 999999999999999999987776665553 3344567888899999998887766322111 0112
Q ss_pred Cchh-------------------------HHHHHHHHHHHHHHHHHHHhcccccccccchhhhhhhHHHHHHHHHHHHhh
Q psy4183 507 GVYT-------------------------AVWLLMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLA 561 (898)
Q Consensus 507 g~~~-------------------------~~~~L~~~l~~K~l~t~ltlgsG~pGG~f~Psl~iGA~lG~l~G~l~~~l~ 561 (898)
|.++ ....|.++++..+++++.|+|.-.|.|.|.|++.+||+.||++|.++...
T Consensus 419 ~~YNdlAtL~fnt~ddaVrnLFh~~~~ef~~~tL~iFfv~yf~L~~~TfGi~vpsGlFiP~iL~GAa~GRlvg~~l~~~- 497 (762)
T KOG0474|consen 419 GEYNDLATLFFNTNDDAVRNLFHSPTNEFGILTLAIFFVLYFFLACWTFGIAVPSGLFIPVILTGAAYGRLVGMLLGSY- 497 (762)
T ss_pred CchhHHHHHHcCCcHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHhcccccccchhHHHHhhHHHHHHHHHHHHHh-
Confidence 2221 13356788899999999999999999999999999999999999988754
Q ss_pred hhcCccchhccccCCCCCCChhHHHHHHHHHHHhhhhccchhhhhccccccccchhhHHHHHHHHHHHHHHHHHhhhccc
Q psy4183 562 FHYPHIWIFAGECSTNDCITPGLYAMVGAAAVLGGVTRMTGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGG 641 (898)
Q Consensus 562 ~~~p~~~~~~~~~~~g~~i~p~~~alvGmaA~lag~~raPltaivl~~Eltg~~~~~~~~li~~~~AagiAa~f~apl~g 641 (898)
..++|+.||++||||+++|++||++|..+|++|.|+ ..+++|.|++-.+|.++++-+..
T Consensus 498 ----------------~~id~G~yAllGAAa~LGG~mRMTvSL~VIl~E~Tn-----~~~~lPiMlvLliaK~VGD~FNe 556 (762)
T KOG0474|consen 498 ----------------TNIDPGLYALLGAAAFLGGVMRMTVSLCVILLELTN-----NLLLLPIMLVLLIAKTVGDSFNE 556 (762)
T ss_pred ----------------hccCchHHHHHhHHHHhCCeEEEEeeeehHHHHhhh-----hhhhhHHHHHHHHHHHHHhhhhh
Confidence 258999999999999999999999999999999994 47889999999999999999999
Q ss_pred cccccccccc-----ccchhhHHHHHH
Q psy4183 642 VLFSLEEVSY-----YFPLKTLWRSFF 663 (898)
Q Consensus 642 ~lF~lE~l~~-----~~s~~~l~~~f~ 663 (898)
.+|.+.+-.+ .++.....+-+.
T Consensus 557 giYd~~i~LkgvP~Le~~pe~~mr~L~ 583 (762)
T KOG0474|consen 557 GIYDIIIQLKGVPFLEWEPEPYMRNLT 583 (762)
T ss_pred hhHHHhhhccCCccccCCCchHhhhhh
Confidence 9998754333 344444444443
No 4
>cd01036 ClC_euk Chloride channel, ClC. These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.
Probab=100.00 E-value=1.3e-56 Score=513.40 Aligned_cols=391 Identities=35% Similarity=0.558 Sum_probs=330.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCCcccCCCCCchhhHHHHHhhccccccchhhhhHHHHH
Q psy4183 182 DSEEGSVAGIIDIGSSWMSDLKYGLCPEAFWLNKEQCCWSSNETSFEDTGNCSQWLTWAEVMGSNKEGFMAYTLEYVFFI 261 (898)
Q Consensus 182 g~~vG~~a~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~i 261 (898)
|+++|+++++++..++|+++++++.+.+. .++++.+++.|+
T Consensus 1 ~~~~Glv~~~~~~~~~~~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~ 41 (416)
T cd01036 1 GLLMGLVAVVLDYAVESSLDAGQWLLRRI---------------------------------------PGSYLLGYLMWV 41 (416)
T ss_pred CeeehHHHHHHHHHHHHHHHHHHHHHHHc---------------------------------------ccchHHHHHHHH
Confidence 46789999999999999999987644210 012344667788
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcCCccccccccccccchhhhhhHHHHHhcCccccCCCCchhhhhhh
Q psy4183 262 AWALLFASLAAGLVRMFAPYACGSGIPEQNYSDVEGSSLVVYVGKSGHSSSKSCGRIMLAVSAGLSLRKGRTPWFTLRPC 341 (898)
Q Consensus 262 l~~~~~~~l~~~L~~~~~p~a~GsGIp~v~~~~l~G~~~~~~l~~~~~~~~K~l~~~ilav~sG~SlGrE~GP~v~iGa~ 341 (898)
.+++++++++++++++++|+++||||||+|+ +++|.+.++++++|+ ++.|++++ ++++++|+|+||| ||++|+|++
T Consensus 42 ~~~~~~~~~~~~l~~~~~p~a~GsGIp~v~~-~l~g~~~~~~l~~~~-~~~K~i~~-~l~igsG~svGrE-GP~V~iGa~ 117 (416)
T cd01036 42 LWSVVLVLISSGICLYFAPQAAGSGIPEVMA-YLNGVHLPMYLSIRT-LIAKTISC-ICAVASGLPLGKE-GPLVHLGAM 117 (416)
T ss_pred HHHHHHHHHHHHHHHhcCcccCCCCHHHHHH-HHcCCcccccccHHH-HHHHHHHH-HHHHhcCCCCCCC-CchHHHHHH
Confidence 9999999999999999999999999999999 899988888999999 99999999 9999999999999 999999999
Q ss_pred hhhhhccccccCC----------CCHHHHHHHHHHHHhhhhhhhccCccccceeEEeeeccccchhhHHHHHHHHHHHHH
Q psy4183 342 IGNILSYLFPKYG----------RNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALIAAF 411 (898)
Q Consensus 342 ig~~l~~~f~~~~----------~~~~~~r~lvaaGaAAGlaAaF~APLaGvlFalE~l~~~~~~~~l~~~~~as~va~~ 411 (898)
++++++|++++.+ ++++|||++++||+|||+||+||||++|++|++||+.++++.+.++++++++++|++
T Consensus 118 ig~~l~~~~~~~~~~~~~~~~~~~~~~~~r~ll~aGaaAGlaAaF~APiaGvlFalE~~~~~~~~~~~~~~~~as~~a~~ 197 (416)
T cd01036 118 IGAGLLQGRSRTLGCHVHLFQLFRNPRDRRDFLVAGAAAGVASAFGAPIGGLLFVLEEVSTFFPVRLAWRVFFAALVSAF 197 (416)
T ss_pred HHHHHHhhcccccccccchhhhccCHHHHHHHHHHHhhcchhhccCCcceeeeeeeHHhhccccHHHHHHHHHHHHHHHH
Confidence 9999999765322 578899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCccee----------eeeecccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc---cCCchh
Q psy4183 412 VLRSINPFGNEHSV----------LFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSR---LGQYPV 478 (898)
Q Consensus 412 v~~~l~~~g~~~~~----------~f~~~~~~~~~~~~l~~~lllGil~Gl~g~lF~~l~~~~~~~~~~~~---~~~~p~ 478 (898)
+.+.+..+..+... .+..+...+++..|+++++++|++||++|.+|++.+++.++++++.+ .+++++
T Consensus 198 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~illGv~~G~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~ 277 (416)
T cd01036 198 VIQIYNSFNSGFELLDRSSAMFLSLTVFELHVPLNLYEFIPTVVIGVICGLLAALFVRLSIIFLRWRRRLLFRKTARYRV 277 (416)
T ss_pred HHHHhccccCCccccccccccceeccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhH
Confidence 99887433322110 11223345677889999999999999999999999999888776532 234567
Q ss_pred HHHHHHHHHhhheeccCcccccccCCCCCchhHHHHHHHHHHHHHHHHHHHhcccccccccchhhhhhhHHHHHHHHHHH
Q psy4183 479 TEVLVITAITTLISFPNPFTRMSTKAGPGVYTAVWLLMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQ 558 (898)
Q Consensus 479 ~~~~l~glv~gll~~~~p~~~g~g~~~~g~~~~~~~L~~~l~~K~l~t~ltlgsG~pGG~f~Psl~iGA~lG~l~G~l~~ 558 (898)
+++.+++++++++.+ ...++.+++.|+++|.+|+++|.|||+|.|++++||++|+++|.+++
T Consensus 278 ~~~~~~~~i~~~~~~------------------~~~l~~~~~~K~~~t~~t~~sg~pGG~f~Psl~iGA~~G~~~g~~~~ 339 (416)
T cd01036 278 LEPVLFTLIYSTIHY------------------APTLLLFLLIYFWMSALAFGIAVPGGTFIPSLVIGAAIGRLVGLLVH 339 (416)
T ss_pred HHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHH
Confidence 788888888887765 33566788899999999999999999999999999999999999987
Q ss_pred HhhhhcCccchhccccCCC-CCCChhHHHHHHHHHHHhhhhccchhhhhccccccccchhhHHHHHHHHHHHHHHHHHhh
Q psy4183 559 QLAFHYPHIWIFAGECSTN-DCITPGLYAMVGAAAVLGGVTRMTGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGA 637 (898)
Q Consensus 559 ~l~~~~p~~~~~~~~~~~g-~~i~p~~~alvGmaA~lag~~raPltaivl~~Eltg~~~~~~~~li~~~~AagiAa~f~a 637 (898)
.+. |+... |..+ .+++|+.|+++||+|++++++|+|+|++++++|+||+ .++++|.++++.+|+.+++
T Consensus 340 ~~~---~~~~~----~~~~~~~~~~~~~alvGmaa~l~~~~r~Plt~~vi~~ElTg~----~~~l~pl~ia~~ia~~v~~ 408 (416)
T cd01036 340 RIA---VAGIG----AESATLWADPGVYALIGAAAFLGGTTRLTFSICVIMMELTGD----LHHLLPLMVAILIAKAVAD 408 (416)
T ss_pred HHc---ccccc----ccccCCccChHHHHHHHHHHHhhhhhcchHhhhhheeeccCC----hhhHHHHHHHHHHHHHHHH
Confidence 653 21000 0000 2478999999999999999999999999999999998 8999999999999999998
Q ss_pred hcccccc
Q psy4183 638 PIGGVLF 644 (898)
Q Consensus 638 pl~g~lF 644 (898)
-+...+|
T Consensus 409 ~~~~siY 415 (416)
T cd01036 409 AFCESLY 415 (416)
T ss_pred hhCCCCC
Confidence 8776555
No 5
>cd03683 ClC_1_like ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia
Probab=100.00 E-value=9.4e-56 Score=507.57 Aligned_cols=404 Identities=30% Similarity=0.485 Sum_probs=333.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCCcccCCCCCchhhHHHHHhhccccccchhhhhH
Q psy4183 178 HTFYDSEEGSVAGIIDIGSSWMSDLKYGLCPEAFWLNKEQCCWSSNETSFEDTGNCSQWLTWAEVMGSNKEGFMAYTLEY 257 (898)
Q Consensus 178 ~~l~g~~vG~~a~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 257 (898)
..++|+++|+++.+++..++++.+++.....+ . +. +.+..+
T Consensus 5 ~~l~gv~~Gl~~~~~~~~~~~~~~~~~~~~~~--------------------~-~~------------------~~~~~~ 45 (426)
T cd03683 5 LALLGILMALISIAMDFAVEKLLNARRWLYSL--------------------L-TG------------------NSLLQY 45 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------------c-cc------------------chHHHH
Confidence 67889999999999999999999887532210 0 01 123455
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcCCccccccccccccchhhhhhHHHHHhcCccccCCCCchhh
Q psy4183 258 VFFIAWALLFASLAAGLVRMFAPYACGSGIPEQNYSDVEGSSLVVYVGKSGHSSSKSCGRIMLAVSAGLSLRKGRTPWFT 337 (898)
Q Consensus 258 ~~~il~~~~~~~l~~~L~~~~~p~a~GsGIp~v~~~~l~G~~~~~~l~~~~~~~~K~l~~~ilav~sG~SlGrE~GP~v~ 337 (898)
+.|++++++++.++++++++++|+++||||||+|+ +++|.+.++.+++|+ ++.|++++ ++++++|+|+||| ||++|
T Consensus 46 l~~~~~~~~~~~~~~~l~~~~~p~a~GsGIp~v~~-~l~g~~~~~~l~~r~-~~~k~i~~-~l~i~sG~svGrE-GP~v~ 121 (426)
T cd03683 46 LVWVAYPVALVLFSALFCKYISPQAVGSGIPEMKT-ILRGVVLPEYLTFKT-LVAKVIGL-TCALGSGLPLGKE-GPFVH 121 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHHH-HHcCCCccccccHHH-HHHHHHHH-HHHHhcCCCCCCC-CchHH
Confidence 67788899989999999999999999999999999 889887788888998 99999999 9999999999999 99999
Q ss_pred hhhhhhhhhccccccC---CCCHHHHHHHHHHHHhhhhhhhccCccccceeEEeeeccccchhhHHHHHHHHHHHHHHHH
Q psy4183 338 LRPCIGNILSYLFPKY---GRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALIAAFVLR 414 (898)
Q Consensus 338 iGa~ig~~l~~~f~~~---~~~~~~~r~lvaaGaAAGlaAaF~APLaGvlFalE~l~~~~~~~~l~~~~~as~va~~v~~ 414 (898)
+|+++++.++|+++.. ++++++||++++||+|||+||+||||++|++|++||+.++++.+.+++++++|++|+++.+
T Consensus 122 iGa~i~~~~~~~~~~~~~~~~~~~~rr~Li~~GaaAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~i~s~~a~~v~~ 201 (426)
T cd03683 122 ISSIVAALLSKLTTFFSGIYENESRRMEMLAAACAVGVACTFGAPIGGVLFSIEVTSTYFAVRNYWRGFFAATCGAFTFR 201 (426)
T ss_pred HHHHHHHHHHhhcccccccccCHHHHHHHHHhHhhhhhHHhcCCcceeeEEEeehhhhhccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987521 3578889999999999999999999999999999999999999999999999999999888
Q ss_pred HhccC-CCccee--eeeec--ccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-----cCCchhHHHHHH
Q psy4183 415 SINPF-GNEHSV--LFYVE--YNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSR-----LGQYPVTEVLVI 484 (898)
Q Consensus 415 ~l~~~-g~~~~~--~f~~~--~~~~~~~~~l~~~lllGil~Gl~g~lF~~l~~~~~~~~~~~~-----~~~~p~~~~~l~ 484 (898)
.+... ++.+.. .+... ...+++..++++++++|+++|++|.+|++.+.+.++++++.+ .+..+++++.++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~lGv~~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 281 (426)
T cd03683 202 LLAVFFSDQETITALFKTTFFVDFPFDVQELPIFALLGIICGLLGALFVFLHRKIVRFRRKNRLFSKFLKRSPLLYPAIV 281 (426)
T ss_pred HHHhhcCCCccccccccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHH
Confidence 76432 222211 02111 234577789999999999999999999999999888765432 123467788888
Q ss_pred HHHhhheeccCcccccccCCCCCchhHHHHHHHHHHHHHHHHHHHhcccccccccchhhhhhhHHHHHHHHHHHHhhhhc
Q psy4183 485 TAITTLISFPNPFTRMSTKAGPGVYTAVWLLMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHY 564 (898)
Q Consensus 485 glv~gll~~~~p~~~g~g~~~~g~~~~~~~L~~~l~~K~l~t~ltlgsG~pGG~f~Psl~iGA~lG~l~G~l~~~l~~~~ 564 (898)
+++++.+.++ ...+..+++.|+++|.+|+++|.|||+|.|++.+||++|+++|..++.+.
T Consensus 282 g~~~~~l~~p-----------------~~~l~~~~~~K~~~t~~t~gsG~~GGif~Psl~iGa~~G~~~g~~~~~~~--- 341 (426)
T cd03683 282 ALLTAVLTFP-----------------FLTLFLFIVVKFVLTALAITLPVPAGIFMPVFVIGAALGRLVGEIMAVLF--- 341 (426)
T ss_pred HHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHhCCCChhhhHHHHHHHHHHHHHHHHHHHHHc---
Confidence 8888765432 33566778999999999999999999999999999999999999887652
Q ss_pred CccchhccccCCC-CCCChhHHHHHHHHHHHhhhhccchhhhhccccccccchhhHHHHHHHHHHHHHHHHHhhhccccc
Q psy4183 565 PHIWIFAGECSTN-DCITPGLYAMVGAAAVLGGVTRMTGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVL 643 (898)
Q Consensus 565 p~~~~~~~~~~~g-~~i~p~~~alvGmaA~lag~~raPltaivl~~Eltg~~~~~~~~li~~~~AagiAa~f~apl~g~l 643 (898)
|+. +|.+. ...+|+.|+++||+|++++++|+|.++ ++++|+||+ .+.++|.++++.+|+.+++-+...+
T Consensus 342 p~~-----~~~~~~~~~~~~~~alvGmaa~~a~~~ra~~t~-vlv~E~Tg~----~~~llpl~ia~~ia~~v~~~~~~~i 411 (426)
T cd03683 342 PEG-----IRGGISNPIGPGGYAVVGAAAFSGAVTHTVSVA-VIIFELTGQ----ISHLLPVLIAVLISNAVAQFLQPSI 411 (426)
T ss_pred Ccc-----cccCCCCCcCchHHHHHHHHHHHHHHHhHHHHH-heeeeecCC----cchHHHHHHHHHHHHHHHHhhCCCH
Confidence 311 11111 247899999999999999999998876 599999998 8999999999999999999888888
Q ss_pred ccccccccccc
Q psy4183 644 FSLEEVSYYFP 654 (898)
Q Consensus 644 F~lE~l~~~~s 654 (898)
|+.....++++
T Consensus 412 Y~~~l~~~~~p 422 (426)
T cd03683 412 YDSIIKIKKLP 422 (426)
T ss_pred HHHHHHhCCCC
Confidence 88766655543
No 6
>cd03685 ClC_6_like ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.
Probab=100.00 E-value=1.8e-54 Score=501.59 Aligned_cols=400 Identities=34% Similarity=0.506 Sum_probs=320.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCCcccCCCCCchhhHHHHHhhccccccchhhhh
Q psy4183 177 LHTFYDSEEGSVAGIIDIGSSWMSDLKYGLCPEAFWLNKEQCCWSSNETSFEDTGNCSQWLTWAEVMGSNKEGFMAYTLE 256 (898)
Q Consensus 177 ~~~l~g~~vG~~a~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 256 (898)
+..++|++.|+++.+++...+|+++++.+.+.+. .+ +. +++.+
T Consensus 35 l~ilvGi~~Gl~~~~~~~~i~~~~~~~~~~~~~~----------------~~---~~------------------~~~~~ 77 (466)
T cd03685 35 ICLLIGIFTGLVAYFIDLAVENLAGLKFLVVKNY----------------IE---KG------------------RLFTA 77 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------------hc---cc------------------chHHH
Confidence 4566777777777777777777777765533110 00 01 12234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcCCccccccccccccchhhhhhHHHHHhcCccccCCCCchh
Q psy4183 257 YVFFIAWALLFASLAAGLVRMFAPYACGSGIPEQNYSDVEGSSLVVYVGKSGHSSSKSCGRIMLAVSAGLSLRKGRTPWF 336 (898)
Q Consensus 257 ~~~~il~~~~~~~l~~~L~~~~~p~a~GsGIp~v~~~~l~G~~~~~~l~~~~~~~~K~l~~~ilav~sG~SlGrE~GP~v 336 (898)
+..|+.++++++.++++++++++|+++||||||+|+ ++||.+.++.+++|+ ++.|++++ ++++++|+|+||| ||++
T Consensus 78 ~~~~~~~~~~~~li~~~l~~~~~p~a~GsGip~v~~-~l~g~~~~~~l~~r~-~~~K~i~~-~l~vgsG~s~GrE-GP~v 153 (466)
T cd03685 78 FLVYLGLNLVLVLVAALLVAYIAPTAAGSGIPEVKG-YLNGVKIPHILRLKT-LLVKIVGV-ILSVSGGLALGKE-GPMI 153 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHH-HHcCcCccccchHHH-HHHHHHHH-HHHHhcCCCCCCC-CCcc
Confidence 556777888899999999999999999999999999 899877777778888 99999999 9999999999999 9999
Q ss_pred hhhhhhhhhhccccc----------cCCCCHHHHHHHHHHHHhhhhhhhccCccccceeEEeeeccccchhhHHHHHHHH
Q psy4183 337 TLRPCIGNILSYLFP----------KYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCA 406 (898)
Q Consensus 337 ~iGa~ig~~l~~~f~----------~~~~~~~~~r~lvaaGaAAGlaAaF~APLaGvlFalE~l~~~~~~~~l~~~~~as 406 (898)
|+||++|++++|.++ ++.++++|||++++||+|||+||+||||++|++|++||+.++++.+..+++++++
T Consensus 154 ~iGa~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~r~li~~GaAAGlaaaF~APl~G~lFa~E~l~~~~~~~~~~~~l~~s 233 (466)
T cd03685 154 HIGACIAAGLSQGGSTSLRLDFRWFRYFRNDRDKRDFVTCGAAAGVAAAFGAPVGGVLFSLEEVASFWNQALTWRTFFSS 233 (466)
T ss_pred hHHHHHHHHHhhccccccccchhhhhhccCHHHHHHHHHHHhhcchhhccCCCcceeeeeeehhhhhcchhHHHHHHHHH
Confidence 999999999997321 1224788999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHhccC-CCc--------ceeeeeec-ccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc--cC
Q psy4183 407 LIAAFVLRSINPF-GNE--------HSVLFYVE-YNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSR--LG 474 (898)
Q Consensus 407 ~va~~v~~~l~~~-g~~--------~~~~f~~~-~~~~~~~~~l~~~lllGil~Gl~g~lF~~l~~~~~~~~~~~~--~~ 474 (898)
++|+++.+.+... +.. +...|... ...+++..|+++++++|+++|++|.+|++.+++.++++++.+ .+
T Consensus 234 ~ias~va~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~illGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~ 313 (466)
T cd03685 234 MIVTFTLNFFLSGCNSGKCGLFGPGGLIMFDGSSTKYLYTYFELIPFMLIGVIGGLLGALFNHLNHKVTRFRKRINHKGK 313 (466)
T ss_pred HHHHHHHHHHHHHcCCCCccccCCccceecccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 8888887765321 111 11112221 234577889999999999999999999999999988876542 22
Q ss_pred CchhHHHHHHHHHhhheeccCcccccccCCCCCchhHHHHHHHHHHHHHHHHHHHhcccccccccchhhhhhhHHHHHHH
Q psy4183 475 QYPVTEVLVITAITTLISFPNPFTRMSTKAGPGVYTAVWLLMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVG 554 (898)
Q Consensus 475 ~~p~~~~~l~glv~gll~~~~p~~~g~g~~~~g~~~~~~~L~~~l~~K~l~t~ltlgsG~pGG~f~Psl~iGA~lG~l~G 554 (898)
.++++...+++++++++.+ ...+..++++|+++|++|+++|.|||+|+|++++||++|+++|
T Consensus 314 ~~~~l~~~lv~~~~~~~~~------------------~~~l~~~~~~k~l~t~lt~gsG~~GGif~Psl~iGA~~G~~~g 375 (466)
T cd03685 314 LLKVLEALLVSLVTSVVAF------------------PQTLLIFFVLYYFLACWTFGIAVPSGLFIPMILIGAAYGRLVG 375 (466)
T ss_pred hhHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHH
Confidence 2345555566666655533 2345566688999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCccchhccccCCCCCCChhHHHHHHHHHHHhhhhccchhhhhccccccccchhhHHHHHHHHHHHHHHHH
Q psy4183 555 IGMQQLAFHYPHIWIFAGECSTNDCITPGLYAMVGAAAVLGGVTRMTGNILSYLFPKYGRNEAKKREILSAAAAAGVSVA 634 (898)
Q Consensus 555 ~l~~~l~~~~p~~~~~~~~~~~g~~i~p~~~alvGmaA~lag~~raPltaivl~~Eltg~~~~~~~~li~~~~AagiAa~ 634 (898)
.+++.+. | ..+.+|+.|+++||+|++++++|+|+|++++++|+||+ .++++|.++++.+|+.
T Consensus 376 ~~~~~~~---~-----------~~~~~~~~~aliGmaa~lag~~raPlt~iviv~ElTg~----~~~l~pl~ia~~iA~~ 437 (466)
T cd03685 376 ILLGSYF---G-----------FTSIDPGLYALLGAAAFLGGVMRMTVSLTVILLELTNN----LTYLPPIMLVLMIAKW 437 (466)
T ss_pred HHHHHHc---c-----------ccCCCchHHHHHHHHHHHhHHhhhhHHHHHHhhhhcCC----hhhHHHHHHHHHHHHH
Confidence 9987642 2 13578999999999999999999999999999999998 9999999999999999
Q ss_pred Hhhhccccccccccccccc
Q psy4183 635 FGAPIGGVLFSLEEVSYYF 653 (898)
Q Consensus 635 f~apl~g~lF~lE~l~~~~ 653 (898)
+++-+...+|+.....+.+
T Consensus 438 va~~~~~siY~~~l~~~g~ 456 (466)
T cd03685 438 VGDYFNEGIYDIIIQLKGV 456 (466)
T ss_pred HHHHhCCCHHHHHHHhCCC
Confidence 9998877777766555543
No 7
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=100.00 E-value=5.3e-53 Score=483.06 Aligned_cols=350 Identities=17% Similarity=0.153 Sum_probs=292.2
Q ss_pred HHHHHHHHHHHHHHHhcC--CCCCCChhhhhhhhhcCCccccccccccccchhhhhhHHHHHhcCccccCCCCchhhhhh
Q psy4183 263 WALLFASLAAGLVRMFAP--YACGSGIPEQNYSDVEGSSLVVYVGKSGHSSSKSCGRIMLAVSAGLSLRKGRTPWFTLRP 340 (898)
Q Consensus 263 ~~~~~~~l~~~L~~~~~p--~a~GsGIp~v~~~~l~G~~~~~~l~~~~~~~~K~l~~~ilav~sG~SlGrE~GP~v~iGa 340 (898)
.+++++.+++.+.+++.| +.+++|++|+++++.+ ++++++|+ .+.|++++ ++++++|+|+||| ||++|+|+
T Consensus 56 ~p~~ggll~g~~~~~~~~~~~~~~~g~~~vi~av~~----~g~~~~~~-~~~k~~~~-~l~igsG~S~GrE-GP~v~iGa 128 (418)
T PRK01610 56 TPALGGLAAGLLLWGWQKFTQQRPHAPTDYMEALQT----DGQFDYAA-SLVKSLAS-LLVVTSGSAIGRE-GAMILLAA 128 (418)
T ss_pred HHHHHHHHHHHHHHHHcccccccCCCcHHHHHHHHc----CCCCCccH-HHHHHHHH-HHHHHcCCccccc-cHHHHHHH
Confidence 355566666666666655 4678999999995443 35688888 99999999 9999999999999 99999999
Q ss_pred hhhhhhccccccCCCCHHHHHHHHHHHHhhhhhhhccCccccceeEEeeeccccchhhHHHHHHHHHHHHHHHHHhccCC
Q psy4183 341 CIGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALIAAFVLRSINPFG 420 (898)
Q Consensus 341 ~ig~~l~~~f~~~~~~~~~~r~lvaaGaAAGlaAaF~APLaGvlFalE~l~~~~~~~~l~~~~~as~va~~v~~~l~~~g 420 (898)
+++++++|++| +++|||++++||+|||+||+||||++|++|++|++.++++.+.+.++++++++|+.+.+.+ ++
T Consensus 129 ~~g~~~~~~~~----~~~~~r~li~~GaaAGlaa~F~aPlaG~lFa~E~l~~~~~~~~~~p~~ias~~a~~v~~~~--~g 202 (418)
T PRK01610 129 LAASCFAQRFT----PRQEWKLWIACGAAAGMASAYHAPLAGSLFIAEILFGTLMLASLGPVVISAVVALLTTNLL--NG 202 (418)
T ss_pred HHHHHHHHHhC----ChHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH--cC
Confidence 99999999885 4678999999999999999999999999999999999999999999999999999999987 55
Q ss_pred CcceeeeeecccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCchhHHHHHHHHHhhheeccCccccc
Q psy4183 421 NEHSVLFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSRLGQYPVTEVLVITAITTLISFPNPFTRM 500 (898)
Q Consensus 421 ~~~~~~f~~~~~~~~~~~~l~~~lllGil~Gl~g~lF~~l~~~~~~~~~~~~~~~~p~~~~~l~glv~gll~~~~p~~~g 500 (898)
+++. .|+++...+++..++++++++|+++|++|.+|++..++.+++.++. +.+++++..+++++++++.++.|+..+
T Consensus 203 ~~~~-~~~i~~~~~~~~~~l~~~i~lGii~Gl~g~~f~~~~~~~~~~~~~~--~~~~~~~~~lggli~g~l~~~~p~~~G 279 (418)
T PRK01610 203 SDAL-LYNVQLSVTVQARDYALIISTGLLAGLCGPLLLTLMNASHRGFVSL--KLAPPWQLALGGLIVGLLSLFTPAVWG 279 (418)
T ss_pred CCCC-eeecCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--ccchhHHHHHHHHHHHHHHHHhhHHhC
Confidence 4322 2455544557778999999999999999999999999888776643 345667899999999999999998877
Q ss_pred ccCC-----CCCchhHHHHHHHHHHHHHHHHHHHhcccccccccchhhhhhhHHHHHHHHHHHHhhhhcCccchhccccC
Q psy4183 501 STKA-----GPGVYTAVWLLMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECS 575 (898)
Q Consensus 501 ~g~~-----~~g~~~~~~~L~~~l~~K~l~t~ltlgsG~pGG~f~Psl~iGA~lG~l~G~l~~~l~~~~p~~~~~~~~~~ 575 (898)
++.. .++. .....+..+++.|+++|++|+|+|.+||.|+|++++||++|+++|++++.+. |+
T Consensus 280 ~G~~~i~~~~~~~-~~~~~l~~l~l~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~~~~~~---~~--------- 346 (418)
T PRK01610 280 NGYSVVQSFLTAP-PLLMLIAGIFLCKLLAVLASSGSGAPGGVFTPTLFVGLAIGMLYGRSLGLWL---PD--------- 346 (418)
T ss_pred CcHHHHHHHHcCC-hhHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHhC---CC---------
Confidence 6611 1111 1233455567899999999999999999999999999999999999987642 21
Q ss_pred CCCCCChhHHHHHHHHHHHhhhhccchhhhhccccccccchhhHHHHHHHHHHHHHHHHHhhhcc-ccccccc
Q psy4183 576 TNDCITPGLYAMVGAAAVLGGVTRMTGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIG-GVLFSLE 647 (898)
Q Consensus 576 ~g~~i~p~~~alvGmaA~lag~~raPltaivl~~Eltg~~~~~~~~li~~~~AagiAa~f~apl~-g~lF~lE 647 (898)
...++..|+++||+|++++++|+|+|++++++|+|++ ++.++|.++++.+|+.+++-+. ..+|..+
T Consensus 347 --~~~~~~~~a~vGmaA~laa~~~aPltaivl~~Eltg~----~~~~~p~~ia~~ia~~vs~~~~~~siy~~~ 413 (418)
T PRK01610 347 --GEEITLLLGLTGMATLLAATTHAPIMSTLMICEMTGE----YQLLPGLLIACVIASVISRTLRRDSIYRQH 413 (418)
T ss_pred --cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHhCC----HhHHHHHHHHHHHHHHHHHHhCCCCchHHH
Confidence 2344789999999999999999999999999999997 8899999999999999998774 4555443
No 8
>cd01033 ClC_like Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=8.9e-52 Score=469.63 Aligned_cols=381 Identities=20% Similarity=0.206 Sum_probs=306.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCCcccCCCCCchhhHHHHHhhccccccchhhhhHHHHH
Q psy4183 182 DSEEGSVAGIIDIGSSWMSDLKYGLCPEAFWLNKEQCCWSSNETSFEDTGNCSQWLTWAEVMGSNKEGFMAYTLEYVFFI 261 (898)
Q Consensus 182 g~~vG~~a~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~i 261 (898)
|++.|+.+.++..+.|+++++.++...+ ...+...+.++|++|..
