Query psy4188
Match_columns 98
No_of_seqs 78 out of 80
Neff 4.4
Searched_HMMs 46136
Date Fri Aug 16 19:05:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4188.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4188hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0351|consensus 97.8 1.6E-06 3.6E-11 78.1 -2.9 69 27-95 869-937 (941)
2 PF11625 DUF3253: Protein of u 77.0 6.9 0.00015 26.4 4.6 30 27-56 4-34 (83)
3 PF10788 DUF2603: Protein of u 65.4 5.5 0.00012 29.2 2.3 22 77-98 86-107 (137)
4 KOG1301|consensus 57.6 7.1 0.00015 34.7 1.9 28 71-98 302-329 (621)
5 PHA01631 hypothetical protein 50.6 4.8 0.0001 30.8 -0.2 22 56-77 93-116 (176)
6 PF08025 Antimicrobial_3: Spid 50.0 8.2 0.00018 22.5 0.8 12 50-61 11-22 (37)
7 PF13592 HTH_33: Winged helix- 46.9 27 0.00059 21.1 2.8 28 33-60 8-35 (60)
8 PF12775 AAA_7: P-loop contain 46.6 10 0.00023 29.5 1.1 15 45-59 237-251 (272)
9 PRK14052 effector protein; Pro 42.5 12 0.00025 31.6 0.9 30 27-60 32-61 (387)
10 COG4806 RhaA L-rhamnose isomer 41.1 68 0.0015 27.1 5.1 72 4-78 166-248 (419)
11 PF14774 FAM177: FAM177 family 40.5 31 0.00068 24.6 2.7 42 24-66 59-101 (123)
12 PF13490 zf-HC2: Putative zinc 39.8 29 0.00064 18.6 2.0 25 33-57 2-26 (36)
13 PF13565 HTH_32: Homeodomain-l 38.6 90 0.0019 18.8 6.8 31 28-60 32-65 (77)
14 PF05687 DUF822: Plant protein 37.5 16 0.00034 27.4 0.8 10 50-59 23-33 (150)
15 PF12976 DUF3860: Domain of Un 35.6 71 0.0015 21.9 3.7 27 58-84 61-87 (92)
16 smart00042 CUB Domain first fo 34.3 15 0.00032 22.8 0.2 12 59-71 3-14 (102)
17 COG5414 TATA-binding protein-a 33.4 44 0.00096 28.1 2.9 54 29-86 142-205 (392)
18 COG1052 LdhA Lactate dehydroge 32.4 26 0.00055 28.4 1.3 38 49-88 158-199 (324)
19 PF12872 OST-HTH: OST-HTH/LOTU 31.3 68 0.0015 19.3 2.9 43 29-72 4-48 (74)
20 PF04737 Lant_dehyd_N: Lantibi 30.9 20 0.00042 23.4 0.4 60 28-92 30-94 (97)
21 KOG3302|consensus 27.2 26 0.00057 27.3 0.6 20 45-67 90-109 (200)
22 PF14701 hDGE_amylase: glucano 26.5 29 0.00064 29.5 0.8 11 49-59 386-396 (423)
23 PRK10219 DNA-binding transcrip 26.4 1.2E+02 0.0027 19.5 3.6 52 29-88 4-55 (107)
24 cd05061 PTKc_InsR Catalytic do 25.0 75 0.0016 23.2 2.6 41 29-69 248-288 (288)
25 cd00041 CUB CUB domain; extrac 24.7 26 0.00057 21.7 0.1 11 59-69 13-23 (113)
26 PF14528 LAGLIDADG_3: LAGLIDAD 24.5 48 0.001 20.2 1.3 38 4-41 2-43 (77)
27 KOG0919|consensus 24.3 86 0.0019 26.0 3.0 48 33-81 277-326 (338)
28 KOG1475|consensus 24.1 17 0.00036 30.5 -1.1 35 47-84 67-119 (363)
29 KOG0498|consensus 23.7 51 0.0011 30.0 1.8 41 2-42 377-419 (727)
30 cd07377 WHTH_GntR Winged helix 22.7 1.6E+02 0.0034 16.6 3.4 31 29-60 4-38 (66)
31 PF00431 CUB: CUB domain CUB d 22.3 27 0.00059 21.6 -0.1 9 59-67 12-20 (110)
32 PF00392 GntR: Bacterial regul 22.0 1.9E+02 0.004 17.1 3.6 28 29-56 3-34 (64)
33 KOG3764|consensus 21.3 38 0.00083 29.4 0.5 17 48-64 160-176 (464)
34 cd01666 TGS_DRG_C TGS_DRG_C: 21.0 25 0.00055 22.8 -0.5 35 48-82 26-62 (75)
35 PF10026 DUF2268: Predicted Zn 20.7 2.3E+02 0.0051 20.7 4.5 89 6-96 100-195 (195)
36 PF03374 ANT: Phage antirepres 20.2 91 0.002 20.4 2.1 19 44-63 22-40 (111)
No 1
>KOG0351|consensus
Probab=97.79 E-value=1.6e-06 Score=78.07 Aligned_cols=69 Identities=25% Similarity=0.233 Sum_probs=63.8
Q ss_pred hHHHHHHHHHHHHhhccCCCchHHHHHHHHhcCCCCCCchHhhccchhhhhcccCCHHHHHHHHHHHHH
Q psy4188 27 KEDLLISDIHSLVNSYRDTNFTGRSIARIFHGIPSPNFPAIVFGRNRYWRSHMDQDFGLLCKLAARELI 95 (98)
Q Consensus 27 ~e~~ir~dIr~ll~~~~~~~ftgRaVARIfHGI~SP~yPa~~W~r~~fWr~~~~~dF~~i~~~At~Ell 95 (98)
+....+.+++..+.++++..+.||++++|+|++.||+||+..|+.+++|..+...+|+.++.++.+++.
