Query psy4183
Match_columns 898
No_of_seqs 372 out of 2789
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 18:58:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4183.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4183hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nd0_A SLL0855 protein; CLC fa 100.0 8.8E-60 3E-64 544.1 25.0 356 258-646 76-439 (466)
2 1ots_A Voltage-gated CLC-type 100.0 4.5E-57 1.5E-61 522.9 25.6 358 259-647 81-448 (465)
3 4ene_A CLC-EC1, H(+)/CL(-) exc 100.0 3.5E-57 1.2E-61 520.9 24.2 356 258-646 65-432 (446)
4 3org_A CMCLC; transporter, tra 100.0 1.8E-55 6E-60 528.3 21.1 363 255-646 50-432 (632)
5 3nd0_A SLL0855 protein; CLC fa 100.0 7.6E-39 2.6E-43 369.6 32.8 353 436-898 28-397 (466)
6 1ots_A Voltage-gated CLC-type 100.0 1E-38 3.5E-43 369.4 33.2 354 437-898 33-405 (465)
7 4ene_A CLC-EC1, H(+)/CL(-) exc 100.0 2.5E-38 8.5E-43 364.2 32.9 350 437-898 18-390 (446)
8 3org_A CMCLC; transporter, tra 100.0 6.6E-38 2.2E-42 376.0 26.4 368 433-897 4-391 (632)
9 2knc_A Integrin alpha-IIB; tra 13.8 3E+02 0.01 21.7 5.1 31 701-731 13-43 (54)
10 2k9y_A Ephrin type-A receptor 10.8 72 0.0025 23.3 0.7 29 57-85 12-41 (41)
No 1
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A
Probab=100.00 E-value=8.8e-60 Score=544.15 Aligned_cols=356 Identities=21% Similarity=0.266 Sum_probs=304.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcCCccccccccccccchhhhhhHHHHHhcCccccCCCCchhh
Q psy4183 258 VFFIAWALLFASLAAGLVRMFAPYACGSGIPEQNYSDVEGSSLVVYVGKSGHSSSKSCGRIMLAVSAGLSLRKGRTPWFT 337 (898)
Q Consensus 258 ~~~il~~~~~~~l~~~L~~~~~p~a~GsGIp~v~~~~l~G~~~~~~l~~~~~~~~K~l~~~ilav~sG~SlGrE~GP~v~ 337 (898)
+.+++.+..++.+++++++|+.|+++||||||+++ .++|.+ +..++|+ ++.|++++ ++++++|+|+||| ||++|
T Consensus 76 ~l~~~~~~~~~~l~~~l~~~~~p~a~GsGIp~v~~-~l~g~~--~~~~~~~-~~~k~~~~-~ltig~G~S~GrE-GP~vq 149 (466)
T 3nd0_A 76 LVTALISGGMVALSFWLMKRFAPDTSGSGIPQIEG-HLEGKL--PLVWQRV-LPIKLVGG-FLSLGAGMLAGFE-GPTIQ 149 (466)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCGGGSBCSHHHHHH-HTTSSS--CCCHHHH-HHHHHHHH-HHHHHTTCSCCTH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCcCCCCHHHHHH-HHcCCC--CCchHHH-HHHHHHHH-HHHHhcCCCCCCc-chHHH
Confidence 34455566777788899999999999999999999 777643 3334455 99999999 9999999999999 99999
Q ss_pred hhhhhhhhhccccccCCCCHHHHHHHHHHHHhhhhhhhccCccccceeEEeeecccc--chhhHHHHHHHHHHHHHHHHH
Q psy4183 338 LRPCIGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSYYF--PLKTLWRSFFCALIAAFVLRS 415 (898)
Q Consensus 338 iGa~ig~~l~~~f~~~~~~~~~~r~lvaaGaAAGlaAaF~APLaGvlFalE~l~~~~--~~~~l~~~~~as~va~~v~~~ 415 (898)
+|+++|++++|++| ++++|||++++||+|||+||+||||++|++|++||+.+++ +.+.++++++||++|+++++.
T Consensus 150 iGa~ig~~l~~~~~---~~~~~~r~ll~aGaAAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~~~~as~~a~~v~~~ 226 (466)
T 3nd0_A 150 MGGSIGQMTGGWFK---ATQENQRILIAVGAGAGLATAFNAPLAGVALIGEEMHPRFRSQTLAYHSLLFGCVMATIILRM 226 (466)
T ss_dssp HHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHSSSCCCCSSCCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC---CChhHHHHHHHHHHHHHHHHHhCCchHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999987 7899999999999999999999999999999999999888 446788999999999999998
Q ss_pred hccCCCcceeeeeecccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCchhHHHHHHHHHhhheeccC
Q psy4183 416 INPFGNEHSVLFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSRLGQYPVTEVLVITAITTLISFPN 495 (898)
Q Consensus 416 l~~~g~~~~~~f~~~~~~~~~~~~l~~~lllGil~Gl~g~lF~~l~~~~~~~~~~~~~~~~p~~~~~l~glv~gll~~~~ 495 (898)
+ +|+++. |..+....++..++++++++|+++|++|.+|++.+.+.++++++.+ +.++++++.+++++++++.++.
T Consensus 227 ~--~g~~~~--f~~~~~~~~~~~~l~~~illGi~~Gl~g~lf~~~~~~~~~~~~~~~-~~~~~~~~~l~g~~~g~l~~~~ 301 (466)
T 3nd0_A 227 I--RGQSAI--ISLTEFKRVPLDSLWMFIILGILFGVMGYTFNRGLFKVLDWFDRLP-PLATKWKGFLLGSIIGILSLFP 301 (466)
T ss_dssp H--TCSSCS--SCCTTCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHHHHTTSS
T ss_pred H--cCCCCc--eecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cccHHHHHHHHHHHHHHHHHHH
Confidence 8 677664 4444334456789999999999999999999999999888776531 1235677888999999999999
Q ss_pred cccccccC-----CCCCchhHHHHHHHHHHHHHHHHHHHhcccccccccchhhhhhhHHHHHHHHHHHHhhhhcCccchh
Q psy4183 496 PFTRMSTK-----AGPGVYTAVWLLMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIF 570 (898)
Q Consensus 496 p~~~g~g~-----~~~g~~~~~~~L~~~l~~K~l~t~ltlgsG~pGG~f~Psl~iGA~lG~l~G~l~~~l~~~~p~~~~~ 570 (898)
|+..+++. ..++. .....++.+++.|+++|++|+|+|.|||+|+|++++||++|+++|.+++.+. |+
T Consensus 302 p~~~G~G~~~i~~~~~~~-~~~~~L~~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~~---p~---- 373 (466)
T 3nd0_A 302 LPLTDGGDNAVLWAFNSQ-SHFSTLILVFCGRFLLTLICYGSGAIGGIFAPMLGIASIVSVAMARHFHLLF---PS---- 373 (466)
T ss_dssp SSCSSSSHHHHHHHTTSC-CCHHHHHHHHHHHHHHHHHHHHTTCBCCSHHHHHHHHHHHHHHHHHHHHHHC---TT----
T ss_pred HHHcCCcHHHHHHHHcCC-ccHHHHHHHHHHHHHHHHHHHhCCCCCceehHHHHHHHHHHHHHHHHHHHhC---Cc----
Confidence 99887761 11222 2345677889999999999999999999999999999999999999987653 32
Q ss_pred ccccCCCCCCChhHHHHHHHHHHHhhhhccchhhhhccccccccchhhHHHHHHHHHHHHHHHHHhhhcc-cccccc
Q psy4183 571 AGECSTNDCITPGLYAMVGAAAVLGGVTRMTGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIG-GVLFSL 646 (898)
Q Consensus 571 ~~~~~~g~~i~p~~~alvGmaA~lag~~raPltaivl~~Eltg~~~~~~~~li~~~~AagiAa~f~apl~-g~lF~l 646 (898)
...+|+.|+++||+|++++++|+|+|++++++|+||+ .+.++|.++++.+|+.+++-++ ..+|+.