T Consensus 1 G~~~gl~a~~f~~~~~~~~~l~~~~~~~---------------~~~~~~~~~~~~~~~~~-------------------- 45 (388)
T cd01033 1 GVGAGLGGGLLTLLLHGVQHLAFGYSEG---------------SFLTGVAAVSPIRRALS-------------------- 45 (388)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCccc---------------cchhhhccCChHHHHHH--------------------
Confidence 4577888888888888888887643211 01111122344444332
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcCCccccccccccccchhhhhhHHHHHhcCccccCCCCchhhhhhh
Q psy4183 262 AWALLFASLAAGLVRMFAPYACGSGIPEQNYSDVEGSSLVVYVGKSGHSSSKSCGRIMLAVSAGLSLRKGRTPWFTLRPC 341 (898)
Q Consensus 262 l~~~~~~~l~~~L~~~~~p~a~GsGIp~v~~~~l~G~~~~~~l~~~~~~~~K~l~~~ilav~sG~SlGrE~GP~v~iGa~ 341 (898)
+++.+.+++.+ +++.+ .+|+|+||+++ .+++. +++++++ .+.|.+++ ++++++|+|+||| ||++|+|++
T Consensus 46 --~~~ggl~~~l~-~~~~~-~~g~gi~~v~~-~~~~~---~~~~~~~-~~~k~~~~-~l~ig~G~s~G~E-GP~v~iGa~ 114 (388)
T cd01033 46 --LTVGGLIAGLG-WYLLR-RKGKKLVSIKQ-AVRGK---KRMPFWE-TIIHAVLQ-IVTVGLGAPLGRE-VAPREVGAL 114 (388)
T ss_pred --HHHHHHHHHHH-HHHHh-ccCCCcccHHH-HhcCC---CCCCHHH-HHHHHHHH-HhhhhcCCCcCcc-cHHHHHHHH
Confidence 33334444433 33333 36999999999 67753 4578888 88999999 9999999999999 999999999
Q ss_pred hhhhhccccccCCCCHHHHHHHHHHHHhhhhhhhccCccccceeEEeeeccccchhhHHHHHHHHHHHHHHHHHhccCCC
Q psy4183 342 IGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALIAAFVLRSINPFGN 421 (898)
Q Consensus 342 ig~~l~~~f~~~~~~~~~~r~lvaaGaAAGlaAaF~APLaGvlFalE~l~~~~~~~~l~~~~~as~va~~v~~~l~~~g~ 421 (898)
++++++|++| ++++|||++++||+|||+||+||||++|++|++||+.++++.+.++++++++++|+.+.+.+ +++
T Consensus 115 i~~~~~~~~~---~~~~~~r~li~~GaaAGlaa~F~aPlaG~lFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~--~g~ 189 (388)
T cd01033 115 LAQRFSDWLG---LTVADRRLLVACAAGAGLAAVYNVPLAGALFALEILLRTISLRSVVAALATSAIAAAVASLL--KGD 189 (388)
T ss_pred HHHHHHHHhC---CCHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh--CCC
Confidence 9999999987 78999999999999999999999999999999999999999999999999999999999988 677
Q ss_pred cceeeeeecccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCchhHHHHHHHHHhhheeccCcccccc
Q psy4183 422 EHSVLFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSRLGQYPVTEVLVITAITTLISFPNPFTRMS 501 (898)
Q Consensus 422 ~~~~~f~~~~~~~~~~~~l~~~lllGil~Gl~g~lF~~l~~~~~~~~~~~~~~~~p~~~~~l~glv~gll~~~~p~~~g~ 501 (898)
++. |.++. .++++.++++++++|+++|+++.+|++.+++.++++++. ++++++.++++++++++.++.|+..++
T Consensus 190 ~~~--f~~~~-~~~~~~~l~~~illGi~~Gl~~~lf~~~~~~~~~~~~~~---~~~~~~~~l~gl~~g~~~~~~p~~~G~ 263 (388)
T cd01033 190 HPI--YDIPP-MQLSTPLLIWALLAGPVLGVVAAGFRRLSQAARAKRPKG---KRILWQMPLAFLVIGLLSIFFPQILGN 263 (388)
T ss_pred Cce--eecCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cchHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 764 44432 233467889999999999999999999999988876532 234566778889999888888987776
Q ss_pred cCC-----CCCchhHHHHHHHHHHHHHHHHHHHhcccccccccchhhhhhhHHHHHHHHHHHHhhhhcCccchhccccCC
Q psy4183 502 TKA-----GPGVYTAVWLLMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECST 576 (898)
Q Consensus 502 g~~-----~~g~~~~~~~L~~~l~~K~l~t~ltlgsG~pGG~f~Psl~iGA~lG~l~G~l~~~l~~~~p~~~~~~~~~~~ 576 (898)
+.. -++. .....++.+++.|+++|++|+|+|.|||.|+|++++||++|+.+|+.++... |
T Consensus 264 G~~~i~~~~~~~-~~~~~ll~~~~~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~~~~~~---p----------- 328 (388)
T cd01033 264 GRALAQLAFSTT-LTLSLLLILLVLKIVATLLALRAGAYGGLLTPSLALGALLGALLGIVWNALL---P----------- 328 (388)
T ss_pred cHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHHHHHHhC---C-----------
Confidence 511 1111 2344567788999999999999999999999999999999999999887542 2
Q ss_pred CCCCChhHHHHHHHHHHHhhhhccchhhhhccccccccchhhHHHHHHHHHHHHHHHHHhhhc
Q psy4183 577 NDCITPGLYAMVGAAAVLGGVTRMTGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPI 639 (898)
Q Consensus 577 g~~i~p~~~alvGmaA~lag~~raPltaivl~~Eltg~~~~~~~~li~~~~AagiAa~f~apl 639 (898)
..++..|+++||+|++++++|+|+|++++++|+|+.+ .+.++|.++++.+|+.+++-+
T Consensus 329 --~~~~~~~a~~GmaA~laa~~~aPlt~ivl~~Eltg~~---~~~l~Pl~ia~~~a~~vs~~~ 386 (388)
T cd01033 329 --PLSIAAFALIGAAAFLAATQKAPLTALILVLEFTRQN---PLFLIPLMLAVAGAVAVSRFI 386 (388)
T ss_pred --cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHHHHHHHh
Confidence 3578899999999999999999999999999999932 899999999999999988654
No 9
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=100.00 E-value=4.2e-51 Score=487.04 Aligned_cols=401 Identities=21% Similarity=0.209 Sum_probs=315.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCCcccCCCCCchhhHHHHHhhccccccchhhhhH
Q psy4183 178 HTFYDSEEGSVAGIIDIGSSWMSDLKYGLCPEAFWLNKEQCCWSSNETSFEDTGNCSQWLTWAEVMGSNKEGFMAYTLEY 257 (898)
Q Consensus 178 ~~l~g~~vG~~a~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 257 (898)
.++.++++|+++|+...+++++.+..+++.++. ..+.++..... +|
T Consensus 24 ~~~~~~~vG~~~Gl~~~~f~~~~~~~~~~~~~~------------~~~~~~~~~~~-~~--------------------- 69 (574)
T PRK01862 24 MLIWSAIVGIGGAFATTAFREGIELIQHLISGH------------SGSFVEMAKSL-PW--------------------- 69 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------------cchHHHHhhcc-cH---------------------
Confidence 566777777777777777777777665432210 00011111111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcCCccccccccccccchhhhhhHHHHHhcCccccCCCCchhh
Q psy4183 258 VFFIAWALLFASLAAGLVRMFAPYACGSGIPEQNYSDVEGSSLVVYVGKSGHSSSKSCGRIMLAVSAGLSLRKGRTPWFT 337 (898)
Q Consensus 258 ~~~il~~~~~~~l~~~L~~~~~p~a~GsGIp~v~~~~l~G~~~~~~l~~~~~~~~K~l~~~ilav~sG~SlGrE~GP~v~ 337 (898)
.+..+.+++++.+++++.++..|..+++|++++++++.++ ++++++++ .+.|++++ ++++++|+|+||| ||++|
T Consensus 70 ~~~~~~p~~ggli~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~-~~~k~~~~-~l~i~~G~s~G~E-gP~v~ 143 (574)
T PRK01862 70 YVRVWLPAAGGFLAGCVLLLANRGARKGGKTDYMEAVALG---DGVVPVRQ-SLWRSASS-LLTIGSGGSIGRE-GPMVQ 143 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCCcHHHHHHHHcC---CCCCChHH-HHHHHHHH-HHHHHcCCCcCCc-chHHH
Confidence 1123345555555555555555555656666666646654 35677888 99999999 9999999999999 99999
Q ss_pred hhhhhhhhhccccccCCCCHHHHHHHHHHHHhhhhhhhccCccccceeEEeeeccccchhhHHHHHHHHHHHHHHHHHhc
Q psy4183 338 LRPCIGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALIAAFVLRSIN 417 (898)
Q Consensus 338 iGa~ig~~l~~~f~~~~~~~~~~r~lvaaGaAAGlaAaF~APLaGvlFalE~l~~~~~~~~l~~~~~as~va~~v~~~l~ 417 (898)
+|+++|++++|++| .+++++|++++||+|||+||+||||++|++|++|++.++++.++++++++|+++|+.+.+.+
T Consensus 144 ~ga~~~~~~~~~~~---~~~~~~r~l~~~G~aAglaa~F~aPl~g~lFa~E~~~~~~~~~~~~~~~~as~~a~~v~~~~- 219 (574)
T PRK01862 144 LAALAASLVGRFAH---FDPPRLRLLVACGAAAGITSAYNAPIAGAFFVAEIVLGSIAMESFGPLVVASVVANIVMREF- 219 (574)
T ss_pred HHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHH-
Confidence 99999999999987 78889999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCCcceeeeeecccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCchhHHHHHHHHHhhheeccCcc
Q psy4183 418 PFGNEHSVLFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSRLGQYPVTEVLVITAITTLISFPNPF 497 (898)
Q Consensus 418 ~~g~~~~~~f~~~~~~~~~~~~l~~~lllGil~Gl~g~lF~~l~~~~~~~~~~~~~~~~p~~~~~l~glv~gll~~~~p~ 497 (898)
+|+++. |.++...+++..++++++++|++||++|.+|++.+.+.++++++. +.+++++.++++++++++.++.|+
T Consensus 220 -~g~~~~--~~~~~~~~~~~~~~~~~~~lGv~~G~~~~~f~~~~~~~~~~~~~~--~~~~~~~~~~~gl~~g~l~~~~p~ 294 (574)
T PRK01862 220 -AGYQPP--YEMPVFPAVTGWEVLLFVALGVLCGAAAPQFLRLLDASKNQFKRL--PVPLPVRLALGGLLVGVISVWVPE 294 (574)
T ss_pred -cCCCce--eeCCCcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHH
Confidence 566654 445444557778999999999999999999999999988776543 234567888899999999999998
Q ss_pred cccccCC-----CCCchhHHHHHHHHHHHHHHHHHHHhcccccccccchhhhhhhHHHHHHHHHHHHhhhhcCccchhcc
Q psy4183 498 TRMSTKA-----GPGVYTAVWLLMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAG 572 (898)
Q Consensus 498 ~~g~g~~-----~~g~~~~~~~L~~~l~~K~l~t~ltlgsG~pGG~f~Psl~iGA~lG~l~G~l~~~l~~~~p~~~~~~~ 572 (898)
..+++.. .++. .....++.+++.|+++|++|+|+|.|||.|+|++++||++|+++|..++.+. |.
T Consensus 295 ~~g~G~~~i~~~~~~~-~~~~~l~~~~~~K~~~t~~t~g~G~~GG~f~P~l~iGa~~G~~~g~~~~~~~---~~------ 364 (574)
T PRK01862 295 VWGNGYSVVNTILHAP-WTWQALVAVLVAKLIATAATAGSGAVGGVFTPTLFVGAVVGSLFGLAMHALW---PG------ 364 (574)
T ss_pred HhcCCHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHccCCCccchhhHHHHHHHHHHHHHHHHHHhC---CC------
Confidence 8776611 1121 2333456678899999999999999999999999999999999999887643 21
Q ss_pred ccCCCCCCChhHHHHHHHHHHHhhhhccchhhhhccccccccchhhHHHHHHHHHHHHHHHHHhhhcc-cccccc
Q psy4183 573 ECSTNDCITPGLYAMVGAAAVLGGVTRMTGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIG-GVLFSL 646 (898)
Q Consensus 573 ~~~~g~~i~p~~~alvGmaA~lag~~raPltaivl~~Eltg~~~~~~~~li~~~~AagiAa~f~apl~-g~lF~l 646 (898)
...+|..|+++||+|++++++|+|+|++++++|+|++ .+.++|.++++.+|+.++.-+. ..+|..
T Consensus 365 -----~~~~~~~~a~vGmaa~~aa~~~aPlt~i~l~~Elt~~----~~~~~P~~ia~~~a~~v~~~~~~~~iy~~ 430 (574)
T PRK01862 365 -----HTSAPFAYAMVGMGAFLAGATQAPLMAILMIFEMTLS----YQVVLPLMVSCVVAYFTARALGTTSMYEI 430 (574)
T ss_pred -----cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHhCC----HhHHHHHHHHHHHHHHHHHHhCCCChHHH
Confidence 2346788999999999999999999999999999988 8999999999999999998775 456654
No 10
>cd01031 EriC ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.
Probab=100.00 E-value=7.2e-51 Score=465.24 Aligned_cols=391 Identities=26% Similarity=0.355 Sum_probs=327.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCCcccCCCCCchhhHHHHHhhccccccchhhhhHHHHH
Q psy4183 182 DSEEGSVAGIIDIGSSWMSDLKYGLCPEAFWLNKEQCCWSSNETSFEDTGNCSQWLTWAEVMGSNKEGFMAYTLEYVFFI 261 (898)
Q Consensus 182 g~~vG~~a~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~i 261 (898)
|+++|+++.+++...+++++++.+...+ .. ..+ ..+..+.
T Consensus 2 Gi~~G~~~~~f~~~i~~~~~~~~~~~~~--------------------~~--~~~------------------~~~~~~~ 41 (402)
T cd01031 2 GLLAGLVAVLFRLGIDKLGNLRLSLYDF--------------------AA--NNP------------------PLLLVLP 41 (402)
T ss_pred eehHhHHHHHHHHHHHHHHHHHHHHHHh--------------------cc--ccc------------------HHHHHHH
Confidence 6788999999999999999987542110 00 001 1223345
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcCCccccccccccccchhhhhhHHHHHhcCccccCCCCchhhhhhh
Q psy4183 262 AWALLFASLAAGLVRMFAPYACGSGIPEQNYSDVEGSSLVVYVGKSGHSSSKSCGRIMLAVSAGLSLRKGRTPWFTLRPC 341 (898)
Q Consensus 262 l~~~~~~~l~~~L~~~~~p~a~GsGIp~v~~~~l~G~~~~~~l~~~~~~~~K~l~~~ilav~sG~SlGrE~GP~v~iGa~ 341 (898)
+++.+++.+++++++++.|+++|+|+||+++ .++|.. +..++++ .+.|++++ ++++++|+|+||| ||.+|+|++
T Consensus 42 ~~~~~~g~~~~~l~~~~~p~~~g~G~~~v~~-~l~~~~--~~~~~~~-~~~k~~~~-~l~~gsG~s~G~E-gP~v~iga~ 115 (402)
T cd01031 42 LISAVLGLLAGWLVKKFAPEAKGSGIPQVEG-VLAGLL--PPNWWRV-LPVKFVGG-VLALGSGLSLGRE-GPSVQIGAA 115 (402)
T ss_pred HHHHHHHHHHHHHHHhcCCccCCCCHHHHHH-HHcCCC--CcccHHH-HHHHHHHH-HHHHhcCCCCCCC-CcHHHHHHH
Confidence 6677888888899998899999999999999 777743 3455667 99999999 9999999999999 999999999
Q ss_pred hhhhhccccccCCCCHHHHHHHHHHHHhhhhhhhccCccccceeEEeeeccccchhhHHHHHHHHHHHHHHHHHhccCCC
Q psy4183 342 IGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALIAAFVLRSINPFGN 421 (898)
Q Consensus 342 ig~~l~~~f~~~~~~~~~~r~lvaaGaAAGlaAaF~APLaGvlFalE~l~~~~~~~~l~~~~~as~va~~v~~~l~~~g~ 421 (898)
+|++++|++| .+++++|++++||+|||++++||||++|++|++||+.++++.+.+++.++++++|+++.+.+ +++
T Consensus 116 ig~~~~~~~~---~~~~~~~~l~~~g~aag~aa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~a~~~a~~v~~~~--~~~ 190 (402)
T cd01031 116 IGQGVSKWFK---TSPEERRQLIAAGAAAGLAAAFNAPLAGVLFVLEELRHSFSPLALLTALVASIAADFVSRLF--FGL 190 (402)
T ss_pred HHHHHHHHhc---CCHHHHHHHHHHHHHHhHHHHhCCccHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHH--cCC
Confidence 9999999887 67889999999999999999999999999999999999999999999999999999999987 566
Q ss_pred cceeeeeecccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCchhHHHHHHHHHhhheeccCcccccc
Q psy4183 422 EHSVLFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSRLGQYPVTEVLVITAITTLISFPNPFTRMS 501 (898)
Q Consensus 422 ~~~~~f~~~~~~~~~~~~l~~~lllGil~Gl~g~lF~~l~~~~~~~~~~~~~~~~p~~~~~l~glv~gll~~~~p~~~g~ 501 (898)
++. +..+....++..|+++++++|+++|++|.+|++.+++.++++++.+ +.++.++..+++++++++.++.|+..++
T Consensus 191 ~~~--~~~~~~~~~~~~~l~~~illGv~~G~~g~~f~~~~~~~~~~~~~~~-~~~~~~~~~l~gl~~~~~~~~~p~~~g~ 267 (402)
T cd01031 191 GPV--LSIPPLPALPLKSYWLLLLLGIIAGLLGYLFNRSLLKSQDLYRKLK-KLPRELRVLLPGLLIGPLGLLLPEALGG 267 (402)
T ss_pred Cce--EecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCChhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 653 4444444577889999999999999999999999999988876531 3456778889999999999889988777
Q ss_pred cCC-----CCCchhHHHHHHHHHHHHHHHHHHHhcccccccccchhhhhhhHHHHHHHHHHHHhhhhcCccchhccccCC
Q psy4183 502 TKA-----GPGVYTAVWLLMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECST 576 (898)
Q Consensus 502 g~~-----~~g~~~~~~~L~~~l~~K~l~t~ltlgsG~pGG~f~Psl~iGA~lG~l~G~l~~~l~~~~p~~~~~~~~~~~ 576 (898)
+.. .++. .....++..++.|+++|.+|+++|.+||.|+|++++||++|+++|++++.+. |
T Consensus 268 G~~~i~~~~~~~-~~~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~g~~~~~~~---~----------- 332 (402)
T cd01031 268 GHGLILSLAGGN-FSISLLLLIFVLRFIFTMLSYGSGAPGGIFAPMLALGALLGLLFGTILVQLG---P----------- 332 (402)
T ss_pred HHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhc---C-----------
Confidence 611 1221 2344566788999999999999999999999999999999999999987653 2
Q ss_pred CCCCChhHHHHHHHHHHHhhhhccchhhhhccccccccchhhHHHHHHHHHHHHHHHHHhhhc-cccccc
Q psy4183 577 NDCITPGLYAMVGAAAVLGGVTRMTGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPI-GGVLFS 645 (898)
Q Consensus 577 g~~i~p~~~alvGmaA~lag~~raPltaivl~~Eltg~~~~~~~~li~~~~AagiAa~f~apl-~g~lF~ 645 (898)
....+|..|+++||+|++++++|+|+|++++++|+|++ .+.++|+++++.+|+.+++.+ ...+|+
T Consensus 333 ~~~~~~~~~a~~G~aa~~a~~~~aPlta~vl~~Eltg~----~~~l~p~~ia~~ia~~v~~~~~~~siY~ 398 (402)
T cd01031 333 IPISAPATFAIAGMAAFFAAVVRAPITAIILVTEMTGN----FNLLLPLMVVCLVAYLVADLLGGKPIYE 398 (402)
T ss_pred cccccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhCC----HhHHHHHHHHHHHHHHHHHHhCCCChhH
Confidence 13578999999999999999999999999999999997 899999999999999999887 445554
No 11
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4e-50 Score=461.83 Aligned_cols=351 Identities=25% Similarity=0.370 Sum_probs=298.0
Q ss_pred HHHHHHHHH-HHHHHhcCCCCCCChhhhhhhhhcCCccccccccccccchhhhhhHHHHHhcCccccCCCCchhhhhhhh
Q psy4183 264 ALLFASLAA-GLVRMFAPYACGSGIPEQNYSDVEGSSLVVYVGKSGHSSSKSCGRIMLAVSAGLSLRKGRTPWFTLRPCI 342 (898)
Q Consensus 264 ~~~~~~l~~-~L~~~~~p~a~GsGIp~v~~~~l~G~~~~~~l~~~~~~~~K~l~~~ilav~sG~SlGrE~GP~v~iGa~i 342 (898)
+...+.+++ ++++++.|+++|||+||+++ .+++. +++++++. .++|.+++ ++++++|+|+||| ||++|+|+++
T Consensus 70 ~~~~gl~~g~~~~~~~~p~~~g~Gi~~~i~-a~~~~--~~~~~~~~-~~vk~~~~-~l~i~sG~s~GrE-GP~vqiga~~ 143 (443)
T COG0038 70 PALGGLLVGALLVYKFAPEARGSGIPQAIE-ALHGR--KGRISPRV-LPVKLVAT-LLTIGSGASLGRE-GPSVQIGAAI 143 (443)
T ss_pred HHHHHHHHHHHHHHHhCccccCCChhHHHH-HHhcC--CCcccHHH-HHHHHHHH-HHHHhcCcccccc-cHHHHHHHHH
Confidence 344455555 78889999999999999999 56653 45677777 89999999 9999999999999 9999999999
Q ss_pred hhhhccccccCCCCHHHHHHHHHHHHhhhhhhhccCccccceeEEeeeccc-cchhhHHHHHHHHHHHHHHHHHhccCCC
Q psy4183 343 GNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSYY-FPLKTLWRSFFCALIAAFVLRSINPFGN 421 (898)
Q Consensus 343 g~~l~~~f~~~~~~~~~~r~lvaaGaAAGlaAaF~APLaGvlFalE~l~~~-~~~~~l~~~~~as~va~~v~~~l~~~g~ 421 (898)
++.++|++| .+++|||++++||+|||+||+||||++|++|++||+.++ ++.++++++++++++|..+.+.+ .+.
T Consensus 144 g~~~~~~l~---~~~~~~r~Ll~~GaAaGlaaaF~aPlagvlF~~E~l~~~~~~~~~l~p~~vaa~va~~v~~~~--~~~ 218 (443)
T COG0038 144 GSLLGRLLK---LSREDRRILLAAGAAAGLAAAFNAPLAGALFAIEVLYGRFLEYRALVPVLVAAVVALLVAGLF--GGP 218 (443)
T ss_pred HHHHHHHhC---CCHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHc--CCC
Confidence 999999997 789999999999999999999999999999999999987 99999999999999999999987 332
Q ss_pred cceeeeeecccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCchhHHHHHHHHHhhheeccCcccccc
Q psy4183 422 EHSVLFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSRLGQYPVTEVLVITAITTLISFPNPFTRMS 501 (898)
Q Consensus 422 ~~~~~f~~~~~~~~~~~~l~~~lllGil~Gl~g~lF~~l~~~~~~~~~~~~~~~~p~~~~~l~glv~gll~~~~p~~~g~ 501 (898)
++ .+.......++.++++.++++|+++|++|.+|.+.....++++++.+ ..++++.++++++++.+.+..|+..++
T Consensus 219 ~~--~~~~~~~~~~~~~~~~~~~~lGii~G~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~l~g~~~l~~P~~lg~ 294 (443)
T COG0038 219 HF--LLPIVTTPHMSLWDLLLYLVLGIIAGLFGVLLSRLLALSRRFFRRLP--LPPLLRPALGGLLVGALGLLFPEVLGN 294 (443)
T ss_pred Cc--eeeccccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--chHHHHHHHHHHHHHHHHHhchhhhCC
Confidence 32 23333344567789999999999999999999999977766666543 346789999999999999999999877
Q ss_pred cCC-----CCCchhHHHH-HHHHHHHHHHHHHHHhcccccccccchhhhhhhHHHHHHHHHHHHhhhhcCccchhccccC
Q psy4183 502 TKA-----GPGVYTAVWL-LMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECS 575 (898)
Q Consensus 502 g~~-----~~g~~~~~~~-L~~~l~~K~l~t~ltlgsG~pGG~f~Psl~iGA~lG~l~G~l~~~l~~~~p~~~~~~~~~~ 575 (898)
+.. .++. .... +..+++.|.+.|++|+|+|.|||+|.|++++|+++|.++|..++... |
T Consensus 295 G~~~~~~~~~~~--~~~~~l~~l~~~K~l~t~~s~gSG~~GGif~Psl~iGa~lG~~~g~~~~~~~---~---------- 359 (443)
T COG0038 295 GYGLIQLALAGE--GGLLVLLLLFLLKLLATLLSYGSGAPGGIFAPSLFIGAALGLAFGALLGLLF---P---------- 359 (443)
T ss_pred CccHHHHHHccC--ccHHHHHHHHHHHHHHHHHHHhcCCCcceehHHHHHHHHHHHHHHHHHHhhc---C----------
Confidence 621 1121 1122 67789999999999999999999999999999999999998887642 2
Q ss_pred CCCCCChhHHHHHHHHHHHhhhhccchhhhhccccccccchhhHHHHHHHHHHHHHHHHHhhhccccccccccc
Q psy4183 576 TNDCITPGLYAMVGAAAVLGGVTRMTGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEV 649 (898)
Q Consensus 576 ~g~~i~p~~~alvGmaA~lag~~raPltaivl~~Eltg~~~~~~~~li~~~~AagiAa~f~apl~g~lF~lE~l 649 (898)
....+|..|+++||++++++++|+|+|++++++|+|++ .+.++++++++.+|+.++....+..+.-+..
