Query psy4188
Match_columns 98
No_of_seqs 78 out of 80
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 19:06:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4188.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4188hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bl4_A Uncharacterized protein 65.6 3.5 0.00012 28.0 2.2 43 28-70 62-112 (124)
2 2ns0_A Hypothetical protein; r 43.2 32 0.0011 22.4 3.9 29 28-56 5-34 (85)
3 3lhi_A Putative 6-phosphogluco 39.1 16 0.00055 26.5 2.2 24 48-72 198-221 (232)
4 3poj_A Mannan-binding lectin s 38.1 6.5 0.00022 24.7 -0.1 8 59-66 16-23 (115)
5 1qbj_A Protein (double-strande 37.7 49 0.0017 20.5 4.1 33 25-57 5-38 (81)
6 1nzi_A Complement C1S componen 29.8 11 0.00036 24.9 -0.1 8 59-66 8-15 (159)
7 3end_A Light-independent proto 27.2 13 0.00045 26.8 0.0 14 57-70 8-21 (307)
8 1szb_A Mannose binding lectin- 25.3 14 0.00049 24.8 -0.1 9 59-67 15-23 (170)
9 2kgf_A Capsid protein P27; ret 25.0 31 0.001 24.3 1.6 19 74-92 12-30 (140)
10 1pp5_A Microcin J25; lariat, p 24.7 17 0.00059 18.8 0.2 9 55-63 9-17 (26)
11 3oou_A LIN2118 protein; protei 24.2 45 0.0015 20.4 2.1 51 30-88 5-55 (108)
12 2buj_A Serine/threonine-protei 23.9 70 0.0024 22.3 3.3 40 28-67 273-312 (317)
13 3mn2_A Probable ARAC family tr 22.7 73 0.0025 19.4 2.9 50 31-88 3-52 (108)
14 3lwd_A 6-phosphogluconolactona 21.2 51 0.0018 23.8 2.2 25 48-72 194-218 (226)
15 1x3a_A Synapse associated prot 20.7 65 0.0022 21.0 2.4 52 29-96 43-94 (100)
16 2wno_A Tumor necrosis factor-i 20.6 20 0.0007 23.9 -0.1 8 59-66 18-25 (149)
17 3oio_A Transcriptional regulat 20.5 93 0.0032 19.1 3.1 52 29-88 6-57 (113)
No 1
>3bl4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 2.20A {Arthrobacter SP}
Probab=65.59 E-value=3.5 Score=28.03 Aligned_cols=43 Identities=16% Similarity=0.209 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhhcc--------CCCchHHHHHHHHhcCCCCCCchHhhc
Q psy4188 28 EDLLISDIHSLVNSYR--------DTNFTGRSIARIFHGIPSPNFPAIVFG 70 (98)
Q Consensus 28 e~~ir~dIr~ll~~~~--------~~~ftgRaVARIfHGI~SP~yPa~~W~ 70 (98)
...+.++.|.++.... +..+..|.||++|-|+..|.+|++...
T Consensus 62 ~~~~s~~AR~~~~~~~~~~a~Al~g~s~~~r~ia~~~l~~~~~~~pt~fF~ 112 (124)
T 3bl4_A 62 TADVSRGARAVFGRPCQASRIALLGSSPVDRVLANFFLGINAVPCPTKFFT 112 (124)
T ss_dssp STHHHHHHHHHHCCCCCEEEEEEECSSGGGHHHHHHHHHHHCCSSCEEEES
T ss_pred ccCCCHHHHHHHhCccceeEEEEEcCCHHHHHHHHHHHHhcCCCCCceeeC
Confidence 3567777888877643 457899999999999999999987543
No 2
>2ns0_A Hypothetical protein; rhodococcus structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} SCOP: a.4.5.76
Probab=43.17 E-value=32 Score=22.41 Aligned_cols=29 Identities=17% Similarity=0.243 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhhcc-CCCchHHHHHHHH
Q psy4188 28 EDLLISDIHSLVNSYR-DTNFTGRSIARIF 56 (98)
Q Consensus 28 e~~ir~dIr~ll~~~~-~~~ftgRaVARIf 56 (98)
+..|...|..||..+. +.+..+-.|||-+
T Consensus 5 ~~~le~~Il~ll~~R~~~kTicPSEvARal 34 (85)
T 2ns0_A 5 DRELEECIRALLDARADSASICPSDVARAV 34 (85)
T ss_dssp HHHHHHHHHHHHHHSCTTCCBCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCCcCHHHHHHHh
Confidence 4689999999999986 4789999999999
No 3
>3lhi_A Putative 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.33A {Neisseria gonorrhoeae}
Probab=39.11 E-value=16 Score=26.50 Aligned_cols=24 Identities=8% Similarity=0.194 Sum_probs=19.8
Q ss_pred hHHHHHHHHhcCCCCCCchHhhccc
Q psy4188 48 TGRSIARIFHGIPSPNFPAIVFGRN 72 (98)
Q Consensus 48 tgRaVARIfHGI~SP~yPa~~W~r~ 72 (98)
-+.+|.+++.| .++.+||..=..+
T Consensus 198 Ka~av~~~l~g-~~~~~Pas~l~~h 221 (232)
T 3lhi_A 198 KKAVFDQAAQG-ENREYPISLVLNH 221 (232)
T ss_dssp HHHHHHHHHTS-CCTTSTHHHHHTS
T ss_pred HHHHHHHHHhC-CCccCcHHHHHhC
Confidence 46789999999 6899999876554
No 4
>3poj_A Mannan-binding lectin serine protease 1; CUB domain, Ca2+ binding site, complex with ethylamine, COMP protein, lectin pathway of complement; 1.45A {Rattus norvegicus} PDB: 3pob_A 3pof_A 3pog_A 3poi_A 3poe_A
Probab=38.05 E-value=6.5 Score=24.66 Aligned_cols=8 Identities=50% Similarity=1.186 Sum_probs=7.1
Q ss_pred CCCCCCch
Q psy4188 59 IPSPNFPA 66 (98)
Q Consensus 59 I~SP~yPa 66 (98)
|.||+||.