T Consensus 374 -------~~~~~~~~a~vGmaa~~a~v~~aPlt~ivlv~Eltg~----~~~~lpl~ia~~iA~~v~~~~~~~~iY~~ 439 (466)
T 3nd0_A 374 -------QIPEPAVMAIAGMGALVAATVRAPLTAILLTIEMTDN----YFVILPLLVTCLVASVVAEALGGKPIYTV 439 (466)
T ss_dssp -------TCSSTHHHHHHTTSHHHHHHHSCHHHHHHHHHHTTCC----CTTHHHHHHHHHHHHHHHTTSCCCCHHHH
T ss_pred -------cccCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHCC----hHHHHHHHHHHHHHHHHHHHhCCCChHHH
Confidence 3578999999999999999999999999999999997 7899999999999999999885 567764
No 2
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Probab=100.00 E-value=4.5e-57 Score=522.85 Aligned_cols=358 Identities=23% Similarity=0.286 Sum_probs=305.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcCCccccccccccccchhhhhhHHHHHhcCccccCCCCchhhh
Q psy4183 259 FFIAWALLFASLAAGLVRMFAPYACGSGIPEQNYSDVEGSSLVVYVGKSGHSSSKSCGRIMLAVSAGLSLRKGRTPWFTL 338 (898)
Q Consensus 259 ~~il~~~~~~~l~~~L~~~~~p~a~GsGIp~v~~~~l~G~~~~~~l~~~~~~~~K~l~~~ilav~sG~SlGrE~GP~v~i 338 (898)
.|++++++++.+++++++++.|+++||||||+++ .++|.+ +..++|+ ++.|++++ ++++++|+|+||| ||++|+
T Consensus 81 ~~~~~~~~~~ll~~~l~~~~~p~a~GsGip~v~~-~l~~~~--~~~~~r~-~~~k~~~~-~lti~sG~s~GrE-GP~vqi 154 (465)
T 1ots_A 81 VAFLCSAVLAMFGYFLVRKYAPEAGGSGIPEIEG-ALEDQR--PVRWWRV-LPVKFFGG-LGTLGGGMVLGRE-GPTVQI 154 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGSSCSHHHHHH-HHTTCS--CCCHHHH-HHHHHHHH-HHHHHTTCSCBSH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCccccCCChHHHHH-HHhCCC--CCCcHHH-HHHHHHHH-HHHHhcCCCcCCc-chHHHH
Confidence 4567788888899999999999999999999999 777642 3344566 99999999 9999999999999 999999
Q ss_pred hhhhhhhhccccccCCCCHHHHHHHHHHHHhhhhhhhccCccccceeEEeeeccccchhh--HHHHHHHHHHHHHHHHHh
Q psy4183 339 RPCIGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLKT--LWRSFFCALIAAFVLRSI 416 (898)
Q Consensus 339 Ga~ig~~l~~~f~~~~~~~~~~r~lvaaGaAAGlaAaF~APLaGvlFalE~l~~~~~~~~--l~~~~~as~va~~v~~~l 416 (898)
|+++|++++|++|. .+++|||++++||+|||+||+||||++|++|++||+.++++.+. ++++++||++|+++.+.+
T Consensus 155 Ga~ig~~l~~~~~l--~~~~~~r~li~~GaaAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~~~~as~~a~~v~~~~ 232 (465)
T 1ots_A 155 GGNIGRMVLDIFRL--KGDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYRIF 232 (465)
T ss_dssp HHHHHHHHHHHTTC--CSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHTTTTSCSSSCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc--CCHHHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999862 38899999999999999999999999999999999999888766 999999999999999987
Q ss_pred ccCCCcceeeeeecccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-cC-CchhHHHHHHHHHhhheecc
Q psy4183 417 NPFGNEHSVLFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSR-LG-QYPVTEVLVITAITTLISFP 494 (898)
Q Consensus 417 ~~~g~~~~~~f~~~~~~~~~~~~l~~~lllGil~Gl~g~lF~~l~~~~~~~~~~~~-~~-~~p~~~~~l~glv~gll~~~ 494 (898)
+|+++. |+++.....+..++++++++|+++|++|.+|++.+.+.++++++.+ .+ .+++++.++++++++++.++
T Consensus 233 --~G~~~~--f~~~~~~~~~~~~l~~~illGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gl~~g~l~~~ 308 (465)
T 1ots_A 233 --NHEVAL--IDVGKLSDAPLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFV 308 (465)
T ss_dssp --SCSCCS--SCCCCCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --cCCCce--eecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHHHHHHHHHHHHH
Confidence 677764 3443333345678999999999999999999999999888776532 22 13457889999999999999
Q ss_pred CcccccccCCC-----CCchhHHHHHHHHHHHHHHHHHHHhcccccccccchhhhhhhHHHHHHHHHHHHhhhhcCccch
Q psy4183 495 NPFTRMSTKAG-----PGVYTAVWLLMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWI 569 (898)
Q Consensus 495 ~p~~~g~g~~~-----~g~~~~~~~L~~~l~~K~l~t~ltlgsG~pGG~f~Psl~iGA~lG~l~G~l~~~l~~~~p~~~~ 569 (898)
.|+..+++... ++. .....+..+++.|+++|++|+|+|.|||+|+|++++||++|+++|.+++.+. |+
T Consensus 309 ~P~~lG~G~~~i~~~~~~~-~~~~~l~~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~~---p~--- 381 (465)
T 1ots_A 309 APATSGGGFNLIPIATAGN-FSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELF---PQ--- 381 (465)
T ss_dssp CGGGSSCSTTHHHHHHHTC-SCHHHHHHHHHHHHHHHHHHHHTTCSSBSHHHHHHHHHHHHHHHHHHHHHHC---GG---
T ss_pred hHhhcCChHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHHHHHHHHHHHHHHHHHC---Cc---
Confidence 99987766211 111 2344577788999999999999999999999999999999999999887653 32
Q ss_pred hccccCCCCCCChhHHHHHHHHHHHhhhhccchhhhhccccccccchhhHHHHHHHHHHHHHHHHHhhhcc-ccccccc
Q psy4183 570 FAGECSTNDCITPGLYAMVGAAAVLGGVTRMTGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIG-GVLFSLE 647 (898)
Q Consensus 570 ~~~~~~~g~~i~p~~~alvGmaA~lag~~raPltaivl~~Eltg~~~~~~~~li~~~~AagiAa~f~apl~-g~lF~lE 647 (898)
.+.+|+.|+++||+|++++++|+|+|++++++|+|++ .++++|.++++.+|+.+++.++ ..+|...
T Consensus 382 --------~~~~~~~~alvGmaa~~a~v~raPlt~ivlv~Eltg~----~~~llpl~ia~~iA~~v~~~~~~~~iY~~~ 448 (465)
T 1ots_A 382 --------YHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDN----YQLILPMIITGLGATLLAQFTGGKPLYSAI 448 (465)
T ss_dssp --------GTCCHHHHHHHHHTHHHHHTSCCHHHHHHHHHHHHCC----GGGHHHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred --------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHHhCCCChHHHH
Confidence 3578999999999999999999999999999999997 8999999999999999998886 4666543
No 3
>4ene_A CLC-EC1, H(+)/CL(-) exchange transporter CLCA; membrane protein, coupled ION transporter, cell membrane, TR protein; HET: DMU MAL; 2.40A {Escherichia coli k-12} PDB: 1ots_A 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2fed_A 2fec_A 1otu_A 2htl_A 2ht2_A 3ejy_A 1ott_A 2h2s_A 4fg6_A 2ht4_A 4ftp_A 3ejz_A 2ht3_A 2htk_A ...