T Consensus 869 l~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 937 (941)
T KOG0351|consen 869 LSDGVRGVVRIGIVTRDKDKFGGRAIRRIFQVIYSSRVQAVEKGVDRTLIQAQLERFNRAKKLNSESLQ 937 (941)
T ss_pred cCCCceecccCCCcccccccccchhheeechhcccchhhHHHhccccHHHHhhhccccccccccchhhc
Confidence 456677788889999999999999999999999999999999999999999999999999999988864
No 2
>PF11625 DUF3253: Protein of unknown function (DUF3253); InterPro: IPR021660 This bacterial family of proteins has no known function. ; PDB: 2NS0_A.
Probab=77.04 E-value=6.9 Score=26.44 Aligned_cols=30 Identities=17% Similarity=0.228 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHhhcc-CCCchHHHHHHHH
Q psy4188 27 KEDLLISDIHSLVNSYR-DTNFTGRSIARIF 56 (98)
Q Consensus 27 ~e~~ir~dIr~ll~~~~-~~~ftgRaVARIf 56 (98)
..+.|...|..||..+. +..+.+-.|||-+
T Consensus 4 ~~~~l~~~Il~ll~~R~~~ktiCPSevARal 34 (83)
T PF11625_consen 4 SDARLEAAILALLAARGPGKTICPSEVARAL 34 (83)
T ss_dssp -HHHHHHHHHHHHHHS-TT--B-HHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCCCCccCHHHHHHHH
Confidence 46889999999999885 6789999999999
No 3
>PF10788 DUF2603: Protein of unknown function (DUF2603); InterPro: IPR019724 This entry represents a conserved protein in epsilon-Proteobacteria. The function is not known.
Probab=65.43 E-value=5.5 Score=29.22 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=19.0
Q ss_pred hcccCCHHHHHHHHHHHHHhcC
Q psy4188 77 SHMDQDFGLLCKLAARELIKLR 98 (98)
Q Consensus 77 ~~~~~dF~~i~~~At~Ell~~r 98 (98)
.++.+||+.++.+|-+||=++|
T Consensus 86 q~~PIDF~Dvw~VAm~ei~~~~ 107 (137)
T PF10788_consen 86 QQMPIDFEDVWAVAMDEIKKMR 107 (137)
T ss_pred HhCCCcHHHHHHHHHHHHHHHH
Confidence 4788999999999999997653
No 4
>KOG1301|consensus
Probab=57.59 E-value=7.1 Score=34.75 Aligned_cols=28 Identities=18% Similarity=0.474 Sum_probs=25.5
Q ss_pred cchhhhhcccCCHHHHHHHHHHHHHhcC
Q psy4188 71 RNRYWRSHMDQDFGLLCKLAARELIKLR 98 (98)
Q Consensus 71 r~~fWr~~~~~dF~~i~~~At~Ell~~r 98 (98)
.+.||++|.+..|+.+.+.-++||..+|
T Consensus 302 ~D~fW~~n~~~pFP~VAE~Ve~eL~~Yk 329 (621)
T KOG1301|consen 302 NDKFWRRNKGSPFPEVAENVEEELESYK 329 (621)
T ss_pred ccHHHHhcCCCCCchHHHHHHHHHHHHH
Confidence 5699999999999999999999998764
No 5
>PHA01631 hypothetical protein
Probab=50.61 E-value=4.8 Score=30.77 Aligned_cols=22 Identities=18% Similarity=0.001 Sum_probs=17.0
Q ss_pred HhcCCCCCCchHhhccc--hhhhh
Q psy4188 56 FHGIPSPNFPAIVFGRN--RYWRS 77 (98)
Q Consensus 56 fHGI~SP~yPa~~W~r~--~fWr~ 77 (98)
.-|+.||||||-.|+.. .-|=.
T Consensus 93 ~~~v~t~CiPA~~kp~~~v~~FC~ 116 (176)
T PHA01631 93 NERVFTPCYWLYYDWANEIRPFCS 116 (176)
T ss_pred CCCccceeeeeeecCCCcEEEEEc
Confidence 34899999999999887 44433
No 6
>PF08025 Antimicrobial_3: Spider antimicrobial peptide; InterPro: IPR012522 This family includes antimicrobial peptides isolated from the crude venom of the wolf spider Oxyopes kitabensis (Wolf spider). These peptides, known as oxyopinins, are the largest linear cationic amphipathic peptides chemically characterised and exhibit disrupting activities towards biological membranes [].; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0005576 extracellular region
Probab=50.04 E-value=8.2 Score=22.46 Aligned_cols=12 Identities=50% Similarity=0.911 Sum_probs=10.5
Q ss_pred HHHHHHHhcCCC
Q psy4188 50 RSIARIFHGIPS 61 (98)
Q Consensus 50 RaVARIfHGI~S 61 (98)
|+||++|-|+|-
T Consensus 11 rsiak~fkgvgk 22 (37)
T PF08025_consen 11 RSIAKFFKGVGK 22 (37)