T Consensus 360 -~~~~~~~~~al~Gm~a~la~~~~aPlta~vlv~EmTg~----~~~~l~ll~a~~ia~~~~~~~~~~~~~~~~~ 428 (443)
T COG0038 360 -PSILEPGLFALLGMAAFLAATTRAPLTAIVLVLEMTGN----YQLLLPLLIACLIAYLVSRLLGGRPIYTQLL 428 (443)
T ss_pred -ccccchHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCC----cchHHHHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 12467889999999999999999999999999999998 8999999999999999999887655544433
No 12
>PRK05277 chloride channel protein; Provisional
Probab=100.00 E-value=5.3e-50 Score=462.54 Aligned_cols=398 Identities=24% Similarity=0.345 Sum_probs=318.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCCcccCCCCCchhhHHHHHhhccccccchhhhh
Q psy4183 177 LHTFYDSEEGSVAGIIDIGSSWMSDLKYGLCPEAFWLNKEQCCWSSNETSFEDTGNCSQWLTWAEVMGSNKEGFMAYTLE 256 (898)
Q Consensus 177 ~~~l~g~~vG~~a~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 256 (898)
...++|+++|+++.+++..++++++++.+.+.+ . +..+|. .
T Consensus 3 ~~i~iGi~~Gl~~~~f~~~~~~~~~~~~~~~~~-----------------~----~~~~~~------------------~ 43 (438)
T PRK05277 3 MAAVVGTLTGLVGVAFELAVDWVQNQRLGLLAS-----------------V----ADNGLL------------------L 43 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------h----cccchH------------------H
Confidence 356778888888888888888888876442110 0 011121 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcCCccccccccccccchhhhhhHHHHHhcCccccCCCCchh
Q psy4183 257 YVFFIAWALLFASLAAGLVRMFAPYACGSGIPEQNYSDVEGSSLVVYVGKSGHSSSKSCGRIMLAVSAGLSLRKGRTPWF 336 (898)
Q Consensus 257 ~~~~il~~~~~~~l~~~L~~~~~p~a~GsGIp~v~~~~l~G~~~~~~l~~~~~~~~K~l~~~ilav~sG~SlGrE~GP~v 336 (898)
+..+++.+.+++.+++++++|+.|+++|+|+||+++ .+++.+ .+++++.++.|++++ ++++++|+|+||| ||++
T Consensus 44 ~~~~~~~~~~~~~i~~~l~~~~~p~~~GsGi~~i~~-~l~~~~---~~~~~~~~~~k~~~~-~l~~gsG~s~G~E-gP~v 117 (438)
T PRK05277 44 WIVAFLISAVLAMIGYFLVRRFAPEAGGSGIPEIEG-ALEGLR---PVRWWRVLPVKFFGG-LGTLGSGMVLGRE-GPTV 117 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHH-HHcCCC---ccchHHHHHHHHHHH-HHHHhcCCCCCCC-CcHH
Confidence 233445667777888899999999999999999999 777643 244333388999999 9999999999999 9999
Q ss_pred hhhhhhhhhhccccccCCC-CHHHHHHHHHHHHhhhhhhhccCccccceeEEeeeccc--cchhhHHHHHHHHHHHHHHH
Q psy4183 337 TLRPCIGNILSYLFPKYGR-NEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSYY--FPLKTLWRSFFCALIAAFVL 413 (898)
Q Consensus 337 ~iGa~ig~~l~~~f~~~~~-~~~~~r~lvaaGaAAGlaAaF~APLaGvlFalE~l~~~--~~~~~l~~~~~as~va~~v~ 413 (898)
|+|+++|++++|++| . +++++|++++||+|||++++||||++|++|++||+.++ ++.+.++++++++++|+.+.
T Consensus 118 ~iGa~ig~~~~~~~~---~~~~~~~~~li~~G~aaglaa~f~APl~g~lf~~E~~~~~~~~~~~~~~~~~~a~~~a~~v~ 194 (438)
T PRK05277 118 QMGGNIGRMVLDIFR---LRSDEARHTLLAAGAAAGLAAAFNAPLAGILFVIEEMRPQFRYSLISIKAVFIGVIMATIVF 194 (438)
T ss_pred HHHHHHHHHHHHHcc---cCCHHHHHHHHHHHHHHhHHHhcCCchHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHH
Confidence 999999999999987 4 78899999999999999999999999999999999874 47778999999999999999
Q ss_pred HHhccCCCcceeeeeecccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc--CCchhHHHHHHHHHhhhe
Q psy4183 414 RSINPFGNEHSVLFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSRL--GQYPVTEVLVITAITTLI 491 (898)
Q Consensus 414 ~~l~~~g~~~~~~f~~~~~~~~~~~~l~~~lllGil~Gl~g~lF~~l~~~~~~~~~~~~~--~~~p~~~~~l~glv~gll 491 (898)
+.+ .++++. +..+....++..++++++++|+++|++|.+|++.+.+.++++++.+. .+++++...+++++++++
T Consensus 195 ~~~--~g~~~~--~~~~~~~~~~~~~l~~~i~lGi~~G~~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gl~~g~l 270 (438)
T PRK05277 195 RLF--NGEQAV--IEVGKFSAPPLNTLWLFLLLGIIFGIFGVLFNKLLLRTQDLFDRLHGGNKKRWVLMGGAVGGLCGLL 270 (438)
T ss_pred HHh--cCCCce--EeccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHH
Confidence 987 566553 34433333556789999999999999999999999998887665321 112234556778888888
Q ss_pred eccCcccccccC-----CCCCchhHHHHHHHHHHHHHHHHHHHhcccccccccchhhhhhhHHHHHHHHHHHHhhhhcCc
Q psy4183 492 SFPNPFTRMSTK-----AGPGVYTAVWLLMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPH 566 (898)
Q Consensus 492 ~~~~p~~~g~g~-----~~~g~~~~~~~L~~~l~~K~l~t~ltlgsG~pGG~f~Psl~iGA~lG~l~G~l~~~l~~~~p~ 566 (898)
.++.|+..+++. ..++. .....++..++.|+++|++|+++|.|||.|+|++++||++|+.+|.+++... |+
T Consensus 271 ~~~~p~~~g~G~~~i~~~~~~~-~~~~~l~~~~~~K~i~t~ls~gsG~~GG~f~Psl~iGa~~G~~~g~~~~~~~---p~ 346 (438)
T PRK05277 271 GLLAPAAVGGGFNLIPIALAGN-FSIGMLLFIFVARFITTLLCFGSGAPGGIFAPMLALGTLLGLAFGMVAAALF---PQ 346 (438)
T ss_pred HHHhhhhcCChHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHc---Cc
Confidence 888898777661 11222 2334566778999999999999999999999999999999999999887642 31
Q ss_pred cchhccccCCCCCCChhHHHHHHHHHHHhhhhccchhhhhccccccccchhhHHHHHHHHHHHHHHHHHhhhccc-cccc
Q psy4183 567 IWIFAGECSTNDCITPGLYAMVGAAAVLGGVTRMTGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGG-VLFS 645 (898)
Q Consensus 567 ~~~~~~~~~~g~~i~p~~~alvGmaA~lag~~raPltaivl~~Eltg~~~~~~~~li~~~~AagiAa~f~apl~g-~lF~ 645 (898)
...+|..|+++||+|++++++|+|+|++++++|+|++ .+.++|.++++.+|+.+++.++. .+|.
T Consensus 347 -----------~~~~~~~~a~~G~aA~la~~~~aPlt~~v~~~Eltg~----~~~l~p~lia~~~A~~v~~~~~~~~iy~ 411 (438)
T PRK05277 347 -----------YHIEPGTFAIAGMGALFAATVRAPLTGIVLVLEMTDN----YQLILPLIITCLGATLLAQFLGGKPIYS 411 (438)
T ss_pred -----------ccccHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCC----hhhHHHHHHHHHHHHHHHHHhCCCChHH
Confidence 3578999999999999999999999999999999997 89999999999999999987753 3443
No 13
>cd01034 EriC_like ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=2.7e-50 Score=458.50 Aligned_cols=342 Identities=24% Similarity=0.267 Sum_probs=283.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcCC---ccccccccccccchhhhhhHHHHHhcCccccCCCCchhhh
Q psy4183 262 AWALLFASLAAGLVRMFAPYACGSGIPEQNYSDVEGS---SLVVYVGKSGHSSSKSCGRIMLAVSAGLSLRKGRTPWFTL 338 (898)
Q Consensus 262 l~~~~~~~l~~~L~~~~~p~a~GsGIp~v~~~~l~G~---~~~~~l~~~~~~~~K~l~~~ilav~sG~SlGrE~GP~v~i 338 (898)
+.++ ++.+++++++|+.|+++||||||+++ .+++. +.++++++|+ .+.|++++ ++++++|+|+||| ||++|+
T Consensus 32 ~~p~-~~~~~~~~~~~~~p~~~gsGi~~v~~-~~~~~~~~~~~~~~~~r~-~~~k~i~~-~l~i~~G~s~GrE-GP~v~i 106 (390)
T cd01034 32 LTPA-GFALIAWLTRRFFPGAAGSGIPQVIA-ALELPSAAARRRLLSLRT-AVGKILLT-LLGLLGGASVGRE-GPSVQI 106 (390)
T ss_pred HHHH-HHHHHHHHHHhhCCCCCCCCHHHHHH-HHcccccccccccccHHH-HHHHHHHH-HHHHHcCCCcCCc-ccHHHH
Confidence 3344 45677788888999999999999999 66542 2456788888 99999999 9999999999999 999999
Q ss_pred hhhhhhhhccccccCCCCHHHHHHHHHHHHhhhhhhhccCccccceeEEeeeccccchhhHHHHHHHHHHHHHHHHHhcc
Q psy4183 339 RPCIGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALIAAFVLRSINP 418 (898)
Q Consensus 339 Ga~ig~~l~~~f~~~~~~~~~~r~lvaaGaAAGlaAaF~APLaGvlFalE~l~~~~~~~~l~~~~~as~va~~v~~~l~~ 418 (898)
|++++++++|++|. .+++|||++++||+|||+||+||||++|++|++||+.++++.+..++.++++++|+++.+.+
T Consensus 107 ga~i~~~~~~~~~~--~~~~~~r~li~~GaaAGlaa~F~aPlaG~lF~~E~~~~~~~~~~~~~~~~~~~~a~~~~~~~-- 182 (390)
T cd01034 107 GAAVMLAIGRRLPK--WGGLSERGLILAGGAAGLAAAFNTPLAGIVFAIEELSRDFELRFSGLVLLAVIAAGLVSLAV-- 182 (390)
T ss_pred HHHHHHHHHHHccc--CchHHHHHHHHHHHHHhHHHHhCCcchhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH--
Confidence 99999999999872 24789999999999999999999999999999999999999999999999999999998877
Q ss_pred CCCcceeeeeecccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc---ccCCchhHHHHHHHHHhhheeccC
Q psy4183 419 FGNEHSVLFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMS---RLGQYPVTEVLVITAITTLISFPN 495 (898)
Q Consensus 419 ~g~~~~~~f~~~~~~~~~~~~l~~~lllGil~Gl~g~lF~~l~~~~~~~~~~~---~~~~~p~~~~~l~glv~gll~~~~ 495 (898)
+++++. |..+....+++.++++++++|+++|++|.+|++.+.+.++.+++. +...++++...+.+++++++.++.
T Consensus 183 ~g~~~~--f~~~~~~~~~~~~~~~~illGii~G~~g~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~ 260 (390)
T cd01034 183 LGNYPY--FGVAAVALPLGEAWLLVLVCGVVGGLAGGLFARLLVALSSGLPGWVRRFRRRRPVLFAALCGLALALIGLVS 260 (390)
T ss_pred cCCCCc--cCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHhC
Confidence 677664 333322335567889999999999999999999998888776543 123456677777888888877766
Q ss_pred c-ccccccC-----CCCCchhHHHHHHHHHHHHHHHHHHHhcccccccccchhhhhhhHHHHHHHHHHHHhhhhcCccch
Q psy4183 496 P-FTRMSTK-----AGPGVYTAVWLLMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWI 569 (898)
Q Consensus 496 p-~~~g~g~-----~~~g~~~~~~~L~~~l~~K~l~t~ltlgsG~pGG~f~Psl~iGA~lG~l~G~l~~~l~~~~p~~~~ 569 (898)
| +..+++. ..++.. ......++.|+++|.+|+++|.|||+|+|++++||++|++++++++
T Consensus 261 ~~~~~G~G~~~i~~~~~~~~---~~~~~~~l~K~i~t~lt~gsG~~gG~f~P~l~iGa~~G~~~~~~~~----------- 326 (390)
T cd01034 261 GGLTFGTGYLQARAALEGGG---GLPLWFGLLKFLATLLSYWSGIPGGLFAPSLAVGAGLGSLLAALLG----------- 326 (390)
T ss_pred CCccccCcHHHHHHHHhCCC---cccHHHHHHHHHHHHHHHHcCCCcceechHHHHHHHHHHHHHHHhc-----------
Confidence 5 3333331 001111 1223567899999999999999999999999999999999997642
Q ss_pred hccccCCCCCCChhHHHHHHHHHHHhhhhccchhhhhccccccccchhhHHHHHHHHHHHHHHHHHhhhccc
Q psy4183 570 FAGECSTNDCITPGLYAMVGAAAVLGGVTRMTGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGG 641 (898)
Q Consensus 570 ~~~~~~~g~~i~p~~~alvGmaA~lag~~raPltaivl~~Eltg~~~~~~~~li~~~~AagiAa~f~apl~g 641 (898)
..+|..|+++||+|++++++|+|+|++++++|+|++ .+.++|+++++.+|+.+++.+..
T Consensus 327 ---------~~~~~~~a~~G~aA~laa~~~aPlt~~vl~~Elt~~----~~~l~p~lia~~~A~~v~~~~~~ 385 (390)
T cd01034 327 ---------SVSQGALVLLGMAAFLAGVTQAPLTAFVIVMEMTGD----QQMLLPLLAAALLASGVSRLVCP 385 (390)
T ss_pred ---------CCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHhCC----hhhHHHHHHHHHHHHHHHHHhCC
Confidence 147899999999999999999999999999999997 89999999999999999987753
No 14
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease.; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....
Probab=100.00 E-value=7.8e-51 Score=457.60 Aligned_cols=341 Identities=31% Similarity=0.467 Sum_probs=278.9
Q ss_pred HHHHHHHHHHHhcCCCCCCChhhhhhhhhcCCccccccccccccchhhhhhHHHHHhcCccccCCCCchhhhhhhhhhhh
Q psy4183 267 FASLAAGLVRMFAPYACGSGIPEQNYSDVEGSSLVVYVGKSGHSSSKSCGRIMLAVSAGLSLRKGRTPWFTLRPCIGNIL 346 (898)
Q Consensus 267 ~~~l~~~L~~~~~p~a~GsGIp~v~~~~l~G~~~~~~l~~~~~~~~K~l~~~ilav~sG~SlGrE~GP~v~iGa~ig~~l 346 (898)
++.+++++++++.|+++|+||||+++ .+++. ++++++|+ .+.|++++ ++++++|+|+||| ||++|+|+++++++
T Consensus 2 ~~~~~~~l~~~~~p~~~g~Gi~~v~~-~~~~~--~~~~~~~~-~~~k~~~~-~~s~~~G~s~G~E-Gp~v~iga~i~~~~ 75 (355)
T PF00654_consen 2 GGLLSGLLWKKFAPEAAGSGIPEVKA-ALRGK--SGRLPFRT-LPVKFVGS-ILSLGSGLSVGRE-GPSVQIGAAIGSWL 75 (355)
T ss_dssp HHHHHHHHHHHC-GGGSB-SHHHHHH-HCTTS--S---HHHH-HHHHHHHH-HHHHHTT-S-BSH-HHHHHHHHHHHHHH
T ss_pred EEEEeeHHHHHHCCccCCCCHHHHHH-HHhCC--CCCCCHHH-HHHHHHHH-HHHHhcCCCCcCc-cHHHHHHHHHHHHH
Confidence 46778889999999999999999999 77764 34588888 99999999 9999999999999 99999999999999
Q ss_pred ccccccCCCCHHH-HHHHHHHHHhhhhhhhccCccccceeEEeeeccccchhhHHHHHHHHHHHHHHHHHhccCCCccee
Q psy4183 347 SYLFPKYGRNEAK-KREILSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALIAAFVLRSINPFGNEHSV 425 (898)
Q Consensus 347 ~~~f~~~~~~~~~-~r~lvaaGaAAGlaAaF~APLaGvlFalE~l~~~~~~~~l~~~~~as~va~~v~~~l~~~g~~~~~ 425 (898)
+|++| .++++ +|++++||+|||+||+||||++|++|++|++.++++.+.++++++++++|+++++.+ +++++.
T Consensus 76 ~~~~~---~~~~~~~r~l~~~g~aAglaa~F~aPlaG~lFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~--~~~~~~- 149 (355)
T PF00654_consen 76 GRRFR---LSRNETRRLLLAAGAAAGLAAAFNAPLAGVLFALEELSRDFSVRLLLPALVASIVATLVSRLL--FGNHPI- 149 (355)
T ss_dssp HHHTT-----CHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHCCTCHCCSTTTHHHHHHHHHHHHHHHHHH--HTSS-S-
T ss_pred HHhhc---ccchHHHhHHHHHHHHHHHHHHhcCCcccceehhheeeccccchhhHHHHHHHHHHHHHHHHH--cCcCcc-
Confidence 99986 45555 888999999999999999999999999999999999999999999999999999988 566654
Q ss_pred eee-ecccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-cCCchhHHHHHHHHHhhheeccCcc--cccc
Q psy4183 426 LFY-VEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSR-LGQYPVTEVLVITAITTLISFPNPF--TRMS 501 (898)
Q Consensus 426 ~f~-~~~~~~~~~~~l~~~lllGil~Gl~g~lF~~l~~~~~~~~~~~~-~~~~p~~~~~l~glv~gll~~~~p~--~~g~ 501 (898)
|. ++...++++.|+++++++|++||++|.+|++.+++.++++++.+ .+++++++.++.+++++++.++.|+ ..++
T Consensus 150 -f~~~~~~~~~~~~~~~~~~llGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~l~~~i~gl~~g~l~~~~p~~~~~g~ 228 (355)
T PF00654_consen 150 -FGSVPQLFPFSLWELPLFLLLGIICGLLGALFNRLLRWLRKFFRKLKRLKIPPILRPVIGGLVIGLLAFFFPEGSVLGS 228 (355)
T ss_dssp -S---TT-----GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHSSGG-SGSSS
T ss_pred -cccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHhhhcccCC
Confidence 44 44444788899999999999999999999999999998777542 2344567999999999999999998 7776
Q ss_pred cCC-----CCCc--hhHHHHHHHHHHHHHHHHHHHhcccccccccchhhhhhhHHHHHHHHHHHHhhhhcCccchhcccc
Q psy4183 502 TKA-----GPGV--YTAVWLLMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGEC 574 (898)
Q Consensus 502 g~~-----~~g~--~~~~~~L~~~l~~K~l~t~ltlgsG~pGG~f~Psl~iGA~lG~l~G~l~~~l~~~~p~~~~~~~~~ 574 (898)
+.. -++. ......++.+++.|+++|.+|+++|.|||.|.|++++|+++|++++.+++... |+.
T Consensus 229 G~~~i~~ll~~~~~~~~~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~~~~~~~~~---~~~------- 298 (355)
T PF00654_consen 229 GYELIQSLLSGSPPWFSLGSLLLLFLLKFLATALTLGSGAPGGIFFPSLFIGAALGRLFGALLGSFF---PGI------- 298 (355)
T ss_dssp STTHHHHHCTT----S-HHHHHHHHHHHHHHHHHHHHTT-BSBSHHHHHHHHHHHHHHHHHHHHHH----GGG-------
T ss_pred cHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhcCccCCCCEEccHHHHHHHHHHHHHHHHHhhC---CCc-------
Confidence 621 1221 23566788899999999999999999999999999999999999999988753 211
Q ss_pred CCCCCCChhHHHHHHHHHHHhhhhccchhhhhccccccccchhhHHHHHHHHHHHHHHHHHhh
Q psy4183 575 STNDCITPGLYAMVGAAAVLGGVTRMTGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGA 637 (898)
Q Consensus 575 ~~g~~i~p~~~alvGmaA~lag~~raPltaivl~~Eltg~~~~~~~~li~~~~AagiAa~f~a 637 (898)
...+|+.|+++||+|++++++|+|++++++++|+|++ .+.++|+++++.+|+.+++
T Consensus 299 ---~~~~~~~~al~G~~a~~~a~~~~Plt~~vl~~Eltg~----~~~~~p~lia~~~a~~v~~ 354 (355)
T PF00654_consen 299 ---SSVDPGVYALVGMAAFLAAVTRAPLTAIVLVLELTGD----FQLLLPLLIAVAVAYLVAR 354 (355)
T ss_dssp ----T-SHHHHHHHHTTHHHHHHCS-HHHHHHHHHHHH------GGGHHHHHHHHHHHHHHHH
T ss_pred ---CCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHhC
Confidence 1247999999999999999999999999999999997 8999999999999998875
No 15
>KOG0476|consensus
Probab=100.00 E-value=5.1e-50 Score=455.05 Aligned_cols=419 Identities=27% Similarity=0.422 Sum_probs=337.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCCcccCCCCCchhhHHHHHhhccccccchhhhh
Q psy4183 177 LHTFYDSEEGSVAGIIDIGSSWMSDLKYGLCPEAFWLNKEQCCWSSNETSFEDTGNCSQWLTWAEVMGSNKEGFMAYTLE 256 (898)
Q Consensus 177 ~~~l~g~~vG~~a~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 256 (898)
++.++|+++.+++..+|..+..+++...+. |++.+ .....+.
T Consensus 98 flalLG~imAlvS~~mD~ai~~~~~a~~~l--------------------y~~~~------------------~~~~yl~ 139 (931)
T KOG0476|consen 98 FLALLGVIMALVSIGMDMAIESLQHAQVWL--------------------YRELG------------------SSHSYLA 139 (931)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHhc------------------cchhHHH
Confidence 566678788777777777777777653211 11111 1123357
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcCCccccccccccccchhhhhhHHHHHhcCccccCCCCchh
Q psy4183 257 YVFFIAWALLFASLAAGLVRMFAPYACGSGIPEQNYSDVEGSSLVVYVGKSGHSSSKSCGRIMLAVSAGLSLRKGRTPWF 336 (898)
Q Consensus 257 ~~~~il~~~~~~~l~~~L~~~~~p~a~GsGIp~v~~~~l~G~~~~~~l~~~~~~~~K~l~~~ilav~sG~SlGrE~GP~v 336 (898)
|+.|+.+++.+..+++..++.++|++-||||||||. +++|+..++|+..|+ ++.|.++. .+++|||+++||| ||.|
T Consensus 140 yl~Wv~y~v~Li~fSA~f~h~iapQAvGSGIPEmKt-IlrGv~LkeYLt~Kt-lvAKviGL-T~tLGsGlpiGKe-GPFV 215 (931)
T KOG0476|consen 140 YLSWVGYPVGLVLFSAGFCHYIAPQAVGSGIPEMKT-ILRGVILKEYLTLKT-LVAKVIGL-TLTLGSGLPIGKE-GPFV 215 (931)
T ss_pred HHHHHHHHHHHHHHHHHHHheeccccccCCChhHHH-HHHhhhHHhhhhHHH-HHHHHHHh-hhhhccCCCcCCC-CCch
Confidence 778999999999999999999999999999999999 999999999999999 99999999 9999999999999 9999
Q ss_pred hhhhhhhhhhcccc----ccCCCCHHHHHHHHHHHHhhhhhhhccCccccceeEEeeeccccchhhHHHHHHHHHHHHHH
Q psy4183 337 TLRPCIGNILSYLF----PKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALIAAFV 412 (898)
Q Consensus 337 ~iGa~ig~~l~~~f----~~~~~~~~~~r~lvaaGaAAGlaAaF~APLaGvlFalE~l~~~~~~~~l~~~~~as~va~~v 412 (898)
||++.+++.++|.. ..+..|+.++.+++++|+|-|+|+.|.||+|||+|++|+.+++|..|++|+.|+|+..++++
T Consensus 216 HiasivA~~l~k~~a~~~~g~~enesR~~EmLaaaCAVGVactFsAPiGgVLfSIEvTS~yFAVrnYWRGFFAAtcsA~v 295 (931)
T KOG0476|consen 216 HIASIVAALLSKVTACQFGGFFENESRNMEMLAAACAVGVACTFSAPIGGVLFSIEVTSTYFAVRNYWRGFFAATCSAFV 295 (931)
T ss_pred hHHHHHHHHHHHHHHhhccccccCcchHHHHHHHHhhhhheeeecCccceeEEEEEEeeeeeeHHHHHHHHHHHHhHHHH
Confidence 99999999998752 22336788889999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCcce----eeeee--cccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-----ccCCchhHHH
Q psy4183 413 LRSINPFGNEHS----VLFYV--EYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMS-----RLGQYPVTEV 481 (898)
Q Consensus 413 ~~~l~~~g~~~~----~~f~~--~~~~~~~~~~l~~~lllGil~Gl~g~lF~~l~~~~~~~~~~~-----~~~~~p~~~~ 481 (898)
+|.+..|..... .+|+. +.+.+++..|++.|+++|++||++|++|.++.++..-+.+++ -+.+++++..
T Consensus 296 FR~lavf~v~~~~tItA~yqT~F~~d~~F~~~ELp~FallGl~cGllGa~fVylhR~ivlf~Rkn~~~~~~f~k~~llyp 375 (931)
T KOG0476|consen 296 FRLLAVFFVEAEVTITALYQTSFRPDFPFDVQELPFFALLGLLCGLLGALFVYLHRRIVLFLRKNRYAKKLFQKSRLLYP 375 (931)
T ss_pred HHHHHHHcccchhhhHHHHhccCCCCCCCCHHHhHHHHHHHHHHhcccceeeeeeeeeeeeehhhHHHHHHHhhCccHHH
Confidence 999875543211 12333 334578889999999999999999999988765432222111 1223456677
Q ss_pred HHHHHHhhheeccCccccccc-----------------------------------CCC-CCchhHHHHHHHHHHHHHHH
Q psy4183 482 LVITAITTLISFPNPFTRMST-----------------------------------KAG-PGVYTAVWLLMITLVLKLVL 525 (898)
Q Consensus 482 ~l~glv~gll~~~~p~~~g~g-----------------------------------~~~-~g~~~~~~~L~~~l~~K~l~ 525 (898)
.+++++.+.+.|+....+... ..+ +|.......|.++.+.|+.+
T Consensus 376 ~~~a~v~ssltfP~GlG~f~aG~l~f~etl~~fF~Nctw~~~~~~~~~~~~~~~~hW~~p~g~~~~f~tL~lf~l~~F~~ 455 (931)
T KOG0476|consen 376 AFIALVFSSLTFPPGLGQFLAGRLSFRETLVDFFDNCTWWVQTNDSELCPAHILTHWYHPEGDVSIFGTLVLFFLMYFWM 455 (931)
T ss_pred HHHHHHHhheecCCcccccccccccHHhHHHHHhhcCeeeecCCCcCCCChhhhhhhcCCCCceeeHHHHHHHHHHHHHH
Confidence 888888888888765433221 001 23334556788999999999
Q ss_pred HHHHhcccccccccchhhhhhhHHHHHHHHHHHHhhhhcCccchhccccCCCCCCChhHHHHHHHHHHHhhhhccchhhh
Q psy4183 526 TVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECSTNDCITPGLYAMVGAAAVLGGVTRMTGNIL 605 (898)
Q Consensus 526 t~ltlgsG~pGG~f~Psl~iGA~lG~l~G~l~~~l~~~~p~~~~~~~~~~~g~~i~p~~~alvGmaA~lag~~raPltai 605 (898)
++++....+|.|.|+|.+.+||++||++|..+..+ +|+...+++- .+.+.||.||++||||+-+++|+ +++..
T Consensus 456 siia~TipvPsG~FmPvFViGAafGRlvGE~m~~l---fP~Gi~~~gi---~~~I~PG~YAVVGAAAfsGaVTH-TvSvA 528 (931)
T KOG0476|consen 456 SIIATTIPVPSGVFMPVFVIGAAFGRLVGEIMAVL---FPEGIRGGGI---TPPIHPGGYAVVGAAAFSGAVTH-TVSVA 528 (931)
T ss_pred HHHHhccccCccceeeeeeechhhhhhhhhhheee---cccccccCCc---cCccccchhhhhhhhhhccceee-eeeEE
Confidence 99999999999999999999999999999765443 5665433220 14689999999999999999987 69999
Q ss_pred hccccccccchhhHHHHHHHHHHHHHHHHHhhhcccccccccc
Q psy4183 606 SYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEE 648 (898)
Q Consensus 606 vl~~Eltg~~~~~~~~li~~~~AagiAa~f~apl~g~lF~lE~ 648 (898)
+|++|+||+ ...++|+|+|..+|.++++-+-.++|+-=+
T Consensus 529 VIifElTGQ----l~hiLPVmIAVllaNAVa~~LQPSiYDSII 567 (931)
T KOG0476|consen 529 VIIFELTGQ----LCHILPVMIAVLLANAVAASLQPSIYDSII 567 (931)
T ss_pred EEEEeeccc----hHHHHHHHHHHHHHHHHHHHhCcchhhhee
Confidence 999999999 899999999999999999999998887533
No 16
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore
Probab=100.00 E-value=6.9e-47 Score=430.12 Aligned_cols=378 Identities=26% Similarity=0.377 Sum_probs=309.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCCcccCCCCCchhhHHHHHhhccccccchhhhhHHHHH
Q psy4183 182 DSEEGSVAGIIDIGSSWMSDLKYGLCPEAFWLNKEQCCWSSNETSFEDTGNCSQWLTWAEVMGSNKEGFMAYTLEYVFFI 261 (898)
Q Consensus 182 g~~vG~~a~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~i 261 (898)
|+++|+++.++....++++++..++..+. . .....++ .++.
