Query psy4188
Match_columns 98
No_of_seqs 78 out of 80
Neff 4.4
Searched_HMMs 13730
Date Fri Aug 16 19:06:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4188.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4188hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2qqma3 b.23.1.1 (A:156-263) M 52.0 1.4 9.9E-05 25.6 -0.1 8 59-66 3-10 (108)
2 d1nzia1 b.23.1.1 (A:1-117) Com 48.0 1.7 0.00013 25.7 -0.1 11 56-66 4-15 (117)
3 d1d5ya1 a.4.1.8 (A:3-56) Rob t 46.2 5 0.00036 21.3 1.8 28 29-56 2-29 (54)
4 d2ia7a1 d.373.1.1 (A:23-133) U 45.8 6.6 0.00048 23.9 2.5 21 26-46 6-26 (111)
5 d2ns0a1 a.4.5.76 (A:1-85) Hypo 44.7 15 0.0011 22.4 4.0 31 27-57 4-35 (85)
6 d1szba1 b.23.1.1 (A:3-123) Man 42.7 2.3 0.00017 25.3 -0.1 8 59-66 13-20 (121)
7 d1nt0a2 b.23.1.1 (A:165-278) M 41.6 2.5 0.00018 25.1 -0.1 9 59-67 13-21 (114)
8 d1a0pa1 a.60.9.1 (A:3-100) Rec 40.3 5 0.00036 23.5 1.2 27 33-59 51-77 (98)
9 d2gxba1 a.4.5.19 (A:140-198) Z 38.2 14 0.00099 21.4 2.9 23 35-57 4-27 (59)
10 d1sppa_ b.23.1.1 (A:) Major se 28.9 5.4 0.0004 23.5 -0.0 8 59-66 17-24 (109)
11 d1r4wa_ c.47.1.13 (A:) Mitocho 26.3 6.4 0.00046 24.8 -0.1 25 48-75 171-203 (221)
12 d1mv8a1 a.100.1.4 (A:203-300) 21.4 12 0.00089 22.4 0.6 13 58-70 61-73 (98)
13 d1li4a1 c.2.1.4 (A:190-352) S- 21.3 20 0.0015 23.8 1.7 15 47-61 34-48 (163)
14 d1sbza_ c.34.1.1 (A:) Probable 21.1 21 0.0015 23.4 1.8 15 47-61 86-100 (186)
No 1
>d2qqma3 b.23.1.1 (A:156-263) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=52.02 E-value=1.4 Score=25.60 Aligned_cols=8 Identities=63% Similarity=1.173 Sum_probs=6.9
Q ss_pred CCCCCCch
Q psy4188 59 IPSPNFPA 66 (98)
Q Consensus 59 I~SP~yPa 66 (98)
|.||+||.
T Consensus 3 i~SP~yP~ 10 (108)
T d2qqma3 3 IKSPGFPE 10 (108)
T ss_dssp EECTTTTS
T ss_pred EeCCCCCC
Confidence 67999996
No 2
>d1nzia1 b.23.1.1 (A:1-117) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}
Probab=48.00 E-value=1.7 Score=25.72 Aligned_cols=11 Identities=55% Similarity=1.023 Sum_probs=8.4
Q ss_pred Hhc-CCCCCCch
Q psy4188 56 FHG-IPSPNFPA 66 (98)
Q Consensus 56 fHG-I~SP~yPa 66 (98)
+|| |.||+||.