T ss_pred HHHHHHHHHHHH
Confidence 899999999873
No 7
>PF13592 HTH_33: Winged helix-turn helix
Probab=46.88 E-value=27 Score=21.10 Aligned_cols=28 Identities=7% Similarity=0.272 Sum_probs=25.2
Q ss_pred HHHHHHHhhccCCCchHHHHHHHHhcCC
Q psy4188 33 SDIHSLVNSYRDTNFTGRSIARIFHGIP 60 (98)
Q Consensus 33 ~dIr~ll~~~~~~~ftgRaVARIfHGI~ 60 (98)
.+|..+|...=+.++|.+.|.|+||=+|
T Consensus 8 ~~i~~~I~~~fgv~ys~~~v~~lL~r~G 35 (60)
T PF13592_consen 8 KEIAAYIEEEFGVKYSPSGVYRLLKRLG 35 (60)
T ss_pred HHHHHHHHHHHCCEEcHHHHHHHHHHcC
Confidence 5788999988899999999999999776
No 8
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=46.60 E-value=10 Score=29.49 Aligned_cols=15 Identities=40% Similarity=0.831 Sum_probs=13.9
Q ss_pred CCchHHHHHHHHhcC
Q psy4188 45 TNFTGRSIARIFHGI 59 (98)
Q Consensus 45 ~~ftgRaVARIfHGI 59 (98)
-.||.|.|+|||+||
T Consensus 237 Y~FnlRDlsrv~qGi 251 (272)
T PF12775_consen 237 YTFNLRDLSRVFQGI 251 (272)
T ss_dssp TTSHHHHHHHHHHHH
T ss_pred eeccHHHHHHHHHHH
Confidence 479999999999998
No 9
>PRK14052 effector protein; Provisional
Probab=42.53 E-value=12 Score=31.63 Aligned_cols=30 Identities=23% Similarity=0.345 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHhhccCCCchHHHHHHHHhcCC
Q psy4188 27 KEDLLISDIHSLVNSYRDTNFTGRSIARIFHGIP 60 (98)
Q Consensus 27 ~e~~ir~dIr~ll~~~~~~~ftgRaVARIfHGI~ 60 (98)
.|-.|-+|..+|++++| |.-+|||.|-|+|
T Consensus 32 ~ey~i~a~~q~~~r~~p----~~~~~arffe~~~ 61 (387)
T PRK14052 32 KEYHINADTQQFTRTNP----TSSAVARFFEATG 61 (387)
T ss_pred eeeeechHHHHHHhcCC----CchHHHHHHHHHH
Confidence 46678889999999998 5689999999985
No 10
>COG4806 RhaA L-rhamnose isomerase [Carbohydrate transport and metabolism]
Probab=41.12 E-value=68 Score=27.09 Aligned_cols=72 Identities=14% Similarity=0.337 Sum_probs=51.5
Q ss_pred HHHHHhhcccCCC----------C-CCcccccCChHHHHHHHHHHHHhhccCCCchHHHHHHHHhcCCCCCCchHhhccc
Q psy4188 4 SKLRRYFQDENDV----------D-ATAPEIKLTKEDLLISDIHSLVNSYRDTNFTGRSIARIFHGIPSPNFPAIVFGRN 72 (98)
Q Consensus 4 ~~i~~YF~~e~~~----------~-~~~~~~~l~~e~~ir~dIr~ll~~~~~~~ftgRaVARIfHGI~SP~yPa~~W~r~ 72 (98)
.+|.+||.++-.. + ...|-.+++....|....-..++.--+...+--||--=+.||||-.|-. |++
T Consensus 166 Rri~eYFGkeLgtp~~~NiWiPDG~KD~P~DRltPRkRL~eaLDev~sekl~~~~~~davESKLFGiGaEsY~V---GS~ 242 (419)
T COG4806 166 RRVSAYFGEQLGTPSVMNIWIPDGMKDIPVDRLAPRQRLLEALDEVISEKLDPAHHIDAVESKLFGIGAESYTV---GSN 242 (419)
T ss_pred HHHHHHHHhhhCCCceeeeecCCCcccCcccccChHHHHHHHHHHHHHHhcChhhhhHHHHHHhhccccceeee---ccc
Confidence 4689999887421 1 1123345666677777777788877788899999999999999999853 556
Q ss_pred hhhhhc
Q psy4188 73 RYWRSH 78 (98)
Q Consensus 73 ~fWr~~ 78 (98)
.|.-.|
T Consensus 243 EFYm~Y 248 (419)
T COG4806 243 EFYMGY 248 (419)
T ss_pred ceeehh
Confidence 554433
No 11
>PF14774 FAM177: FAM177 family
Probab=40.46 E-value=31 Score=24.64 Aligned_cols=42 Identities=29% Similarity=0.390 Sum_probs=28.9
Q ss_pred cCChHHHHHH-HHHHHHhhccCCCchHHHHHHHHhcCCCCCCch
Q psy4188 24 KLTKEDLLIS-DIHSLVNSYRDTNFTGRSIARIFHGIPSPNFPA 66 (98)
Q Consensus 24 ~l~~e~~ir~-dIr~ll~~~~~~~ftgRaVARIfHGI~SP~yPa 66 (98)
.|+|-+-++. -++.--.....+-|-|--+|.+| ||.+|.|--
T Consensus 59 ~l~w~~~~~~~~~~~~~~~l~~~d~~Ge~lA~~f-Git~~KYqy 101 (123)
T PF14774_consen 59 KLTWGPWLWFWAWRVGTKSLSGCDYLGEKLASFF-GITSPKYQY 101 (123)
T ss_pred cCCcHHHHHHHHHHHHHhHhhHHhhhhhHHHHHh-CCCchHHHH
Confidence 3456666654 44444445556778899999876 999999853
No 12
>PF13490 zf-HC2: Putative zinc-finger; PDB: 2Z2S_F 2Q1Z_B 3HUG_T.