T Consensus 1 Gi~~Gl~~~lf~~~l~~~~~~~~~~~~~~----------------~-~~~~~~~----------------------~~~~ 41 (383)
T cd00400 1 GVLSGLGAVLFRLLIELLQNLLFGGLPGE----------------L-AAGSLSP----------------------LYIL 41 (383)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhccccc----------------c-ccccccH----------------------HHHH
Confidence 46789999999999999998875432110 0 0001111 2233
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcCCccccccccccccchhhhhhHHHHHhcCccccCCCCchhhhhhh
Q psy4183 262 AWALLFASLAAGLVRMFAPYACGSGIPEQNYSDVEGSSLVVYVGKSGHSSSKSCGRIMLAVSAGLSLRKGRTPWFTLRPC 341 (898)
Q Consensus 262 l~~~~~~~l~~~L~~~~~p~a~GsGIp~v~~~~l~G~~~~~~l~~~~~~~~K~l~~~ilav~sG~SlGrE~GP~v~iGa~ 341 (898)
+.+.+.+.+++.+.++..| ..|+|+||+++ .+++. ++.+++++ .+.|++++ ++++++|+|+||| ||++|+|++
T Consensus 42 ~~~~~g~~~v~l~~~~~~~-~~g~G~~~v~~-~~~~~--~~~~~~~~-~~~k~l~~-~l~~~~G~s~G~e-gP~v~iGa~ 114 (383)
T cd00400 42 LVPVIGGLLVGLLVRLLGP-ARGHGIPEVIE-AIALG--GGRLPLRV-ALVKFLAS-ALTLGSGGSVGRE-GPIVQIGAA 114 (383)
T ss_pred HHHHHHHHHHHHHHHHhCc-ccCCChHHHHH-HHHhC--CCCCCHHH-HHHHHHHH-HHHHHcCCCCCcc-hHHHHHHHH
Confidence 4455566666666655544 88999999998 55542 34567777 99999999 9999999999999 999999999
Q ss_pred hhhhhccccccCCCCHHHHHHHHHHHHhhhhhhhccCccccceeEEeeeccccchhhHHHHHHHHHHHHHHHHHhccCCC
Q psy4183 342 IGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALIAAFVLRSINPFGN 421 (898)
Q Consensus 342 ig~~l~~~f~~~~~~~~~~r~lvaaGaAAGlaAaF~APLaGvlFalE~l~~~~~~~~l~~~~~as~va~~v~~~l~~~g~ 421 (898)
+|++++|+++ .+++|+|++++||+|||++++||||++|++|++|++.++++.+.++++++++++++.+.+.+ .++
T Consensus 115 ~g~~~~~~~~---~~~~~~~~l~~~G~aaglaa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~a~~v~~~~--~~~ 189 (383)
T cd00400 115 IGSWLGRRLR---LSRNDRRILVACGAAAGIAAAFNAPLAGALFAIEVLLGEYSVASLIPVLLASVAAALVSRLL--FGA 189 (383)
T ss_pred HHHHHHHHhC---CCHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH--cCC
Confidence 9999999886 68889999999999999999999999999999999999998899999999999999999987 455
Q ss_pred cceeeeeecccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCchhHHHHHHHHHhhheeccCcccccc
Q psy4183 422 EHSVLFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSRLGQYPVTEVLVITAITTLISFPNPFTRMS 501 (898)
Q Consensus 422 ~~~~~f~~~~~~~~~~~~l~~~lllGil~Gl~g~lF~~l~~~~~~~~~~~~~~~~p~~~~~l~glv~gll~~~~p~~~g~ 501 (898)
++. +..+...+++..++++++++|+++|++|.+|++.+.+.++++++. +++++++.++++++++++.++.|+..++
T Consensus 190 ~~~--~~~~~~~~~~~~~~~~~il~Gv~~g~~g~~f~~~~~~~~~~~~~~--~~~~~~~~~i~gll~~~~~~~~p~~~g~ 265 (383)
T cd00400 190 EPA--FGVPLYDPLSLLELPLYLLLGLLAGLVGVLFVRLLYKIERLFRRL--PIPPWLRPALGGLLLGLLGLFLPQVLGS 265 (383)
T ss_pred CCe--eeCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCcHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 543 444445667889999999999999999999999999998887653 3456788899999999999888998777
Q ss_pred cCC-----CCCchhHHHHHHHHHHHHHHHHHHHhcccccccccchhhhhhhHHHHHHHHHHHHhhhhcCccchhccccCC
Q psy4183 502 TKA-----GPGVYTAVWLLMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECST 576 (898)
Q Consensus 502 g~~-----~~g~~~~~~~L~~~l~~K~l~t~ltlgsG~pGG~f~Psl~iGA~lG~l~G~l~~~l~~~~p~~~~~~~~~~~ 576 (898)
+.. .++. .....+...++.|+++|++|+++|.|||+|+|++++||++|+.++++++.+. |
T Consensus 266 G~~~~~~~~~~~-~~~~~l~~~~~~K~~~t~l~~~sG~~GG~~~P~l~iGa~~G~~~~~~~~~~~---~----------- 330 (383)
T cd00400 266 GYGAILLALAGE-LSLLLLLLLLLLKLLATALTLGSGFPGGVFAPSLFIGAALGAAFGLLLPALF---P----------- 330 (383)
T ss_pred cHHHHHHHHcCC-hhHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHhC---C-----------
Confidence 611 1121 2334556788999999999999999999999999999999999999887643 2
Q ss_pred CCCCChhHHHHHHHHHHHhhhhccchhhhhccccccccchhhHHHHHHHHHHHHHHH
Q psy4183 577 NDCITPGLYAMVGAAAVLGGVTRMTGNILSYLFPKYGRNEAKKREILSAAAAAGVSV 633 (898)
Q Consensus 577 g~~i~p~~~alvGmaA~lag~~raPltaivl~~Eltg~~~~~~~~li~~~~AagiAa 633 (898)
..+.+|..++++||+|++++++|+|++++++++|+|++ .+.++|+++++.+|+
T Consensus 331 ~~~~~~~~~~~~G~aa~la~~~~aPlt~~vl~~Eltg~----~~~l~p~~ia~~ia~ 383 (383)
T cd00400 331 GLVASPGAYALVGMAALLAAVLRAPLTAILLVLELTGD----YSLLLPLMLAVVIAY 383 (383)
T ss_pred cccCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHhCC----hhhHHHHHHHHHhcC
Confidence 13578999999999999999999999999999999996 799999999998864
No 17
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=4e-45 Score=414.24 Aligned_cols=326 Identities=19% Similarity=0.201 Sum_probs=267.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCChhhhhhhhhcCCccccccccccccchhhhhhHHHHHhcCccccCCCCchhhhhhhhhhh
Q psy4183 266 LFASLAAGLVRMFAPYACGSGIPEQNYSDVEGSSLVVYVGKSGHSSSKSCGRIMLAVSAGLSLRKGRTPWFTLRPCIGNI 345 (898)
Q Consensus 266 ~~~~l~~~L~~~~~p~a~GsGIp~v~~~~l~G~~~~~~l~~~~~~~~K~l~~~ilav~sG~SlGrE~GP~v~iGa~ig~~ 345 (898)
+.+.+++++.+++.|+ .++|++|+++ .+++. +++++++. .+.|++++ .+++++|.|+||| ||++|+|++++++
T Consensus 39 ~~g~~i~~l~~~~~~~-~~~g~~~v~~-~~~~~--~~~~~~~~-~~~k~~~~-~l~l~~G~s~G~E-gp~v~~ga~~~~~ 111 (378)
T cd03682 39 LAGLLIGYLYQKFGKN-SEKGNNLIIE-EIHGP--EEGIPLRM-APLVLFGT-VLTHLFGGSAGRE-GTAVQMGGSLADA 111 (378)
T ss_pred HHHHHHHHHHHHhCcc-cCCChHHHHH-HHHcc--CCCCchHH-HHHHHHHH-HHHHHcCCccCCc-chHHHHHHHHHHH
Confidence 3455666788877665 5689999998 44432 34566777 99999999 9999999999999 9999999999999
Q ss_pred hccccccCCCCHHHHHHHHHHHHhhhhhhhccCccccceeEEeeec-cccchhhHHHHHHHHHHHHHHHHHhccCCCcce
Q psy4183 346 LSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVS-YYFPLKTLWRSFFCALIAAFVLRSINPFGNEHS 424 (898)
Q Consensus 346 l~~~f~~~~~~~~~~r~lvaaGaAAGlaAaF~APLaGvlFalE~l~-~~~~~~~l~~~~~as~va~~v~~~l~~~g~~~~ 424 (898)
++|++| .+++++|++++||+|||++|+||||++|++|++|++. ++++.+.++++++++++++.+.+.+. ..++
T Consensus 112 ~~~~~~---~~~~~~r~l~~~g~aAglaa~f~aPl~g~~f~~E~~~~~~~~~~~~~~~~i~~~~a~~v~~~~~--~~~~- 185 (378)
T cd03682 112 FGRVFK---LPEEDRRILLIAGIAAGFAAVFGTPLAGAIFALEVLVLGRLRYSALIPCLVAAIVADWVSHALG--LEHT- 185 (378)
T ss_pred HHHHhC---CCHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhC--CCCC-
Confidence 999887 6788999999999999999999999999999999996 77889999999999999999988652 2222
Q ss_pred eeeeecccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCchhHHHHHHHHHhhheeccCcc--ccccc
Q psy4183 425 VLFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSRLGQYPVTEVLVITAITTLISFPNPF--TRMST 502 (898)
Q Consensus 425 ~~f~~~~~~~~~~~~l~~~lllGil~Gl~g~lF~~l~~~~~~~~~~~~~~~~p~~~~~l~glv~gll~~~~p~--~~g~g 502 (898)
.+......++++.++++++++|+++|++|.+|++.+++.++++++. ..++++++.+++++++++.+..+. ..+.+
T Consensus 186 -~~~~~~~~~~~~~~l~~~i~~Gi~~gl~g~~f~~~~~~~~~~~~~~--~~~~~~~~~iggl~~g~~~~~~~~~~~~G~g 262 (378)
T cd03682 186 -HYHIVFIPTLDPLLFVKVILAGIIFGLAGRLFAELLHFLKKLLKKR--IKNPYLRPFVGGLLIILLVYLLGSRRYLGLG 262 (378)
T ss_pred -ccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCcHHHHHHHHHHHHHHHHHhcCCccccCC
Confidence 1333334456778999999999999999999999999998887643 244567888889999888776543 22222
Q ss_pred -----C-CCCCchhHHHHHHHHHHHHHHHHHHHhcccccccccchhhhhhhHHHHHHHHHHHHhhhhcCccchhccccCC
Q psy4183 503 -----K-AGPGVYTAVWLLMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECST 576 (898)
Q Consensus 503 -----~-~~~g~~~~~~~L~~~l~~K~l~t~ltlgsG~pGG~f~Psl~iGA~lG~l~G~l~~~l~~~~p~~~~~~~~~~~ 576 (898)
. ..++. .....++.|+++|.+|+++|.|||.|+|++++||++|+.++++++
T Consensus 263 ~~~i~~~~~~~~-----~~~~~~l~K~~~t~~s~g~G~~GG~f~P~l~iGa~~G~~~~~~~~------------------ 319 (378)
T cd03682 263 TPLIEDSFFGGT-----VYPYDWLLKLIFTVITLGAGFKGGEVTPLFFIGATLGNALAPILG------------------ 319 (378)
T ss_pred HHHHHHHHhcCC-----chHHHHHHHHHHHHHHHhcCCCCceechHHHHHHHHHHHHHHHHC------------------
Confidence 0 01111 113356899999999999999999999999999999999997652
Q ss_pred CCCCChhHHHHHHHHHHHhhhhccchhhhhccccccccchhhHHHHHHHHHHHHHHHHHhhh
Q psy4183 577 NDCITPGLYAMVGAAAVLGGVTRMTGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAP 638 (898)
Q Consensus 577 g~~i~p~~~alvGmaA~lag~~raPltaivl~~Eltg~~~~~~~~li~~~~AagiAa~f~ap 638 (898)
.++..++++||+|++++++|+|+|++++++|+|+. +.++|.++++.+|+.++.+
T Consensus 320 ---~~~~~~~~~Gmaa~laa~~raPlt~ivl~~Eltg~-----~~~~p~~ia~~ia~~~~~~ 373 (378)
T cd03682 320 ---LPVSLLAALGFVAVFAGATNTPLACIIMGIELFGA-----ENAPYFFIACLVAYLFSGH 373 (378)
T ss_pred ---CCHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhCc-----cchHHHHHHHHHHHHHhCC
Confidence 35689999999999999999999999999999985 4578999999999999753
No 18
>PRK03655 putative ion channel protein; Provisional
Probab=100.00 E-value=6.2e-43 Score=398.47 Aligned_cols=372 Identities=13% Similarity=0.109 Sum_probs=273.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCCcccCCCCCchhhHHHHHhhccccccchhhhhH
Q psy4183 178 HTFYDSEEGSVAGIIDIGSSWMSDLKYGLCPEAFWLNKEQCCWSSNETSFEDTGNCSQWLTWAEVMGSNKEGFMAYTLEY 257 (898)
Q Consensus 178 ~~l~g~~vG~~a~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 257 (898)
..+.++++|+++++..++++++.+..++..++.. .+.+.. ...++|
T Consensus 12 l~~~ailvG~~aGl~a~lf~~li~~~~~l~~~~~------------~~~~~~-~~~~~~--------------------- 57 (414)
T PRK03655 12 LSLPALAIGIASSLILIVVMKIASVLQNLLWQRL------------PGTLGI-AQDSPL--------------------- 57 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------------Cccccc-ccccch---------------------
Confidence 5677888888888888888888887755432211 111100 011111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcCCccccccccccccchhhhhhHHHHHhcCccccCCCCchhh
Q psy4183 258 VFFIAWALLFASLAAGLVRMFAPYACGSGIPEQNYSDVEGSSLVVYVGKSGHSSSKSCGRIMLAVSAGLSLRKGRTPWFT 337 (898)
Q Consensus 258 ~~~il~~~~~~~l~~~L~~~~~p~a~GsGIp~v~~~~l~G~~~~~~l~~~~~~~~K~l~~~ilav~sG~SlGrE~GP~v~ 337 (898)
+.+.++.+.+.+++++.+ +.|..+|+ .|+++. ..++ +++.+. .+.|++++ .+++++|+|+||| ||++|
T Consensus 58 -~~~~~~~~gGllvgll~~-~~~~~~G~-~~~~~~-~~~~-----~~~~~~-~~~~~~~~-~l~l~~G~S~GrE-GP~Vq 125 (414)
T PRK03655 58 -WIIGMLTLTGIAVGLVIR-FSPGHAGP-DPATEP-LIGA-----PVPPSA-LPGLLLAL-ILGLAGGVSLGPE-HPIMT 125 (414)
T ss_pred -HHHHHHHHHHHHHHHHHH-HcCCCCCC-hHHHHH-HhcC-----CCCccH-HHHHHHHH-HHHHhcCCCCCch-HHHHH
Confidence 112334556666666664 56766566 466665 4322 344455 88999999 9999999999999 99999
Q ss_pred hhhhhhhhhccccccCCCCHHHHHHHHHHHHhhhhhhhccCccccceeEEeeeccccchh---hHHHHHHHHHHHHHHHH
Q psy4183 338 LRPCIGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLK---TLWRSFFCALIAAFVLR 414 (898)
Q Consensus 338 iGa~ig~~l~~~f~~~~~~~~~~r~lvaaGaAAGlaAaF~APLaGvlFalE~l~~~~~~~---~l~~~~~as~va~~v~~ 414 (898)
+|++++++++|+++ ++.++|+++.||+|||+||+||||++|++|++||+.++++.+ ...+.++++++++.+.+
T Consensus 126 iGa~igs~~~r~~~----~~~~~~~l~~~gaAaGiaAaFnaPLaG~lFa~E~l~~~~~~~~~~~~~~~v~aa~~a~~v~~ 201 (414)
T PRK03655 126 VNIALAVAIGARLL----PRVNRMDWTILASAGTIGALFGTPVAAALIFSQTLNGSNEVPLWDRLFAPLMAAAAGALTTG 201 (414)
T ss_pred HHHHHHHHHHHHhc----cCCChhHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999874 224567789999999999999999999999999999887752 34555667777877777
Q ss_pred HhccCCCcceeeeeecccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCchhHHHHHHHHHhhheecc
Q psy4183 415 SINPFGNEHSVLFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSRLGQYPVTEVLVITAITTLISFP 494 (898)
Q Consensus 415 ~l~~~g~~~~~~f~~~~~~~~~~~~l~~~lllGil~Gl~g~lF~~l~~~~~~~~~~~~~~~~p~~~~~l~glv~gll~~~ 494 (898)
.+ ++.. ..+..+.....+..++++++++|+++|++|.+|++...+.+++.++. ++|.++..++|++++++.+.
T Consensus 202 ~~--~~~~--~~~~~~~~~~~~~~~~~~~l~lgi~~gl~G~lf~~~~~~~~~~~~~~---~~p~~~~~lgGl~vg~l~l~ 274 (414)
T PRK03655 202 LF--FHPH--FSLPIAHYGQMEMTDILSGAIVAAIAIAAGMVAVWCLPRLHALMHRL---KNPVLVLGIGGFILGILGVI 274 (414)
T ss_pred Hh--CCCC--cceecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHHHHH
Confidence 65 3322 22333323345567888999999999999999999988888766543 23556778889999988876
Q ss_pred C-cccccccC-----CCCCchhHHHHHHHHHHHHHHHHHHHhcccccccccchhhhhhhHHHHHHHHHHHHhhhhcCccc
Q psy4183 495 N-PFTRMSTK-----AGPGVYTAVWLLMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIW 568 (898)
Q Consensus 495 ~-p~~~g~g~-----~~~g~~~~~~~L~~~l~~K~l~t~ltlgsG~pGG~f~Psl~iGA~lG~l~G~l~~~l~~~~p~~~ 568 (898)
. |+..++|. ..++.....+.++.+.+.|+++|.+|+++|.|||+|.|++++||.+|..++.++ |
T Consensus 275 ~~~~~~g~Gy~~i~~~~~~~~~~~~~ll~l~l~K~lat~ls~~sG~~GGiF~PsL~iGA~~G~~~~~l~-------p--- 344 (414)
T PRK03655 275 GGPLTLFKGLDEMQQMAANQAFSASDYFLLAVVKLAALVVAAASGFRGGRIFPAVFVGVALGLMLHAHV-------P--- 344 (414)
T ss_pred hCCccccCCHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHccCCCCceehHHHHHHHHHHHHHHHhc-------c---
Confidence 4 65565551 111212344556668899999999999999999999999999999999998754 2
Q ss_pred hhccccCCCCCCChhHHHHHHHHHHHhhhhc----cchhhhhccccccccchhhHHHHHHHHHHHHHHHHH
Q psy4183 569 IFAGECSTNDCITPGLYAMVGAAAVLGGVTR----MTGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAF 635 (898)
Q Consensus 569 ~~~~~~~~g~~i~p~~~alvGmaA~lag~~r----aPltaivl~~Eltg~~~~~~~~li~~~~AagiAa~f 635 (898)
..++...+++||+|+++++|| +|+|+.+++.|+| ++|.++++.+++..
T Consensus 345 ----------~~~~~~~v~~~m~a~la~vtr~p~~sp~ta~viv~em~---------~~~l~~~~~~~~~~ 396 (414)
T PRK03655 345 ----------AVPAAITVSCAILGIVLVVTRDGWLSLFMAAVVVPDTT---------LLPLLCIVMLPAWL 396 (414)
T ss_pred ----------CCChHHHHHHHHHHHHHHHhccchhhHHHHHHHHhcch---------HHHHHHHHHHHHHH
Confidence 356788889999999999999 6999999999998 66777777776554
No 19
>cd03684 ClC_3_like ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn
Probab=100.00 E-value=8.9e-41 Score=385.54 Aligned_cols=385 Identities=51% Similarity=0.849 Sum_probs=290.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccCCch--hHHHHHHHHHhhhee-ccCccccccc-----CCCCCchhHHHHHHHH
Q psy4183 447 GVIGGIIAYIFIRLNLKWCRYRKMSRLGQYP--VTEVLVITAITTLIS-FPNPFTRMST-----KAGPGVYTAVWLLMIT 518 (898)
Q Consensus 447 Gil~Gl~g~lF~~l~~~~~~~~~~~~~~~~p--~~~~~l~glv~gll~-~~~p~~~g~g-----~~~~g~~~~~~~L~~~ 518 (898)
|++.|+++..+....++....|.... .+- ++..++.+++.+.+. ++.|...+++ ...+|....-..-...
T Consensus 1 g~~~g~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~l~~~~~p~a~GsGIp~v~~~l~g~~~~~~~~~~~ 78 (445)
T cd03684 1 GIAIGLIAGLIDIIASWLSDLKEGYC--NYIIYVLLALLFAFIAVLLVKVVAPYAAGSGIPEIKTILSGFIIRGFLGKWT 78 (445)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHhcCccccCCCHHHHHHHHcCccccccccHHH
Confidence 67889999999998888887766431 111 122234445555443 6778876655 1112211111122457
Q ss_pred HHHHHHHHHHHhcccccccccchhhhhhhHHHHHHHHHHHHhhhhcCccchhccccCCCCCCChhHHHHHHHHHHHhhhh
Q psy4183 519 LVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECSTNDCITPGLYAMVGAAAVLGGVT 598 (898)
Q Consensus 519 l~~K~l~t~ltlgsG~pGG~f~Psl~iGA~lG~l~G~l~~~l~~~~p~~~~~~~~~~~g~~i~p~~~alvGmaA~lag~~ 598 (898)
.+.|.+.+.+++++|.|.|+|+|++++||++|..++++++..
T Consensus 79 ~~~k~l~~~l~i~~G~s~GrEGP~v~iGa~ia~~l~~~~~~~-------------------------------------- 120 (445)
T cd03684 79 LLIKSVGLVLAVASGLSLGKEGPLVHIATCVGNIISRLFPKY-------------------------------------- 120 (445)
T ss_pred HHHHHHhhHHhhccCCcCCCCCCcchHHHHHHHHHHHHHHHh--------------------------------------
Confidence 889999999999999999999999999999999999776431
Q ss_pred ccchhhhhccccccccchhhHHHHHHHHHHHHHHHHHhhhcccccccccccccccchhhHHHHHHHHHHHHHHHHHhccC
Q psy4183 599 RMTGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALIAAFVLRSINPF 678 (898)
Q Consensus 599 raPltaivl~~Eltg~~~~~~~~li~~~~AagiAa~f~apl~g~lF~lE~l~~~~s~~~l~~~f~aSiiA~~v~~~l~~~ 678 (898)
+.+++|+|.++.|++||++|++|++|++|.+|++||+.++++.+.+++++++|++|+++.+.+..+
T Consensus 121 --------------~~~~~~~r~li~~GaaAGlaAaF~APi~G~lFalE~l~~~~~~~~l~~~~~as~~a~~v~~~~~~~ 186 (445)
T cd03684 121 --------------RRNEAKRREILSAAAAAGVAVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALVAAFTLKSLNPF 186 (445)
T ss_pred --------------ccCHHHHHHHHHHHHhhhhHHhcCCccchhhhhhHhhhhhccHHHHHHHHHHHHHHHHHHHHhccc
Confidence 126778899999999999999999999999999999999999999999999999999999987656
Q ss_pred CCCcceeeeeeccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHhhccccccc
Q psy4183 679 GNEHSVLFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSRLGQYPVTEVLVITAITTLISFPNPFTR 758 (898)
Q Consensus 679 g~~~~~~f~~~~~~~~~~~~l~~~ilLGii~Gllg~lF~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~l~~~~p~~~ 758 (898)
+.++...++.+...+++..++++++++|+++|++|.+|++.+.+.+|++++.+.++++..++++++++++.+.++.|+..
T Consensus 187 ~~~~~~~f~~~~~~~~~~~~l~~~i~lGi~~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~l~~~~p~~~ 266 (445)
T cd03684 187 GTGRLVLFEVEYDRDWHYFELIPFILLGIFGGLYGAFFIKANIKWARFRKKSLLKRYPVLEVLLVALITALISFPNPYTR 266 (445)
T ss_pred CCCCceEEeccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHc
Confidence 65555455555455677889999999999999999999999999888766544345678899999999999999999998
Q ss_pred cchhhHHHHHhhhcCCCcCCCchhhHhhhcccccCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHhccCccccccch
Q psy4183 759 MSTSQLIYLLFSQCGGVSYNNGLCDYVINHNATSTSNPTTSEAGPGVYTAVWLLMITLVLKLVLTVFTFGIKVPCGLFIP 838 (898)
Q Consensus 759 ~~~~~~i~~~f~~~~g~~y~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~llv~K~~~T~lt~gsG~pGGif~P 838 (898)
+++.+.+...+.++...+.++. ++.. + + ....+.+.....+++++++|+++|++|+|+|+|||+|+|
T Consensus 267 ~~g~~~i~~l~~~~~~~~~~~~-~~~~-~-~----------~~~~~~~~~~~~l~~~~l~K~~~t~lt~gsG~~GG~f~P 333 (445)
T cd03684 267 LDMTELLELLFNECEPGDDNSL-CCYR-D-P----------PAGDGVYKALWSLLLALIIKLLLTIFTFGIKVPAGIFVP 333 (445)
T ss_pred cchhhHHHHHHhcCCCcccccc-cccc-c-c----------cCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcceeHH
Confidence 8888888777765533222111 1000 0 0 001111224556677788999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHhhhcCCcchhccccCCCCCcCChHHHHHHHHHHHHHHhhcCC
Q psy4183 839 SLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECSTNDCITPGLYAMVGAAAVLGGVTRMT 898 (898)
Q Consensus 839 sL~IGA~~G~l~G~ll~~l~~~~p~~~~~~~~~~~~~~~~p~~~AlvGmAa~lagvtrat 898 (898)
+|++||++|+++|.+++.+...+|+++.+..+.......+|+.||++||+|++++++|++
T Consensus 334 ~l~iGA~~G~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~alvGmaa~~a~~~raP 393 (445)
T cd03684 334 SMAVGALFGRIVGILVEQLAYSYPDSIFFACCTAGPSCITPGLYAMVGAAAFLGGVTRMT 393 (445)
T ss_pred HHHHHHHHhHHHHHHHHHHHhhCCcccccccccCCCCccCchHHHHHHHHHHhcchhccc
Confidence 999999999999999987655556543332111111236899999999999999999975
No 20
>KOG0475|consensus
Probab=100.00 E-value=4.8e-41 Score=378.14 Aligned_cols=335 Identities=53% Similarity=0.881 Sum_probs=286.9
Q ss_pred HHhhheeccCcccccccC-C----CCCchhHHHHHHHHHHHHHHHHHHHhcccccccccchhhhhhhHHHHHHHHHHHHh
Q psy4183 486 AITTLISFPNPFTRMSTK-A----GPGVYTAVWLLMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQL 560 (898)
Q Consensus 486 lv~gll~~~~p~~~g~g~-~----~~g~~~~~~~L~~~l~~K~l~t~ltlgsG~pGG~f~Psl~iGA~lG~l~G~l~~~l 560 (898)
+.+.++-.+.|+..++|- + .+|.......-.+.+++|-++..+++++|.+-|.++|+++++.++|..+.+++...
T Consensus 143 la~~lv~~~AP~A~gSGIpEIK~ilSGf~~~~~lg~~tl~iKsVal~lsvaSGLSlGKEGP~VHiA~c~g~~~s~~f~~~ 222 (696)
T KOG0475|consen 143 LAVSLVKVVAPYACGSGIPEIKTILSGFIIRGFLGKWTLLIKSVALCLSVASGLSLGKEGPSVHIATCIGNIFSKIFPKY 222 (696)
T ss_pred HHHHHhhheehhhhcCCCccceeeeccchhhhhhhHHHHhhhhhhheeeeccccccCCCCCceeeeechhhhHhhhhhhh
Confidence 333444567788777761 1 12221122233567889999999999999999999999999999999999876432
Q ss_pred hhhcCccchhccccCCCCCCChhHHHHHHHHHHHhhhhccchhhhhccccccccchhhHHHHHHHHHHHHHHHHHhhhcc
Q psy4183 561 AFHYPHIWIFAGECSTNDCITPGLYAMVGAAAVLGGVTRMTGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIG 640 (898)
Q Consensus 561 ~~~~p~~~~~~~~~~~g~~i~p~~~alvGmaA~lag~~raPltaivl~~Eltg~~~~~~~~li~~~~AagiAa~f~apl~ 640 (898)
+.++.++|.++.+.+|+|+|.+|++|++
T Consensus 223 ----------------------------------------------------~~~e~~~reilsAaaAaGvavaFgAPIG 250 (696)
T KOG0475|consen 223 ----------------------------------------------------RLNEAKKREILSAAAAAGVAVAFGAPIG 250 (696)
T ss_pred ----------------------------------------------------ccchhHHHHHHHHHhhccchhhcCCccc
Confidence 1255557888899999999999999999
Q ss_pred cccccccccccccchhhHHHHHHHHHHHHHHHHHhccCCCCcceeeeeeccCccchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy4183 641 GVLFSLEEVSYYFPLKTLWRSFFCALIAAFVLRSINPFGNEHSVLFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLN 720 (898)
Q Consensus 641 g~lF~lE~l~~~~s~~~l~~~f~aSiiA~~v~~~l~~~g~~~~~~f~~~~~~~~~~~~l~~~ilLGii~Gllg~lF~~l~ 720 (898)
|++|++||++.+++.+.+|+.++++.+|..+.|.+++|++.+..+|++.++.+|++.|+++|++||++||+.|.+|.|.+
T Consensus 251 GVlFslEev~~~fp~ktlw~sff~aLsAv~~L~~i~pf~~~~~vLf~V~Y~~~W~~~EL~pFi~LGifgGl~G~~~ir~n 330 (696)
T KOG0475|consen 251 GVLFSLEEVSYYFPLKTLWRSFFCALSAVTALRSINPFGNSRLVLFYVDYDRPWSLFELLPFILLGIFGGLWGAFFIRLN 330 (696)
T ss_pred eeeeehhhhhhcCCccchHHHHHHHHHHHHHHeeecccCCCceEEEEEeccCCcccccchHHHHHHHhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcccCCchhHHHHHHHHHHHHhhccccccccchhhHHHHHhhhcCCCcCCCchhhHhhhcccccCCCCCCCC
Q psy4183 721 LKWCRYRKMSRLGQYPVTEVLVITAITTLISFPNPFTRMSTSQLIYLLFSQCGGVSYNNGLCDYVINHNATSTSNPTTSE 800 (898)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~i~g~l~~~~p~~~~~~~~~i~~~f~~~~g~~y~~~l~~~l~~~~~~~~~~~~~~~ 800 (898)
.++.|+||..+..++|+.++++++++++++.+++|+.+.+..+.+..+|.+|...+-.+ + +.
