RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4183
         (898 letters)



>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli
           [TaxId: 562]}
          Length = 444

 Score =  111 bits (278), Expect = 2e-26
 Identities = 83/365 (22%), Positives = 136/365 (37%), Gaps = 30/365 (8%)

Query: 243 MGSNKEGFMAYTLEYVFFIAWALLFASLAAGLVRMFAPYACGSGIPEQNYSDVEGSSLVV 302
           MG+       Y L        + + A     LVR +AP A GSGIPE     +EG+    
Sbjct: 49  MGALVHTADNYPLLLTVAFLCSAVLAMFGYFLVRKYAPEAGGSGIPE-----IEGALEDQ 103

Query: 303 YVGKSGHSSSKSCGRIMLAVSAGLSLRKGRTPWFTLRPCIGNILSYLFPKYGRNEAKKRE 362
              +            +  +  G+ L +   P   +   IG ++  +F    + +  +  
Sbjct: 104 RPVRWWRVLPVKFFGGLGTLGGGMVLGREG-PTVQIGGNIGRMVLDIFRL--KGDEARHT 160

Query: 363 ILSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALIAAFVLRSINPFGNE 422
           +L+  AAAG++ AF AP+ G+LF +EE+   F  +    S     I   +   +    N 
Sbjct: 161 LLATGAAAGLAAAFNAPLAGILFIIEEMRPQF--RYTLISIKAVFIGVIMSTIMYRIFNH 218

Query: 423 HSVLFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSRLGQY--PVTE 480
              L  V          L  ++ LG+I GI   IF +  L           G     V  
Sbjct: 219 EVALIDVGKLSDAPLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNITKWVLM 278

Query: 481 VLVITAITTLISFPNPFTRMSTKAGPGVYT----AVWLLMITLVLKLVLTVFTFGIKVPC 536
              I  +  L+ F  P T         + T    ++ +L+   V +++ T+  F    P 
Sbjct: 279 GGAIGGLCGLLGFVAPATSGGGFNLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPG 338

Query: 537 GLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECSTNDCITPGLYAMVGAAAVLGG 596
           G+F P L LG ++G   G+   +L   Y               +  G +A+ G  A+L  
Sbjct: 339 GIFAPMLALGTVLGTAFGMVAVELFPQYH--------------LEAGTFAIAGMGALLAA 384

Query: 597 VTRMT 601
             R  
Sbjct: 385 SIRAP 389



 Score = 86.0 bits (212), Expect = 3e-18
 Identities = 67/409 (16%), Positives = 122/409 (29%), Gaps = 67/409 (16%)

Query: 507 GVYTAVWLLMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQL------ 560
           G+    +   +  +    +            L   +     ++       +++       
Sbjct: 31  GLAAVAFDKGVAWLQNQRMGALVHTADNYPLLLTVAFLCSAVLAMFGYFLVRKYAPEAGG 90

Query: 561 --------AFHYPHIWIFAGECSTNDCITPGLYAMVGAAAVLGGVTRMTGNILSYLFPKY 612
                   A        +            G           G   ++ GNI   +   +
Sbjct: 91  SGIPEIEGALEDQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLDIF 150

Query: 613 G-RNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALIAAFV 671
             + +  +  +L+  AAAG++ AF AP+ G+LF +EE+   F  +    S     I   +
Sbjct: 151 RLKGDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQF--RYTLISIKAVFIGVIM 208

Query: 672 LRSINPFGNEHSVLFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSR 731
              +    N    L  V          L  ++ LG+I GI   IF +  L          
Sbjct: 209 STIMYRIFNHEVALIDVGKLSDAPLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLHRVH 268

Query: 732 LGQY--PVTEVLVITAITTLISFPNPFTRMSTSQLIYLLFSQCGGVSYNNGLCDYVINHN 789
            G     V     I  +  L+ F  P T      LI +  +                   
Sbjct: 269 GGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGN----------------- 311

Query: 790 ATSTSNPTTSEAGPGVYTAVWLLMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRI 849
                             ++ +L+   V +++ T+  F    P G+F P L LG ++G  
Sbjct: 312 -----------------FSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTA 354

Query: 850 VGIGMQQLAFHYPHIWIFAGECSTNDCITPGLYAMVGAAAVLGGVTRMT 898
            G+   +L   Y               +  G +A+ G  A+L    R  
Sbjct: 355 FGMVAVELFPQYH--------------LEAGTFAIAGMGALLAASIRAP 389



 Score = 36.7 bits (84), Expect = 0.010
 Identities = 24/139 (17%), Positives = 38/139 (27%), Gaps = 5/139 (3%)

Query: 26  FHVLRSINPFGNEHSVLFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRK 85
             +   +    N    L  V          L  ++ LG+I GI   IF +  L       
Sbjct: 206 VIMSTIMYRIFNHEVALIDVGKLSDAPLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLH 265

Query: 86  MSRLGQY--PVTEVLVITAITTLISFPNPFTRMSTSQLIYLLFSQ---CGGLSMDLCSSS 140
               G     V     I  +  L+ F  P T      LI +  +     G L     +  
Sbjct: 266 RVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGNFSMGMLVFIFVARV 325

Query: 141 VLPSGSFGLVFQTPLIHSL 159
           +     F       +   +
Sbjct: 326 ITTLLCFSSGAPGGIFAPM 344


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.142    0.456 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,485,927
Number of extensions: 169601
Number of successful extensions: 604
Number of sequences better than 10.0: 1
Number of HSP's gapped: 596
Number of HSP's successfully gapped: 20
Length of query: 898
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 805
Effective length of database: 1,130,706
Effective search space: 910218330
Effective search space used: 910218330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.0 bits)