BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4188
(98 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q75NR7|RECQ4_MOUSE ATP-dependent DNA helicase Q4 OS=Mus musculus GN=Recql4 PE=2 SV=2
Length = 1216
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Query: 28 EDLLISDIHSLVNSYRDTNFTGRSIARIFHGIPSPNFPAIVFGRN-RYWRSHMDQDFGLL 86
ED + D+ L++ + F+GR++ARIFHGI SP +PA V+G + R+WR ++ DF L
Sbjct: 1144 EDQIRRDVRQLLSLRPEERFSGRAVARIFHGIASPCYPAQVYGLDRRFWRKYLHLDFHAL 1203
Query: 87 CKLAARELI 95
LA EL+
Sbjct: 1204 MHLATEELL 1212
>sp|O94761|RECQ4_HUMAN ATP-dependent DNA helicase Q4 OS=Homo sapiens GN=RECQL4 PE=1 SV=1
Length = 1208
Score = 63.5 bits (153), Expect = 4e-10, Method: Composition-based stats.
Identities = 39/107 (36%), Positives = 59/107 (55%), Gaps = 11/107 (10%)
Query: 2 LKSKLRRYFQDENDV------DATAPEIKLTK----EDLLISDIHSLVNSYRDTNFTGRS 51
LK L RYF++E DA PE + ED + DI ++ + F+ R+
Sbjct: 1100 LKDLLGRYFEEEEGQEPGGMEDAQGPEPGQARLQDWEDQVRCDIRQFLSLRPEEKFSSRA 1159
Query: 52 IARIFHGIPSPNFPAIVFGRN-RYWRSHMDQDFGLLCKLAARELIKL 97
+ARIFHGI SP +PA V+G++ R+WR ++ F L LA EL+++
Sbjct: 1160 VARIFHGIGSPCYPAQVYGQDRRFWRKYLHLSFHALVGLATEELLQV 1206
>sp|Q0WVW7|RQL5_ARATH ATP-dependent DNA helicase Q-like 5 OS=Arabidopsis thaliana
GN=RECQL5 PE=2 SV=2
Length = 911
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 2 LKSKLRRYFQDENDVDATAPEIKLTKEDLLISDIHSLVNSYRDTNFTGRSIARIFHGIPS 61
L+S++ YF + D+ P L +DI + S R FT R+IARI HG+ S
Sbjct: 809 LQSRIFDYFNGDEKCDS--PSKATQNCAFLRADIKVFLQSNRQAKFTPRAIARIMHGVGS 866
Query: 62 PNFPAIVFGRNRYWRSHMDQDFGLLCKLAAREL 94
P FP V+ + +W +M+ DF ++ + A EL
Sbjct: 867 PAFPNSVWSKTHFWGRYMNVDFRVIMEAAQTEL 899
>sp|A8LQQ9|TIG_DINSH Trigger factor OS=Dinoroseobacter shibae (strain DFL 12) GN=tig
PE=3 SV=1
Length = 442
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 6 LRRYFQDENDVDATAPEIKLTKEDLLISDIHSLVNSYR------DTNFTGRSIARI 55
+ ++F+D D A PEIK+T ED D + SY DT+F+ ++ ++
Sbjct: 75 MAKHFEDSGDRPALQPEIKMTNEDWKEGDDIEVAMSYEALPEVPDTDFSTVTLEKL 130
>sp|Q7M8G1|SURE_WOLSU 5'-nucleotidase SurE OS=Wolinella succinogenes (strain ATCC 29543 /
DSM 1740 / LMG 7466 / NCTC 11488 / FDC 602W) GN=surE
PE=3 SV=1
Length = 259
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 9/72 (12%)
Query: 26 TKEDLLISDIHSLVNSYRDTNFTGRS---IARIFHGIPSPNFPAIVFGRNRYWRSHMDQD 82
+K DL+IS I+ N D ++G + + + HGIPS F ++ +N + D
Sbjct: 86 SKPDLIISGINLGSNMGEDITYSGTASGAMEGVIHGIPSVAFSQLLHDKNTF-----GFD 140
Query: 83 FGLLCKLAAREL 94
F L K REL
Sbjct: 141 FA-LAKKVVREL 151
>sp|Q5LR43|TIG_RUEPO Trigger factor OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171
/ DSS-3) GN=tig PE=3 SV=1
Length = 443
Score = 29.6 bits (65), Expect = 6.1, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 6 LRRYFQDENDVDATAPEIKLTKEDLLISDIHSLVNSY 42
+ ++F+D D A PE+K+T ED D + SY
Sbjct: 75 MNKHFEDSGDRPALQPEVKMTNEDWKEGDDVEVAMSY 111
>sp|Q5REL3|RN146_PONAB E3 ubiquitin-protein ligase RNF146 OS=Pongo abelii GN=RNF146 PE=2
SV=1
Length = 358
Score = 29.6 bits (65), Expect = 6.4, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 12 DENDVDATAPEIKLTKEDLLISDIHSLVNSYRDTNFTGRSIA 53
D DV A + LT++ LL+S+ + V D + T RS+A
Sbjct: 294 DSEDVSAVVAQHSLTQQRLLVSNANQTVPDRSDRSGTDRSVA 335
>sp|Q9NTX7|RN146_HUMAN E3 ubiquitin-protein ligase RNF146 OS=Homo sapiens GN=RNF146 PE=1
SV=1
Length = 359
Score = 29.3 bits (64), Expect = 6.9, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 12 DENDVDATAPEIKLTKEDLLISDIHSLVNSYRDTNFTGRSIA 53
D DV A + LT++ LL+S+ + V D + T RS+A
Sbjct: 295 DSEDVSAVVAQHSLTQQRLLVSNANQTVPDRSDRSGTDRSVA 336
>sp|P40024|ARB1_YEAST ABC transporter ATP-binding protein ARB1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=ARB1 PE=1
SV=1
Length = 610
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 10/55 (18%)
Query: 12 DENDVDATAPEIKLTK--------EDLLISDIHSLVNSYRDTNFTGRSIARIFHG 58
+E++VDA A EIK+ K D +++ + S + + RD + S++ +FHG
Sbjct: 41 EESEVDAAAREIKMMKLQQDKDGLSDRVVTGVLSSLETSRDIKLS--SVSLLFHG 93
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.140 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,917,594
Number of Sequences: 539616
Number of extensions: 1465098
Number of successful extensions: 3811
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 3801
Number of HSP's gapped (non-prelim): 11
length of query: 98
length of database: 191,569,459
effective HSP length: 67
effective length of query: 31
effective length of database: 155,415,187
effective search space: 4817870797
effective search space used: 4817870797
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)