RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4188
(98 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 4e-04
Identities = 27/121 (22%), Positives = 44/121 (36%), Gaps = 31/121 (25%)
Query: 2 LKSKLRRYFQDE----NDVDATAPEIKLTKEDLLISDIHSLVNSYRDTNFTGRSIAR--I 55
L L F++ ND+ A A ++ L + D + L+ +Y T R +A+
Sbjct: 84 LNLCLT-EFENCYLEGNDIHALAAKL-LQENDTTLVKTKELIKNY----ITARIMAKRPF 137
Query: 56 FHGIPSPNFPAI---------VFG----RNRYW---RS--HMDQDF-GLLCKLAARELIK 96
S F A+ +FG + Y+ R G L K +A L +
Sbjct: 138 DKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSE 197
Query: 97 L 97
L
Sbjct: 198 L 198
Score = 28.5 bits (63), Expect = 0.34
Identities = 18/93 (19%), Positives = 30/93 (32%), Gaps = 38/93 (40%)
Query: 1 ML------KSKLRRYFQDENDVDATAPEIKLTKEDLLISDIH-SLVNSYRDTNFTGRSIA 53
ML + +++ Y N + P K + SLVN ++ +G
Sbjct: 338 MLSISNLTQEQVQDYVNKTN---SHLPAGK---------QVEISLVNGAKNLVVSG---- 381
Query: 54 RIFHGIPSPNFPAIVFGRNRYWR-----SHMDQ 81
P ++G N R S +DQ
Sbjct: 382 ----------PPQSLYGLNLTLRKAKAPSGLDQ 404
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.003
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 8/29 (27%)
Query: 2 LKSKLRRYFQDENDVDATAP--EIKLTKE 28
L++ L+ Y D +AP IK T E
Sbjct: 25 LQASLKLYADD------SAPALAIKATME 47
>1kjn_A MTH0777; hypotethical protein, structural genomics, PSI, protein
structure initiative; 2.20A
{Methanothermobacterthermautotrophicus} SCOP: c.115.1.1
Length = 157
Score = 28.1 bits (62), Expect = 0.32
Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 9/66 (13%)
Query: 7 RRYFQDENDVDATAPEIKLTKEDLLISDIHSLVNSYRDTNFTGRSIARIFHGIPSPNFPA 66
Y + D+++ E+ + L + N + F GI + A
Sbjct: 58 GIYTDEMVDLESCINELAEGDYEFLAGFVP---------NDAAAAYLVTFAGILNTETLA 108
Query: 67 IVFGRN 72
I+F R+
Sbjct: 109 IIFDRD 114
>3sqn_A Conserved domain protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, MGA family; 2.31A
{Enterococcus faecalis}
Length = 485
Score = 28.0 bits (62), Expect = 0.47
Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Query: 1 MLKSKLRRYFQDENDVDATAP----EIKLTKEDLLISDIH 36
L+ +L Y + A ++ L + D++IS+
Sbjct: 414 FLQQELAAYLGTRVKLQAIEYVELSQLTLNEADIIISNFP 453
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH,
IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio
cholerae o1 biovar el tor} PDB: 4ff0_A* 4fez_A
Length = 366
Score = 26.8 bits (60), Expect = 0.96
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 8 RYFQDENDVDATAPE 22
RYFQ +N D PE
Sbjct: 280 RYFQTDNAADKLVPE 294
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH,
IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio
cholerae o1 biovar el tor}
Length = 496
Score = 27.1 bits (61), Expect = 1.0
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 8 RYFQDENDVDATAPE 22
RYFQ +N D PE
Sbjct: 403 RYFQTDNAADKLVPE 417
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH
dihydroxybenzoate synthetase, isochroismatase...;
adenylate-forming enzymes, ANL superfamily; HET: SVS
PNS; 3.10A {Escherichia coli}
Length = 617
Score = 26.8 bits (60), Expect = 1.3
Identities = 5/38 (13%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 38 LVNSYRDTNF-TGRSIARIFHGIPSPNFPAIVFGRNRY 74
YR+ + + I + + A++ G +
Sbjct: 14 FARRYREKGYWQDLPLTDILTRHAASDSIAVIDGERQL 51
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length,
metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2
b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB:
1gxd_A
Length = 631
Score = 26.4 bits (57), Expect = 1.7
Identities = 5/36 (13%), Positives = 10/36 (27%), Gaps = 9/36 (25%)
Query: 50 RSIARIFHGIPSPNFPAIVFGRN---------RYWR 76
+ IA ++ IP + Y +
Sbjct: 575 KLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLK 610
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase
system (PTS), P-loop; NMR {Escherichia coli}
Length = 113
Score = 25.5 bits (56), Expect = 2.4
Identities = 2/35 (5%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 1 MLKSKLRRYFQDENDVDATAPEIKLTKEDLLISDI 35