T Consensus 16 i~SP~yP~ 23 (115)
T 3poj_A 16 ITSPDYPN 23 (115)
T ss_dssp EECTTTTS
T ss_pred EcCCCCCc
Confidence 68999997
No 5
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=37.67 E-value=49 Score=20.50 Aligned_cols=33 Identities=9% Similarity=0.028 Sum_probs=24.0
Q ss_pred CChHHHHHHHHHHHHhhcc-CCCchHHHHHHHHh
Q psy4188 25 LTKEDLLISDIHSLVNSYR-DTNFTGRSIARIFH 57 (98)
Q Consensus 25 l~~e~~ir~dIr~ll~~~~-~~~ftgRaVARIfH 57 (98)
++-.+.+...|-.+|..++ +..+|+..||+.|-
T Consensus 5 ~s~~~~~~~~IL~~L~~~~pg~~~t~~eLA~~Lg 38 (81)
T 1qbj_A 5 LSIYQDQEQRILKFLEELGEGKATTAHDLSGKLG 38 (81)
T ss_dssp -CHHHHHHHHHHHHHHHHCTTCCBCHHHHHHHHT
T ss_pred cccchHHHHHHHHHHHHcCCCCCcCHHHHHHHHC
Confidence 3334556677888888887 56789999998873
No 6
>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1
Probab=29.83 E-value=11 Score=24.86 Aligned_cols=8 Identities=63% Similarity=1.157 Sum_probs=7.0
Q ss_pred CCCCCCch
Q psy4188 59 IPSPNFPA 66 (98)
Q Consensus 59 I~SP~yPa 66 (98)
|.||+||.
T Consensus 8 i~SP~yP~ 15 (159)
T 1nzi_A 8 ILSPNYPQ 15 (159)
T ss_dssp EECTTTTS
T ss_pred EECCCCcc
Confidence 78999996
No 7
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=27.25 E-value=13 Score=26.83 Aligned_cols=14 Identities=43% Similarity=0.584 Sum_probs=0.0
Q ss_pred hcCCCCCCchHhhc
Q psy4188 57 HGIPSPNFPAIVFG 70 (98)
Q Consensus 57 HGI~SP~yPa~~W~ 70 (98)
|||+||.||..-=+
T Consensus 8 ~~~~~~~~~~~~~~ 21 (307)
T 3end_A 8 HGMGSPKDLTIPTG 21 (307)
T ss_dssp --------------
T ss_pred cCCCCcccccCCcC
Confidence 78999998865433
No 8
>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1
Probab=25.32 E-value=14 Score=24.75 Aligned_cols=9 Identities=44% Similarity=0.951 Sum_probs=7.3
Q ss_pred CCCCCCchH
Q psy4188 59 IPSPNFPAI 67 (98)
Q Consensus 59 I~SP~yPa~ 67 (98)
|.||+||..
T Consensus 15 i~SP~yP~~ 23 (170)
T 1szb_A 15 LASPGFPGE 23 (170)
T ss_dssp EECTTTTSC
T ss_pred EECCCCCcC
Confidence 789999953
No 9
>2kgf_A Capsid protein P27; retrovirus capsid protein, N-terminal core domain (SCOP), viral protein; NMR {Mason-pfizer monkey virus}
Probab=25.03 E-value=31 Score=24.30 Aligned_cols=19 Identities=32% Similarity=0.643 Sum_probs=16.7
Q ss_pred hhhhcccCCHHHHHHHHHH
Q psy4188 74 YWRSHMDQDFGLLCKLAAR 92 (98)
Q Consensus 74 fWr~~~~~dF~~i~~~At~ 92 (98)
-|+.|..+||..|-++.+.