T Consensus 4 ~~G~i~SP~yP~ 15 (117)
T d1nzia1 4 MYGEILSPNYPQ 15 (117)
T ss_dssp SEEEEECTTTTS
T ss_pred cEEEEeCCCCCC
Confidence 344 78999996
No 3
>d1d5ya1 a.4.1.8 (A:3-56) Rob transcription factor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=46.21 E-value=5 Score=21.26 Aligned_cols=28 Identities=14% Similarity=0.094 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhhccCCCchHHHHHHHH
Q psy4188 29 DLLISDIHSLVNSYRDTNFTGRSIARIF 56 (98)
Q Consensus 29 ~~ir~dIr~ll~~~~~~~ftgRaVARIf 56 (98)
..+..+|..+|..|.++.+|-..+|+.+
T Consensus 2 ~~ii~~i~~yi~~~~~~~itl~~lA~~~ 29 (54)
T d1d5ya1 2 AGIIRDLLIWLEGHLDQPLSLDNVAAKA 29 (54)
T ss_dssp HHHHHHHHHHHHTTSSSSCCCHHHHTTT
T ss_pred HHHHHHHHHHHHHccCCCCCHHHHHHHH
Confidence 3567788999999988888877777765
No 4
>d2ia7a1 d.373.1.1 (A:23-133) Uncharacterized protein GSU0986 {Geobacter sulfurreducens [TaxId: 35554]}
Probab=45.80 E-value=6.6 Score=23.88 Aligned_cols=21 Identities=14% Similarity=0.291 Sum_probs=18.9
Q ss_pred ChHHHHHHHHHHHHhhccCCC
Q psy4188 26 TKEDLLISDIHSLVNSYRDTN 46 (98)
Q Consensus 26 ~~e~~ir~dIr~ll~~~~~~~ 46 (98)
+.++.|+.+|+.+|.+++|++
T Consensus 6 s~ee~I~q~i~nll~T~~GEr 26 (111)
T d2ia7a1 6 SAEEDIAESIRIILGTARGER 26 (111)
T ss_dssp CHHHHHHHHHHHHHTCCTTSS
T ss_pred ccHHHHHHHHHHHhCCCCCcc
Confidence 568999999999999999874
No 5
>d2ns0a1 a.4.5.76 (A:1-85) Hypothetical protein RHA1_ro06458 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=44.65 E-value=15 Score=22.44 Aligned_cols=31 Identities=16% Similarity=0.220 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHhhcc-CCCchHHHHHHHHh
Q psy4188 27 KEDLLISDIHSLVNSYR-DTNFTGRSIARIFH 57 (98)
Q Consensus 27 ~e~~ir~dIr~ll~~~~-~~~ftgRaVARIfH 57 (98)
.+..|...|..||..+. +..+.+-.|||-+-
T Consensus 4 ~d~~le~~Il~Ll~~R~~~~ticPsEvARal~ 35 (85)
T d2ns0a1 4 SDRELEECIRALLDARADSASICPSDVARAVA 35 (85)
T ss_dssp CHHHHHHHHHHHHHHSCTTCCBCHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHhcCCCCCcCHHHHHHHhC
Confidence 46789999999998876 57899999999984
No 6
>d1szba1 b.23.1.1 (A:3-123) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.73 E-value=2.3 Score=25.31 Aligned_cols=8 Identities=50% Similarity=1.182 Sum_probs=7.1
Q ss_pred CCCCCCch
Q psy4188 59 IPSPNFPA 66 (98)
Q Consensus 59 I~SP~yPa 66 (98)
|.||+||.
T Consensus 13 i~SP~yP~ 20 (121)
T d1szba1 13 LASPGFPG 20 (121)
T ss_dssp EECTTTTS
T ss_pred EeCCCCCC
Confidence 78999996
No 7
>d1nt0a2 b.23.1.1 (A:165-278) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=41.55 E-value=2.5 Score=25.12 Aligned_cols=9 Identities=33% Similarity=0.881 Sum_probs=7.3
Q ss_pred CCCCCCchH
Q psy4188 59 IPSPNFPAI 67 (98)
Q Consensus 59 I~SP~yPa~ 67 (98)
|.||+||..
T Consensus 13 i~SP~yP~~ 21 (114)
T d1nt0a2 13 LSSPEYPQP 21 (114)
T ss_dssp EECTTTTSC
T ss_pred EECCCCCCC
Confidence 689999953
No 8
>d1a0pa1 a.60.9.1 (A:3-100) Recombinase XerD {Escherichia coli [TaxId: 562]}
Probab=40.26 E-value=5 Score=23.54 Aligned_cols=27 Identities=19% Similarity=0.436 Sum_probs=16.0
Q ss_pred HHHHHHHhhccCCCchHHHHHHHHhcC
Q psy4188 33 SDIHSLVNSYRDTNFTGRSIARIFHGI 59 (98)
Q Consensus 33 ~dIr~ll~~~~~~~ftgRaVARIfHGI 59 (98)
.||+.++....+..++++.|+|.+-+|
T Consensus 51 ~~i~~yl~~l~~~g~s~~Ti~r~lsal 77 (98)
T d1a0pa1 51 DDLQALLAERLEGGYKATSSARLLSAV 77 (98)
T ss_dssp HHHHHHHHSCC-------CHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccchHHHHHHHH
Confidence 488999988777778999999987654
No 9
>d2gxba1 a.4.5.19 (A:140-198) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.23 E-value=14 Score=21.36 Aligned_cols=23 Identities=9% Similarity=0.099 Sum_probs=17.5
Q ss_pred HHHHHhh-ccCCCchHHHHHHHHh
Q psy4188 35 IHSLVNS-YRDTNFTGRSIARIFH 57 (98)
Q Consensus 35 Ir~ll~~-~~~~~ftgRaVARIfH 57 (98)
|-.||.. -++..+|++++||=||
T Consensus 4 vl~~l~~lg~~~~~tA~~LA~kl~ 27 (59)
T d2gxba1 4 ILKFLEELGEGKATTAHDLSGKLG 27 (59)
T ss_dssp HHHHHHHHCTTCCBCHHHHHHHHT
T ss_pred HHHHHHhcCCccchhHHHHHHHhC
Confidence 4456655 6678899999999775
No 10
>d1sppa_ b.23.1.1 (A:) Major seminal plasma glycoprotein PSP-I {Pig (Sus scrofa) [TaxId: 9823]}
Probab=28.92 E-value=5.4 Score=23.49 Aligned_cols=8 Identities=25% Similarity=0.060 Sum_probs=7.1
Q ss_pred CCCCCCch
Q psy4188 59 IPSPNFPA 66 (98)
Q Consensus 59 I~SP~yPa 66 (98)
|.||+||.