Probab=39.76 E-value=29 Score=18.59 Aligned_cols=25 Identities=20% Similarity=0.401 Sum_probs=17.2
Q ss_pred HHHHHHHhhccCCCchHHHHHHHHh
Q psy4188 33 SDIHSLVNSYRDTNFTGRSIARIFH 57 (98)
Q Consensus 33 ~dIr~ll~~~~~~~ftgRaVARIfH 57 (98)
.+++.+|..|-++.+|+..-++|=+
T Consensus 2 ~~~~~~l~~y~dg~L~~~~~~~~~~ 26 (36)
T PF13490_consen 2 EEVRELLSAYLDGELSPEERARLEA 26 (36)
T ss_dssp ---HHHHHHHHCT-S-HHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4788899999999999998888754
No 13
>PF13565 HTH_32: Homeodomain-like domain
Probab=38.60 E-value=90 Score=18.82 Aligned_cols=31 Identities=26% Similarity=0.349 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhhccCCCchHHHHHHHHh---cCC
Q psy4188 28 EDLLISDIHSLVNSYRDTNFTGRSIARIFH---GIP 60 (98)
Q Consensus 28 e~~ir~dIr~ll~~~~~~~ftgRaVARIfH---GI~ 60 (98)
.+.++..|..++..++ .||++.||..+. |++
T Consensus 32 ~~e~~~~i~~~~~~~p--~wt~~~i~~~L~~~~g~~ 65 (77)
T PF13565_consen 32 DPEQRERIIALIEEHP--RWTPREIAEYLEEEFGIS 65 (77)
T ss_pred cHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHhCCC
Confidence 5667789999999888 799999999986 765
No 14
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=37.47 E-value=16 Score=27.37 Aligned_cols=10 Identities=60% Similarity=1.149 Sum_probs=8.4
Q ss_pred HHH-HHHHhcC
Q psy4188 50 RSI-ARIFHGI 59 (98)
Q Consensus 50 RaV-ARIfHGI 59 (98)
||| ||||+|+
T Consensus 23 RAIaakIfaGL 33 (150)
T PF05687_consen 23 RAIAAKIFAGL 33 (150)
T ss_pred HHHHHHHHHHH
Confidence 676 6999998
No 15
>PF12976 DUF3860: Domain of Unknown Function with PDB structure (DUF3860); InterPro: IPR024619 This protein family includes hypothetical protein (JCVI_PEP_1096688149193) whose crystal structure has been solved PDB:2OD5. The hypothetical protein is from an environmental metagenome (unidentified marine microbe).
Probab=35.58 E-value=71 Score=21.94 Aligned_cols=27 Identities=15% Similarity=0.406 Sum_probs=21.4
Q ss_pred cCCCCCCchHhhccchhhhhcccCCHH
Q psy4188 58 GIPSPNFPAIVFGRNRYWRSHMDQDFG 84 (98)
Q Consensus 58 GI~SP~yPa~~W~r~~fWr~~~~~dF~ 84 (98)
|.-|-.||-.+|..+..=|+|...-|+
T Consensus 61 G~~~~~~~I~~W~~~~~~R~~~~~~~~ 87 (92)
T PF12976_consen 61 GMRLTDLPISEWASSSWVRRHERARYN 87 (92)
T ss_pred cccccccceeeeechHHHhhccccccc
Confidence 666788999999988877887765554
No 16
>smart00042 CUB Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein. This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Probab=34.33 E-value=15 Score=22.79 Aligned_cols=12 Identities=42% Similarity=0.894 Sum_probs=9.1
Q ss_pred CCCCCCchHhhcc
Q psy4188 59 IPSPNFPAIVFGR 71 (98)
Q Consensus 59 I~SP~yPa~~W~r 71 (98)
|.||.||.. +..
T Consensus 3 i~Sp~yP~~-y~~ 14 (102)
T smart00042 3 ITSPNYPQS-YPN 14 (102)
T ss_pred EeCCCCCcC-CCC
Confidence 689999995 433
No 17
>COG5414 TATA-binding protein-associated factor [Transcription]
Probab=33.40 E-value=44 Score=28.09 Aligned_cols=54 Identities=17% Similarity=0.444 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHh----hccCCCchHHHHHHH-----HhcCCCCCCchHhhccc-hhhhhcccCCHHHH
Q psy4188 29 DLLISDIHSLVN----SYRDTNFTGRSIARI-----FHGIPSPNFPAIVFGRN-RYWRSHMDQDFGLL 86 (98)
Q Consensus 29 ~~ir~dIr~ll~----~~~~~~ftgRaVARI-----fHGI~SP~yPa~~W~r~-~fWr~~~~~dF~~i 86 (98)
-.=.+||.++|- .++++.|--.-+-.+ .|||+.|-| |-|. ||=++-.+.--..|
T Consensus 142 ~~K~aDisqmlvA~E~v~hensflN~~lk~~~~y~y~hGlspPl~----~Vr~rRFRkk~s~~eIe~V 205 (392)
T COG5414 142 HYKVADISQMLVALEAVYHENSFLNKHLKKEREYYYLHGLSPPLK----YVRARRFRKKSSKIEIEEV 205 (392)
T ss_pred hHhHhhHHHHHHHHhhhcccchhhHHHHHHHhhhhccccCCchhH----HHHHHHHHhhcCcchHHHH
Confidence 345679998887 788888876666666 899999876 7777 77777666554444
No 18
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=32.44 E-value=26 Score=28.36 Aligned_cols=38 Identities=16% Similarity=0.092 Sum_probs=24.0
Q ss_pred HHHHHHHHhcCCCCCCchHhhc----cchhhhhcccCCHHHHHH