Probab=100.00 E-value=3.5e-57 Score=520.94 Aligned_cols=356 Identities=24% Similarity=0.303 Sum_probs=297.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcCCccccccc-cccccchhhhhhHHHHHhcCccccCCCCchh
Q psy4183 258 VFFIAWALLFASLAAGLVRMFAPYACGSGIPEQNYSDVEGSSLVVYVG-KSGHSSSKSCGRIMLAVSAGLSLRKGRTPWF 336 (898)
Q Consensus 258 ~~~il~~~~~~~l~~~L~~~~~p~a~GsGIp~v~~~~l~G~~~~~~l~-~~~~~~~K~l~~~ilav~sG~SlGrE~GP~v 336 (898)
+.+++++.+++.+++++++++.|+++||||||+++ .++|. +..+ +|+ ++.|++++ ++++++|+|+||| ||++
T Consensus 65 ~~~~~~~~~~~~~~~~l~~~~~p~a~GsGip~v~~-~l~~~---~~~~~~r~-~~~k~~~~-~lti~~G~s~GrE-GP~v 137 (446)
T 4ene_A 65 TVAFLCSAVLAMFGYFLVRKYAPEAGGSGIPEIEG-ALEDQ---RPVRWWRV-LPVKFFGG-LGTLGGGMVLGRE-GPTV 137 (446)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCGGGSSCSHHHHHH-HHHTC---SCCCHHHH-HHHHHHHH-HHHHHTTCSCBSH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHH-HHhCC---CccchHHH-HHHHHHHH-HHHHhcCCccCCc-chHH
Confidence 34556677788889999999999999999999999 67763 2344 455 99999999 9999999999999 9999
Q ss_pred hhhhhhhhhhccccccCCCCHHHHH-HHHHHHHhhhhhhhccCccccceeEEeeeccccch--hhHHHHHHHHHHHHHHH
Q psy4183 337 TLRPCIGNILSYLFPKYGRNEAKKR-EILSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPL--KTLWRSFFCALIAAFVL 413 (898)
Q Consensus 337 ~iGa~ig~~l~~~f~~~~~~~~~~r-~lvaaGaAAGlaAaF~APLaGvlFalE~l~~~~~~--~~l~~~~~as~va~~v~ 413 (898)
|+|+++|++++|++| ++++|+| ++++||+|||+||+||||++|++|++||+.++++. +.++++++|+++|++++
T Consensus 138 qiGa~ig~~~~~~~~---~~~~~~r~~ll~aGaaAG~aaaF~aPlaGvlFalE~l~~~~~~~~~~~~~~~~as~~a~~v~ 214 (446)
T 4ene_A 138 QIGGNIGRMVLDIFR---LKGDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMY 214 (446)
T ss_dssp HHHHHHHHHHHHHTT---CCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTTSCSSSCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Confidence 999999999999987 5666765 99999999999999999999999999999988776 78999999999999999
Q ss_pred HHhccCCCcceeeeeecccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCC--chhHHHHHHHHHhhhe
Q psy4183 414 RSINPFGNEHSVLFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSRLGQ--YPVTEVLVITAITTLI 491 (898)
Q Consensus 414 ~~l~~~g~~~~~~f~~~~~~~~~~~~l~~~lllGil~Gl~g~lF~~l~~~~~~~~~~~~~~~--~p~~~~~l~glv~gll 491 (898)
+.+ .|+++. |+.+....++..++++++++|+++|++|.+|++.+.+.++++++.+... ++++...+++++++++
T Consensus 215 ~~~--~g~~~~--~~~~~~~~~~~~~l~~~illGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~l 290 (446)
T 4ene_A 215 RIF--NHEVAL--IDVGKLSDAPLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLL 290 (446)
T ss_dssp HHT--TTTCCS--CCCCCCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHH--cCCCce--eecCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHH
Confidence 988 566653 3443333445678899999999999999999999999888766532111 2233344667788888
Q ss_pred eccCcccccccCC-----CCCchhHHHHHHHHHHHHHHHHHHHhcccccccccchhhhhhhHHHHHHHHHHHHhhhhcCc
Q psy4183 492 SFPNPFTRMSTKA-----GPGVYTAVWLLMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPH 566 (898)
Q Consensus 492 ~~~~p~~~g~g~~-----~~g~~~~~~~L~~~l~~K~l~t~ltlgsG~pGG~f~Psl~iGA~lG~l~G~l~~~l~~~~p~ 566 (898)
.++.|+..+++.. .++. .....+..+++.|+++|++|+|+|.|||+|+|++++||++|+++|..++.+. |+
T Consensus 291 ~~~~p~~~G~G~~~i~~~~~~~-~~~~~L~~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~~---p~ 366 (446)
T 4ene_A 291 GFVAPATSGGGFNLIPIATAGN-FSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELF---PQ 366 (446)
T ss_dssp HHHCGGGSSCCSTHHHHHHTTC-SCHHHHHHHHHHHHHHHHHHHTTTCSSBSHHHHHHHHHHHHHHHHHHHHHHC---GG
T ss_pred HHHhHhhcCCcHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHccCCCcchhHHHHHHHHHHHHHHHHHHHHhC---Cc
Confidence 8888988776621 1122 2344667888999999999999999999999999999999999999988753 32
Q ss_pred cchhccccCCCCCCChhHHHHHHHHHHHhhhhccchhhhhccccccccchhhHHHHHHHHHHHHHHHHHhhhcc-ccccc
Q psy4183 567 IWIFAGECSTNDCITPGLYAMVGAAAVLGGVTRMTGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIG-GVLFS 645 (898)
Q Consensus 567 ~~~~~~~~~~g~~i~p~~~alvGmaA~lag~~raPltaivl~~Eltg~~~~~~~~li~~~~AagiAa~f~apl~-g~lF~ 645 (898)
...+|+.|+++||+|++++++|+|+|++++++|+||+ .++++|.++++.+|+.+++-++ ..+|+
T Consensus 367 -----------~~~~~~~~a~vGmaa~~a~~~~aPlt~~vl~~Eltg~----~~~~lpl~ia~~ia~~v~~~~~~~~iY~ 431 (446)
T 4ene_A 367 -----------YHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDN----YQLILPMIITGLGATLLAQFTGGKPLYS 431 (446)
T ss_dssp -----------GTCCHHHHHHHHHTHHHHHHTCCHHHHHHHHHHHHCC----GGGHHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred -----------cccCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHCC----hhHHHHHHHHHHHHHHHHHHhCCCChHH
Confidence 2478999999999999999999999999999999997 8999999999999999999886 46665
Q ss_pred c
Q psy4183 646 L 646 (898)
Q Consensus 646 l 646 (898)
.