T Consensus 12 ~~~~~~pl~~K~iKeLk~A 30 (140)
T 2kgf_A 12 AWRHHNGFDFAVIKELKTA 30 (140)
T ss_dssp EEEEECCCCHHHHHHHHHH
T ss_pred CcccccCCCHHHHHHHHHH
Confidence 4999999999999998764
No 10
>1pp5_A Microcin J25; lariat, protoknot, backbone-sidechain amide linkage, structu genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: j.5.1.1 PDB: 1q71_A
Probab=24.65 E-value=17 Score=18.80 Aligned_cols=9 Identities=44% Similarity=0.726 Sum_probs=6.9
Q ss_pred HHhcCCCCC
Q psy4188 55 IFHGIPSPN 63 (98)
Q Consensus 55 IfHGI~SP~ 63 (98)
-|-|||+|-
T Consensus 9 yfvgigtpi 17 (26)
T 1pp5_A 9 YFVGIGTPI 17 (26)
T ss_dssp CCSSSSCCC
T ss_pred eeEecCCCe
Confidence 367999984
No 11
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=24.22 E-value=45 Score=20.43 Aligned_cols=51 Identities=14% Similarity=0.303 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhhccCCCchHHHHHHHHhcCCCCCCchHhhccchhhhhcccCCHHHHHH
Q psy4188 30 LLISDIHSLVNSYRDTNFTGRSIARIFHGIPSPNFPAIVFGRNRYWRSHMDQDFGLLCK 88 (98)
Q Consensus 30 ~ir~dIr~ll~~~~~~~ftgRaVARIfHGI~SP~yPa~~W~r~~fWr~~~~~dF~~i~~ 88 (98)
.+...+..+|..+....+|-..||+.++ + ||.+= ++..+++.++.|...+.
T Consensus 5 ~~i~~~~~~i~~~~~~~~~~~~lA~~~~-~-S~~~l------~r~fk~~~G~s~~~~~~ 55 (108)
T 3oou_A 5 PIIQNVLSYITEHFSEGMSLKTLGNDFH-I-NAVYL------GQLFQKEMGEHFTDYLN 55 (108)
T ss_dssp CHHHHHHHHHHHHTTSCCCHHHHHHHHT-S-CHHHH------HHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHC-c-CHHHH------HHHHHHHHCcCHHHHHH
Confidence 4556788899999888899999999864 4 33322 24566777777776543
No 12
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=23.92 E-value=70 Score=22.26 Aligned_cols=40 Identities=8% Similarity=-0.012 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhhccCCCchHHHHHHHHhcCCCCCCchH
Q psy4188 28 EDLLISDIHSLVNSYRDTNFTGRSIARIFHGIPSPNFPAI 67 (98)
Q Consensus 28 e~~ir~dIr~ll~~~~~~~ftgRaVARIfHGI~SP~yPa~ 67 (98)
...+..=|+..|...|..+.|...|...|..+..|.-+..
T Consensus 273 ~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~~~~~~~~~~ 312 (317)
T 2buj_A 273 SSALWQLLNSMMTVDPHQRPHIPLLLSQLEALQPPAPGQH 312 (317)
T ss_dssp CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTCCCCCC--
T ss_pred CHHHHHHHHHHhhcChhhCCCHHHHHHHhhhcCCCCCCCC
Confidence 3678888899999999999999999999999998877653
No 13
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=22.67 E-value=73 Score=19.36 Aligned_cols=50 Identities=8% Similarity=0.053 Sum_probs=35.7
Q ss_pred HHHHHHHHHhhccCCCchHHHHHHHHhcCCCCCCchHhhccchhhhhcccCCHHHHHH
Q psy4188 31 LISDIHSLVNSYRDTNFTGRSIARIFHGIPSPNFPAIVFGRNRYWRSHMDQDFGLLCK 88 (98)
Q Consensus 31 ir~dIr~ll~~~~~~~ftgRaVARIfHGI~SP~yPa~~W~r~~fWr~~~~~dF~~i~~ 88 (98)
+...|..+|..+.+..+|-..||+.+ |++ |.+= ++..+++.++.|...+.