Q psy4188 49 GRSIARIFHGIPSPNFPAIVFG----RNRYWRSHMDQDFGLLCK 88 (98)
Q Consensus 49 gRaVARIfHGI~SP~yPa~~W~----r~~fWr~~~~~dF~~i~~ 88 (98)
|++|||+++|.|-+-+...--+ ....+.+|.. |..+++
T Consensus 158 G~avA~r~~~Fgm~v~y~~~~~~~~~~~~~~~~y~~--l~ell~ 199 (324)
T COG1052 158 GQAVARRLKGFGMKVLYYDRSPNPEAEKELGARYVD--LDELLA 199 (324)
T ss_pred HHHHHHHHhcCCCEEEEECCCCChHHHhhcCceecc--HHHHHH
Confidence 7899999999998854433322 2234444444 666654
No 19
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=31.31 E-value=68 Score=19.28 Aligned_cols=43 Identities=14% Similarity=0.211 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhhccCC--CchHHHHHHHHhcCCCCCCchHhhccc
Q psy4188 29 DLLISDIHSLVNSYRDT--NFTGRSIARIFHGIPSPNFPAIVFGRN 72 (98)
Q Consensus 29 ~~ir~dIr~ll~~~~~~--~ftgRaVARIfHGI~SP~yPa~~W~r~ 72 (98)
+.+...|+.+|.+.+++ ..+.-.+...+.-.- |.|+...+|-+
T Consensus 4 ~~~~~~l~~ll~~~~~~~g~v~ls~l~~~~~~~~-~~f~~~~yG~~ 48 (74)
T PF12872_consen 4 EELKKLLRELLESQKGEDGWVSLSQLGQEYKKKY-PDFDPRDYGFS 48 (74)
T ss_dssp HHHHHHHHHHHHHTCTTTSSEEHHHHHHHHHHHH-TT--TCCTTSS
T ss_pred HHHHHHHHHHHHhCcCCCceEEHHHHHHHHHHHC-CCCCccccCCC
Confidence 57888999999666653 688888888888888 99998887754
No 20
>PF04737 Lant_dehyd_N: Lantibiotic dehydratase, N terminus; InterPro: IPR006826 Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides []. They are produced by bacteria of the Firmicutes phylum, and include mutacin, subtilin, and nisin. Lantibiotic peptides contain thioether bridges termed lanthionines that are thought to be generated by dehydration of serine and threonine residues followed by addition of cysteine residues []. This family constitutes the N terminus of the enzyme proposed to catalyse the dehydration step [, ].
Probab=30.92 E-value=20 Score=23.36 Aligned_cols=60 Identities=17% Similarity=0.175 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhhcc-----CCCchHHHHHHHHhcCCCCCCchHhhccchhhhhcccCCHHHHHHHHHH
Q psy4188 28 EDLLISDIHSLVNSYR-----DTNFTGRSIARIFHGIPSPNFPAIVFGRNRYWRSHMDQDFGLLCKLAAR 92 (98)
Q Consensus 28 e~~ir~dIr~ll~~~~-----~~~ftgRaVARIfHGI~SP~yPa~~W~r~~fWr~~~~~dF~~i~~~At~ 92 (98)
..++..-+-..+.... -.-|+|-+++++ ++.=....|+.....+++..+|+.-|.++|.+
T Consensus 30 ~r~~~~sl~~Yl~R~~~R~tPfGlFa~v~~g~~-----~~~~~~~~~~~~~~~~~~~r~d~~~l~~l~~~ 94 (97)
T PF04737_consen 30 DRRLERSLYKYLQRMCTRNTPFGLFAGVGYGRF-----GDQPSLVRIGDSHLSRRRVRLDMWWLYALARQ 94 (97)
T ss_pred HHHHHHHHHHHHHHHccCCCCccccccceeeEe-----cCCCcccccCCCccceEEEEeCHHHHHHHHHH
Confidence 3445555555555444 235777777777 33334447888888999999999999999864
No 21
>KOG3302|consensus
Probab=27.23 E-value=26 Score=27.28 Aligned_cols=20 Identities=30% Similarity=0.585 Sum_probs=16.9
Q ss_pred CCchHHHHHHHHhcCCCCCCchH
Q psy4188 45 TNFTGRSIARIFHGIPSPNFPAI 67 (98)
Q Consensus 45 ~~ftgRaVARIfHGI~SP~yPa~ 67 (98)
.++-+|-+|||+|-+| ||+.
T Consensus 90 ar~aark~aRilqkLg---f~~~ 109 (200)
T KOG3302|consen 90 ARLAARKYARILQKLG---FPVK 109 (200)
T ss_pred HHHHHHHHHHHHHHcC---CCce
Confidence 4678999999999999 7764
No 22
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=26.46 E-value=29 Score=29.54 Aligned_cols=11 Identities=45% Similarity=0.890 Sum_probs=9.1
Q ss_pred HHHHHHHHhcC
Q psy4188 49 GRSIARIFHGI 59 (98)
Q Consensus 49 gRaVARIfHGI 59 (98)
.+-+||||||+
T Consensus 386 t~~~A~iF~G~ 396 (423)
T PF14701_consen 386 TELMAKIFHGF 396 (423)
T ss_pred HHHHHHhcCee
Confidence 46789999997
No 23
>PRK10219 DNA-binding transcriptional regulator SoxS; Provisional
Probab=26.44 E-value=1.2e+02 Score=19.47 Aligned_cols=52 Identities=13% Similarity=0.195 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhhccCCCchHHHHHHHHhcCCCCCCchHhhccchhhhhcccCCHHHHHH
Q psy4188 29 DLLISDIHSLVNSYRDTNFTGRSIARIFHGIPSPNFPAIVFGRNRYWRSHMDQDFGLLCK 88 (98)
Q Consensus 29 ~~ir~dIr~ll~~~~~~~ftgRaVARIfHGI~SP~yPa~~W~r~~fWr~~~~~dF~~i~~ 88 (98)
+.+...+..+|..+....+|-..+|+.++ ++ |.+= ++..+++.+..|...+.