T Consensus 432 ~ 432 (446)
T 4ene_A 432 A 432 (446)
T ss_dssp H
T ss_pred H
Confidence 3
No 4
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=100.00 E-value=1.8e-55 Score=528.32 Aligned_cols=363 Identities=23% Similarity=0.390 Sum_probs=293.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcCCc--cccccccccccchhhhhhHHHHHhcCccccCCC
Q psy4183 255 LEYVFFIAWALLFASLAAGLVRMFAPYACGSGIPEQNYSDVEGSS--LVVYVGKSGHSSSKSCGRIMLAVSAGLSLRKGR 332 (898)
Q Consensus 255 ~~~~~~il~~~~~~~l~~~L~~~~~p~a~GsGIp~v~~~~l~G~~--~~~~l~~~~~~~~K~l~~~ilav~sG~SlGrE~ 332 (898)
..|+.|++++++++.++++++++++|+++||||||+|+ +++|.. .++++++|+ ++.|++++ ++++++|+|+|||
T Consensus 50 ~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGIp~v~~-~l~g~~~~~~~~~~~~~-~~~K~~~~-~l~igsG~s~GrE- 125 (632)
T 3org_A 50 AGYILYVVSGVALCLLSTFWCAVLSTEAEGSGLPQMKS-ILSGFYDKMRSALELRV-LFAKALGL-ICAIGGGLPVGWE- 125 (632)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCGGGCBCSHHHHHH-HTTTTHHHHGGGGSHHH-HHHHHHHH-HHHHHTTCSCBSH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHHH-HHhCccccccccccHHH-HHHHHHHH-HHHHhcCCCcccc-
Confidence 45677888999999999999999999999999999999 888875 567888888 99999999 9999999999999
Q ss_pred Cchhhhhhhhhhhhcc--ccccCCCCHHHHHHHHHHHHhhhhhhhccCccccceeEEeeeccccchhhHHHHHHHHHHHH
Q psy4183 333 TPWFTLRPCIGNILSY--LFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALIAA 410 (898)
Q Consensus 333 GP~v~iGa~ig~~l~~--~f~~~~~~~~~~r~lvaaGaAAGlaAaF~APLaGvlFalE~l~~~~~~~~l~~~~~as~va~ 410 (898)
||++|+||++|+.++| +|++++.++++||++++||+|||+||+||||+||++|++||++++|+.+.+|++++||++|+
T Consensus 126 GP~vqiGa~ig~~~~~~~~f~~~~~~~~~~r~ll~aGaaAG~aaaF~aPlaGvlFalE~~~~~~~~~~~~~~~~as~~a~ 205 (632)
T 3org_A 126 GPNVHIACIIAHQFYRLGVFKELCTDRALRLQTLAAACAVGLASSFGAPLGGVLYSIETIASFYLVQAFWKGVLSALSGA 205 (632)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTCSEEETTHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHHHHhCCccHhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 9999999999999999 77644458889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCcce-eeeeecc--cCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCchhHHHHHHHHH
Q psy4183 411 FVLRSINPFGNEHS-VLFYVEY--NKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSRLGQYPVTEVLVITAI 487 (898)
Q Consensus 411 ~v~~~l~~~g~~~~-~~f~~~~--~~~~~~~~l~~~lllGil~Gl~g~lF~~l~~~~~~~~~~~~~~~~p~~~~~l~glv 487 (898)
++++.+.. ..+. ..|...+ +.+++..++ +++++|+++|++|.+|++++.+..+++.+.+.+.++++++.+++++
T Consensus 206 ~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l-~~~~lGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (632)
T 3org_A 206 IVYELLYT--TPLVEAFEGTNFDASDVSRTQTL-LYAILGALMGVLGALFIRCVRSIYELRMRHYPGTNRYFLVGVVALF 282 (632)
T ss_dssp HHTTC--------------------CCCCSCTH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTTCCTHHHHHHHHHH
T ss_pred HHHHHhcc--CccccccccccccccCCCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Confidence 99886532 2211 1122221 345667788 9999999999999999999988876533323345677788888887
Q ss_pred hhheeccCcccccccC---------CCCCc----hhHHHHHHHHHHHHHHHHHHHhcccccccccchhhhhhhHHHHHHH
Q psy4183 488 TTLISFPNPFTRMSTK---------AGPGV----YTAVWLLMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVG 554 (898)
Q Consensus 488 ~gll~~~~p~~~g~g~---------~~~g~----~~~~~~L~~~l~~K~l~t~ltlgsG~pGG~f~Psl~iGA~lG~l~G 554 (898)
++.+.++ ...++.. .+... ......++.+++.|+++|++|+|+|+|||+|+|++++||++|+++|
T Consensus 283 ~~~l~~p--~~~g~~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~s~g~g~pGGif~P~l~iGA~~G~~~g 360 (632)
T 3org_A 283 ASALQYP--FRLFALDPRATINDLFKAVPLYQTDHFGWTELILMPIIKFILVALSIGLPLPAGVFVPSFLIGAGFGRLYG 360 (632)
T ss_dssp HHHHTTT--C------CHHHHHHHHSCC----------CCSSHHHHHHHHHHHHHTTSSSBCBCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--HHhcCCcHHHHHHHHHcCCccccccchhHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHH
Confidence 7765544 3322210 00000 0111135567899999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCccchhccccCCCCCCChhHHHHHHHHHHHhhhhccchhhhhccccccccchhhHHHHHHHHHHHHHHHH
Q psy4183 555 IGMQQLAFHYPHIWIFAGECSTNDCITPGLYAMVGAAAVLGGVTRMTGNILSYLFPKYGRNEAKKREILSAAAAAGVSVA 634 (898)
Q Consensus 555 ~l~~~l~~~~p~~~~~~~~~~~g~~i~p~~~alvGmaA~lag~~raPltaivl~~Eltg~~~~~~~~li~~~~AagiAa~ 634 (898)
.+++.+. |+ .++|+.||++||+|++++++|+|++++ +++|+||+ .++++|.++++.+|+.
T Consensus 361 ~~~~~~~---p~------------~~~p~~~a~vGmaa~~~~v~~ap~t~v-i~~E~tg~----~~~~lpl~ia~~~a~~ 420 (632)
T 3org_A 361 ELMRVVF---GN------------AIVPGSYAVVGAAAFTAGVTRALSCAV-IIFEVTGQ----IRHLVPVLISVLLAVI 420 (632)
T ss_dssp HHHHHHH---CT------------TSCHHHHHHHHHHHHHHHHSCCTTHHH-HHHHHTCC----CSCSHHHHHHHHHHHH
T ss_pred HHHHHhC---Cc------------ccchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCC----hhHHHHHHHHHHHHHH
Confidence 9887643 31 268999999999999999999999976 89999998 8899999999999999
Q ss_pred Hhhhcccccccc
Q psy4183 635 FGAPIGGVLFSL 646 (898)
Q Consensus 635 f~apl~g~lF~l 646 (898)
++.-+...+|..