T Consensus 3 ~i~~~~~~i~~~~~~~~~~~~lA~~~-~~s-~~~l------~r~fk~~~G~s~~~~~~ 52 (108)
T 3mn2_A 3 AVRQVEEYIEANWMRPITIEKLTALT-GIS-SRGI------FKAFQRSRGYSPMAFAK 52 (108)
T ss_dssp HHHHHHHHHHHHTTSCCCHHHHHHHH-TCC-HHHH------HHHHHHHTSSCHHHHHH
T ss_pred HHHHHHHHHHHcccCCCCHHHHHHHH-CCC-HHHH------HHHHHHHhCcCHHHHHH
Confidence 45678888888888889999999987 453 3322 25566777788777654
No 14
>3lwd_A 6-phosphogluconolactonase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; 1.75A {Chromohalobacter salexigens}
Probab=21.16 E-value=51 Score=23.82 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=20.4
Q ss_pred hHHHHHHHHhcCCCCCCchHhhccc
Q psy4188 48 TGRSIARIFHGIPSPNFPAIVFGRN 72 (98)
Q Consensus 48 tgRaVARIfHGI~SP~yPa~~W~r~ 72 (98)
=+.+|.+++.|=.|+.+||..-..+
T Consensus 194 Ka~av~~~l~g~~~~~~Pas~l~~h 218 (226)
T 3lwd_A 194 KRRVLAEALAGDDVRQLPIRAFLSQ 218 (226)
T ss_dssp HHHHHHHHHHCCCTTTSTTHHHHTS
T ss_pred HHHHHHHHHcCCCCCcCChHHHhcC
Confidence 4678999999988899999876554
No 15
>1x3a_A Synapse associated protein 1; BSD domain, homolog of the drosophila SAP47, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.240.1.1
Probab=20.72 E-value=65 Score=20.99 Aligned_cols=52 Identities=12% Similarity=0.293 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhhccCCCchHHHHHHHHhcCCCCCCchHhhccchhhhhcccCCHHHHHHHHHHHHHh
Q psy4188 29 DLLISDIHSLVNSYRDTNFTGRSIARIFHGIPSPNFPAIVFGRNRYWRSHMDQDFGLLCKLAARELIK 96 (98)
Q Consensus 29 ~~ir~dIr~ll~~~~~~~ftgRaVARIfHGI~SP~yPa~~W~r~~fWr~~~~~dF~~i~~~At~Ell~ 96 (98)
+....+|..+|..++ .+..+.--|- |..+ ....||++| |..+.++-++|=++
T Consensus 43 d~~~~~i~~lL~~dp-------~L~~l~~~LV----P~~v-~e~~FW~rY----Fyrv~~i~q~ee~r 94 (100)
T 1x3a_A 43 DQMYPVALVMLQEDE-------LLSKMRFALV----PKLV-KEEVFWRNY----FYRVSLIKQSAQLT 94 (100)
T ss_dssp HHHHHHHHHHHHHCH-------HHHHHHHHTT----TTTS-CHHHHHHHH----HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCH-------HHHHHHHHHC----CCCc-CHHHHHHHH----HHHHHHHHHHHHHh
Confidence 445567777887776 2333333332 3222 334899999 88888887777543
No 16
>2wno_A Tumor necrosis factor-inducible gene 6 protein; glycoprotein, cell adhesion, extracellular matrix; 2.30A {Homo sapiens}
Probab=20.55 E-value=20 Score=23.88 Aligned_cols=8 Identities=50% Similarity=1.036 Sum_probs=7.0
Q ss_pred CCCCCCch
Q psy4188 59 IPSPNFPA 66 (98)
Q Consensus 59 I~SP~yPa 66 (98)
|.||+||.
T Consensus 18 i~SP~yP~ 25 (149)
T 2wno_A 18 FKSPGFPN 25 (149)
T ss_dssp EECTTTTS
T ss_pred EECCCCCc
Confidence 78999995
No 17
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=20.46 E-value=93 Score=19.07 Aligned_cols=52 Identities=12% Similarity=0.100 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhhccCCCchHHHHHHHHhcCCCCCCchHhhccchhhhhcccCCHHHHHH
Q psy4188 29 DLLISDIHSLVNSYRDTNFTGRSIARIFHGIPSPNFPAIVFGRNRYWRSHMDQDFGLLCK 88 (98)
Q Consensus 29 ~~ir~dIr~ll~~~~~~~ftgRaVARIfHGI~SP~yPa~~W~r~~fWr~~~~~dF~~i~~ 88 (98)
+.....+..+|..+....+|-..||+.++ + ||.+= ++..+++.++.|...+.
T Consensus 6 ~~~i~~~~~~i~~~~~~~~~~~~lA~~~~-~-S~~~l------~r~fk~~~G~s~~~~~~ 57 (113)
T 3oio_A 6 QPKLTEAVSLMEANIEEPLSTDDIAYYVG-V-SRRQL------ERLFKQYLGTVPSKYYL 57 (113)
T ss_dssp CHHHHHHHHHHHTCSSSCCCHHHHHHHHT-S-CHHHH------HHHHHHHTSSCHHHHHH
T ss_pred hHHHHHHHHHHHhhhcCCCCHHHHHHHHC-c-CHHHH------HHHHHHHHCcCHHHHHH
Confidence 45566888999999888899999999864 4 33221 25667777888876644
Done!