T Consensus 331 ~~~~~~rK~~~lg~~pv~ev~~vt~iTaiIs~~np~~r~~~~e~i~~Lf~~C~~~~s~~-l--------------~~--- 392 (696)
T KOG0475|consen 331 IRFCRFRKSSKLGKFPVLEVVFVTLVTAIISLFNPETRFNMSELITILFNKCSPSSSTS-L--------------PE--- 392 (696)
T ss_pred HHHHhccchhhccCCcchhHHHHHHHHHHHHhcCHHHHhhHHHHHHHHHhhcCCccccc-C--------------cc---
Confidence 99999888877889999999999999999999999999999999999999987642210 0 00
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHhccCccccccchHhHHHHHHHHHHHHHHHHhhhcCCcchhccccCCCCCcCChH
Q psy4183 801 AGPGVYTAVWLLMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECSTNDCITPG 880 (898)
Q Consensus 801 ~~~~~~~~~~~Ll~llv~K~~~T~lt~gsG~pGGif~PsL~IGA~~G~l~G~ll~~l~~~~p~~~~~~~~~~~~~~~~p~ 880 (898)
...|...+.|+..+++|+++|++|+|+++|+|+|+|||+|||..||++|.+..+++.+ |+.+.+. -+++.|+
T Consensus 393 --~~~~~~~~~L~~a~i~k~~~t~ftfGakvP~GifvPSmaiGA~aGr~vG~~~e~l~~~-~~~~~fg-----~~ci~Pg 464 (696)
T KOG0475|consen 393 --TTVYSAAILLLLALILKIALTIFTFGAKVPAGIFVPSLAIGAIAGRAVGIIVEQLAQN-PDFNLFG-----LSCATPG 464 (696)
T ss_pred --cchHHHHHHHHHHHHHHHHHHHhhhhccCccceecchHHHHHHHHHHHHHHHHHHhcC-CCccccc-----hhhcCch
Confidence 1145667788888999999999999999999999999999999999999998888766 7766552 2468999
Q ss_pred HHHHHHHHHHHHHhhcCC
Q psy4183 881 LYAMVGAAAVLGGVTRMT 898 (898)
Q Consensus 881 ~~AlvGmAa~lagvtrat 898 (898)
.||++||||+++|+||+|
T Consensus 465 ~Ya~vGaAA~LsGvtrlt 482 (696)
T KOG0475|consen 465 AYALVGAAATLSGVTRLT 482 (696)
T ss_pred HHHHHHHHHHhcCcceee
Confidence 999999999999999987
No 21
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=100.00 E-value=5.5e-36 Score=342.95 Aligned_cols=349 Identities=17% Similarity=0.170 Sum_probs=261.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----------cccCC-chhHHHHHHHHHhhheeccC-cccccccCCC
Q psy4183 438 FELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKM----------SRLGQ-YPVTEVLVITAITTLISFPN-PFTRMSTKAG 505 (898)
Q Consensus 438 ~~l~~~lllGil~Gl~g~lF~~l~~~~~~~~~~----------~~~~~-~p~~~~~l~glv~gll~~~~-p~~~g~g~~~ 505 (898)
+++...+++|+++|+.+.+|.+.+++.++.... ...+. +.++-+.+++++.+++.+.. ++... .+
T Consensus 3 ~~~~~a~~iG~~~G~~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~ggll~g~~~~~~~~~~~~---~~ 79 (418)
T PRK01610 3 RRLLIATVVGILAALAVAGFRHAMLLLEWLFLSNDSGSLVNAATNLSPWRRLLTPALGGLAAGLLLWGWQKFTQQ---RP 79 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchhhcccccchHHHHHHHHHHHHHHHHHHHHHcccccc---cC
Confidence 567778999999999999999998887664211 01111 12233445667666655432 22111 11
Q ss_pred CCchhHHH-------HHHHHHHHHHHHHHHHhcccccccccchhhhhhhHHHHHHHHHHHHhhhhcCccchhccccCCCC
Q psy4183 506 PGVYTAVW-------LLMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECSTND 578 (898)
Q Consensus 506 ~g~~~~~~-------~L~~~l~~K~l~t~ltlgsG~pGG~f~Psl~iGA~lG~l~G~l~~~l~~~~p~~~~~~~~~~~g~ 578 (898)
+|..+.+. .-....+.|.+.+.+++++|.|.|+|+|+.++|+++|..+++.++
T Consensus 80 ~g~~~vi~av~~~g~~~~~~~~~k~~~~~l~igsG~S~GrEGP~v~iGa~~g~~~~~~~~-------------------- 139 (418)
T PRK01610 80 HAPTDYMEALQTDGQFDYAASLVKSLASLLVVTSGSAIGREGAMILLAALAASCFAQRFT-------------------- 139 (418)
T ss_pred CCcHHHHHHHHcCCCCCccHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhC--------------------
Confidence 11111111 112356889999999999999999999999999999999997542
Q ss_pred CCChhHHHHHHHHHHHhhhhccchhhhhccccccccchhhHHHHHHHHHHHHHHHHHhhhcccccccccccccccchhhH
Q psy4183 579 CITPGLYAMVGAAAVLGGVTRMTGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTL 658 (898)
Q Consensus 579 ~i~p~~~alvGmaA~lag~~raPltaivl~~Eltg~~~~~~~~li~~~~AagiAa~f~apl~g~lF~lE~l~~~~s~~~l 658 (898)
+++|+|.++.|++++++|++|++|++|.+|++|++.++++.+.+
T Consensus 140 ------------------------------------~~~~~r~li~~GaaAGlaa~F~aPlaG~lFa~E~l~~~~~~~~~ 183 (418)
T PRK01610 140 ------------------------------------PRQEWKLWIACGAAAGMASAYHAPLAGSLFIAEILFGTLMLASL 183 (418)
T ss_pred ------------------------------------ChHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHhhHHHH
Confidence 34568899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCcceeeeeeccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhH
Q psy4183 659 WRSFFCALIAAFVLRSINPFGNEHSVLFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSRLGQYPVT 738 (898)
Q Consensus 659 ~~~f~aSiiA~~v~~~l~~~g~~~~~~f~~~~~~~~~~~~l~~~ilLGii~Gllg~lF~~l~~~~~~~~~~~~~~~~~~~ 738 (898)
.|++++|++|+.+++.+ +|.++. .+..+...+++..++++++++|+++|++|.+|+|+.++.++.+++. +.++.+
T Consensus 184 ~p~~ias~~a~~v~~~~--~g~~~~-~~~i~~~~~~~~~~l~~~i~lGii~Gl~g~~f~~~~~~~~~~~~~~--~~~~~~ 258 (418)
T PRK01610 184 GPVVISAVVALLTTNLL--NGSDAL-LYNVQLSVTVQARDYALIISTGLLAGLCGPLLLTLMNASHRGFVSL--KLAPPW 258 (418)
T ss_pred HHHHHHHHHHHHHHHHH--cCCCCC-eeecCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--ccchhH
Confidence 99999999999999986 444333 3444444567778999999999999999999999988887755432 334567
Q ss_pred HHHHHHHHHHHhhccccccccchhhHHHHHhhhcCCCcCCCchhhHhhhcccccCCCCCCCCCCCChhhHHHHHHHHHHH
Q psy4183 739 EVLVITAITTLISFPNPFTRMSTSQLIYLLFSQCGGVSYNNGLCDYVINHNATSTSNPTTSEAGPGVYTAVWLLMITLVL 818 (898)
Q Consensus 739 ~~~~~~~i~g~l~~~~p~~~~~~~~~i~~~f~~~~g~~y~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~llv~ 818 (898)
++.+++++++++.+..|+. .|++| +..+..++.+ .....++.++++
T Consensus 259 ~~~lggli~g~l~~~~p~~---------------~G~G~--~~i~~~~~~~-----------------~~~~~l~~l~l~ 304 (418)
T PRK01610 259 QLALGGLIVGLLSLFTPAV---------------WGNGY--SVVQSFLTAP-----------------PLLMLIAGIFLC 304 (418)
T ss_pred HHHHHHHHHHHHHHHhhHH---------------hCCcH--HHHHHHHcCC-----------------hhHHHHHHHHHH
Confidence 8888999999888766643 34434 2233222211 123345566789
Q ss_pred HHHHHHHHhccCccccccchHhHHHHHHHHHHHHHHHHhhhcCCcchhccccCCCCCcCChHHHHHHHHHHHHHHhhcCC
Q psy4183 819 KLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECSTNDCITPGLYAMVGAAAVLGGVTRMT 898 (898)
Q Consensus 819 K~~~T~lt~gsG~pGGif~PsL~IGA~~G~l~G~ll~~l~~~~p~~~~~~~~~~~~~~~~p~~~AlvGmAa~lagvtrat 898 (898)
|+++|++|+|+|.+||+|+|++++||++|.++|++++.+ +|+. ..+|..|+++||+|++++++|++
T Consensus 305 K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~~~~~---~~~~-----------~~~~~~~a~vGmaA~laa~~~aP 370 (418)
T PRK01610 305 KLLAVLASSGSGAPGGVFTPTLFVGLAIGMLYGRSLGLW---LPDG-----------EEITLLLGLTGMATLLAATTHAP 370 (418)
T ss_pred HHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHh---CCCc-----------ccchHHHHHHHHHHHHHHHHccH
Confidence 999999999999999999999999999999999998865 3421 13578999999999999999974
No 22
>KOG0474|consensus
Probab=100.00 E-value=6.7e-38 Score=351.37 Aligned_cols=398 Identities=31% Similarity=0.468 Sum_probs=292.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hhcc-----cCC----chhHHHHHHHHHhhheeccCccccc
Q psy4183 438 FELIPFVGLGVIGGIIAYIFIRLNLKWCRYR--------KMSR-----LGQ----YPVTEVLVITAITTLISFPNPFTRM 500 (898)
Q Consensus 438 ~~l~~~lllGil~Gl~g~lF~~l~~~~~~~~--------~~~~-----~~~----~p~~~~~l~glv~gll~~~~p~~~g 500 (898)
.-+..+.++|++.|++|.+-+.....+..+. .+.+ +.. +...-..++.+...++.+..|...|
T Consensus 86 ~kW~~~~lIGi~TgLva~fidl~Ven~ag~Kf~~v~~~v~~~~s~~g~~~~~~l~~~g~Nl~lv~~as~lv~~iaP~AAG 165 (762)
T KOG0474|consen 86 VKWMVCFLIGICTGLVALFIDLFVENFAGLKFGVVQNSVEECRSQKGCLALSLLVLLGFNLVLVFLASVLVAYIAPVAAG 165 (762)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhccccHHHHHHHHHHHhHHHHHHHHHHHHeechhccC
Confidence 3455678899999999988665544332210 0000 000 0001123333334455688888766
Q ss_pred cc-----CCCCCchhHHHHHHHHHHHHHHHHHHHhcccccccccchhhhhhhHHHHHHHHHHHHhhhhcCccchhccccC
Q psy4183 501 ST-----KAGPGVYTAVWLLMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECS 575 (898)
Q Consensus 501 ~g-----~~~~g~~~~~~~L~~~l~~K~l~t~ltlgsG~pGG~f~Psl~iGA~lG~l~G~l~~~l~~~~p~~~~~~~~~~ 575 (898)
+| ...+|...+-...+..+++|.+..+.+.+.|.-.|.++|+++.||++|+.+++.-..
T Consensus 166 SGIPevK~YLNGV~iP~ivrl~TL~~Ki~Gvi~sV~gGL~~GKEGPMIHsGa~Vaagl~QG~S~---------------- 229 (762)
T KOG0474|consen 166 SGIPEVKCYLNGVKIPGIVRLRTLIVKILGVIFSVAGGLAVGKEGPMIHSGSVVAAGLGQGGST---------------- 229 (762)
T ss_pred CCCchhhhhhcCccCcceeehhhhHHhHhhhhhhhhhhhhccCcCCeeehhHHHHhcccCCCcc----------------
Confidence 65 122343222223467889999999999999999999999999999999998854110
Q ss_pred CCCCCChhHHHHHHHHHHHhhhhccchhhhhccccccccchhhHHHHHHHHHHHHHHHHHhhhcccccccccccccccch
Q psy4183 576 TNDCITPGLYAMVGAAAVLGGVTRMTGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPL 655 (898)
Q Consensus 576 ~g~~i~p~~~alvGmaA~lag~~raPltaivl~~Eltg~~~~~~~~li~~~~AagiAa~f~apl~g~lF~lE~l~~~~s~ 655 (898)
.+-...-.++.++ |++|+|.++.|++|||+|++|.+|++|++|++||....|+.
T Consensus 230 -------------------------~~r~~~r~fr~Fr-nDrdrRD~VscGaAAGVaAAF~APvGGvLFaLEE~aS~Wnq 283 (762)
T KOG0474|consen 230 -------------------------SLRKDWRWFRYFR-NDRDRRDLVSCGAAAGVAAAFRAPVGGVLFALEEGASWWNQ 283 (762)
T ss_pred -------------------------chhhhhhhhhhhc-ccchhhhhhhcchHHhHHHHhCCCccceEEEechhhHHHHh
Confidence 0111112334444 67889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHH-Hhc--------cCCCCcceeeeeec-cCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4183 656 KTLWRSFFCALIAAFVLR-SIN--------PFGNEHSVLFYVEY-NKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCR 725 (898)
Q Consensus 656 ~~l~~~f~aSiiA~~v~~-~l~--------~~g~~~~~~f~~~~-~~~~~~~~l~~~ilLGii~Gllg~lF~~l~~~~~~ 725 (898)
..+|+.|++|+++++|.| .+. .++.+.-+.|.... +..|+..|+++++++|+++|++|++||.++.+...
T Consensus 284 ~L~WR~fFss~i~~f~l~~~i~~~~~G~~g~f~~~GLi~f~vf~~~~~y~~~el~~f~~iGViGGlLGalfN~Ln~~~~~ 363 (762)
T KOG0474|consen 284 ALLWRTFFSSAIVAFVLRAFILSCLSGKCGLFGKGGLINFDVFDGPVDYHIHELPPFLLIGVIGGLLGALFNYLNLKKVL 363 (762)
T ss_pred hHHHHHHHHhHHHHHhHHHHHHHHhcCchhccCCcceEEecccCCccccccccccceeEeehhhhhHHHHHHHHHHHHHH
Confidence 999999999999999999 332 23222233344332 24688899999999999999999999999776655
Q ss_pred Hhhh-cccCCchhHHHHHHHHHHHHhhccccccccchh---hHHHHHh--hhcCCCcCCCchhhHhhhcccccCCCCCCC
Q psy4183 726 YRKM-SRLGQYPVTEVLVITAITTLISFPNPFTRMSTS---QLIYLLF--SQCGGVSYNNGLCDYVINHNATSTSNPTTS 799 (898)
Q Consensus 726 ~~~~-~~~~~~~~~~~~~~~~i~g~l~~~~p~~~~~~~---~~i~~~f--~~~~g~~y~~~l~~~l~~~~~~~~~~~~~~ 799 (898)
+|++ .+.+..++++.+++.++++++.|..|+.+.+.. +...... -+|..+.|| .+...+++.++++.+|..++
T Consensus 364 ~r~~~~k~k~~kvlea~~Vs~~ts~~af~l~~l~~C~P~~~~~~~~~~p~f~Cp~~~YN-dlAtL~fnt~ddaVrnLFh~ 442 (762)
T KOG0474|consen 364 RRYNYEKGKIGKVLEALLVSLVTSVLAFGLPFLADCQPCPPSITEGQCPTFFCPDGEYN-DLATLFFNTNDDAVRNLFHS 442 (762)
T ss_pred HHHhccCchHHHHHHHHHHHHHHHHHHhhhHHHhcCCCCCCCcccccCccccCCCCchh-HHHHHHcCCcHHHHHHHhcC
Confidence 4443 445556788889999999999998886654322 1111111 247777776 68888889888888777665
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHHHhccCccccccchHhHHHHHHHHHHHHHHHHhhhcCCcchhccccCCCCCcCCh
Q psy4183 800 EAGPGVYTAVWLLMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECSTNDCITP 879 (898)
Q Consensus 800 ~~~~~~~~~~~~Ll~llv~K~~~T~lt~gsG~pGGif~PsL~IGA~~G~l~G~ll~~l~~~~p~~~~~~~~~~~~~~~~p 879 (898)
.. +++. ..+|.++++.+++++++|+|..+|.|+|+|++.+||++||++|.++..+. .+||
T Consensus 443 ~~--~ef~-~~tL~iFfv~yf~L~~~TfGi~vpsGlFiP~iL~GAa~GRlvg~~l~~~~-----------------~id~ 502 (762)
T KOG0474|consen 443 PT--NEFG-ILTLAIFFVLYFFLACWTFGIAVPSGLFIPVILTGAAYGRLVGMLLGSYT-----------------NIDP 502 (762)
T ss_pred CC--Cccc-hhHHHHHHHHHHHHHHHHhcccccccchhHHHHhhHHHHHHHHHHHHHhh-----------------ccCc
Confidence 44 4443 44567788899999999999999999999999999999999999988651 2799
Q ss_pred HHHHHHHHHHHHHHhhcCC
Q psy4183 880 GLYAMVGAAAVLGGVTRMT 898 (898)
Q Consensus 880 ~~~AlvGmAa~lagvtrat 898 (898)
|.||++||||+++|++|||
T Consensus 503 G~yAllGAAa~LGG~mRMT 521 (762)
T KOG0474|consen 503 GLYALLGAAAFLGGVMRMT 521 (762)
T ss_pred hHHHHHhHHHHhCCeEEEE
Confidence 9999999999999999998
No 23
>cd03683 ClC_1_like ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia
Probab=100.00 E-value=1.4e-35 Score=340.96 Aligned_cols=345 Identities=32% Similarity=0.506 Sum_probs=253.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc--ccCCch-------hHHHHHHHHHhhhee-ccCccccccc-----CCC
Q psy4183 441 IPFVGLGVIGGIIAYIFIRLNLKWCRYRKMS--RLGQYP-------VTEVLVITAITTLIS-FPNPFTRMST-----KAG 505 (898)
Q Consensus 441 ~~~lllGil~Gl~g~lF~~l~~~~~~~~~~~--~~~~~p-------~~~~~l~glv~gll~-~~~p~~~g~g-----~~~ 505 (898)
+..+++|++.|+++..|....++..+.|... ....++ +...++.+++.+.+. ++.|+..++| ...
T Consensus 3 ~~~~l~gv~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~p~a~GsGIp~v~~~l 82 (426)
T cd03683 3 LFLALLGILMALISIAMDFAVEKLLNARRWLYSLLTGNSLLQYLVWVAYPVALVLFSALFCKYISPQAVGSGIPEMKTIL 82 (426)
T ss_pred EeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHHHHH
Confidence 3467899999999999999888887665431 011111 122233344444444 5788877766 111
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhcccccccccchhhhhhhHHHHHHHHHHHHhhhhcCccchhccccCCCCCCChhHH
Q psy4183 506 PGVYTAVWLLMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECSTNDCITPGLY 585 (898)
Q Consensus 506 ~g~~~~~~~L~~~l~~K~l~t~ltlgsG~pGG~f~Psl~iGA~lG~l~G~l~~~l~~~~p~~~~~~~~~~~g~~i~p~~~ 585 (898)
+|.....+.-...++.|++.+.+++++|.+.|+|+|++++||++|..+++..+...
T Consensus 83 ~g~~~~~~l~~r~~~~k~i~~~l~i~sG~svGrEGP~v~iGa~i~~~~~~~~~~~~------------------------ 138 (426)
T cd03683 83 RGVVLPEYLTFKTLVAKVIGLTCALGSGLPLGKEGPFVHISSIVAALLSKLTTFFS------------------------ 138 (426)
T ss_pred cCCCccccccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhccccc------------------------
Confidence 22111112235678899999999999999999999999999999999987643200
Q ss_pred HHHHHHHHHhhhhccchhhhhccccccccchhhHHHHHHHHHHHHHHHHHhhhcccccccccccccccchhhHHHHHHHH
Q psy4183 586 AMVGAAAVLGGVTRMTGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCA 665 (898)
Q Consensus 586 alvGmaA~lag~~raPltaivl~~Eltg~~~~~~~~li~~~~AagiAa~f~apl~g~lF~lE~l~~~~s~~~l~~~f~aS 665 (898)
...++++|+|.++.|++|+++|++|++|++|.+|++||+.++++.+.+++++++|
T Consensus 139 -------------------------~~~~~~~~rr~Li~~GaaAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~i~s 193 (426)
T cd03683 139 -------------------------GIYENESRRMEMLAAACAVGVACTFGAPIGGVLFSIEVTSTYFAVRNYWRGFFAA 193 (426)
T ss_pred -------------------------ccccCHHHHHHHHHhHhhhhhHHhcCCcceeeEEEeehhhhhccHHHHHHHHHHH
Confidence 0012566778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccC-CCCcce--eeee--eccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----cCCc
Q psy4183 666 LIAAFVLRSINPF-GNEHSV--LFYV--EYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSR-----LGQY 735 (898)
Q Consensus 666 iiA~~v~~~l~~~-g~~~~~--~f~~--~~~~~~~~~~l~~~ilLGii~Gllg~lF~~l~~~~~~~~~~~~-----~~~~ 735 (898)
++|+++++.+..+ +..+.. .+.. ..+.+++..++++++++|+++|++|.+|++++.+..+++++.+ ....
T Consensus 194 ~~a~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~lGv~~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~ 273 (426)
T cd03683 194 TCGAFTFRLLAVFFSDQETITALFKTTFFVDFPFDVQELPIFALLGIICGLLGALFVFLHRKIVRFRRKNRLFSKFLKRS 273 (426)
T ss_pred HHHHHHHHHHHhhcCCCccccccccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccc
Confidence 9999998875322 222221 0211 1234577789999999999999999999999988887654422 1234
Q ss_pred hhHHHHHHHHHHHHhhccccccccchhhHHHHHhhhcCCCcCCCchhhHhhhcccccCCCCCCCCCCCChhhHHHHHHHH
Q psy4183 736 PVTEVLVITAITTLISFPNPFTRMSTSQLIYLLFSQCGGVSYNNGLCDYVINHNATSTSNPTTSEAGPGVYTAVWLLMIT 815 (898)
Q Consensus 736 ~~~~~~~~~~i~g~l~~~~p~~~~~~~~~i~~~f~~~~g~~y~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~l 815 (898)
+..++.+++.+++.+.+| ...++.+
T Consensus 274 ~~l~~~~~g~~~~~l~~p-------------------------------------------------------~~~l~~~ 298 (426)
T cd03683 274 PLLYPAIVALLTAVLTFP-------------------------------------------------------FLTLFLF 298 (426)
T ss_pred hHHHHHHHHHHHHHHHHH-------------------------------------------------------HHHHHHH
Confidence 566777777777655431 1134556
Q ss_pred HHHHHHHHHHHhccCccccccchHhHHHHHHHHHHHHHHHHhhhcCCcchhccccCCC-CCcCChHHHHHHHHHHHHHHh
Q psy4183 816 LVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECST-NDCITPGLYAMVGAAAVLGGV 894 (898)
Q Consensus 816 lv~K~~~T~lt~gsG~pGGif~PsL~IGA~~G~l~G~ll~~l~~~~p~~~~~~~~~~~-~~~~~p~~~AlvGmAa~lagv 894 (898)
+++|+++|++|+|+|+|||+|+|+|++||++|+++|.+++.+ +|+.+ |.. ....+|+.||++||+|+++++
T Consensus 299 ~~~K~~~t~~t~gsG~~GGif~Psl~iGa~~G~~~g~~~~~~---~p~~~-----~~~~~~~~~~~~~alvGmaa~~a~~ 370 (426)
T cd03683 299 IVVKFVLTALAITLPVPAGIFMPVFVIGAALGRLVGEIMAVL---FPEGI-----RGGISNPIGPGGYAVVGAAAFSGAV 370 (426)
T ss_pred HHHHHHHHHHHHhCCCChhhhHHHHHHHHHHHHHHHHHHHHH---cCccc-----ccCCCCCcCchHHHHHHHHHHHHHH
Confidence 779999999999999999999999999999999999998876 44211 111 123689999999999999999
Q ss_pred hcC
Q psy4183 895 TRM 897 (898)
Q Consensus 895 tra 897 (898)
+|+
T Consensus 371 ~ra 373 (426)
T cd03683 371 THT 373 (426)
T ss_pred HhH
Confidence 995
No 24
>cd01036 ClC_euk Chloride channel, ClC. These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.
Probab=100.00 E-value=7.2e-36 Score=342.45 Aligned_cols=348 Identities=34% Similarity=0.552 Sum_probs=250.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc--ccCC-----ch--hHHHHHHHHH-hhheeccCccccccc-----CCCCCchhH
Q psy4183 447 GVIGGIIAYIFIRLNLKWCRYRKMS--RLGQ-----YP--VTEVLVITAI-TTLISFPNPFTRMST-----KAGPGVYTA 511 (898)
Q Consensus 447 Gil~Gl~g~lF~~l~~~~~~~~~~~--~~~~-----~p--~~~~~l~glv-~gll~~~~p~~~g~g-----~~~~g~~~~ 511 (898)
|++.|+++..|....++..+.|+.. +... +. +...++.+++ ..++.++.|+..+++ ...+|....
T Consensus 1 ~~~~Glv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGIp~v~~~l~g~~~~ 80 (416)
T cd01036 1 GLLMGLVAVVLDYAVESSLDAGQWLLRRIPGSYLLGYLMWVLWSVVLVLISSGICLYFAPQAAGSGIPEVMAYLNGVHLP 80 (416)
T ss_pred CeeehHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHcCCccc
Confidence 5677888888888888777765521 0011 11 1122333333 333446788877665 111221111
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccccchhhhhhhHHHHHHHHHHHHhhhhcCccchhccccCCCCCCChhHHHHHHHH
Q psy4183 512 VWLLMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECSTNDCITPGLYAMVGAA 591 (898)
Q Consensus 512 ~~~L~~~l~~K~l~t~ltlgsG~pGG~f~Psl~iGA~lG~l~G~l~~~l~~~~p~~~~~~~~~~~g~~i~p~~~alvGma 591 (898)
...-...++.|.+.+.+++++|.|.|+|+|++++||++|..+++..+......
T Consensus 81 ~~l~~~~~~~K~i~~~l~igsG~svGrEGP~V~iGa~ig~~l~~~~~~~~~~~--------------------------- 133 (416)
T cd01036 81 MYLSIRTLIAKTISCICAVASGLPLGKEGPLVHLGAMIGAGLLQGRSRTLGCH--------------------------- 133 (416)
T ss_pred ccccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhcccccccc---------------------------
Confidence 11234578899999999999999999999999999999999997653210000
Q ss_pred HHHhhhhccchhhhhccccccccchhhHHHHHHHHHHHHHHHHHhhhcccccccccccccccchhhHHHHHHHHHHHHHH
Q psy4183 592 AVLGGVTRMTGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALIAAFV 671 (898)
Q Consensus 592 A~lag~~raPltaivl~~Eltg~~~~~~~~li~~~~AagiAa~f~apl~g~lF~lE~l~~~~s~~~l~~~f~aSiiA~~v 671 (898)
....+.. .+++|+|.++.+++++++|++|++|++|.+|++||+.++++.+.+++++++|++|+++
T Consensus 134 --------------~~~~~~~-~~~~~~r~ll~aGaaAGlaAaF~APiaGvlFalE~~~~~~~~~~~~~~~~as~~a~~v 198 (416)
T cd01036 134 --------------VHLFQLF-RNPRDRRDFLVAGAAAGVASAFGAPIGGLLFVLEEVSTFFPVRLAWRVFFAALVSAFV 198 (416)
T ss_pred --------------cchhhhc-cCHHHHHHHHHHHhhcchhhccCCcceeeeeeeHHhhccccHHHHHHHHHHHHHHHHH
Confidence 0001111 2567788999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCcce----------eeeeeccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---cCCchhH
Q psy4183 672 LRSINPFGNEHSV----------LFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSR---LGQYPVT 738 (898)
Q Consensus 672 ~~~l~~~g~~~~~----------~f~~~~~~~~~~~~l~~~ilLGii~Gllg~lF~~l~~~~~~~~~~~~---~~~~~~~ 738 (898)
++.+......... .+..+...+++..++++++++|++||++|.+|+|.+++.++++++.+ .++++..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~illGv~~G~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (416)
T cd01036 199 IQIYNSFNSGFELLDRSSAMFLSLTVFELHVPLNLYEFIPTVVIGVICGLLAALFVRLSIIFLRWRRRLLFRKTARYRVL 278 (416)
T ss_pred HHHhccccCCccccccccccceeccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHH
Confidence 9987332221111 11223345677889999999999999999999999988888665432 2345677
Q ss_pred HHHHHHHHHHHhhccccccccchhhHHHHHhhhcCCCcCCCchhhHhhhcccccCCCCCCCCCCCChhhHHHHHHHHHHH
Q psy4183 739 EVLVITAITTLISFPNPFTRMSTSQLIYLLFSQCGGVSYNNGLCDYVINHNATSTSNPTTSEAGPGVYTAVWLLMITLVL 818 (898)
Q Consensus 739 ~~~~~~~i~g~l~~~~p~~~~~~~~~i~~~f~~~~g~~y~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~llv~ 818 (898)
++.+++++++.+.+ ...++.+++.