T Consensus 421 v~~~~~~~iY~~ 432 (632)
T 3org_A 421 VGNAFNRSLYET 432 (632)
T ss_dssp HHHHHCCCHHHH
T ss_pred HHHHhCCCHHHH
Confidence 999887777763
No 5
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A
Probab=100.00 E-value=7.6e-39 Score=369.58 Aligned_cols=353 Identities=21% Similarity=0.267 Sum_probs=266.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc--ccC--Cch-hHHHH-H---HHHHhh-heeccCccccccc---
Q psy4183 436 IFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMS--RLG--QYP-VTEVL-V---ITAITT-LISFPNPFTRMST--- 502 (898)
Q Consensus 436 ~~~~l~~~lllGil~Gl~g~lF~~l~~~~~~~~~~~--~~~--~~p-~~~~~-l---~glv~g-ll~~~~p~~~g~g--- 502 (898)
..+.+...+++|+++|+++.+|...+++.++.+... ... .++ ++..+ + .+++.+ ++..+.|+..+++
T Consensus 28 ~~~l~l~~~liGi~~Gl~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~l~~~~~p~a~GsGIp~ 107 (466)
T 3nd0_A 28 HPRTLVAAIVVGLITGVLGAGFKSAVNNMLQWRSQLAQILAPIPPLAWLVTALISGGMVALSFWLMKRFAPDTSGSGIPQ 107 (466)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSCTHHHHHHHHHHHHHHHHHHHHHTTTCGGGSBCSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCCCCHHH
Confidence 345778889999999999999999999988876532 011 111 12222 1 122232 3335667766554
Q ss_pred --CCCCCchhHHHHHHHHHHHHHHHHHHHhcccccccccchhhhhhhHHHHHHHHHHHHhhhhcCccchhccccCCCCCC
Q psy4183 503 --KAGPGVYTAVWLLMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECSTNDCI 580 (898)
Q Consensus 503 --~~~~g~~~~~~~L~~~l~~K~l~t~ltlgsG~pGG~f~Psl~iGA~lG~l~G~l~~~l~~~~p~~~~~~~~~~~g~~i 580 (898)
...++..... -...+..|++.+.+|+++|.+.|+|+|++++||++|..+++.++
T Consensus 108 v~~~l~g~~~~~--~~~~~~~k~~~~~ltig~G~S~GrEGP~vqiGa~ig~~l~~~~~---------------------- 163 (466)
T 3nd0_A 108 IEGHLEGKLPLV--WQRVLPIKLVGGFLSLGAGMLAGFEGPTIQMGGSIGQMTGGWFK---------------------- 163 (466)
T ss_dssp HHHHTTSSSCCC--HHHHHHHHHHHHHHHHHTTCSCCTHHHHHHHHHHHHHHHHHHTT----------------------
T ss_pred HHHHHcCCCCCc--hHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHcC----------------------
Confidence 1111111111 13467789999999999999999999999999999999997542
Q ss_pred ChhHHHHHHHHHHHhhhhccchhhhhccccccccchhhHHHHHHHHHHHHHHHHHhhhccccccccccccccc--chhhH
Q psy4183 581 TPGLYAMVGAAAVLGGVTRMTGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSYYF--PLKTL 658 (898)
Q Consensus 581 ~p~~~alvGmaA~lag~~raPltaivl~~Eltg~~~~~~~~li~~~~AagiAa~f~apl~g~lF~lE~l~~~~--s~~~l 658 (898)
.+++|+|.++.|++||++|++|++|++|.+|++||+.+++ +.+.+
T Consensus 164 ---------------------------------~~~~~~r~ll~aGaAAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~ 210 (466)
T 3nd0_A 164 ---------------------------------ATQENQRILIAVGAGAGLATAFNAPLAGVALIGEEMHPRFRSQTLAY 210 (466)
T ss_dssp ---------------------------------CCHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHSSSCCCCSSCCTTH
T ss_pred ---------------------------------CChhHHHHHHHHHHHHHHHHHhCCchHHHHHHHHhhhccccHHHHHH
Confidence 1566789999999999999999999999999999999888 44668
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCcceeeeeeccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhH
Q psy4183 659 WRSFFCALIAAFVLRSINPFGNEHSVLFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSRLGQYPVT 738 (898)
Q Consensus 659 ~~~f~aSiiA~~v~~~l~~~g~~~~~~f~~~~~~~~~~~~l~~~ilLGii~Gllg~lF~~l~~~~~~~~~~~~~~~~~~~ 738 (898)
+|+++||++|+++++.+ .|+++. |..+....++..++++++++|+++|++|.+|+|.+.+.++++++.+ +..+..
T Consensus 211 ~~~~~as~~a~~v~~~~--~g~~~~--f~~~~~~~~~~~~l~~~illGi~~Gl~g~lf~~~~~~~~~~~~~~~-~~~~~~ 285 (466)
T 3nd0_A 211 HSLLFGCVMATIILRMI--RGQSAI--ISLTEFKRVPLDSLWMFIILGILFGVMGYTFNRGLFKVLDWFDRLP-PLATKW 285 (466)
T ss_dssp HHHHHHHHHHHHHHHHH--TCSSCS--SCCTTCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--cCCCCc--eecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cccHHH
Confidence 89999999999999987 565554 3333334456789999999999999999999999988887655321 123566
Q ss_pred HHHHHHHHHHHhhccccccccchhhHHHHHhhhcCCCcCCCchhhHhhhcccccCCCCCCCCCCCChhhHHHHHHHHHHH
Q psy4183 739 EVLVITAITTLISFPNPFTRMSTSQLIYLLFSQCGGVSYNNGLCDYVINHNATSTSNPTTSEAGPGVYTAVWLLMITLVL 818 (898)
Q Consensus 739 ~~~~~~~i~g~l~~~~p~~~~~~~~~i~~~f~~~~g~~y~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~llv~ 818 (898)
++.+++++++++.+..|+.. |++| +..+..++++ + ....++.++++
T Consensus 286 ~~~l~g~~~g~l~~~~p~~~---------------G~G~--~~i~~~~~~~----------------~-~~~~L~~~~~~ 331 (466)
T 3nd0_A 286 KGFLLGSIIGILSLFPLPLT---------------DGGD--NAVLWAFNSQ----------------S-HFSTLILVFCG 331 (466)
T ss_dssp HHHHHHHHHHHHTTSSSSCS---------------SSSH--HHHHHHTTSC----------------C-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHc---------------CCcH--HHHHHHHcCC----------------c-cHHHHHHHHHH
Confidence 77888999999888777553 3333 2333333321 0 24456778889
Q ss_pred HHHHHHHHhccCccccccchHhHHHHHHHHHHHHHHHHhhhcCCcchhccccCCCCCcCChHHHHHHHHHHHHHHhhcCC
Q psy4183 819 KLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECSTNDCITPGLYAMVGAAAVLGGVTRMT 898 (898)
Q Consensus 819 K~~~T~lt~gsG~pGGif~PsL~IGA~~G~l~G~ll~~l~~~~p~~~~~~~~~~~~~~~~p~~~AlvGmAa~lagvtrat 898 (898)
|+++|++|+|+|+|||+|+|+|++||++|+++|.+++.+ +|+. ..+|+.||++||+|++++++|++
T Consensus 332 K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~---~p~~-----------~~~~~~~a~vGmaa~~a~v~~aP 397 (466)
T 3nd0_A 332 RFLLTLICYGSGAIGGIFAPMLGIASIVSVAMARHFHLL---FPSQ-----------IPEPAVMAIAGMGALVAATVRAP 397 (466)
T ss_dssp HHHHHHHHHHTTCBCCSHHHHHHHHHHHHHHHHHHHHHH---CTTT-----------CSSTHHHHHHTTSHHHHHHHSCH
T ss_pred HHHHHHHHHhCCCCCceehHHHHHHHHHHHHHHHHHHHh---CCcc-----------ccCHHHHHHHHHHHHHHHHHhhH
Confidence 999999999999999999999999999999999999876 5532 26899999999999999999984
No 6
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Probab=100.00 E-value=1e-38 Score=369.38 Aligned_cols=354 Identities=22% Similarity=0.258 Sum_probs=267.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc--cC--Cch-h----HHHHHHHHHhhhee-ccCccccccc----
Q psy4183 437 FFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSR--LG--QYP-V----TEVLVITAITTLIS-FPNPFTRMST---- 502 (898)
Q Consensus 437 ~~~l~~~lllGil~Gl~g~lF~~l~~~~~~~~~~~~--~~--~~p-~----~~~~l~glv~gll~-~~~p~~~g~g---- 502 (898)
.+.+...+++|+++|+++.+|.+.+++.++.+.... .. ..+ + +..++.+++.+.+. .+.|+..+++
T Consensus 33 ~~~~~~~~liGv~~Gl~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~~~~p~a~GsGip~v 112 (465)
T 1ots_A 33 LAILFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHTADNYPLLLTVAFLCSAVLAMFGYFLVRKYAPEAGGSGIPEI 112 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGSSCSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHhCccccCCChHHH
Confidence 356778899999999999999999998887754320 10 111 1 12233344444433 3567665544
Q ss_pred -CCCCCchhHHHHHHHHHHHHHHHHHHHhcccccccccchhhhhhhHHHHHHHHHHHHhhhhcCccchhccccCCCCCCC
Q psy4183 503 -KAGPGVYTAVWLLMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECSTNDCIT 581 (898)
Q Consensus 503 -~~~~g~~~~~~~L~~~l~~K~l~t~ltlgsG~pGG~f~Psl~iGA~lG~l~G~l~~~l~~~~p~~~~~~~~~~~g~~i~ 581 (898)
...++..... -....+.|++.+.+++++|.+.|+|+|++++||++|..+++.++.