T Consensus 17 i~Sp~yP~ 24 (109)
T d1sppa_ 17 IFTYKGPK 24 (109)
T ss_dssp EECCCSSC
T ss_pred EeCCCCCC
Confidence 78999995
No 11
>d1r4wa_ c.47.1.13 (A:) Mitochondrial class kappa glutathione S-transferase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=26.26 E-value=6.4 Score=24.80 Aligned_cols=25 Identities=28% Similarity=0.407 Sum_probs=15.1
Q ss_pred hHHHHHHHHhcC-CCCCCc-------hHhhccchhh
Q psy4188 48 TGRSIARIFHGI-PSPNFP-------AIVFGRNRYW 75 (98)
Q Consensus 48 tgRaVARIfHGI-~SP~yP-------a~~W~r~~fW 75 (98)
|.+|+++ |+ |+|.|= -..||++|++
T Consensus 171 ~~~A~~~---GvfGvPtfvi~~~~~~e~f~G~Drl~ 203 (221)
T d1r4wa_ 171 TGAACKY---GAFGLPTTVAHVDGKTYMLFGSDRME 203 (221)
T ss_dssp HHHHHHT---TCCSSCEEEEEETTEEEEEESTTCHH
T ss_pred HHHHHHC---CCeECCEEEEccCCCcceeecccCHH
Confidence 5566654 55 888882 2356766553
No 12
>d1mv8a1 a.100.1.4 (A:203-300) GDP-mannose 6-dehydrogenase, middle domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=21.38 E-value=12 Score=22.43 Aligned_cols=13 Identities=15% Similarity=0.130 Sum_probs=11.1
Q ss_pred cCCCCCCchHhhc
Q psy4188 58 GIPSPNFPAIVFG 70 (98)
Q Consensus 58 GI~SP~yPa~~W~ 70 (98)
|.|.||+|-+.+.
T Consensus 61 G~GG~ClpKD~~a 73 (98)
T d1mv8a1 61 AFGGSCLPKDVRA 73 (98)
T ss_dssp CCCSSSHHHHHHH
T ss_pred cCCccccchhHHH
Confidence 9999999987654
No 13
>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.33 E-value=20 Score=23.76 Aligned_cols=15 Identities=20% Similarity=0.377 Sum_probs=13.5
Q ss_pred chHHHHHHHHhcCCC
Q psy4188 47 FTGRSIARIFHGIPS 61 (98)
Q Consensus 47 ftgRaVARIfHGI~S 61 (98)
+-||.+|++++|.|.
T Consensus 34 ~iG~g~A~~~rg~G~ 48 (163)
T d1li4a1 34 DVGKGCAQALRGFGA 48 (163)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHhCCC
Confidence 679999999999984
No 14
>d1sbza_ c.34.1.1 (A:) Probable aromatic acid decarboxylase Pad1 {Escherichia coli O157:H7 [TaxId: 83334]}
Probab=21.12 E-value=21 Score=23.41 Aligned_cols=15 Identities=20% Similarity=0.275 Sum_probs=13.8
Q ss_pred chHHHHHHHHhcCCC
Q psy4188 47 FTGRSIARIFHGIPS 61 (98)
Q Consensus 47 ftgRaVARIfHGI~S 61 (98)
-|+..+|+|-|||+.
T Consensus 86 aTanTlAKiA~GiaD 100 (186)
T d1sbza_ 86 CSMKTLAGIRAGYAD 100 (186)
T ss_dssp ECHHHHHHHHHTCCC
T ss_pred ccHhHHHHHHcCCCC
Confidence 699999999999985
Done!