T Consensus 4 ~~~~~~~~~~i~~~~~~~~~~~~lA~~~~-~S-~~~l------~r~f~~~~g~s~~~~i~ 55 (107)
T PRK10219 4 QKIIQTLIAWIDEHIDQPLNIDVVAKKSG-YS-KWYL------QRMFRTVTHQTLGDYIR 55 (107)
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHC-CC-HHHH------HHHHHHHHCcCHHHHHH
Confidence 34667788999999888889999998874 22 2111 25566677777776554
No 24
>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor. Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta
Probab=25.04 E-value=75 Score=23.15 Aligned_cols=41 Identities=15% Similarity=0.156 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhhccCCCchHHHHHHHHhcCCCCCCchHhh
Q psy4188 29 DLLISDIHSLVNSYRDTNFTGRSIARIFHGIPSPNFPAIVF 69 (98)
Q Consensus 29 ~~ir~dIr~ll~~~~~~~ftgRaVARIfHGI~SP~yPa~~W 69 (98)
..+..=|+..|+..++.+.|...+.+.|.-.-.|-|+...|
T Consensus 248 ~~~~~li~~~l~~~p~~Rps~~~ll~~l~~~~~~~~~~~~~ 288 (288)
T cd05061 248 ERVTDLMRMCWQFNPKMRPTFLEIVNLLKDDLHPSFPEVSF 288 (288)
T ss_pred HHHHHHHHHHcCCChhHCcCHHHHHHHHHhhcCCCCCCCCC
Confidence 56777788888889999999999999999999999987766
No 25
>cd00041 CUB CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
Probab=24.73 E-value=26 Score=21.67 Aligned_cols=11 Identities=45% Similarity=0.688 Sum_probs=8.9
Q ss_pred CCCCCCchHhh
Q psy4188 59 IPSPNFPAIVF 69 (98)
Q Consensus 59 I~SP~yPa~~W 69 (98)
|.||.||...-
T Consensus 13 i~Sp~~p~~~~ 23 (113)
T cd00041 13 ISSPNYPNNYP 23 (113)
T ss_pred EECCCCCCCCC
Confidence 78999998644
No 26
>PF14528 LAGLIDADG_3: LAGLIDADG-like domain; PDB: 2CW7_A 2CW8_A 2VS8_F 2VS7_G 1B24_A 1DQ3_A 2DCH_X.
Probab=24.45 E-value=48 Score=20.21 Aligned_cols=38 Identities=24% Similarity=0.424 Sum_probs=25.2
Q ss_pred HHHHHhhcccCCCCCCcc---cccC-ChHHHHHHHHHHHHhh
Q psy4188 4 SKLRRYFQDENDVDATAP---EIKL-TKEDLLISDIHSLVNS 41 (98)
Q Consensus 4 ~~i~~YF~~e~~~~~~~~---~~~l-~~e~~ir~dIr~ll~~ 41 (98)
.-|+-||+.|..-..... ...+ +.+..+..||+.+|..
T Consensus 2 afL~Glfd~DG~v~~~~~~~~~i~~~~~s~~ll~~v~~lL~~ 43 (77)
T PF14528_consen 2 AFLRGLFDGDGSVSKNRRKSVRISISSKSKELLEDVQKLLLR 43 (77)
T ss_dssp HHHHHHHHHHEEEECCSECEEEEEEEES-HHHHHHHHHHHHH
T ss_pred HHHHHHhcCCccEECCCCcEEEEEEEECCHHHHHHHHHHHHH
Confidence 457889998874443321 2344 4567899999999975
No 27
>KOG0919|consensus
Probab=24.34 E-value=86 Score=25.98 Aligned_cols=48 Identities=19% Similarity=0.227 Sum_probs=30.2
Q ss_pred HHHHHHHhhccCCCchHHHHHHHHhcCCCCCCchHhhccc--hhhhhcccC
Q psy4188 33 SDIHSLVNSYRDTNFTGRSIARIFHGIPSPNFPAIVFGRN--RYWRSHMDQ 81 (98)
Q Consensus 33 ~dIr~ll~~~~~~~ftgRaVARIfHGI~SP~yPa~~W~r~--~fWr~~~~~ 81 (98)
.-++.++...- +-||+|.|||.+-==.+=-||..+=.++ |.-|.-+||
T Consensus 277 ~~~~~l~~l~L-RYFTprEvArLmgFPe~fefp~~~T~kq~YRLLGNSiNV 326 (338)
T KOG0919|consen 277 QRLDLLHQLRL-RYFTPREVARLMGFPENFEFPPETTNKQKYRLLGNSINV 326 (338)
T ss_pred HHHHHHHHHHh-hccCHHHHHHHcCCCcccCCCcchhHHHHHHHhcCcccc
Confidence 33444444444 4699999999875444556777777777 444544444
No 28
>KOG1475|consensus
Probab=24.09 E-value=17 Score=30.45 Aligned_cols=35 Identities=29% Similarity=0.441 Sum_probs=21.0
Q ss_pred chHHHHHHHHh--cCCC----------------CCCchHhhccchhhhhcccCCHH
Q psy4188 47 FTGRSIARIFH--GIPS----------------PNFPAIVFGRNRYWRSHMDQDFG 84 (98)
Q Consensus 47 ftgRaVARIfH--GI~S----------------P~yPa~~W~r~~fWr~~~~~dF~ 84 (98)
=||||||||=- |=|+ =.-|..+|+| |-+-.+.+=.