T Consensus 113 ~~~l~~~~~~~--~~r~~~~k~~~~~lti~sG~s~GrEGP~vqiGa~ig~~l~~~~~l---------------------- 168 (465)
T 1ots_A 113 EGALEDQRPVR--WWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLDIFRL---------------------- 168 (465)
T ss_dssp HHHHTTCSCCC--HHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHHHHTTC----------------------
T ss_pred HHHHhCCCCCC--cHHHHHHHHHHHHHHHhcCCCcCCcchHHHHHHHHHHHHHHHhcc----------------------
Confidence 0001110000 145678999999999999999999999999999999999865420
Q ss_pred hhHHHHHHHHHHHhhhhccchhhhhccccccccchhhHHHHHHHHHHHHHHHHHhhhcccccccccccccccchhh--HH
Q psy4183 582 PGLYAMVGAAAVLGGVTRMTGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLKT--LW 659 (898)
Q Consensus 582 p~~~alvGmaA~lag~~raPltaivl~~Eltg~~~~~~~~li~~~~AagiAa~f~apl~g~lF~lE~l~~~~s~~~--l~ 659 (898)
.+++|+|.++.|++|||+|++|++|++|.+|++||+.++++.+. ++
T Consensus 169 --------------------------------~~~~~~r~li~~GaaAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~ 216 (465)
T 1ots_A 169 --------------------------------KGDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIK 216 (465)
T ss_dssp --------------------------------CSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHTTTTSCSSSCCCCCHH
T ss_pred --------------------------------CCHHHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHhcchHHHHHH
Confidence 15677899999999999999999999999999999999988776 99
Q ss_pred HHHHHHHHHHHHHHHhccCCCCcceeeeeeccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cCC-chh
Q psy4183 660 RSFFCALIAAFVLRSINPFGNEHSVLFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSR-LGQ-YPV 737 (898)
Q Consensus 660 ~~f~aSiiA~~v~~~l~~~g~~~~~~f~~~~~~~~~~~~l~~~ilLGii~Gllg~lF~~l~~~~~~~~~~~~-~~~-~~~ 737 (898)
++++||++|+++++.+ +|+++. +..+.....+..++++++++|+++|++|.+|+|.+.+.++++++.+ .+. ++.
T Consensus 217 ~~~~as~~a~~v~~~~--~G~~~~--f~~~~~~~~~~~~l~~~illGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~ 292 (465)
T 1ots_A 217 AVFIGVIMSTIMYRIF--NHEVAL--IDVGKLSDAPLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNITKWV 292 (465)
T ss_dssp HHHHHHHHHHHHHHHH--SCSCCS--SCCCCCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHH--cCCCce--eecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHH
Confidence 9999999999999987 666654 3333333345668999999999999999999999988888655422 222 234
Q ss_pred HHHHHHHHHHHHhhccccccccchhhHHHHHhhhcCCCcCCCchhhHhhhcccccCCCCCCCCCCCChhhHHHHHHHHHH
Q psy4183 738 TEVLVITAITTLISFPNPFTRMSTSQLIYLLFSQCGGVSYNNGLCDYVINHNATSTSNPTTSEAGPGVYTAVWLLMITLV 817 (898)
Q Consensus 738 ~~~~~~~~i~g~l~~~~p~~~~~~~~~i~~~f~~~~g~~y~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~llv 817 (898)
.++.+++++++++.+..|+. .|++| ++.+.+++++. ....++.+++
T Consensus 293 ~~~~i~gl~~g~l~~~~P~~---------------lG~G~--~~i~~~~~~~~-----------------~~~~l~~~~~ 338 (465)
T 1ots_A 293 LMGGAIGGLCGLLGFVAPAT---------------SGGGF--NLIPIATAGNF-----------------SMGMLVFIFV 338 (465)
T ss_dssp HHHHHHHHHHHHHHHHCGGG---------------SSCST--THHHHHHHTCS-----------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhh---------------cCChH--HHHHHHHcCCc-----------------hHHHHHHHHH
Confidence 77888899999888766644 44444 34555554321 2445677788
Q ss_pred HHHHHHHHHhccCccccccchHhHHHHHHHHHHHHHHHHhhhcCCcchhccccCCCCCcCChHHHHHHHHHHHHHHhhcC
Q psy4183 818 LKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECSTNDCITPGLYAMVGAAAVLGGVTRM 897 (898)
Q Consensus 818 ~K~~~T~lt~gsG~pGGif~PsL~IGA~~G~l~G~ll~~l~~~~p~~~~~~~~~~~~~~~~p~~~AlvGmAa~lagvtra 897 (898)
+|+++|++|+|+|+|||+|+|+|++||++|+++|.+++.+ +|+. +.+|+.||++||+|+++|++|+
T Consensus 339 ~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~---~p~~-----------~~~~~~~alvGmaa~~a~v~ra 404 (465)
T 1ots_A 339 ARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVEL---FPQY-----------HLEAGTFAIAGMGALLAASIRA 404 (465)
T ss_dssp HHHHHHHHHHHTTCSSBSHHHHHHHHHHHHHHHHHHHHHH---CGGG-----------TCCHHHHHHHHHTHHHHHTSCC
T ss_pred HHHHHHHHHHcCCCChhhhHHHHHHHHHHHHHHHHHHHHH---CCcc-----------cccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998876 5532 3689999999999999999997
Q ss_pred C
Q psy4183 898 T 898 (898)
Q Consensus 898 t 898 (898)
+
T Consensus 405 P 405 (465)
T 1ots_A 405 P 405 (465)
T ss_dssp H
T ss_pred H
Confidence 4
No 7
>4ene_A CLC-EC1, H(+)/CL(-) exchange transporter CLCA; membrane protein, coupled ION transporter, cell membrane, TR protein; HET: DMU MAL; 2.40A {Escherichia coli k-12} PDB: 1ots_A 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2fed_A 2fec_A 1otu_A 2htl_A 2ht2_A 3ejy_A 1ott_A 2h2s_A 4fg6_A 2ht4_A 4ftp_A 3ejz_A 2ht3_A 2htk_A ...
Probab=100.00 E-value=2.5e-38 Score=364.16 Aligned_cols=350 Identities=23% Similarity=0.284 Sum_probs=258.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc--ccCCchh---HHH----HHHHHHhhhe-eccCcccccccCCCC
Q psy4183 437 FFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMS--RLGQYPV---TEV----LVITAITTLI-SFPNPFTRMSTKAGP 506 (898)
Q Consensus 437 ~~~l~~~lllGil~Gl~g~lF~~l~~~~~~~~~~~--~~~~~p~---~~~----~l~glv~gll-~~~~p~~~g~g~~~~ 506 (898)
.+++...+++|+++|+++.+|....++.++++... ....+++ ... .+.+++.+.+ -.+.|+..+++
T Consensus 18 ~~~~~~~~liGi~~Gl~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsG---- 93 (446)
T 4ene_A 18 LAILFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHTADNYPLLLTVAFLCSAVLAMFGYFLVRKYAPEAGGSG---- 93 (446)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGSSCS----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCC----
Confidence 46778889999999999999999999988876542 1111221 111 1223333333 23466655443
Q ss_pred CchhHHHH--------HHHHHHHHHHHHHHHhcccccccccchhhhhhhHHHHHHHHHHHHhhhhcCccchhccccCCCC
Q psy4183 507 GVYTAVWL--------LMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECSTND 578 (898)
Q Consensus 507 g~~~~~~~--------L~~~l~~K~l~t~ltlgsG~pGG~f~Psl~iGA~lG~l~G~l~~~l~~~~p~~~~~~~~~~~g~ 578 (898)
.++.... -...+..|++.+.+|+++|.+.|+|+|++++||++|..+++.++.