T Consensus 279 ~~~~~~~i~~~~~~--------------------------------------------------------~~~l~~~~~~ 302 (416)
T cd01036 279 EPVLFTLIYSTIHY--------------------------------------------------------APTLLLFLLI 302 (416)
T ss_pred HHHHHHHHHHHHHH--------------------------------------------------------HHHHHHHHHH
Confidence 78788887776652 0124456778
Q ss_pred HHHHHHHHhccCccccccchHhHHHHHHHHHHHHHHHHhhhcCCcchhccccCCCCCcCChHHHHHHHHHHHHHHhhcCC
Q psy4183 819 KLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECSTNDCITPGLYAMVGAAAVLGGVTRMT 898 (898)
Q Consensus 819 K~~~T~lt~gsG~pGGif~PsL~IGA~~G~l~G~ll~~l~~~~p~~~~~~~~~~~~~~~~p~~~AlvGmAa~lagvtrat 898 (898)
|+++|++|+++|+|||+|+|+|++||++|+++|.+++.+ +|+. .+ +-..+...+|+.||++||||++++++|++
T Consensus 303 K~~~t~~t~~sg~pGG~f~Psl~iGA~~G~~~g~~~~~~---~~~~--~~-~~~~~~~~~~~~~alvGmaa~l~~~~r~P 376 (416)
T cd01036 303 YFWMSALAFGIAVPGGTFIPSLVIGAAIGRLVGLLVHRI---AVAG--IG-AESATLWADPGVYALIGAAAFLGGTTRLT 376 (416)
T ss_pred HHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHH---cccc--cc-ccccCCccChHHHHHHHHHHHhhhhhcch
Confidence 999999999999999999999999999999999999876 3321 00 00011247899999999999999999975
No 25
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=100.00 E-value=4.7e-35 Score=349.32 Aligned_cols=346 Identities=24% Similarity=0.265 Sum_probs=259.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc------ccCCch----hHHHHHHHHHhhheecc-Cccccccc-----
Q psy4183 439 ELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMS------RLGQYP----VTEVLVITAITTLISFP-NPFTRMST----- 502 (898)
Q Consensus 439 ~l~~~lllGil~Gl~g~lF~~l~~~~~~~~~~~------~~~~~p----~~~~~l~glv~gll~~~-~p~~~g~g----- 502 (898)
.+...+++|+++|+++.+|.+..++.++.+... .....| .+.+++++++.+++.+. .++..+.+
T Consensus 24 ~~~~~~~vG~~~Gl~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ggli~~~~~~~~~~~~~~~g~~~~~ 103 (574)
T PRK01862 24 MLIWSAIVGIGGAFATTAFREGIELIQHLISGHSGSFVEMAKSLPWYVRVWLPAAGGFLAGCVLLLANRGARKGGKTDYM 103 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHhhcccHHHHHHHHHHHHHHHHHHHHHhccccccCCcHHHH
Confidence 456689999999999999999999888774321 011122 22234445665555432 22222111
Q ss_pred ---CCCCCchhHHHHHHHHHHHHHHHHHHHhcccccccccchhhhhhhHHHHHHHHHHHHhhhhcCccchhccccCCCCC
Q psy4183 503 ---KAGPGVYTAVWLLMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECSTNDC 579 (898)
Q Consensus 503 ---~~~~g~~~~~~~L~~~l~~K~l~t~ltlgsG~pGG~f~Psl~iGA~lG~l~G~l~~~l~~~~p~~~~~~~~~~~g~~ 579 (898)
..+.+.. -....+.|++.+++++++|.|.|+|+|++++||++|..+++.++.
T Consensus 104 ~~~~~~~~~~-----~~~~~~~k~~~~~l~i~~G~s~G~EgP~v~~ga~~~~~~~~~~~~-------------------- 158 (574)
T PRK01862 104 EAVALGDGVV-----PVRQSLWRSASSLLTIGSGGSIGREGPMVQLAALAASLVGRFAHF-------------------- 158 (574)
T ss_pred HHHHcCCCCC-----ChHHHHHHHHHHHHHHHcCCCcCCcchHHHHHHHHHHHHHHHhCC--------------------
Confidence 0011111 123556799999999999999999999999999999999976531
Q ss_pred CChhHHHHHHHHHHHhhhhccchhhhhccccccccchhhHHHHHHHHHHHHHHHHHhhhcccccccccccccccchhhHH
Q psy4183 580 ITPGLYAMVGAAAVLGGVTRMTGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLW 659 (898)
Q Consensus 580 i~p~~~alvGmaA~lag~~raPltaivl~~Eltg~~~~~~~~li~~~~AagiAa~f~apl~g~lF~lE~l~~~~s~~~l~ 659 (898)
+++++|.++.|++||++|++|++|++|.+|++|++.++++.+.++
T Consensus 159 -----------------------------------~~~~~r~l~~~G~aAglaa~F~aPl~g~lFa~E~~~~~~~~~~~~ 203 (574)
T PRK01862 159 -----------------------------------DPPRLRLLVACGAAAGITSAYNAPIAGAFFVAEIVLGSIAMESFG 203 (574)
T ss_pred -----------------------------------CHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhhhccHHHHH
Confidence 445678899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCCcceeeeeeccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhHH
Q psy4183 660 RSFFCALIAAFVLRSINPFGNEHSVLFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSRLGQYPVTE 739 (898)
Q Consensus 660 ~~f~aSiiA~~v~~~l~~~g~~~~~~f~~~~~~~~~~~~l~~~ilLGii~Gllg~lF~~l~~~~~~~~~~~~~~~~~~~~ 739 (898)
++++||++|+.+++.+ .|.++. |..+...+++..++++++++|++||++|.+|++..++.++++++ ++.++.++
T Consensus 204 ~~~~as~~a~~v~~~~--~g~~~~--~~~~~~~~~~~~~~~~~~~lGv~~G~~~~~f~~~~~~~~~~~~~--~~~~~~~~ 277 (574)
T PRK01862 204 PLVVASVVANIVMREF--AGYQPP--YEMPVFPAVTGWEVLLFVALGVLCGAAAPQFLRLLDASKNQFKR--LPVPLPVR 277 (574)
T ss_pred HHHHHHHHHHHHHHHH--cCCCce--eeCCCcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCchhHH
Confidence 9999999999999987 555444 44443445777899999999999999999999999888775443 23345567
Q ss_pred HHHHHHHHHHhhccccccccchhhHHHHHhhhcCCCcCCCchhhHhhhcccccCCCCCCCCCCCChhhHHHHHHHHHHHH
Q psy4183 740 VLVITAITTLISFPNPFTRMSTSQLIYLLFSQCGGVSYNNGLCDYVINHNATSTSNPTTSEAGPGVYTAVWLLMITLVLK 819 (898)
Q Consensus 740 ~~~~~~i~g~l~~~~p~~~~~~~~~i~~~f~~~~g~~y~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~llv~K 819 (898)
.++++++++++.+..|+ ..|++|+ ..+..++++ .....++.++++|
T Consensus 278 ~~~~gl~~g~l~~~~p~---------------~~g~G~~--~i~~~~~~~-----------------~~~~~l~~~~~~K 323 (574)
T PRK01862 278 LALGGLLVGVISVWVPE---------------VWGNGYS--VVNTILHAP-----------------WTWQALVAVLVAK 323 (574)
T ss_pred HHHHHHHHHHHHHHHHH---------------HhcCCHH--HHHHHHcCC-----------------chHHHHHHHHHHH
Confidence 77888888887765553 3444442 333333221 1233456677799
Q ss_pred HHHHHHHhccCccccccchHhHHHHHHHHHHHHHHHHhhhcCCcchhccccCCCCCcCChHHHHHHHHHHHHHHhhcCC
Q psy4183 820 LVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECSTNDCITPGLYAMVGAAAVLGGVTRMT 898 (898)
Q Consensus 820 ~~~T~lt~gsG~pGGif~PsL~IGA~~G~l~G~ll~~l~~~~p~~~~~~~~~~~~~~~~p~~~AlvGmAa~lagvtrat 898 (898)
+++|++|+|+|.|||+|+|++++||++|+++|++++.+ +|.. ..+|+.|+++||||++++++|++
T Consensus 324 ~~~t~~t~g~G~~GG~f~P~l~iGa~~G~~~g~~~~~~---~~~~-----------~~~~~~~a~vGmaa~~aa~~~aP 388 (574)
T PRK01862 324 LIATAATAGSGAVGGVFTPTLFVGAVVGSLFGLAMHAL---WPGH-----------TSAPFAYAMVGMGAFLAGATQAP 388 (574)
T ss_pred HHHHHHHHccCCCccchhhHHHHHHHHHHHHHHHHHHh---CCCc-----------ccchHHHHHHHHHHHHHHHHccH
Confidence 99999999999999999999999999999999998865 3321 14688899999999999999974
No 26
>cd01031 EriC ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.
Probab=100.00 E-value=2.3e-35 Score=337.57 Aligned_cols=343 Identities=25% Similarity=0.347 Sum_probs=258.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccc---CC-chhHH----HHHHHHHhhhee-ccCccccccc-----CCCCCchhH
Q psy4183 446 LGVIGGIIAYIFIRLNLKWCRYRKMSRL---GQ-YPVTE----VLVITAITTLIS-FPNPFTRMST-----KAGPGVYTA 511 (898)
Q Consensus 446 lGil~Gl~g~lF~~l~~~~~~~~~~~~~---~~-~p~~~----~~l~glv~gll~-~~~p~~~g~g-----~~~~g~~~~ 511 (898)
+|+++|+++.+|.+..++.++.+.+... .. .++.. ..+++++.+.+. ++.|+..+++ ...++....
T Consensus 1 iGi~~G~~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~p~~~g~G~~~v~~~l~~~~~~ 80 (402)
T cd01031 1 IGLLAGLVAVLFRLGIDKLGNLRLSLYDFAANNPPLLLVLPLISAVLGLLAGWLVKKFAPEAKGSGIPQVEGVLAGLLPP 80 (402)
T ss_pred CeehHhHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHHHHHcCCCCc
Confidence 4789999999999999998887644210 01 11111 223344444433 3467766655 111121111
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccccchhhhhhhHHHHHHHHHHHHhhhhcCccchhccccCCCCCCChhHHHHHHHH
Q psy4183 512 VWLLMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECSTNDCITPGLYAMVGAA 591 (898)
Q Consensus 512 ~~~L~~~l~~K~l~t~ltlgsG~pGG~f~Psl~iGA~lG~l~G~l~~~l~~~~p~~~~~~~~~~~g~~i~p~~~alvGma 591 (898)
......+.|++.+++++++|.|+|+|+|++++|+++|..+++.++.
T Consensus 81 --~~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iga~ig~~~~~~~~~-------------------------------- 126 (402)
T cd01031 81 --NWWRVLPVKFVGGVLALGSGLSLGREGPSVQIGAAIGQGVSKWFKT-------------------------------- 126 (402)
T ss_pred --ccHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHHhcC--------------------------------
Confidence 1245778999999999999999999999999999999999865421
Q ss_pred HHHhhhhccchhhhhccccccccchhhHHHHHHHHHHHHHHHHHhhhcccccccccccccccchhhHHHHHHHHHHHHHH
Q psy4183 592 AVLGGVTRMTGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALIAAFV 671 (898)
Q Consensus 592 A~lag~~raPltaivl~~Eltg~~~~~~~~li~~~~AagiAa~f~apl~g~lF~lE~l~~~~s~~~l~~~f~aSiiA~~v 671 (898)
+++|+|.++.++++++++++|++|+++.+|++|++.++++.+.+++.++++++|+++
T Consensus 127 -----------------------~~~~~~~l~~~g~aag~aa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~a~~~a~~v 183 (402)
T cd01031 127 -----------------------SPEERRQLIAAGAAAGLAAAFNAPLAGVLFVLEELRHSFSPLALLTALVASIAADFV 183 (402)
T ss_pred -----------------------CHHHHHHHHHHHHHHhHHHHhCCccHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Confidence 455688999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCcceeeeeeccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHhh
Q psy4183 672 LRSINPFGNEHSVLFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSRLGQYPVTEVLVITAITTLIS 751 (898)
Q Consensus 672 ~~~l~~~g~~~~~~f~~~~~~~~~~~~l~~~ilLGii~Gllg~lF~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~l~ 751 (898)
.+.+ .++++. +..+....++..++++++++|+++|++|.+|++.+.+.++++++.+ ++++.+++++++++++++.
T Consensus 184 ~~~~--~~~~~~--~~~~~~~~~~~~~l~~~illGv~~G~~g~~f~~~~~~~~~~~~~~~-~~~~~~~~~l~gl~~~~~~ 258 (402)
T cd01031 184 SRLF--FGLGPV--LSIPPLPALPLKSYWLLLLLGIIAGLLGYLFNRSLLKSQDLYRKLK-KLPRELRVLLPGLLIGPLG 258 (402)
T ss_pred HHHH--cCCCce--EecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCChhHHHHHHHHHHHHHH
Confidence 9986 555443 4444344577889999999999999999999999988888655431 3345677888888888887
Q ss_pred ccccccccchhhHHHHHhhhcCCCcCCCchhhHhhhcccccCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHhccCc
Q psy4183 752 FPNPFTRMSTSQLIYLLFSQCGGVSYNNGLCDYVINHNATSTSNPTTSEAGPGVYTAVWLLMITLVLKLVLTVFTFGIKV 831 (898)
Q Consensus 752 ~~~p~~~~~~~~~i~~~f~~~~g~~y~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~llv~K~~~T~lt~gsG~ 831 (898)
+..|+..+++.+ ..+...+++ + ....++.+++.|+++|++|+++|.
T Consensus 259 ~~~p~~~g~G~~-----------------~i~~~~~~~----------------~-~~~~l~~~~~~K~~~t~lt~~~G~ 304 (402)
T cd01031 259 LLLPEALGGGHG-----------------LILSLAGGN----------------F-SISLLLLIFVLRFIFTMLSYGSGA 304 (402)
T ss_pred HHHHHHhCCHHH-----------------HHHHHHcCC----------------c-hHHHHHHHHHHHHHHHHHHHhcCC
Confidence 666554333222 222222211 1 234556677899999999999999
Q ss_pred cccccchHhHHHHHHHHHHHHHHHHhhhcCCcchhccccCCCCCcCChHHHHHHHHHHHHHHhhcCC
Q psy4183 832 PCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECSTNDCITPGLYAMVGAAAVLGGVTRMT 898 (898)
Q Consensus 832 pGGif~PsL~IGA~~G~l~G~ll~~l~~~~p~~~~~~~~~~~~~~~~p~~~AlvGmAa~lagvtrat 898 (898)
+||+|+|++++||++|+++|++++.+ +|. ...+|+.|+++||+|++++++|++
T Consensus 305 ~GG~f~Psl~iGa~~G~~~g~~~~~~---~~~-----------~~~~~~~~a~~G~aa~~a~~~~aP 357 (402)
T cd01031 305 PGGIFAPMLALGALLGLLFGTILVQL---GPI-----------PISAPATFAIAGMAAFFAAVVRAP 357 (402)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHh---cCc-----------ccccHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999865 342 126899999999999999999974
No 27
>cd03685 ClC_6_like ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.
Probab=100.00 E-value=1.2e-34 Score=336.21 Aligned_cols=349 Identities=33% Similarity=0.544 Sum_probs=246.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc---cCCc----hh----HHHHHHHHHhhhee-ccCccccccc---
Q psy4183 438 FELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSR---LGQY----PV----TEVLVITAITTLIS-FPNPFTRMST--- 502 (898)
Q Consensus 438 ~~l~~~lllGil~Gl~g~lF~~l~~~~~~~~~~~~---~~~~----p~----~~~~l~glv~gll~-~~~p~~~g~g--- 502 (898)
..+...+++|+++|+++.+|.+.++++++.+.... .... ++ ...++.+++.+++. +..|+..++|
T Consensus 31 ~~w~l~ilvGi~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~p~a~GsGip~ 110 (466)
T cd03685 31 LKWIICLLIGIFTGLVAYFIDLAVENLAGLKFLVVKNYIEKGRLFTAFLVYLGLNLVLVLVAALLVAYIAPTAAGSGIPE 110 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHH
Confidence 34456699999999999999999999887743210 1011 11 12233445555543 3567766655
Q ss_pred --CCCCCchhHHHHHHHHHHHHHHHHHHHhcccccccccchhhhhhhHHHHHHHHHHHHhhhhcCccchhccccCCCCCC
Q psy4183 503 --KAGPGVYTAVWLLMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECSTNDCI 580 (898)
Q Consensus 503 --~~~~g~~~~~~~L~~~l~~K~l~t~ltlgsG~pGG~f~Psl~iGA~lG~l~G~l~~~l~~~~p~~~~~~~~~~~g~~i 580 (898)
...+|.......-...++.|++.+.+++++|.|.|+|+|++++||.+|..+++...... . .
T Consensus 111 v~~~l~g~~~~~~l~~r~~~~K~i~~~l~vgsG~s~GrEGP~v~iGa~ig~~~~~~~~~~~---~--------------~ 173 (466)
T cd03685 111 VKGYLNGVKIPHILRLKTLLVKIVGVILSVSGGLALGKEGPMIHIGACIAAGLSQGGSTSL---R--------------L 173 (466)
T ss_pred HHHHHcCcCccccchHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHhhcccccc---c--------------c
Confidence 11122111111124567899999999999999999999999999999999986421000 0 0
Q ss_pred ChhHHHHHHHHHHHhhhhccchhhhhccccccccchhhHHHHHHHHHHHHHHHHHhhhcccccccccccccccchhhHHH
Q psy4183 581 TPGLYAMVGAAAVLGGVTRMTGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWR 660 (898)
Q Consensus 581 ~p~~~alvGmaA~lag~~raPltaivl~~Eltg~~~~~~~~li~~~~AagiAa~f~apl~g~lF~lE~l~~~~s~~~l~~ 660 (898)
+ .-.++.. ++++|+|.++.+++|+++|++|++|++|.+|++||+.++++.+..++
T Consensus 174 ~------------------------~~~~~~~-~~~~~~r~li~~GaAAGlaaaF~APl~G~lFa~E~l~~~~~~~~~~~ 228 (466)
T cd03685 174 D------------------------FRWFRYF-RNDRDKRDFVTCGAAAGVAAAFGAPVGGVLFSLEEVASFWNQALTWR 228 (466)
T ss_pred c------------------------hhhhhhc-cCHHHHHHHHHHHhhcchhhccCCCcceeeeeeehhhhhcchhHHHH
Confidence 0 0001111 25667889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccC-CCCcc--------eeeee-eccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy4183 661 SFFCALIAAFVLRSINPF-GNEHS--------VLFYV-EYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMS 730 (898)
Q Consensus 661 ~f~aSiiA~~v~~~l~~~-g~~~~--------~~f~~-~~~~~~~~~~l~~~ilLGii~Gllg~lF~~l~~~~~~~~~~~ 730 (898)
.+++|++|+.+++.+... +..+. ..+.. ....+++..++++++++|++||++|.+|++++++.++++++.
T Consensus 229 ~l~~s~ias~va~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~illGi~~Gl~g~~f~~~~~~~~~~~~~~ 308 (466)
T cd03685 229 TFFSSMIVTFTLNFFLSGCNSGKCGLFGPGGLIMFDGSSTKYLYTYFELIPFMLIGVIGGLLGALFNHLNHKVTRFRKRI 308 (466)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCccccCCccceecccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999988888765221 11111 11222 223457788999999999999999999999999888866653
Q ss_pred c--cCCchhHHHHHHHHHHHHhhccccccccchhhHHHHHhhhcCCCcCCCchhhHhhhcccccCCCCCCCCCCCChhhH
Q psy4183 731 R--LGQYPVTEVLVITAITTLISFPNPFTRMSTSQLIYLLFSQCGGVSYNNGLCDYVINHNATSTSNPTTSEAGPGVYTA 808 (898)
Q Consensus 731 ~--~~~~~~~~~~~~~~i~g~l~~~~p~~~~~~~~~i~~~f~~~~g~~y~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 808 (898)
+ ..+++.....+++.+++.+.+
T Consensus 309 ~~~~~~~~~l~~~lv~~~~~~~~~-------------------------------------------------------- 332 (466)
T cd03685 309 NHKGKLLKVLEALLVSLVTSVVAF-------------------------------------------------------- 332 (466)
T ss_pred ccccchhHHHHHHHHHHHHHHHHH--------------------------------------------------------
Confidence 2 222234444444444443321
Q ss_pred HHHHHHHHHHHHHHHHHHhccCccccccchHhHHHHHHHHHHHHHHHHhhhcCCcchhccccCCCCCcCChHHHHHHHHH
Q psy4183 809 VWLLMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECSTNDCITPGLYAMVGAA 888 (898)
Q Consensus 809 ~~~Ll~llv~K~~~T~lt~gsG~pGGif~PsL~IGA~~G~l~G~ll~~l~~~~p~~~~~~~~~~~~~~~~p~~~AlvGmA 888 (898)
...++.++++|+++|++|+|+|.|||+|+|+|++||++|+++|.+++.+ +|. ...+|+.|+++|||
T Consensus 333 ~~~l~~~~~~k~l~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~---~~~-----------~~~~~~~~aliGma 398 (466)
T cd03685 333 PQTLLIFFVLYYFLACWTFGIAVPSGLFIPMILIGAAYGRLVGILLGSY---FGF-----------TSIDPGLYALLGAA 398 (466)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHH---ccc-----------cCCCchHHHHHHHH
Confidence 0123445568999999999999999999999999999999999998865 221 13689999999999
Q ss_pred HHHHHhhcCC
Q psy4183 889 AVLGGVTRMT 898 (898)
Q Consensus 889 a~lagvtrat 898 (898)
|++++++|++
T Consensus 399 a~lag~~raP 408 (466)
T cd03685 399 AFLGGVMRMT 408 (466)
T ss_pred HHHhHHhhhh
Confidence 9999999975
No 28
>cd01033 ClC_like Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=2.9e-34 Score=326.45 Aligned_cols=333 Identities=22% Similarity=0.261 Sum_probs=251.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcc----------cC-CchhHHHHHHHHHhhheeccCccccccc-------CCCCCc
Q psy4183 447 GVIGGIIAYIFIRLNLKWCRYRKMSR----------LG-QYPVTEVLVITAITTLISFPNPFTRMST-------KAGPGV 508 (898)
Q Consensus 447 Gil~Gl~g~lF~~l~~~~~~~~~~~~----------~~-~~p~~~~~l~glv~gll~~~~p~~~g~g-------~~~~g~ 508 (898)
|+++|+.+.+|.+..++.++...... .+ .++++-+++++++++++.+..+ ..+++ ..+.+.
T Consensus 1 G~~~gl~a~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ggl~~~l~~~~~~-~~g~gi~~v~~~~~~~~~ 79 (388)
T cd01033 1 GVGAGLGGGLLTLLLHGVQHLAFGYSEGSFLTGVAAVSPIRRALSLTVGGLIAGLGWYLLR-RKGKKLVSIKQAVRGKKR 79 (388)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCccccchhhhccCChHHHHHHHHHHHHHHHHHHHHHh-ccCCCcccHHHHhcCCCC
Confidence 67899999999999998887643211 00 1233445666777776654433 22222 001111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcccccccccchhhhhhhHHHHHHHHHHHHhhhhcCccchhccccCCCCCCChhHHHHH
Q psy4183 509 YTAVWLLMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECSTNDCITPGLYAMV 588 (898)
Q Consensus 509 ~~~~~~L~~~l~~K~l~t~ltlgsG~pGG~f~Psl~iGA~lG~l~G~l~~~l~~~~p~~~~~~~~~~~g~~i~p~~~alv 588 (898)
. -....+.|.+.+.+++++|.+.|+|+|++++|+++|..+++.++.
T Consensus 80 -~----~~~~~~~k~~~~~l~ig~G~s~G~EGP~v~iGa~i~~~~~~~~~~----------------------------- 125 (388)
T cd01033 80 -M----PFWETIIHAVLQIVTVGLGAPLGREVAPREVGALLAQRFSDWLGL----------------------------- 125 (388)
T ss_pred -C----CHHHHHHHHHHHHhhhhcCCCcCcccHHHHHHHHHHHHHHHHhCC-----------------------------
Confidence 1 123456899999999999999999999999999999998876531
Q ss_pred HHHHHHhhhhccchhhhhccccccccchhhHHHHHHHHHHHHHHHHHhhhcccccccccccccccchhhHHHHHHHHHHH
Q psy4183 589 GAAAVLGGVTRMTGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALIA 668 (898)
Q Consensus 589 GmaA~lag~~raPltaivl~~Eltg~~~~~~~~li~~~~AagiAa~f~apl~g~lF~lE~l~~~~s~~~l~~~f~aSiiA 668 (898)
+++|+|.++.|++++++|++|++|++|.+|++|++.++++.+.+++++++|++|
T Consensus 126 --------------------------~~~~~r~li~~GaaAGlaa~F~aPlaG~lFalE~~~~~~~~~~~~~~~~as~~a 179 (388)
T cd01033 126 --------------------------TVADRRLLVACAAGAGLAAVYNVPLAGALFALEILLRTISLRSVVAALATSAIA 179 (388)
T ss_pred --------------------------CHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 566789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCcceeeeeeccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHH
Q psy4183 669 AFVLRSINPFGNEHSVLFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSRLGQYPVTEVLVITAITT 748 (898)
Q Consensus 669 ~~v~~~l~~~g~~~~~~f~~~~~~~~~~~~l~~~ilLGii~Gllg~lF~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~g 748 (898)
+.+++.+ .|+++. |..+ +.+.+..++++++++|+++|++|.+|++.+++.++.+++. +++.+++.+++++++
T Consensus 180 ~~v~~~~--~g~~~~--f~~~-~~~~~~~~l~~~illGi~~Gl~~~lf~~~~~~~~~~~~~~---~~~~~~~~l~gl~~g 251 (388)
T cd01033 180 AAVASLL--KGDHPI--YDIP-PMQLSTPLLIWALLAGPVLGVVAAGFRRLSQAARAKRPKG---KRILWQMPLAFLVIG 251 (388)
T ss_pred HHHHHHh--CCCCce--eecC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cchHHHHHHHHHHHH
Confidence 9999987 565554 3333 2234467888899999999999999999998888754422 233456677788888
Q ss_pred HhhccccccccchhhHHHHHhhhcCCCcCCCchhhHhhhcccccCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHhc
Q psy4183 749 LISFPNPFTRMSTSQLIYLLFSQCGGVSYNNGLCDYVINHNATSTSNPTTSEAGPGVYTAVWLLMITLVLKLVLTVFTFG 828 (898)
Q Consensus 749 ~l~~~~p~~~~~~~~~i~~~f~~~~g~~y~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~llv~K~~~T~lt~g 828 (898)
++.+..|+ ..|++| +..+..++++. ....++.+++.|+++|++|+|
T Consensus 252 ~~~~~~p~---------------~~G~G~--~~i~~~~~~~~-----------------~~~~ll~~~~~K~~~t~lt~g 297 (388)
T cd01033 252 LLSIFFPQ---------------ILGNGR--ALAQLAFSTTL-----------------TLSLLLILLVLKIVATLLALR 297 (388)
T ss_pred HHHHHHHH---------------HhCCcH--HHHHHHHcCCc-----------------hHHHHHHHHHHHHHHHHHHHc
Confidence 77655543 344433 23444333221 233456677899999999999
Q ss_pred cCccccccchHhHHHHHHHHHHHHHHHHhhhcCCcchhccccCCCCCcCChHHHHHHHHHHHHHHhhcCC
Q psy4183 829 IKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECSTNDCITPGLYAMVGAAAVLGGVTRMT 898 (898)
Q Consensus 829 sG~pGGif~PsL~IGA~~G~l~G~ll~~l~~~~p~~~~~~~~~~~~~~~~p~~~AlvGmAa~lagvtrat 898 (898)
+|.+||+|.|++++||++|+++|++++.. +|+ .++..|+++||+|++++++|++
T Consensus 298 sG~~GG~f~P~l~iGa~~G~~~g~~~~~~---~p~-------------~~~~~~a~~GmaA~laa~~~aP 351 (388)
T cd01033 298 AGAYGGLLTPSLALGALLGALLGIVWNAL---LPP-------------LSIAAFALIGAAAFLAATQKAP 351 (388)
T ss_pred cCCCccchHHHHHHHHHHHHHHHHHHHHh---CCc-------------ccHHHHHHHHHHHHHHHHHhhH
Confidence 99999999999999999999999998764 343 5789999999999999999974
No 29
>PRK05277 chloride channel protein; Provisional
Probab=100.00 E-value=1.1e-33 Score=326.90 Aligned_cols=350 Identities=24% Similarity=0.340 Sum_probs=251.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc--ccCCch---hHHHHHHHHHhhhee-----ccCccccccc-----CCC
Q psy4183 441 IPFVGLGVIGGIIAYIFIRLNLKWCRYRKMS--RLGQYP---VTEVLVITAITTLIS-----FPNPFTRMST-----KAG 505 (898)
Q Consensus 441 ~~~lllGil~Gl~g~lF~~l~~~~~~~~~~~--~~~~~p---~~~~~l~glv~gll~-----~~~p~~~g~g-----~~~ 505 (898)
...+++|+++|+++.+|.+.+++.++++... ....++ +...++.+.+.+.+. .+.|+..+++ ...
