RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4188
(98 letters)
>gnl|CDD|149915 pfam09001, DUF1890, Domain of unknown function (DUF1890). This
domain is found in a set of hypothetical archaeal
proteins.
Length = 138
Score = 30.0 bits (68), Expect = 0.12
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 9/66 (13%)
Query: 7 RRYFQDENDVDATAPEIKLTKEDLLISDIHSLVNSYRDTNFTGRSIARIFHGIPSPNFPA 66
+ Y ++ D+D +I DL+ +H N G S A + + A
Sbjct: 49 KYYLKEVVDLDKGIADIAEGDFDLIFGFVH---------NDAGVSYAVTMKAVSNAKTYA 99
Query: 67 IVFGRN 72
IVFG +
Sbjct: 100 IVFGEH 105
>gnl|CDD|215249 PLN02454, PLN02454, triacylglycerol lipase.
Length = 414
Score = 29.8 bits (67), Expect = 0.19
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 16/70 (22%)
Query: 17 DATAPEIKLTKEDLLISDIHSLVNSYRDTN----FTGRSIAR----------IFHGIPSP 62
D +P KL+ L++ I L+ Y+D TG S+ + +G+
Sbjct: 198 DPRSPFTKLSARSQLLAKIKELLERYKDEKLSIVLTGHSLGASLATLAAFDIVENGVSGA 257
Query: 63 NFP--AIVFG 70
+ P AIVFG
Sbjct: 258 DIPVTAIVFG 267
>gnl|CDD|99910 cd05568, PTS_IIB_bgl_like, PTS_IIB_bgl_like: the PTS
(phosphotransferase system) IIB domain of a family of
sensory systems composed of a membrane-bound
sugar-sensor (similar to BglF) and a transcription
antiterminator (similar to BglG) which regulate
expression of genes involved in sugar utilization. The
domain architecture of the IIB-containing protein
includes a region N-terminal to the IIB domain which is
homologous to the BglG transcription antiterminator
with an RNA-binding domain followed by two homologous
domains, PRD1 and PRD2 (PTS Regulation Domains).
C-terminal to the IIB domain is a domain similar to the
PTS IIA domain. In this system, the BglG-like region
and the IIB and IIA-like domains are all expressed
together as a single multidomain protein. The IIB
domain fold includes a central four-stranded parallel
open twisted beta-sheet flanked by alpha-helices on
both sides. The seven major PTS systems with this IIB
fold include this sensory system with similarity to the
bacterial bgl system, chitobiose/lichenan, ascorbate,
lactose, galactitol, mannitol, and fructose systems.
Length = 85
Score = 27.9 bits (63), Expect = 0.42
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 1 MLKSKLRRYFQDENDVDA----TAPEIKLTKEDLLIS 33
+LKSKL++ F + +D E+ L DL+IS
Sbjct: 16 LLKSKLKKLFPEIEIIDVISLRELEEVDLDDYDLIIS 52
>gnl|CDD|99904 cd00133, PTS_IIB, PTS_IIB: subunit IIB of enzyme II (EII) is the
central energy-coupling domain of the
phosphoenolpyruvate:carbohydrate phosphotransferase
system (PTS). In the multienzyme PTS complex, EII is a
carbohydrate-specific permease consisting of two
cytoplasmic domains (IIA and IIB) and a transmembrane
channel IIC domain. The IIB domain fold includes a
central four-stranded parallel open twisted beta-sheet
flanked by alpha-helices on both sides. The seven major
PTS systems with this IIB fold include
chitobiose/lichenan, ascorbate, lactose, galactitol,
mannitol, fructose, and a sensory system with
similarity to the bacterial bgl system. The PTS is
found only in bacteria, where it catalyzes the
transport and phosphorylation of numerous
monosaccharides, disaccharides, polyols, amino sugars,
and other sugar derivatives. The four proteins
(domains) forming the PTS phosphorylation cascade (EI,
HPr, EIIA, and EIIB), can phosphorylate or interact
with numerous non-PTS proteins thereby regulating their
activity.
Length = 84
Score = 26.4 bits (59), Expect = 1.3
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 1 MLKSKLRRYFQDEN---DVDATAPE--IKLTKEDLLISDIH 36
ML KL + ++ V+A I L DL+IS +
Sbjct: 15 MLAEKLEKAAKELGIEVKVEAQGLSEVIDLADADLIISTVP 55
>gnl|CDD|226689 COG4238, COG4238, Murein lipoprotein [Cell envelope biogenesis,
outer membrane].