T Consensus 94 -ip~v~~~l~~~~~~~~~r~~~~k~~~~~lti~~G~s~GrEGP~vqiGa~ig~~~~~~~~~------------------- 153 (446)
T 4ene_A 94 -IPEIEGALEDQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLDIFRL------------------- 153 (446)
T ss_dssp -HHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHHHHTTC-------------------
T ss_pred -HHHHHHHHhCCCccchHHHHHHHHHHHHHHHhcCCccCCcchHHHHHHHHHHHHHHHcCC-------------------
Confidence 2221111 134678999999999999999999999999999999998865421
Q ss_pred CCChhHHHHHHHHHHHhhhhccchhhhhccccccccchhhHH-HHHHHHHHHHHHHHHhhhcccccccccccccccch--
Q psy4183 579 CITPGLYAMVGAAAVLGGVTRMTGNILSYLFPKYGRNEAKKR-EILSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPL-- 655 (898)
Q Consensus 579 ~i~p~~~alvGmaA~lag~~raPltaivl~~Eltg~~~~~~~-~li~~~~AagiAa~f~apl~g~lF~lE~l~~~~s~-- 655 (898)
+++|+| .++.|++|||+|++|++|++|.+|++||+.+++++
T Consensus 154 ------------------------------------~~~~~r~~ll~aGaaAG~aaaF~aPlaGvlFalE~l~~~~~~~~ 197 (446)
T 4ene_A 154 ------------------------------------KGDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTL 197 (446)
T ss_dssp ------------------------------------CSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTTSCSSSCCC
T ss_pred ------------------------------------CHHHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHhhcchhH
Confidence 444555 99999999999999999999999999999988877
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCCCCcceeeeeeccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCc
Q psy4183 656 KTLWRSFFCALIAAFVLRSINPFGNEHSVLFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSRLGQY 735 (898)
Q Consensus 656 ~~l~~~f~aSiiA~~v~~~l~~~g~~~~~~f~~~~~~~~~~~~l~~~ilLGii~Gllg~lF~~l~~~~~~~~~~~~~~~~ 735 (898)
+.++++++||++|+++++.+ .|+++. +..+....++..++++++++|+++|++|.+|+|.+.+.++++++.+.+++
T Consensus 198 ~~~~~~~~as~~a~~v~~~~--~g~~~~--~~~~~~~~~~~~~l~~~illGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~ 273 (446)
T 4ene_A 198 ISIKAVFIGVIMSTIMYRIF--NHEVAL--IDVGKLSDAPLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNI 273 (446)
T ss_dssp CCHHHHHHHHHHHHHHHHHT--TTTCCS--CCCCCCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHH--cCCCce--eecCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch
Confidence 78999999999999999987 555443 33333334556788999999999999999999999888876554222211
Q ss_pred -h-hHHHHHHHHHHHHhhccccccccchhhHHHHHhhhcCCCcCCCchhhHhhhcccccCCCCCCCCCCCChhhHHHHHH
Q psy4183 736 -P-VTEVLVITAITTLISFPNPFTRMSTSQLIYLLFSQCGGVSYNNGLCDYVINHNATSTSNPTTSEAGPGVYTAVWLLM 813 (898)
Q Consensus 736 -~-~~~~~~~~~i~g~l~~~~p~~~~~~~~~i~~~f~~~~g~~y~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Ll 813 (898)
+ .....+++++++++.+..| +..|++|+ ..+..++++. ....++
T Consensus 274 ~~~~~~~~l~g~~~g~l~~~~p---------------~~~G~G~~--~i~~~~~~~~-----------------~~~~L~ 319 (446)
T 4ene_A 274 TKWVLMGGAIGGLCGLLGFVAP---------------ATSGGGFN--LIPIATAGNF-----------------SMGMLV 319 (446)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCG---------------GGSSCCST--HHHHHHTTCS-----------------CHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhH---------------hhcCCcHH--HHHHHHcCCc-----------------hHHHHH
Confidence 1 1222345566666655444 45566553 4444443221 234567
Q ss_pred HHHHHHHHHHHHHhccCccccccchHhHHHHHHHHHHHHHHHHhhhcCCcchhccccCCCCCcCChHHHHHHHHHHHHHH
Q psy4183 814 ITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECSTNDCITPGLYAMVGAAAVLGG 893 (898)
Q Consensus 814 ~llv~K~~~T~lt~gsG~pGGif~PsL~IGA~~G~l~G~ll~~l~~~~p~~~~~~~~~~~~~~~~p~~~AlvGmAa~lag 893 (898)
.+++.|+++|++|+|+|+|||+|+|+|++||++|+++|.+++.+ +|+. ..+|+.||++||+|+++|
T Consensus 320 ~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~---~p~~-----------~~~~~~~a~vGmaa~~a~ 385 (446)
T 4ene_A 320 FIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVEL---FPQY-----------HLEAGTFAIAGMGALLAA 385 (446)
T ss_dssp HHHHHHHHHHHHHHTTTCSSBSHHHHHHHHHHHHHHHHHHHHHH---CGGG-----------TCCHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHccCCCcchhHHHHHHHHHHHHHHHHHHHHh---CCcc-----------ccCHHHHHHHHHHHHHHH
Confidence 78889999999999999999999999999999999999999876 4532 268999999999999999
Q ss_pred hhcCC
Q psy4183 894 VTRMT 898 (898)
Q Consensus 894 vtrat 898 (898)
++|++
T Consensus 386 ~~~aP 390 (446)
T 4ene_A 386 SIRAP 390 (446)
T ss_dssp HTCCH
T ss_pred HHccH
Confidence 99984
No 8
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=100.00 E-value=6.6e-38 Score=376.02 Aligned_cols=368 Identities=23% Similarity=0.325 Sum_probs=257.6
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc--ccC---Cch-h-HHHHHHHHHhhhe-eccCccccccc--
Q psy4183 433 KPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMS--RLG---QYP-V-TEVLVITAITTLI-SFPNPFTRMST-- 502 (898)
Q Consensus 433 ~~~~~~~l~~~lllGil~Gl~g~lF~~l~~~~~~~~~~~--~~~---~~p-~-~~~~l~glv~gll-~~~~p~~~g~g-- 502 (898)
.++..+++...+++|++.|+++.+|...+.+..+.+... ... .+. + +..++.+++.+.+ .++.|+..|+|
T Consensus 4 ~~~~~r~~~~~~lvGi~~gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGIp 83 (632)
T 3org_A 4 LMYLLRLVCFLTLLGVTAALFIFAVDLAVHGLEELRMKISRLAGRFAGYILYVVSGVALCLLSTFWCAVLSTEAEGSGLP 83 (632)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGCBCSHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHH
Confidence 355667888899999999999999999998887765321 000 111 1 1234444455544 47788877665
Q ss_pred ---CCCCCchh--HHHHHHHHHHHHHHHHHHHhcccccccccchhhhhhhHHHHHHHH--HHHHhhhhcCccchhccccC
Q psy4183 503 ---KAGPGVYT--AVWLLMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGI--GMQQLAFHYPHIWIFAGECS 575 (898)
Q Consensus 503 ---~~~~g~~~--~~~~L~~~l~~K~l~t~ltlgsG~pGG~f~Psl~iGA~lG~l~G~--l~~~l~~~~p~~~~~~~~~~ 575 (898)
...+|..+ .-..-...++.|++.+++++|+|.+.|+|+|++++||++|..+++ .++..