T Consensus 2 ~~~i~iGi~~Gl~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~p~~~GsGi~~i~~~l 81 (438)
T PRK05277 2 FMAAVVGTLTGLVGVAFELAVDWVQNQRLGLLASVADNGLLLWIVAFLISAVLAMIGYFLVRRFAPEAGGSGIPEIEGAL 81 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHH
Confidence 4678999999999999999999988876432 011111 111222222222222 3456655554 001
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhcccccccccchhhhhhhHHHHHHHHHHHHhhhhcCccchhccccCCCCCCChhHH
Q psy4183 506 PGVYTAVWLLMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECSTNDCITPGLY 585 (898)
Q Consensus 506 ~g~~~~~~~L~~~l~~K~l~t~ltlgsG~pGG~f~Psl~iGA~lG~l~G~l~~~l~~~~p~~~~~~~~~~~g~~i~p~~~ 585 (898)
++.... .....+..|++.+.+++++|.|+|+|+|++++|+.+|..+++.++.
T Consensus 82 ~~~~~~--~~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iGa~ig~~~~~~~~~-------------------------- 133 (438)
T PRK05277 82 EGLRPV--RWWRVLPVKFFGGLGTLGSGMVLGREGPTVQMGGNIGRMVLDIFRL-------------------------- 133 (438)
T ss_pred cCCCcc--chHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHHccc--------------------------
Confidence 111111 1123567899999999999999999999999999999999865421
Q ss_pred HHHHHHHHHhhhhccchhhhhccccccccchhhHHHHHHHHHHHHHHHHHhhhcccccccccccccc--cchhhHHHHHH
Q psy4183 586 AMVGAAAVLGGVTRMTGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSYY--FPLKTLWRSFF 663 (898)
Q Consensus 586 alvGmaA~lag~~raPltaivl~~Eltg~~~~~~~~li~~~~AagiAa~f~apl~g~lF~lE~l~~~--~s~~~l~~~f~ 663 (898)
.+++|+|.++.+++++++|++|++|++|.+|++|++.++ ++.+.+++.++
T Consensus 134 ----------------------------~~~~~~~~li~~G~aaglaa~f~APl~g~lf~~E~~~~~~~~~~~~~~~~~~ 185 (438)
T PRK05277 134 ----------------------------RSDEARHTLLAAGAAAGLAAAFNAPLAGILFVIEEMRPQFRYSLISIKAVFI 185 (438)
T ss_pred ----------------------------CCHHHHHHHHHHHHHHhHHHhcCCchHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 044568889999999999999999999999999999874 47778999999
Q ss_pred HHHHHHHHHHHhccCCCCcceeeeeeccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC-Cc-hhHHHH
Q psy4183 664 CALIAAFVLRSINPFGNEHSVLFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSRLG-QY-PVTEVL 741 (898)
Q Consensus 664 aSiiA~~v~~~l~~~g~~~~~~f~~~~~~~~~~~~l~~~ilLGii~Gllg~lF~~l~~~~~~~~~~~~~~-~~-~~~~~~ 741 (898)
++++|+.+.+.+ .++++. +..+....++..++++++++|+++|++|.+|++++.+.++++++.+.+ .+ +.....
T Consensus 186 a~~~a~~v~~~~--~g~~~~--~~~~~~~~~~~~~l~~~i~lGi~~G~~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (438)
T PRK05277 186 GVIMATIVFRLF--NGEQAV--IEVGKFSAPPLNTLWLFLLLGIIFGIFGVLFNKLLLRTQDLFDRLHGGNKKRWVLMGG 261 (438)
T ss_pred HHHHHHHHHHHh--cCCCce--EeccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 999999999987 444433 333322234567889999999999999999999998888765542221 11 122345
Q ss_pred HHHHHHHHhhccccccccchhhHHHHHhhhcCCCcCCCchhhHhhhcccccCCCCCCCCCCCChhhHHHHHHHHHHHHHH
Q psy4183 742 VITAITTLISFPNPFTRMSTSQLIYLLFSQCGGVSYNNGLCDYVINHNATSTSNPTTSEAGPGVYTAVWLLMITLVLKLV 821 (898)
Q Consensus 742 ~~~~i~g~l~~~~p~~~~~~~~~i~~~f~~~~g~~y~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~llv~K~~ 821 (898)
+++++++.+.+..|.. .|++| +..+...+++ + ....++.+++.|++
T Consensus 262 i~gl~~g~l~~~~p~~---------------~g~G~--~~i~~~~~~~----------------~-~~~~l~~~~~~K~i 307 (438)
T PRK05277 262 AVGGLCGLLGLLAPAA---------------VGGGF--NLIPIALAGN----------------F-SIGMLLFIFVARFI 307 (438)
T ss_pred HHHHHHHHHHHHhhhh---------------cCChH--HHHHHHHcCC----------------c-hHHHHHHHHHHHHH
Confidence 5666677666555543 44433 2333333221 1 23345667789999
Q ss_pred HHHHHhccCccccccchHhHHHHHHHHHHHHHHHHhhhcCCcchhccccCCCCCcCChHHHHHHHHHHHHHHhhcCC
Q psy4183 822 LTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECSTNDCITPGLYAMVGAAAVLGGVTRMT 898 (898)
Q Consensus 822 ~T~lt~gsG~pGGif~PsL~IGA~~G~l~G~ll~~l~~~~p~~~~~~~~~~~~~~~~p~~~AlvGmAa~lagvtrat 898 (898)
+|++|+|+|.+||+|+|++++||++|+++|.+++.+ +|+. ..+|..|+++||+|++++++|++
T Consensus 308 ~t~ls~gsG~~GG~f~Psl~iGa~~G~~~g~~~~~~---~p~~-----------~~~~~~~a~~G~aA~la~~~~aP 370 (438)
T PRK05277 308 TTLLCFGSGAPGGIFAPMLALGTLLGLAFGMVAAAL---FPQY-----------HIEPGTFAIAGMGALFAATVRAP 370 (438)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH---cCcc-----------cccHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999999999998865 4431 26899999999999999999974
No 30
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease.; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....
Probab=100.00 E-value=1.7e-34 Score=325.08 Aligned_cols=283 Identities=32% Similarity=0.545 Sum_probs=218.4
Q ss_pred HHHHHHHHHHHHHHhcccccccccchhhhhhhHHHHHHHHHHHHhhhhcCccchhccccCCCCCCChhHHHHHHHHHHHh
Q psy4183 516 MITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECSTNDCITPGLYAMVGAAAVLG 595 (898)
Q Consensus 516 ~~~l~~K~l~t~ltlgsG~pGG~f~Psl~iGA~lG~l~G~l~~~l~~~~p~~~~~~~~~~~g~~i~p~~~alvGmaA~la 595 (898)
....+.|++.+.+++++|.|.|+|+|+.++|+++|+.+++.++.
T Consensus 38 ~~~~~~k~~~~~~s~~~G~s~G~EGp~v~iga~i~~~~~~~~~~------------------------------------ 81 (355)
T PF00654_consen 38 FRTLPVKFVGSILSLGSGLSVGREGPSVQIGAAIGSWLGRRFRL------------------------------------ 81 (355)
T ss_dssp HHHHHHHHHHHHHHHHTT-S-BSHHHHHHHHHHHHHHHHHHTT-------------------------------------
T ss_pred HHHHHHHHHHHHHHHhcCCCCcCccHHHHHHHHHHHHHHHhhcc------------------------------------
Confidence 55778999999999999999999999999999999999976421
Q ss_pred hhhccchhhhhccccccccchhhHHHHHHHHHHHHHHHHHhhhcccccccccccccccchhhHHHHHHHHHHHHHHHHHh
Q psy4183 596 GVTRMTGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALIAAFVLRSI 675 (898)
Q Consensus 596 g~~raPltaivl~~Eltg~~~~~~~~li~~~~AagiAa~f~apl~g~lF~lE~l~~~~s~~~l~~~f~aSiiA~~v~~~l 675 (898)
++++++|.++.+++++++|++|++|++|.+|++|++.++++.+.+++++++|++|+++++.+
T Consensus 82 ------------------~~~~~~r~l~~~g~aAglaa~F~aPlaG~lFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~ 143 (355)
T PF00654_consen 82 ------------------SRNETRRLLLAAGAAAGLAAAFNAPLAGVLFALEELSRDFSVRLLLPALVASIVATLVSRLL 143 (355)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHCCTCHCCSTTTHHHHHHHHHHHHHHHHHH
T ss_pred ------------------cchHHHhHHHHHHHHHHHHHHhcCCcccceehhheeeccccchhhHHHHHHHHHHHHHHHHH
Confidence 02332667999999999999999999999999999999999999999999999999999997
Q ss_pred ccCCCCcceeee-eeccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-ccCCchhHHHHHHHHHHHHhhcc
Q psy4183 676 NPFGNEHSVLFY-VEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMS-RLGQYPVTEVLVITAITTLISFP 753 (898)
Q Consensus 676 ~~~g~~~~~~f~-~~~~~~~~~~~l~~~ilLGii~Gllg~lF~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~i~g~l~~~ 753 (898)
.++++. |. .+...+++..++++++++|++||++|.+|+|++++.++.+++. +.++++.+++++.+++++++.+.
T Consensus 144 --~~~~~~--f~~~~~~~~~~~~~~~~~~llGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~l~~~i~gl~~g~l~~~ 219 (355)
T PF00654_consen 144 --FGNHPI--FGSVPQLFPFSLWELPLFLLLGIICGLLGALFNRLLRWLRKFFRKLKRLKIPPILRPVIGGLVIGLLAFF 219 (355)
T ss_dssp --HTSS-S--S---TT-----GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHS
T ss_pred --cCcCcc--cccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH
Confidence 555544 43 4434478889999999999999999999999999888865543 23334567899999999999988
Q ss_pred ccccccchhhHHHHHhhhcCCCcCCCchhhHhhhcccccCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHhccCccc
Q psy4183 754 NPFTRMSTSQLIYLLFSQCGGVSYNNGLCDYVINHNATSTSNPTTSEAGPGVYTAVWLLMITLVLKLVLTVFTFGIKVPC 833 (898)
Q Consensus 754 ~p~~~~~~~~~i~~~f~~~~g~~y~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~llv~K~~~T~lt~gsG~pG 833 (898)
.|+. +..|++| +..+.+++++.. ......++.+++.|+++|++|+++|++|
T Consensus 220 ~p~~-------------~~~g~G~--~~i~~ll~~~~~--------------~~~~~~l~~~~~~K~~~t~lt~~~G~~G 270 (355)
T PF00654_consen 220 FPEG-------------SVLGSGY--ELIQSLLSGSPP--------------WFSLGSLLLLFLLKFLATALTLGSGAPG 270 (355)
T ss_dssp SGG--------------SGSSSST--THHHHHCTT------------------S-HHHHHHHHHHHHHHHHHHHHTT-BS
T ss_pred Hhhh-------------cccCCcH--HHHHHHHcCCcc--------------hhhHHHHHHHHHHHHHHHHHhcCccCCC
Confidence 7751 1244433 233434432210 1145667888899999999999999999
Q ss_pred cccchHhHHHHHHHHHHHHHHHHhhhcCCcchhccccCCCCCcCChHHHHHHHHHHHHHHhhcCC
Q psy4183 834 GLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECSTNDCITPGLYAMVGAAAVLGGVTRMT 898 (898)
Q Consensus 834 Gif~PsL~IGA~~G~l~G~ll~~l~~~~p~~~~~~~~~~~~~~~~p~~~AlvGmAa~lagvtrat 898 (898)
|+|+|++++||++|++++.+++.. +|+. ...+|+.|+++||+|++++++|++
T Consensus 271 G~f~Psl~iGa~~G~~~~~~~~~~---~~~~----------~~~~~~~~al~G~~a~~~a~~~~P 322 (355)
T PF00654_consen 271 GIFFPSLFIGAALGRLFGALLGSF---FPGI----------SSVDPGVYALVGMAAFLAAVTRAP 322 (355)
T ss_dssp BSHHHHHHHHHHHHHHHHHHHHHH----GGG-----------T-SHHHHHHHHTTHHHHHHCS-H
T ss_pred CEEccHHHHHHHHHHHHHHHHHhh---CCCc----------CCCchHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999876 4431 113799999999999999999973
No 31
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore
Probab=100.00 E-value=1.2e-33 Score=321.73 Aligned_cols=341 Identities=26% Similarity=0.371 Sum_probs=259.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccc------CC---chhHHHHHHHHHhhheeccCcccccccC-----CCCCchhHH
Q psy4183 447 GVIGGIIAYIFIRLNLKWCRYRKMSRL------GQ---YPVTEVLVITAITTLISFPNPFTRMSTK-----AGPGVYTAV 512 (898)
Q Consensus 447 Gil~Gl~g~lF~~l~~~~~~~~~~~~~------~~---~p~~~~~l~glv~gll~~~~p~~~g~g~-----~~~g~~~~~ 512 (898)
|+++|+.+.+|.+.+++.++++.+... .. ++.+...+++++++++....+...+.+. ..++...
T Consensus 1 Gi~~Gl~~~lf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~l~~~~~~~~~g~G~~~v~~~~~~~~~-- 78 (383)
T cd00400 1 GVLSGLGAVLFRLLIELLQNLLFGGLPGELAAGSLSPLYILLVPVIGGLLVGLLVRLLGPARGHGIPEVIEAIALGGG-- 78 (383)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHHHhCcccCCChHHHHHHHHhCCC--
Confidence 688999999999999998887654311 11 1234455666666666655443333320 0000000
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccccchhhhhhhHHHHHHHHHHHHhhhhcCccchhccccCCCCCCChhHHHHHHHHH
Q psy4183 513 WLLMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECSTNDCITPGLYAMVGAAA 592 (898)
Q Consensus 513 ~~L~~~l~~K~l~t~ltlgsG~pGG~f~Psl~iGA~lG~l~G~l~~~l~~~~p~~~~~~~~~~~g~~i~p~~~alvGmaA 592 (898)
.......+.|++.+.+++++|.|+|+|+|++++|+++|..+++.++.
T Consensus 79 ~~~~~~~~~k~l~~~l~~~~G~s~G~egP~v~iGa~~g~~~~~~~~~--------------------------------- 125 (383)
T cd00400 79 RLPLRVALVKFLASALTLGSGGSVGREGPIVQIGAAIGSWLGRRLRL--------------------------------- 125 (383)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHhCC---------------------------------
Confidence 01245778999999999999999999999999999999999875421
Q ss_pred HHhhhhccchhhhhccccccccchhhHHHHHHHHHHHHHHHHHhhhcccccccccccccccchhhHHHHHHHHHHHHHHH
Q psy4183 593 VLGGVTRMTGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALIAAFVL 672 (898)
Q Consensus 593 ~lag~~raPltaivl~~Eltg~~~~~~~~li~~~~AagiAa~f~apl~g~lF~lE~l~~~~s~~~l~~~f~aSiiA~~v~ 672 (898)
+++|++.++.++++++++++|++|+++.+|++|+..++++.+.++++++++++|+.++
T Consensus 126 ----------------------~~~~~~~l~~~G~aaglaa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~a~~v~ 183 (383)
T cd00400 126 ----------------------SRNDRRILVACGAAAGIAAAFNAPLAGALFAIEVLLGEYSVASLIPVLLASVAAALVS 183 (383)
T ss_pred ----------------------CHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 4556889999999999999999999999999999999998899999999999999999
Q ss_pred HHhccCCCCcceeeeeeccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHhhc
Q psy4183 673 RSINPFGNEHSVLFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSRLGQYPVTEVLVITAITTLISF 752 (898)
Q Consensus 673 ~~l~~~g~~~~~~f~~~~~~~~~~~~l~~~ilLGii~Gllg~lF~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~l~~ 752 (898)
+.+ .++++ .+..+...+++..++++++++|+++|++|.+|++++.+.+|++++ .++++.+++.+++++++.+.+
T Consensus 184 ~~~--~~~~~--~~~~~~~~~~~~~~~~~~il~Gv~~g~~g~~f~~~~~~~~~~~~~--~~~~~~~~~~i~gll~~~~~~ 257 (383)
T cd00400 184 RLL--FGAEP--AFGVPLYDPLSLLELPLYLLLGLLAGLVGVLFVRLLYKIERLFRR--LPIPPWLRPALGGLLLGLLGL 257 (383)
T ss_pred HHH--cCCCC--eeeCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCcHHHHHHHHHHHHHHHHH
Confidence 986 34333 344444567888899999999999999999999999988886553 234567788888888888776
Q ss_pred cccccccchhhHHHHHhhhcCCCcCCCchhhHhhhcccccCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHhccCcc
Q psy4183 753 PNPFTRMSTSQLIYLLFSQCGGVSYNNGLCDYVINHNATSTSNPTTSEAGPGVYTAVWLLMITLVLKLVLTVFTFGIKVP 832 (898)
Q Consensus 753 ~~p~~~~~~~~~i~~~f~~~~g~~y~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~llv~K~~~T~lt~gsG~p 832 (898)
..|+. .|++++ ..+...+++ + ....++..++.|+++|++|+++|.|
T Consensus 258 ~~p~~---------------~g~G~~--~~~~~~~~~----------------~-~~~~l~~~~~~K~~~t~l~~~sG~~ 303 (383)
T cd00400 258 FLPQV---------------LGSGYG--AILLALAGE----------------L-SLLLLLLLLLLKLLATALTLGSGFP 303 (383)
T ss_pred HHHHH---------------HcCcHH--HHHHHHcCC----------------h-hHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 66544 333332 112111111 1 2334556778999999999999999
Q ss_pred ccccchHhHHHHHHHHHHHHHHHHhhhcCCcchhccccCCCCCcCChHHHHHHHHHHHHHHhhcCC
Q psy4183 833 CGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECSTNDCITPGLYAMVGAAAVLGGVTRMT 898 (898)
Q Consensus 833 GGif~PsL~IGA~~G~l~G~ll~~l~~~~p~~~~~~~~~~~~~~~~p~~~AlvGmAa~lagvtrat 898 (898)
||.|.|++++||++|++++++++.+ +|. +..+|..++++||+|++++++|++
T Consensus 304 GG~~~P~l~iGa~~G~~~~~~~~~~---~~~-----------~~~~~~~~~~~G~aa~la~~~~aP 355 (383)
T cd00400 304 GGVFAPSLFIGAALGAAFGLLLPAL---FPG-----------LVASPGAYALVGMAALLAAVLRAP 355 (383)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHh---CCc-----------ccCChHHHHHHHHHHHHHHHhCch
Confidence 9999999999999999999998865 332 136899999999999999999984
No 32
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.9e-33 Score=320.43 Aligned_cols=306 Identities=27% Similarity=0.394 Sum_probs=237.1
Q ss_pred HHHHHHHhh--heeccCcccccccC-----CCCCchhHHHHHHHHHHHHHHHHHHHhcccccccccchhhhhhhHHHHHH
Q psy4183 481 VLVITAITT--LISFPNPFTRMSTK-----AGPGVYTAVWLLMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIV 553 (898)
Q Consensus 481 ~~l~glv~g--ll~~~~p~~~g~g~-----~~~g~~~~~~~L~~~l~~K~l~t~ltlgsG~pGG~f~Psl~iGA~lG~l~ 553 (898)
....+++.+ .+..+.|+.++++. ..++.. ..........|.+.+.+++++|.+.|+|+|++++|+.+|+.+
T Consensus 70 ~~~~gl~~g~~~~~~~~p~~~g~Gi~~~i~a~~~~~--~~~~~~~~~vk~~~~~l~i~sG~s~GrEGP~vqiga~~g~~~ 147 (443)
T COG0038 70 PALGGLLVGALLVYKFAPEARGSGIPQAIEALHGRK--GRISPRVLPVKLVATLLTIGSGASLGREGPSVQIGAAIGSLL 147 (443)
T ss_pred HHHHHHHHHHHHHHHhCccccCCChhHHHHHHhcCC--CcccHHHHHHHHHHHHHHHhcCcccccccHHHHHHHHHHHHH
Confidence 445666666 33445666665541 011100 012234566799999999999999999999999999999999
Q ss_pred HHHHHHhhhhcCccchhccccCCCCCCChhHHHHHHHHHHHhhhhccchhhhhccccccccchhhHHHHHHHHHHHHHHH
Q psy4183 554 GIGMQQLAFHYPHIWIFAGECSTNDCITPGLYAMVGAAAVLGGVTRMTGNILSYLFPKYGRNEAKKREILSAAAAAGVSV 633 (898)
Q Consensus 554 G~l~~~l~~~~p~~~~~~~~~~~g~~i~p~~~alvGmaA~lag~~raPltaivl~~Eltg~~~~~~~~li~~~~AagiAa 633 (898)
++.++. +++|+|.++.+++|+++|+
T Consensus 148 ~~~l~~-------------------------------------------------------~~~~~r~Ll~~GaAaGlaa 172 (443)
T COG0038 148 GRLLKL-------------------------------------------------------SREDRRILLAAGAAAGLAA 172 (443)
T ss_pred HHHhCC-------------------------------------------------------CHHHHHHHHHHHHHHHHHH
Confidence 987632 6778999999999999999
Q ss_pred HHhhhcccccccccccccc-cchhhHHHHHHHHHHHHHHHHHhccCCCCcceeeeeeccCccchhhHHHHHHHHHHHHHH
Q psy4183 634 AFGAPIGGVLFSLEEVSYY-FPLKTLWRSFFCALIAAFVLRSINPFGNEHSVLFYVEYNKPWIFFELIPFVGLGVIGGII 712 (898)
Q Consensus 634 ~f~apl~g~lF~lE~l~~~-~s~~~l~~~f~aSiiA~~v~~~l~~~g~~~~~~f~~~~~~~~~~~~l~~~ilLGii~Gll 712 (898)
+|++|++|.+|.+||+.+. ++.+++.|++++|++|..+.+.+ .+ .+. .+.......++.++++.++++|+++|++
T Consensus 173 aF~aPlagvlF~~E~l~~~~~~~~~l~p~~vaa~va~~v~~~~--~~-~~~-~~~~~~~~~~~~~~~~~~~~lGii~G~~ 248 (443)
T COG0038 173 AFNAPLAGALFAIEVLYGRFLEYRALVPVLVAAVVALLVAGLF--GG-PHF-LLPIVTTPHMSLWDLLLYLVLGIIAGLF 248 (443)
T ss_pred HhCCcHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHc--CC-CCc-eeeccccCcCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999997 99999999999999999999986 33 222 2333334456678999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHhhccccccccchhhHHHHHhhhcCCCcCCCchhhHhhhccccc
Q psy4183 713 AYIFIRLNLKWCRYRKMSRLGQYPVTEVLVITAITTLISFPNPFTRMSTSQLIYLLFSQCGGVSYNNGLCDYVINHNATS 792 (898)
Q Consensus 713 g~lF~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~l~~~~p~~~~~~~~~i~~~f~~~~g~~y~~~l~~~l~~~~~~~ 792 (898)
|.+|.|...+.++++++.+ ..+.+++.+++.+++.+.+..|+. .+++|+ +.+...+.+.
T Consensus 249 g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~l~g~~~l~~P~~---------------lg~G~~--~~~~~~~~~~-- 307 (443)
T COG0038 249 GVLLSRLLALSRRFFRRLP--LPPLLRPALGGLLVGALGLLFPEV---------------LGNGYG--LIQLALAGEG-- 307 (443)
T ss_pred HHHHHHHHHHHHHHHhcCc--chHHHHHHHHHHHHHHHHHhchhh---------------hCCCcc--HHHHHHccCc--
Confidence 9999999877666555433 346788889999999888777654 444443 3443333221
Q ss_pred CCCCCCCCCCCChhhHHHH-HHHHHHHHHHHHHHHhccCccccccchHhHHHHHHHHHHHHHHHHhhhcCCcchhccccC
Q psy4183 793 TSNPTTSEAGPGVYTAVWL-LMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGEC 871 (898)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~-Ll~llv~K~~~T~lt~gsG~pGGif~PsL~IGA~~G~l~G~ll~~l~~~~p~~~~~~~~~ 871 (898)
... ++.+++.|+++|.+|+|||+|||+|+|+|++||++|.++|.+++.. +|+.
T Consensus 308 ----------------~~~~l~~l~~~K~l~t~~s~gSG~~GGif~Psl~iGa~lG~~~g~~~~~~---~~~~------- 361 (443)
T COG0038 308 ----------------GLLVLLLLFLLKLLATLLSYGSGAPGGIFAPSLFIGAALGLAFGALLGLL---FPPS------- 361 (443)
T ss_pred ----------------cHHHHHHHHHHHHHHHHHHHhcCCCcceehHHHHHHHHHHHHHHHHHHhh---cCcc-------
Confidence 122 5667889999999999999999999999999999999999998865 3321
Q ss_pred CCCCcCChHHHHHHHHHHHHHHhhcCC
Q psy4183 872 STNDCITPGLYAMVGAAAVLGGVTRMT 898 (898)
Q Consensus 872 ~~~~~~~p~~~AlvGmAa~lagvtrat 898 (898)
..+|..|+++||++++++++|+.
T Consensus 362 ----~~~~~~~al~Gm~a~la~~~~aP 384 (443)
T COG0038 362 ----ILEPGLFALLGMAAFLAATTRAP 384 (443)
T ss_pred ----ccchHHHHHHHHHHHHHHHhccc
Confidence 25788999999999999999974
No 33
>KOG0476|consensus
Probab=100.00 E-value=1.8e-34 Score=328.67 Aligned_cols=395 Identities=28% Similarity=0.394 Sum_probs=275.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc--cc------CCchhHH---HHHHHHHhhheeccCcccccccC-C--
Q psy4183 439 ELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMS--RL------GQYPVTE---VLVITAITTLISFPNPFTRMSTK-A-- 504 (898)
Q Consensus 439 ~l~~~lllGil~Gl~g~lF~~l~~~~~~~~~~~--~~------~~~p~~~---~~l~glv~gll~~~~p~~~g~g~-~-- 504 (898)
++.+.+++|++.++++...-..+....+.+... .+ .++..|- +.++.+-.+..-+..|+..|+|- .
T Consensus 95 DW~flalLG~imAlvS~~mD~ai~~~~~a~~~ly~~~~~~~~yl~yl~Wv~y~v~Li~fSA~f~h~iapQAvGSGIPEmK 174 (931)
T KOG0476|consen 95 DWFFLALLGVIMALVSIGMDMAIESLQHAQVWLYRELGSSHSYLAYLSWVGYPVGLVLFSAGFCHYIAPQAVGSGIPEMK 174 (931)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHheeccccccCCChhHH
Confidence 566778999999999988777766555443210 00 1111111 12222223344466777665541 0
Q ss_pred --CCCchhHHHHHHHHHHHHHHHHHHHhcccccccccchhhhhhhHHHHHHHHHHHHhhhhcCccchhccccCCCCCCCh
Q psy4183 505 --GPGVYTAVWLLMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECSTNDCITP 582 (898)
Q Consensus 505 --~~g~~~~~~~L~~~l~~K~l~t~ltlgsG~pGG~f~Psl~iGA~lG~l~G~l~~~l~~~~p~~~~~~~~~~~g~~i~p 582 (898)
..|....-..-.-.++.|++...+++|+|+|-|.++|-+++++.+...++++..-.
T Consensus 175 tIlrGv~LkeYLt~KtlvAKviGLT~tLGsGlpiGKeGPFVHiasivA~~l~k~~a~~---------------------- 232 (931)
T KOG0476|consen 175 TILRGVILKEYLTLKTLVAKVIGLTLTLGSGLPIGKEGPFVHIASIVAALLSKVTACQ---------------------- 232 (931)
T ss_pred HHHHhhhHHhhhhHHHHHHHHHHhhhhhccCCCcCCCCCchhHHHHHHHHHHHHHHhh----------------------
Confidence 01111111122457899999999999999999999999999999999988765311
Q ss_pred hHHHHHHHHHHHhhhhccchhhhhccccccccchhhHHHHHHHHHHHHHHHHHhhhcccccccccccccccchhhHHHHH
Q psy4183 583 GLYAMVGAAAVLGGVTRMTGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSF 662 (898)
Q Consensus 583 ~~~alvGmaA~lag~~raPltaivl~~Eltg~~~~~~~~li~~~~AagiAa~f~apl~g~lF~lE~l~~~~s~~~l~~~f 662 (898)
++|. +| |+.+..-++++++|+|+|..|++|++|++|++|+.+++|..|++|+.|
T Consensus 233 -----------~~g~-----------~e----nesR~~EmLaaaCAVGVactFsAPiGgVLfSIEvTS~yFAVrnYWRGF 286 (931)
T KOG0476|consen 233 -----------FGGF-----------FE----NESRNMEMLAAACAVGVACTFSAPIGGVLFSIEVTSTYFAVRNYWRGF 286 (931)
T ss_pred -----------cccc-----------cc----CcchHHHHHHHHhhhhheeeecCccceeEEEEEEeeeeeeHHHHHHHH
Confidence 1111 12 444466799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCCcce----ee--eeeccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hh----cc
Q psy4183 663 FCALIAAFVLRSINPFGNEHSV----LF--YVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYR-KM----SR 731 (898)
Q Consensus 663 ~aSiiA~~v~~~l~~~g~~~~~----~f--~~~~~~~~~~~~l~~~ilLGii~Gllg~lF~~l~~~~~~~~-~~----~~ 731 (898)
+|+.++++++|.+..|...... +| .+..+.++++.|++.|+++|++||++|++|..+.++..-+. |+ +.