T Consensus 67 GTGRAvaRiPRV~GGGT~RsGQgAFgNmCR~GrMfaPtKt~Rr---W~rkVn~n~K 119 (363)
T KOG1475|consen 67 GTGRAVARIPRVGGGGTHRSGQGAFGNMCRGGRMFAPTKTWRR---WHRKVNENEK 119 (363)
T ss_pred ccccceecccccCCCCcccccchhhhhhcccccccCchhhHHH---Hhhhhhhhhh
Confidence 48999999931 1111 1237888865 6665555543
No 29
>KOG0498|consensus
Probab=23.72 E-value=51 Score=29.99 Aligned_cols=41 Identities=24% Similarity=0.154 Sum_probs=25.0
Q ss_pred hHHHHHHhhcccCCCCCC-cccccC-ChHHHHHHHHHHHHhhc
Q psy4188 2 LKSKLRRYFQDENDVDAT-APEIKL-TKEDLLISDIHSLVNSY 42 (98)
Q Consensus 2 Lk~~i~~YF~~e~~~~~~-~~~~~l-~~e~~ir~dIr~ll~~~ 42 (98)
||+.+++||+-....... .++.-+ +--+.||+||+..|+.-
T Consensus 377 LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~~ 419 (727)
T KOG0498|consen 377 LRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCLD 419 (727)
T ss_pred HHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhHH
Confidence 799999999855322111 111122 22378999999888643
No 30
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=22.74 E-value=1.6e+02 Score=16.60 Aligned_cols=31 Identities=13% Similarity=0.295 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhhc---cCCCc-hHHHHHHHHhcCC
Q psy4188 29 DLLISDIHSLVNSY---RDTNF-TGRSIARIFHGIP 60 (98)
Q Consensus 29 ~~ir~dIr~ll~~~---~~~~f-tgRaVARIfHGI~ 60 (98)
.++..+|+..|... ++..+ |-+.+|+.| ||+
T Consensus 4 ~~~~~~i~~~i~~~~~~~~~~~~~~~~la~~~-~is 38 (66)
T cd07377 4 EQIADQLREAILSGELKPGDRLPSERELAEEL-GVS 38 (66)
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHH-CCC
Confidence 45666677665543 33344 478888887 664
No 31
>PF00431 CUB: CUB domain CUB domain entry Spermadhesins family entry Link to schematic domain picture by Peer Bork. ; InterPro: IPR000859 The CUB domain (for complement C1r/C1s, Uegf, Bmp1) is a structural motif of approximately 110 residues found almost exclusively in extracellular and plasma membrane-associated proteins, many of which are developmentally regulated [, ]. These proteins are involved in a diverse range of functions, including complement activation, developmental patterning, tissue repair, axon guidance and angiogenesis, cell signalling, fertilisation, haemostasis, inflammation, neurotransmission, receptor-mediated endocytosis, and tumour suppression [, ]. Many CUB-containing proteins are peptidases belonging to MEROPS peptidase families M12A (astacin) and S1A (chymotrypsin). Proteins containing a CUB domain include: Mammalian complement subcomponents C1s/C1r, which form the calcium-dependent complex C1, the first component of the classical pathway of the complement system. Cricetidae sp. (Hamster) serine protease Casp, which degrades type I and IV collagen and fibronectin in the presence of calcium. Mammalian complement-activating component of Ra-reactive factor (RARF), a protease that cleaves the C4 component of complement. Vertebrate enteropeptidase (3.4.21.9 from EC), a type II membrane protein of the intestinal brush border, which activates trypsinogen. Vertebrate bone morphogenic protein 1 (BMP-1), a protein which induces cartilage and bone formation and expresses metalloendopeptidase activity. Sea urchin blastula proteins BP10 and SpAN. Caenorhabditis elegans hypothetical proteins F42A10.8 and R151.5. Neuropilin (A5 antigen), a calcium-independent cell adhesion molecule that functions during the formation of certain neuronal circuits. Fibropellins I and III from Strongylocentrotus purpuratus (Purple sea urchin). Mammalian hyaluronate-binding protein TSG-6 (or PS4), a serum and growth factor induced protein. Mammalian spermadhesins. Xenopus laevis embryonic protein UVS.2, which is expressed during dorsoanterior development. Several of the above proteins consist of a catalytic domain together with several CUB domains interspersed by calcium-binding EGF domains. Some CUB domains appear to be involved in oligomerisation and/or recognition of substrates and binding partners. For example, in the complement proteases, the CUB domains mediate dimerisation and binding to collagen-like regions of target proteins (e.g. C1q for C1r/C1s). The structure of CUB domains consists of a beta-sandwich with a jelly-roll fold. Almost all CUB domains contain four conserved cysteines that probably form two disulphide bridges (C1-C2, C3-C4). The CUB1 domains of C1s and Map19 have calcium-binding sites [].; PDB: 1SFP_A 3KQ4_B 2WNO_A 2QQK_A 2QQL_A 2QQO_B 2QQM_A 3POJ_A 3POB_A 3POG_B ....
Probab=22.30 E-value=27 Score=21.56 Aligned_cols=9 Identities=56% Similarity=1.073 Sum_probs=7.0
Q ss_pred CCCCCCchH
Q psy4188 59 IPSPNFPAI 67 (98)
Q Consensus 59 I~SP~yPa~ 67 (98)
|.||+||..