M +++ Q +++ + ++ + + + +
Sbjct: 37 MAAEEIKELCQ-SHNIPVELIQCRVNEIETYMDGV 70
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport
protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A
1z98_A 2b5f_A
Length = 304
Score = 25.8 bits (57), Expect = 2.8
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 9/34 (26%)
Query: 47 FTGRSI--ARIFHGIPSPNFPAIVFGRNRYWRSH 78
TG I AR F G A++F N+ W
Sbjct: 239 ITGTGINPARSF-G------AAVIFNSNKVWDDQ 265
>1rlz_A DHS, deoxyhypusine synthase; rossman fold, NAD cofactor, spermid
transferase; HET: NAD; 2.15A {Homo sapiens} SCOP:
c.31.1.1 PDB: 1roz_A* 1rqd_A* 1dhs_A*
Length = 369
Score = 25.6 bits (55), Expect = 2.9
Identities = 4/21 (19%), Positives = 10/21 (47%)
Query: 34 DIHSLVNSYRDTNFTGRSIAR 54
+ +L+ ++ T F + R
Sbjct: 41 NYRALLEAFGTTGFQATNFGR 61
>2inf_A URO-D, UPD, uroporphyrinogen decarboxylase; (alpha-beta)8 barrel,
eight parallel beta strands surrounded by eight alpha
helices, lyase; 2.30A {Bacillus subtilis}
Length = 359
Score = 25.6 bits (57), Expect = 3.3
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 52 IARIFHGIPSPNFPAIVFGRN 72
+ RIF + N P I+FG
Sbjct: 233 MNRIFSELAKENVPLIMFGVG 253
>3ilz_A Thyroid hormone receptor, alpha isoform 1 variant; nuclear
receptor, signaling protein; HET: B72; 1.85A {Homo
sapiens} PDB: 3jzb_A* 3hzf_A* 2h79_A* 2h77_A* 1nav_A*
3uvv_A* 1xzx_X* 1y0x_X* 1nq1_A* 3jzc_A* 1nuo_A* 3imy_A*
1nq0_A* 1bsx_A* 1r6g_A* 1nq2_A* 3gws_X* 1n46_A* 2h6w_X*
2j4a_A* ...
Length = 267
Score = 24.8 bits (54), Expect = 5.3
Identities = 8/64 (12%), Positives = 17/64 (26%), Gaps = 1/64 (1%)
Query: 35 IHSLVNSYRDTNFTGRSIARIFHGIPSPNFPAIVFGRNRYWRSHMDQDFGLLCKLAAREL 94
IH ++R TN G + + + F K+ +
Sbjct: 25 IHIATEAHRSTNAQGSHW-KQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTKIITPAI 83
Query: 95 IKLR 98
++
Sbjct: 84 TRVV 87
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold,
oxidoreductase; 3.19A {Cryptosporidium parvum}
Length = 400
Score = 24.8 bits (55), Expect = 5.6
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 8 RYFQDENDVDATAPE 22
RYFQ++ + PE
Sbjct: 315 RYFQEKRPENKMVPE 329
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains;
HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Length = 589
Score = 24.8 bits (55), Expect = 6.5
Identities = 4/22 (18%), Positives = 7/22 (31%), Gaps = 3/22 (13%)
Query: 69 FGRNRYWRSHMDQDFGLLCKLA 90
W M+ D+ +A
Sbjct: 491 QFGQNNWTEFMNPDW---VGIA 509
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex,
oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium
parvum}
Length = 361
Score = 24.5 bits (54), Expect = 7.8
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 8 RYFQDENDVDATAPE 22
RYFQ++ + PE
Sbjct: 276 RYFQEKRPENKMVPE 290
>3ig5_A Glutamate-cysteine ligase; glutathione, ATP-grAsp, ATP-binding,
glutathione biosynthesis, nucleotide-binding,
phosphoprotein; HET: GLU PGE; 2.10A {Saccharomyces
cerevisiae} PDB: 3ig8_A* 3lvv_A* 3lvw_A*
Length = 692
Score = 24.3 bits (52), Expect = 8.6
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Query: 39 VNSYRDTNFTGRSIARIFHGIPSPNFPAIVFGRNRYWRSHMDQDFGLLCKLAARELIK 96
+ D SI+ IFH + FP V + + +D+ L + E +
Sbjct: 537 FRNDTDVETEDYSISEIFHNPENGIFPQFV-TPILCQKGFVTKDWKELKHSSKHERLY 593
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.140 0.420
Gapped
Lambda K H
0.267 0.0848 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,551,257
Number of extensions: 80994
Number of successful extensions: 304
Number of sequences better than 10.0: 1
Number of HSP's gapped: 303
Number of HSP's successfully gapped: 24
Length of query: 98
Length of database: 6,701,793
Length adjustment: 64
Effective length of query: 34
Effective length of database: 4,914,849
Effective search space: 167104866
Effective search space used: 167104866
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.2 bits)