T Consensus 287 FAAtcsA~vFR~lavf~v~~~~tItA~yqT~F~~d~~F~~~ELp~FallGl~cGllGa~fVylhR~ivlf~Rkn~~~~~~ 366 (931)
T KOG0476|consen 287 FAATCSAFVFRLLAVFFVEAEVTITALYQTSFRPDFPFDVQELPFFALLGLLCGLLGALFVYLHRRIVLFLRKNRYAKKL 366 (931)
T ss_pred HHHHhHHHHHHHHHHHcccchhhhHHHHhccCCCCCCCCHHHhHHHHHHHHHHhcccceeeeeeeeeeeeehhhHHHHHH
Confidence 9999999999988655542221 12 23445688999999999999999999999987754332211 11 11
Q ss_pred cCCchhHHHHHHHHHHHHhhccccccccchhh-----HHHHHhhhcCCCcC--CCchhhHhhhcccccCCCCCCCCCC-C
Q psy4183 732 LGQYPVTEVLVITAITTLISFPNPFTRMSTSQ-----LIYLLFSQCGGVSY--NNGLCDYVINHNATSTSNPTTSEAG-P 803 (898)
Q Consensus 732 ~~~~~~~~~~~~~~i~g~l~~~~p~~~~~~~~-----~i~~~f~~~~g~~y--~~~l~~~l~~~~~~~~~~~~~~~~~-~ 803 (898)
+.+++++-+.++.++++.+.||....+.+.++ .+..+|.+|.-..- ++..+.. +. ...+.. .
T Consensus 367 f~k~~llyp~~~a~v~ssltfP~GlG~f~aG~l~f~etl~~fF~Nctw~~~~~~~~~~~~---~~-------~~hW~~p~ 436 (931)
T KOG0476|consen 367 FQKSRLLYPAFIALVFSSLTFPPGLGQFLAGRLSFRETLVDFFDNCTWWVQTNDSELCPA---HI-------LTHWYHPE 436 (931)
T ss_pred HhhCccHHHHHHHHHHhheecCCcccccccccccHHhHHHHHhhcCeeeecCCCcCCCCh---hh-------hhhhcCCC
Confidence 22345666778888999999988777665543 46677776652211 1011100 00 001111 2
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHhccCccccccchHhHHHHHHHHHHHHHHHHhhhcCCcchhccccCCCCCcCChHHHH
Q psy4183 804 GVYTAVWLLMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECSTNDCITPGLYA 883 (898)
Q Consensus 804 ~~~~~~~~Ll~llv~K~~~T~lt~gsG~pGGif~PsL~IGA~~G~l~G~ll~~l~~~~p~~~~~~~~~~~~~~~~p~~~A 883 (898)
+.+.....|.+++++||++++++....+|.|+|+|.++|||++||++|+.+..+ +|.+-+..|.. ..+.||.||
T Consensus 437 g~~~~f~tL~lf~l~~F~~siia~TipvPsG~FmPvFViGAafGRlvGE~m~~l---fP~Gi~~~gi~---~~I~PG~YA 510 (931)
T KOG0476|consen 437 GDVSIFGTLVLFFLMYFWMSIIATTIPVPSGVFMPVFVIGAAFGRLVGEIMAVL---FPEGIRGGGIT---PPIHPGGYA 510 (931)
T ss_pred CceeeHHHHHHHHHHHHHHHHHHhccccCccceeeeeeechhhhhhhhhhheee---cccccccCCcc---Cccccchhh
Confidence 344556678889999999999999999999999999999999999999987755 77764433322 248899999
Q ss_pred HHHHHHHHHHhhcC
Q psy4183 884 MVGAAAVLGGVTRM 897 (898)
Q Consensus 884 lvGmAa~lagvtra 897 (898)
++|||||-++|||+
T Consensus 511 VVGAAAfsGaVTHT 524 (931)
T KOG0476|consen 511 VVGAAAFSGAVTHT 524 (931)
T ss_pred hhhhhhhccceeee
Confidence 99999999999985
No 34
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=4.2e-32 Score=308.01 Aligned_cols=330 Identities=19% Similarity=0.229 Sum_probs=242.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCchhHHHHHHHHHhhheeccCccccccc--------CCCCCchhHHHH
Q psy4183 443 FVGLGVIGGIIAYIFIRLNLKWCRYRKMSRLGQYPVTEVLVITAITTLISFPNPFTRMST--------KAGPGVYTAVWL 514 (898)
Q Consensus 443 ~lllGil~Gl~g~lF~~l~~~~~~~~~~~~~~~~p~~~~~l~glv~gll~~~~p~~~g~g--------~~~~g~~~~~~~ 514 (898)
.+++|+++|+++.+|++..++..+++.++ .+......+.+++++.+....+...+++ ...++. .
T Consensus 2 a~~iGii~G~~~~~f~~~i~~~~~~~~~~---~~~~~~~p~~g~~i~~l~~~~~~~~~~g~~~v~~~~~~~~~~---~-- 73 (378)
T cd03682 2 ALLIGLLVGSASALFLWSLDWATEFREAH---PWLLPFLPLAGLLIGYLYQKFGKNSEKGNNLIIEEIHGPEEG---I-- 73 (378)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHhCcccCCChHHHHHHHHccCCC---C--
Confidence 47899999999999999999998876542 1212233445555544433333322222 000111 0
Q ss_pred HHHHHHHHHHHHHHHhcccccccccchhhhhhhHHHHHHHHHHHHhhhhcCccchhccccCCCCCCChhHHHHHHHHHHH
Q psy4183 515 LMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECSTNDCITPGLYAMVGAAAVL 594 (898)
Q Consensus 515 L~~~l~~K~l~t~ltlgsG~pGG~f~Psl~iGA~lG~l~G~l~~~l~~~~p~~~~~~~~~~~g~~i~p~~~alvGmaA~l 594 (898)
-......|++.+.+++++|.|+|+|+|++++|+.+|..+++.++.
T Consensus 74 ~~~~~~~k~~~~~l~l~~G~s~G~Egp~v~~ga~~~~~~~~~~~~----------------------------------- 118 (378)
T cd03682 74 PLRMAPLVLFGTVLTHLFGGSAGREGTAVQMGGSLADAFGRVFKL----------------------------------- 118 (378)
T ss_pred chHHHHHHHHHHHHHHHcCCccCCcchHHHHHHHHHHHHHHHhCC-----------------------------------
Confidence 123556799999999999999999999999999999999875421
Q ss_pred hhhhccchhhhhccccccccchhhHHHHHHHHHHHHHHHHHhhhcccccccccccc-cccchhhHHHHHHHHHHHHHHHH
Q psy4183 595 GGVTRMTGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVS-YYFPLKTLWRSFFCALIAAFVLR 673 (898)
Q Consensus 595 ag~~raPltaivl~~Eltg~~~~~~~~li~~~~AagiAa~f~apl~g~lF~lE~l~-~~~s~~~l~~~f~aSiiA~~v~~ 673 (898)
+++|+|.++.++++++++++|++|+++.+|++|++. ++++.+.+++++++|++++.+.+
T Consensus 119 --------------------~~~~~r~l~~~g~aAglaa~f~aPl~g~~f~~E~~~~~~~~~~~~~~~~i~~~~a~~v~~ 178 (378)
T cd03682 119 --------------------PEEDRRILLIAGIAAGFAAVFGTPLAGAIFALEVLVLGRLRYSALIPCLVAAIVADWVSH 178 (378)
T ss_pred --------------------CHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 445678899999999999999999999999999996 67889999999999999999998
Q ss_pred HhccCCCCcceeeeeeccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHhhcc
Q psy4183 674 SINPFGNEHSVLFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSRLGQYPVTEVLVITAITTLISFP 753 (898)
Q Consensus 674 ~l~~~g~~~~~~f~~~~~~~~~~~~l~~~ilLGii~Gllg~lF~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~l~~~ 753 (898)
.+ +..+. .+......+++..++++++++|+++|++|.+|+|+.++.++++++. ...+..++++++++++++.+.
T Consensus 179 ~~---~~~~~-~~~~~~~~~~~~~~l~~~i~~Gi~~gl~g~~f~~~~~~~~~~~~~~--~~~~~~~~~iggl~~g~~~~~ 252 (378)
T cd03682 179 AL---GLEHT-HYHIVFIPTLDPLLFVKVILAGIIFGLAGRLFAELLHFLKKLLKKR--IKNPYLRPFVGGLLIILLVYL 252 (378)
T ss_pred Hh---CCCCC-ccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCcHHHHHHHHHHHHHHHHH
Confidence 74 22222 2333334556778899999999999999999999998888865532 234557788888888877654
Q ss_pred ccccccchhhHHHHHhhhcCCCcCCCchhhH-hhhcccccCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHhccCcc
Q psy4183 754 NPFTRMSTSQLIYLLFSQCGGVSYNNGLCDY-VINHNATSTSNPTTSEAGPGVYTAVWLLMITLVLKLVLTVFTFGIKVP 832 (898)
Q Consensus 754 ~p~~~~~~~~~i~~~f~~~~g~~y~~~l~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~llv~K~~~T~lt~gsG~p 832 (898)
.+.. +..|.+|+ ..+. ..++ +. . ...++.|+++|++|+|+|.|
T Consensus 253 ~~~~-------------~~~G~g~~--~i~~~~~~~----------------~~-~----~~~~l~K~~~t~~s~g~G~~ 296 (378)
T cd03682 253 LGSR-------------RYLGLGTP--LIEDSFFGG----------------TV-Y----PYDWLLKLIFTVITLGAGFK 296 (378)
T ss_pred hcCC-------------ccccCCHH--HHHHHHhcC----------------Cc-h----HHHHHHHHHHHHHHHhcCCC
Confidence 3221 11233231 1221 1111 00 1 11346899999999999999
Q ss_pred ccccchHhHHHHHHHHHHHHHHHHhhhcCCcchhccccCCCCCcCChHHHHHHHHHHHHHHhhcCC
Q psy4183 833 CGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECSTNDCITPGLYAMVGAAAVLGGVTRMT 898 (898)
Q Consensus 833 GGif~PsL~IGA~~G~l~G~ll~~l~~~~p~~~~~~~~~~~~~~~~p~~~AlvGmAa~lagvtrat 898 (898)
||+|+|++++||++|++++++++ .++..++++||+|++++++|++
T Consensus 297 GG~f~P~l~iGa~~G~~~~~~~~---------------------~~~~~~~~~Gmaa~laa~~raP 341 (378)
T cd03682 297 GGEVTPLFFIGATLGNALAPILG---------------------LPVSLLAALGFVAVFAGATNTP 341 (378)
T ss_pred CceechHHHHHHHHHHHHHHHHC---------------------CCHHHHHHHHHHHHHHHHhcch
Confidence 99999999999999999998753 3678999999999999999984
No 35
>cd01034 EriC_like ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=5.5e-32 Score=308.35 Aligned_cols=334 Identities=22% Similarity=0.244 Sum_probs=238.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccCCchh----HHHHHHHHHhhheeccCccccccc--------CCCCCchhHHHHHHHH
Q psy4183 451 GIIAYIFIRLNLKWCRYRKMSRLGQYPV----TEVLVITAITTLISFPNPFTRMST--------KAGPGVYTAVWLLMIT 518 (898)
Q Consensus 451 Gl~g~lF~~l~~~~~~~~~~~~~~~~p~----~~~~l~glv~gll~~~~p~~~g~g--------~~~~g~~~~~~~L~~~ 518 (898)
|+++..|..++++.++.+.... ..+++ +.++.++++..++..+.|+..+++ ....+.......-...
T Consensus 1 g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~gsGi~~v~~~~~~~~~~~~~~~~~~r~ 79 (390)
T cd01034 1 GLVALLFAKLADLALALFQRLT-ATHPWLPLLLTPAGFALIAWLTRRFFPGAAGSGIPQVIAALELPSAAARRRLLSLRT 79 (390)
T ss_pred ChhhHHHHHHHHHHHHHHHHHH-HhchHHHHHHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHcccccccccccccHHH
Confidence 4567788888888776654321 11222 122333334444444556655544 0001100000122457
Q ss_pred HHHHHHHHHHHhcccccccccchhhhhhhHHHHHHHHHHHHhhhhcCccchhccccCCCCCCChhHHHHHHHHHHHhhhh
Q psy4183 519 LVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECSTNDCITPGLYAMVGAAAVLGGVT 598 (898)
Q Consensus 519 l~~K~l~t~ltlgsG~pGG~f~Psl~iGA~lG~l~G~l~~~l~~~~p~~~~~~~~~~~g~~i~p~~~alvGmaA~lag~~ 598 (898)
.+.|.+.+.+++++|.|.|+|+|++++|+++|..+++.++.
T Consensus 80 ~~~k~i~~~l~i~~G~s~GrEGP~v~iga~i~~~~~~~~~~--------------------------------------- 120 (390)
T cd01034 80 AVGKILLTLLGLLGGASVGREGPSVQIGAAVMLAIGRRLPK--------------------------------------- 120 (390)
T ss_pred HHHHHHHHHHHHHcCCCcCCcccHHHHHHHHHHHHHHHccc---------------------------------------
Confidence 78999999999999999999999999999999999876431
Q ss_pred ccchhhhhccccccccchhhHHHHHHHHHHHHHHHHHhhhcccccccccccccccchhhHHHHHHHHHHHHHHHHHhccC
Q psy4183 599 RMTGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALIAAFVLRSINPF 678 (898)
Q Consensus 599 raPltaivl~~Eltg~~~~~~~~li~~~~AagiAa~f~apl~g~lF~lE~l~~~~s~~~l~~~f~aSiiA~~v~~~l~~~ 678 (898)
.+++|+|.++.|+++|++|++|++|++|.+|++||+.++++.+..++.++++++|+++.+.+ +
T Consensus 121 ---------------~~~~~~r~li~~GaaAGlaa~F~aPlaG~lF~~E~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~ 183 (390)
T cd01034 121 ---------------WGGLSERGLILAGGAAGLAAAFNTPLAGIVFAIEELSRDFELRFSGLVLLAVIAAGLVSLAV--L 183 (390)
T ss_pred ---------------CchHHHHHHHHHHHHHhHHHHhCCcchhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH--c
Confidence 02466889999999999999999999999999999999999999999999999999999886 6
Q ss_pred CCCcceeeeeeccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---ccCCchhHHHHHHHHHHHHhhcccc
Q psy4183 679 GNEHSVLFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMS---RLGQYPVTEVLVITAITTLISFPNP 755 (898)
Q Consensus 679 g~~~~~~f~~~~~~~~~~~~l~~~ilLGii~Gllg~lF~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~i~g~l~~~~p 755 (898)
|+++. |..+....++..++++++++|+++|++|.+|+|.+.+.+|.+++. +...++..+..+.+++++.+.+..|
T Consensus 184 g~~~~--f~~~~~~~~~~~~~~~~illGii~G~~g~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~ 261 (390)
T cd01034 184 GNYPY--FGVAAVALPLGEAWLLVLVCGVVGGLAGGLFARLLVALSSGLPGWVRRFRRRRPVLFAALCGLALALIGLVSG 261 (390)
T ss_pred CCCCc--cCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHhCC
Confidence 66554 333322235567888999999999999999999988877754432 1223455666677777776655443
Q ss_pred ccccchhhHHHHHhhhcCCCcCCCchhhHhhhcccccCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHhccCccccc
Q psy4183 756 FTRMSTSQLIYLLFSQCGGVSYNNGLCDYVINHNATSTSNPTTSEAGPGVYTAVWLLMITLVLKLVLTVFTFGIKVPCGL 835 (898)
Q Consensus 756 ~~~~~~~~~i~~~f~~~~g~~y~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~llv~K~~~T~lt~gsG~pGGi 835 (898)
. +..|++|+ ..+..++++. . . ...+++.|+++|++|+++|.|||.
T Consensus 262 ~--------------~~~G~G~~--~i~~~~~~~~--------------~--~---~~~~~l~K~i~t~lt~gsG~~gG~ 306 (390)
T cd01034 262 G--------------LTFGTGYL--QARAALEGGG--------------G--L---PLWFGLLKFLATLLSYWSGIPGGL 306 (390)
T ss_pred C--------------ccccCcHH--HHHHHHhCCC--------------c--c---cHHHHHHHHHHHHHHHHcCCCcce
Confidence 1 12333332 2333332210 0 0 123466899999999999999999
Q ss_pred cchHhHHHHHHHHHHHHHHHHhhhcCCcchhccccCCCCCcCChHHHHHHHHHHHHHHhhcCC
Q psy4183 836 FIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECSTNDCITPGLYAMVGAAAVLGGVTRMT 898 (898)
Q Consensus 836 f~PsL~IGA~~G~l~G~ll~~l~~~~p~~~~~~~~~~~~~~~~p~~~AlvGmAa~lagvtrat 898 (898)
|.|++++||++|++++.+++. .+|..|+++||+|++++++|++
T Consensus 307 f~P~l~iGa~~G~~~~~~~~~--------------------~~~~~~a~~G~aA~laa~~~aP 349 (390)
T cd01034 307 FAPSLAVGAGLGSLLAALLGS--------------------VSQGALVLLGMAAFLAGVTQAP 349 (390)
T ss_pred echHHHHHHHHHHHHHHHhcC--------------------CCchHHHHHHHHHHHHHHHccc
Confidence 999999999999999986431 4799999999999999999984
No 36
>PRK03655 putative ion channel protein; Provisional
Probab=99.98 E-value=4.8e-31 Score=301.00 Aligned_cols=340 Identities=11% Similarity=0.084 Sum_probs=242.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc---------cCCchhHHHHHHHHHhhheeccCcccccccC----C
Q psy4183 438 FELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSR---------LGQYPVTEVLVITAITTLISFPNPFTRMSTK----A 504 (898)
Q Consensus 438 ~~l~~~lllGil~Gl~g~lF~~l~~~~~~~~~~~~---------~~~~p~~~~~l~glv~gll~~~~p~~~g~g~----~ 504 (898)
+.+...+++|+++|+.+.+|.+++++.++.+-... ...|.+..+.++|++++.+....|...++.. .
T Consensus 11 ~l~~~ailvG~~aGl~a~lf~~li~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gGllvgll~~~~~~~~G~~~~~~~~ 90 (414)
T PRK03655 11 LLSLPALAIGIASSLILIVVMKIASVLQNLLWQRLPGTLGIAQDSPLWIIGMLTLTGIAVGLVIRFSPGHAGPDPATEPL 90 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccchHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHH
Confidence 45677899999999999999999998887643210 0112333355677888777655443222210 0
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHhcccccccccchhhhhhhHHHHHHHHHHHHhhhhcCccchhccccCCCCCCChhH
Q psy4183 505 GPGVYTAVWLLMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECSTNDCITPGL 584 (898)
Q Consensus 505 ~~g~~~~~~~L~~~l~~K~l~t~ltlgsG~pGG~f~Psl~iGA~lG~l~G~l~~~l~~~~p~~~~~~~~~~~g~~i~p~~ 584 (898)
..+. .-......|++.+.+++++|.+.|+|+|++++||.+|+.+++.+.
T Consensus 91 ~~~~-----~~~~~~~~~~~~~~l~l~~G~S~GrEGP~VqiGa~igs~~~r~~~-------------------------- 139 (414)
T PRK03655 91 IGAP-----VPPSALPGLLLALILGLAGGVSLGPEHPIMTVNIALAVAIGARLL-------------------------- 139 (414)
T ss_pred hcCC-----CCccHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHhc--------------------------
Confidence 0110 012456789999999999999999999999999999999996541
Q ss_pred HHHHHHHHHHhhhhccchhhhhccccccccchhhHHHHHHHHHHHHHHHHHhhhcccccccccccccccchh---hHHHH
Q psy4183 585 YAMVGAAAVLGGVTRMTGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLK---TLWRS 661 (898)
Q Consensus 585 ~alvGmaA~lag~~raPltaivl~~Eltg~~~~~~~~li~~~~AagiAa~f~apl~g~lF~lE~l~~~~s~~---~l~~~ 661 (898)
++++.+.++.+++|+++|++||+|++|.+|++||+.++++.+ ...+.
T Consensus 140 ------------------------------~~~~~~~l~~~gaAaGiaAaFnaPLaG~lFa~E~l~~~~~~~~~~~~~~~ 189 (414)
T PRK03655 140 ------------------------------PRVNRMDWTILASAGTIGALFGTPVAAALIFSQTLNGSNEVPLWDRLFAP 189 (414)
T ss_pred ------------------------------cCCChhHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 111245567799999999999999999999999999977752 34555
Q ss_pred HHHHHHHHHHHHHhccCCCCcceeeeeeccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhHHHH
Q psy4183 662 FFCALIAAFVLRSINPFGNEHSVLFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSRLGQYPVTEVL 741 (898)
Q Consensus 662 f~aSiiA~~v~~~l~~~g~~~~~~f~~~~~~~~~~~~l~~~ilLGii~Gllg~lF~~l~~~~~~~~~~~~~~~~~~~~~~ 741 (898)
+++++++..+++.. ++ +.+.+..+.....+..++++++++|+++|++|.+|++...+.+|.+++.+ +|..+..
T Consensus 190 v~aa~~a~~v~~~~--~~--~~~~~~~~~~~~~~~~~~~~~l~lgi~~gl~G~lf~~~~~~~~~~~~~~~---~p~~~~~ 262 (414)
T PRK03655 190 LMAAAAGALTTGLF--FH--PHFSLPIAHYGQMEMTDILSGAIVAAIAIAAGMVAVWCLPRLHALMHRLK---NPVLVLG 262 (414)
T ss_pred HHHHHHHHHHHHHh--CC--CCcceecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cchHHHH
Confidence 67777788888765 32 22223333333455678888999999999999999999887777544322 2445677
Q ss_pred HHHHHHHHhhccccccccchhhHHHHHhhhcCCCcCCCchhhHhhhcccccCCCCCCCCCCCChhhHHHHHHHHHHHHHH
Q psy4183 742 VITAITTLISFPNPFTRMSTSQLIYLLFSQCGGVSYNNGLCDYVINHNATSTSNPTTSEAGPGVYTAVWLLMITLVLKLV 821 (898)
Q Consensus 742 ~~~~i~g~l~~~~p~~~~~~~~~i~~~f~~~~g~~y~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~llv~K~~ 821 (898)
+++++++.+.+..+ ++..+++|+ ..+...+++ ++ ..+.++.+.+.|++
T Consensus 263 lgGl~vg~l~l~~~--------------~~~~g~Gy~--~i~~~~~~~---------------~~-~~~~ll~l~l~K~l 310 (414)
T PRK03655 263 IGGFILGILGVIGG--------------PLTLFKGLD--EMQQMAANQ---------------AF-SASDYFLLAVVKLA 310 (414)
T ss_pred HHHHHHHHHHHHhC--------------CccccCCHH--HHHHHHhcC---------------Cc-cHHHHHHHHHHHHH
Confidence 88888887765321 223455553 222222211 01 34456667889999
Q ss_pred HHHHHhccCccccccchHhHHHHHHHHHHHHHHHHhhhcCCcchhccccCCCCCcCChHHHHHHHHHHHHHHhhcC
Q psy4183 822 LTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECSTNDCITPGLYAMVGAAAVLGGVTRM 897 (898)
Q Consensus 822 ~T~lt~gsG~pGGif~PsL~IGA~~G~l~G~ll~~l~~~~p~~~~~~~~~~~~~~~~p~~~AlvGmAa~lagvtra 897 (898)
+|++|+++|.|||+|+|+|++||.+|..++.++ |+ .++....++||+++++++||+
T Consensus 311 at~ls~~sG~~GGiF~PsL~iGA~~G~~~~~l~-------p~-------------~~~~~~v~~~m~a~la~vtr~ 366 (414)
T PRK03655 311 ALVVAAASGFRGGRIFPAVFVGVALGLMLHAHV-------PA-------------VPAAITVSCAILGIVLVVTRD 366 (414)
T ss_pred HHHHHHccCCCCceehHHHHHHHHHHHHHHHhc-------cC-------------CChHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999988763 32 568888999999999999994
No 37
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=34.48 E-value=5.3e+02 Score=32.82 Aligned_cols=29 Identities=14% Similarity=0.057 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4183 697 FELIPFVGLGVIGGIIAYIFIRLNLKWCR 725 (898)
Q Consensus 697 ~~l~~~ilLGii~Gllg~lF~~l~~~~~~ 725 (898)
+++...++=+++++.+.++|++....+.+
T Consensus 113 y~~~~~~~e~~l~~~l~~if~~~~~~~~~ 141 (764)
T TIGR02865 113 LDFILSIVEASLSFVLYYIFNYSIPCLKN 141 (764)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45666666688999999999998755443
No 38
>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []. Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].
Probab=30.74 E-value=43 Score=23.36 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhhhhhhhccCccc
Q psy4183 359 KKREILSAAAAAGVSVAFGAPIG 381 (898)
Q Consensus 359 ~~r~lvaaGaAAGlaAaF~APLa 381 (898)
.||+++..+++++.++++..+.+
T Consensus 3 sRR~fLk~~~a~~a~~~~~~~~~ 25 (26)
T PF10518_consen 3 SRRQFLKGGAAAAAAAALGGCAG 25 (26)
T ss_pred cHHHHHHHHHHHHHHHHhccccC
Confidence 58999999999999998887654
No 39
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=27.91 E-value=2.7e+02 Score=35.42 Aligned_cols=32 Identities=16% Similarity=0.061 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4183 438 FELIPFVGLGVIGGIIAYIFIRLNLKWCRYRK 469 (898)
Q Consensus 438 ~~l~~~lllGil~Gl~g~lF~~l~~~~~~~~~ 469 (898)
.++...++=+++++.+...|.+.+..+...+.
T Consensus 113 y~~~~~~~e~~l~~~l~~if~~~~~~~~~~~~ 144 (764)
T TIGR02865 113 LDFILSIVEASLSFVLYYIFNYSIPCLKNGRT 144 (764)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 46666777788999999999998877665443
No 40
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=25.64 E-value=99 Score=29.95 Aligned_cols=16 Identities=31% Similarity=0.528 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHH
Q psy4183 701 PFVGLGVIGGIIAYIF 716 (898)
Q Consensus 701 ~~ilLGii~Gllg~lF 716 (898)
..+++|+++|++|.+.
T Consensus 67 ~~Ii~gv~aGvIg~Il 82 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIIL 82 (122)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHHH
Confidence 4578899999998765
No 41
>KOG4267|consensus
Probab=20.33 E-value=2.3e+02 Score=26.97 Aligned_cols=67 Identities=34% Similarity=0.471 Sum_probs=40.3
Q ss_pred chhhhhhhHHHHHHHHHHHHhhhhcCccchhccccCCCCCCChhHHHHHHHHHHHhhhhccchhhhhccccccccchhhH
Q psy4183 540 IPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECSTNDCITPGLYAMVGAAAVLGGVTRMTGNILSYLFPKYGRNEAKK 619 (898)
Q Consensus 540 ~Psl~iGA~lG~l~G~l~~~l~~~~p~~~~~~~~~~~g~~i~p~~~alvGmaA~lag~~raPltaivl~~Eltg~~~~~~ 619 (898)
.||+.-|...|.++|..-.++... .-.-..+++.+.++++++++..- +-. .
T Consensus 28 i~SL~aGl~~G~l~g~~s~~l~~~---------------~~~~~~~~l~~~s~~L~gvmg~R-------~~~-------s 78 (110)
T KOG4267|consen 28 IPSLAAGLLFGALAGYGSYLLSRD---------------KKGGSLVALGGTSAALLGVMGQR-------FYR-------S 78 (110)
T ss_pred cchHHHHHHHHHHHHHHHHHhhcC---------------CCcCchhHHHHHHHHHHHHHhhh-------hhc-------c
Confidence 589999999998888765443211 11124455666788888777421 111 2
Q ss_pred HHHHHHHHHHHHHHHH
Q psy4183 620 REILSAAAAAGVSVAF 635 (898)
Q Consensus 620 ~~li~~~~AagiAa~f 635 (898)
+.+.|++..++++...
T Consensus 79 ~K~mPaglva~~s~~m 94 (110)
T KOG4267|consen 79 RKIMPAGLVAGISLLM 94 (110)
T ss_pred CCccchHHHHHHHHHH
Confidence 4466777777666543
No 42
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=20.22 E-value=34 Score=34.48 Aligned_cols=13 Identities=46% Similarity=0.979 Sum_probs=0.0
Q ss_pred ccchhhhhhHhHh
Q psy4183 60 VGLGVIGGIIAYI 72 (898)
Q Consensus 60 ~~~~~~~~~~~~~ 72 (898)
+++|+|||||-..
T Consensus 140 laIG~igGIIivv 152 (162)
T PF05808_consen 140 LAIGFIGGIIIVV 152 (162)
T ss_dssp -------------
T ss_pred HHHHHHhheeeEE
Confidence 5678888887543
Done!