T Consensus 12 i~Sp~yp~~ 20 (110)
T PF00431_consen 12 ISSPNYPSN 20 (110)
T ss_dssp EESTTTTS-
T ss_pred EECCCCCCC
Confidence 689999974
No 32
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=21.99 E-value=1.9e+02 Score=17.15 Aligned_cols=28 Identities=14% Similarity=0.315 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhhcc---CCCc-hHHHHHHHH
Q psy4188 29 DLLISDIHSLVNSYR---DTNF-TGRSIARIF 56 (98)
Q Consensus 29 ~~ir~dIr~ll~~~~---~~~f-tgRaVARIf 56 (98)
++|..+|+..|.... +.++ |-+.+|+.|
T Consensus 3 ~~i~~~l~~~I~~g~~~~g~~lps~~~la~~~ 34 (64)
T PF00392_consen 3 EQIYDQLRQAILSGRLPPGDRLPSERELAERY 34 (64)
T ss_dssp HHHHHHHHHHHHTTSS-TTSBE--HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCEeCCHHHHHHHh
Confidence 577778888887743 5677 888888876
No 33
>KOG3764|consensus
Probab=21.30 E-value=38 Score=29.41 Aligned_cols=17 Identities=24% Similarity=0.167 Sum_probs=13.5
Q ss_pred hHHHHHHHHhcCCCCCC
Q psy4188 48 TGRSIARIFHGIPSPNF 64 (98)
Q Consensus 48 tgRaVARIfHGI~SP~y 64 (98)
.-=-|||+++|+||-|.
T Consensus 160 ~~l~vAR~LQgvgsA~~ 176 (464)
T KOG3764|consen 160 PMLFVARSLQGVGSAFA 176 (464)
T ss_pred HHHHHHHHHhhhhHHHH
Confidence 34568999999999763
No 34
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=20.97 E-value=25 Score=22.77 Aligned_cols=35 Identities=20% Similarity=0.274 Sum_probs=23.1
Q ss_pred hHHHHHHHHhcCCCCCCc-hHhhccc-hhhhhcccCC
Q psy4188 48 TGRSIARIFHGIPSPNFP-AIVFGRN-RYWRSHMDQD 82 (98)
Q Consensus 48 tgRaVARIfHGI~SP~yP-a~~W~r~-~fWr~~~~~d 82 (98)
|...+|.-.|.=--.+|+ |.+||.+ ++|++-...|
T Consensus 26 TV~D~a~~iH~di~~~f~~A~v~g~s~~~~gq~Vgl~ 62 (75)
T cd01666 26 TVEDVCNKIHKDLVKQFKYALVWGSSVKHSPQRVGLD 62 (75)
T ss_pred CHHHHHHHHHHHHHHhCCeeEEeccCCcCCCeECCCC
Confidence 666777766631114455 6889988 7999776655
No 35
>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function.
Probab=20.65 E-value=2.3e+02 Score=20.75 Aligned_cols=89 Identities=20% Similarity=0.202 Sum_probs=52.2
Q ss_pred HHHhhcccCCCCCC-cccccCChHHHHHHHHHHHHhhccCCCchHHHHHHHHhcCCCCCCchHhhcc-----c-hhhhhc
Q psy4188 6 LRRYFQDENDVDAT-APEIKLTKEDLLISDIHSLVNSYRDTNFTGRSIARIFHGIPSPNFPAIVFGR-----N-RYWRSH 78 (98)
Q Consensus 6 i~~YF~~e~~~~~~-~~~~~l~~e~~ir~dIr~ll~~~~~~~ftgRaVARIfHGI~SP~yPa~~W~r-----~-~fWr~~ 78 (98)
+.+||..+.-.+.. .+-..--++++++.-++.++....+.+ .....+++|.|=..-.+|...=.- + +|-.++
T Consensus 100 lAe~f~~~~~g~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~l~G~~~~~~P~~~GY~~GY~iVk~yl~~~ 178 (195)
T PF10026_consen 100 LAEYFAEELYGEEYLGPWVTYYDEEELKELWKEFIKENLDLD-GFYDHSPWLYGDDEGKLPRWLGYALGYRIVKAYLEKH 178 (195)
T ss_pred HHHHHHHHHcCCCCCchhhhcCCHHHHHHHHHHHHHHhcccc-chhhHHHHhcCCCccCCCccchHHHHHHHHHHHHHHC
Confidence 45667655422222 111111235667777777877777655 678899999983322377643211 2 455666
Q ss_pred ccCCHHHHHHHHHHHHHh
Q psy4188 79 MDQDFGLLCKLAARELIK 96 (98)
Q Consensus 79 ~~~dF~~i~~~At~Ell~ 96 (98)
-+ +-..++.+-.+||++
T Consensus 179 ~~-~~~e~~~~~aeeil~ 195 (195)
T PF10026_consen 179 GD-SIEELTNLPAEEILK 195 (195)
T ss_pred CC-CHHHHhCCCHHHHcC
Confidence 66 777777777777763
No 36
>PF03374 ANT: Phage antirepressor protein KilAC domain; InterPro: IPR005039 This entry is represented by Bacteriophage P1, Ant1 C-terminal domain, which represents the processed Ant2 chain. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Prophages P1 and P7 exist as unit copy DNA plasmids in the bacterial cell. Maintenance of the prophage state requires the continuous expression of two repressors: (i) C1 is a protein which negatively regulates the expression of lytic genes including the C1 inactivator gene coi, and (ii) C4 is an antisense RNA which specifically inhibits the synthesis of an anti-repressor Ant.; GO: 0003677 DNA binding
Probab=20.24 E-value=91 Score=20.42 Aligned_cols=19 Identities=32% Similarity=0.464 Sum_probs=15.2
Q ss_pred CCCchHHHHHHHHhcCCCCC
Q psy4188 44 DTNFTGRSIARIFHGIPSPN 63 (98)
Q Consensus 44 ~~~ftgRaVARIfHGI~SP~ 63 (98)
+..+|-+.+|+++ ||+...
T Consensus 22 ~~~~ti~~~AK~L-~i~~~~ 40 (111)
T PF03374_consen 22 DGLYTIREAAKLL-GIGRNK 40 (111)
T ss_pred CCCccHHHHHHHh-CCCHHH
Confidence 3579999999999 888543
Done!