Length = 78
Score = 26.0 bits (57), Expect = 1.5
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 11 QDENDVDATAPEIKLTKED 29
Q ENDV+A +++ K++
Sbjct: 43 QLENDVNAMRSDVQAAKDE 61
>gnl|CDD|221433 pfam12130, DUF3585, Protein of unknown function (DUF3585). This
domain is found in eukaryotes. This domain is typically
between 135 and 149 amino acids in length and is found
associated with pfam00307.
Length = 142
Score = 26.9 bits (60), Expect = 1.5
Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 1 MLKSKLRRYFQDENDVDATAPEIKLTKEDLLISDIHSLVNSYRD 44
L+ +LR + + T + + +E+ L+ ++ LV RD
Sbjct: 81 DLEQELRALL-SKPEHLKTEEDRQ--REEELLQELVKLVQK-RD 120
>gnl|CDD|233178 TIGR00907, 2A0304, amino acid permease (GABA permease). [Transport
and binding proteins, Amino acids, peptides and amines].
Length = 482
Score = 26.6 bits (59), Expect = 2.5
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Query: 32 ISDIHSLVNSYRDTNFTGRSIARIFHGIPSPNFPAIVFG 70
+ DI SL++S TG+ IA+IF+ AI
Sbjct: 276 MGDIDSLISST-----TGQPIAQIFYNALGNKAGAIFLL 309
>gnl|CDD|237160 PRK12652, PRK12652, putative monovalent cation/H+ antiporter
subunit E; Reviewed.
Length = 357
Score = 26.3 bits (58), Expect = 3.2
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 8/37 (21%)
Query: 34 DIHSLVNSYRDTNFTG---RSIARIFHG-----IPSP 62
+HSL S R+ F G R++ +F+G IPSP
Sbjct: 297 LVHSLTPSAREDLFDGGLERAVRFVFYGRAAARIPSP 333
>gnl|CDD|212113 cd10802, YdjC_TTHB029_like, Thermus thermophiles TTHB029 and
similar proteins. This subfamily is represented by an
YdjC-family protein TTHB029 from Thermus thermophilus
HB8; it is similar to Escherichia coli YdjC, a
hypothetical protein encoded by the celG gene. TTHB029
functions as a homodimer. Each of monomer consists of
(beta/alpha)-barrel fold. The molecular function of
TTHB029 is unclear.
Length = 251
Score = 25.7 bits (57), Expect = 3.8
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 4/27 (14%)
Query: 59 IPSPNFPAIVFGRNRYWRSHMDQDFGL 85
+P P FP Y ++ + D GL
Sbjct: 36 VPCPWFPEAA----AYAAANPEIDVGL 58
>gnl|CDD|226067 COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate
transport and metabolism].
Length = 768
Score = 25.5 bits (56), Expect = 6.2
Identities = 7/36 (19%), Positives = 14/36 (38%)
Query: 18 ATAPEIKLTKEDLLISDIHSLVNSYRDTNFTGRSIA 53
P + L + + SL+N+Y T + +
Sbjct: 371 TLFPLLSLIQPQRYSDMLQSLLNTYEQTGALPKWLL 406
>gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase;
Reviewed.
Length = 486
Score = 25.2 bits (56), Expect = 7.6
Identities = 10/22 (45%), Positives = 10/22 (45%)
Query: 1 MLKSKLRRYFQDENDVDATAPE 22
M K RYFQ N D PE
Sbjct: 393 MSKGSSDRYFQSVNAADKLVPE 414
>gnl|CDD|215342 PLN02636, PLN02636, acyl-coenzyme A oxidase.
Length = 686
Score = 25.2 bits (55), Expect = 7.9
Identities = 17/56 (30%), Positives = 34/56 (60%), Gaps = 5/56 (8%)
Query: 1 MLKSKLRRYFQDENDVDATAPEIKLTKEDLLISDIHSL---VNSYRDTNFTGRSIA 53
ML S +F E V+ + E+K T +D L++D+H+L + +Y T++T ++++
Sbjct: 385 MLASTYAFHFATEYLVERYS-EMKKTHDDQLVADVHALSAGLKAYI-TSYTAKALS 438
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.140 0.420
Gapped
Lambda K H
0.267 0.0752 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,179,862
Number of extensions: 441563
Number of successful extensions: 558
Number of sequences better than 10.0: 1
Number of HSP's gapped: 558
Number of HSP's successfully gapped: 21
Length of query: 98
Length of database: 10,937,602
Length adjustment: 64
Effective length of query: 34
Effective length of database: 8,098,946
Effective search space: 275364164
Effective search space used: 275364164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.1 bits)