T Consensus 84 ~v~~~l~g~~~~~~~~~~~~~~~~K~~~~~l~igsG~s~GrEGP~vqiGa~ig~~~~~~~~f~~~--------------- 148 (632)
T 3org_A 84 QMKSILSGFYDKMRSALELRVLFAKALGLICAIGGGLPVGWEGPNVHIACIIAHQFYRLGVFKEL--------------- 148 (632)
T ss_dssp HHHHHTTTTHHHHGGGGSHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHTTSHHHHHH---------------
T ss_pred HHHHHHhCccccccccccHHHHHHHHHHHHHHHhcCCCccccchHHHHHHHHHHHHhhhhhhccc---------------
Confidence 11122210 001124578899999999999999999999999999999997765 44321
Q ss_pred CCCCCChhHHHHHHHHHHHhhhhccchhhhhccccccccchhhHHHHHHHHHHHHHHHHHhhhcccccccccccccccch
Q psy4183 576 TNDCITPGLYAMVGAAAVLGGVTRMTGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPL 655 (898)
Q Consensus 576 ~g~~i~p~~~alvGmaA~lag~~raPltaivl~~Eltg~~~~~~~~li~~~~AagiAa~f~apl~g~lF~lE~l~~~~s~ 655 (898)
..+++|+|.++.|++|||+|++|++|++|.+|++||++++|+.
T Consensus 149 -------------------------------------~~~~~~~r~ll~aGaaAG~aaaF~aPlaGvlFalE~~~~~~~~ 191 (632)
T 3org_A 149 -------------------------------------CTDRALRLQTLAAACAVGLASSFGAPLGGVLYSIETIASFYLV 191 (632)
T ss_dssp -------------------------------------HHSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTCSEEET
T ss_pred -------------------------------------cCCHHHHHHHHHHHHHHHHHHHhCCccHhHHHHHHHHHHHHhH
Confidence 0156678899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCCCCcc-eeeeee--ccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy4183 656 KTLWRSFFCALIAAFVLRSINPFGNEHS-VLFYVE--YNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSRL 732 (898)
Q Consensus 656 ~~l~~~f~aSiiA~~v~~~l~~~g~~~~-~~f~~~--~~~~~~~~~l~~~ilLGii~Gllg~lF~~l~~~~~~~~~~~~~ 732 (898)
+.+|+++++|++|+++++.+. +.... ..+..+ .+.+++..++ +++++|+++|++|.+|++++++..+++.++..
T Consensus 192 ~~~~~~~~as~~a~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l-~~~~lGi~~Gl~g~~f~~~~~~~~~~~~~~~~ 268 (632)
T 3org_A 192 QAFWKGVLSALSGAIVYELLY--TTPLVEAFEGTNFDASDVSRTQTL-LYAILGALMGVLGALFIRCVRSIYELRMRHYP 268 (632)
T ss_dssp THHHHHHHHHHHHHHHTTC--------------------CCCCSCTH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSST
T ss_pred HHHHHHHHHHHHHHHHHHHhc--cCccccccccccccccCCCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999988652 21111 012111 1345677788 99999999999999999999887765332233
Q ss_pred CCchhHHHHHHHHHHHHhhccccccccchhhHHHHHhhhcCCCcCCCchhhHhhhcccccCCCCCCCCCCCChhhHHHHH
Q psy4183 733 GQYPVTEVLVITAITTLISFPNPFTRMSTSQLIYLLFSQCGGVSYNNGLCDYVINHNATSTSNPTTSEAGPGVYTAVWLL 812 (898)
Q Consensus 733 ~~~~~~~~~~~~~i~g~l~~~~p~~~~~~~~~i~~~f~~~~g~~y~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L 812 (898)
..++..++.+++++++.+.+|.......+.+.+..++.++.. . + .+. ..+..+
T Consensus 269 ~~~~~~~~~~~~~~~~~l~~p~~~g~~~~~~~i~~l~~~~~~---~----~-------------------~~~-~~~~~l 321 (632)
T 3org_A 269 GTNRYFLVGVVALFASALQYPFRLFALDPRATINDLFKAVPL---Y----Q-------------------TDH-FGWTEL 321 (632)
T ss_dssp TCCTHHHHHHHHHHHHHHTTTC------CHHHHHHHHSCC-------------------------------------CCS
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCcc---c----c-------------------ccc-hhHHHH
Confidence 456777888888888776655432221122222222221100 0 0 000 011235
Q ss_pred HHHHHHHHHHHHHHhccCccccccchHhHHHHHHHHHHHHHHHHhhhcCCcchhccccCCCCCcCChHHHHHHHHHHHHH
Q psy4183 813 MITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECSTNDCITPGLYAMVGAAAVLG 892 (898)
Q Consensus 813 l~llv~K~~~T~lt~gsG~pGGif~PsL~IGA~~G~l~G~ll~~l~~~~p~~~~~~~~~~~~~~~~p~~~AlvGmAa~la 892 (898)
+.++++|+++|++|+|+|+|||+|+|+|++||++|+++|.+++.+ +|+. .+|+.||++||||+++
T Consensus 322 ~~~~~~k~~~t~~s~g~g~pGGif~P~l~iGA~~G~~~g~~~~~~---~p~~------------~~p~~~a~vGmaa~~~ 386 (632)
T 3org_A 322 ILMPIIKFILVALSIGLPLPAGVFVPSFLIGAGFGRLYGELMRVV---FGNA------------IVPGSYAVVGAAAFTA 386 (632)
T ss_dssp SHHHHHHHHHHHHHTTSSSBCBCHHHHHHHHHHHHHHHHHHHHHH---HCTT------------SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHh---CCcc------------cchHHHHHHHHHHHHH
Confidence 567789999999999999999999999999999999999998865 4531 5899999999999999
Q ss_pred HhhcC
Q psy4183 893 GVTRM 897 (898)
Q Consensus 893 gvtra 897 (898)
|++|+
T Consensus 387 ~v~~a 391 (632)
T 3org_A 387 GVTRA 391 (632)
T ss_dssp HHSCC
T ss_pred HHHHH
Confidence 99996
No 9
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=13.77 E-value=3e+02 Score=21.71 Aligned_cols=31 Identities=26% Similarity=0.415 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy4183 701 PFVGLGVIGGIIAYIFIRLNLKWCRYRKMSR 731 (898)
Q Consensus 701 ~~ilLGii~Gllg~lF~~l~~~~~~~~~~~~ 731 (898)
|.+++++++|++=....-..++-..++|+++
T Consensus 13 wiIi~svl~GLllL~li~~~LwK~GFFkR~~ 43 (54)
T 2knc_A 13 WWVLVGVLGGLLLLTILVLAMWKVGFFKRNR 43 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccCCC
Confidence 4567788888886655555555555666544
No 10
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=10.85 E-value=72 Score=23.28 Aligned_cols=29 Identities=24% Similarity=0.188 Sum_probs=16.6
Q ss_pred cccccchhhhhhHhHh-hhhhccchhhccc
Q psy4183 57 IPFVGLGVIGGIIAYI-FIRLNLKWCRYRK 85 (898)
Q Consensus 57 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 85 (898)
++.+..|+++|+.... .+-.-+-+||.||
T Consensus 12 ~~~I~~~vv~Gv~ll~~iv~~~~~~~rRr~ 41 (41)
T 2k9y_A 12 NLAVIGGVAVGVVLLLVLAGVGFFIHRRRK 41 (41)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHSSSSSCC
T ss_pred eEEEEeehhHHHHHHHHHHHHheeEeeecC
Confidence 4556777888877655 3333334555443
Done!