RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4188
         (98 letters)



>d1kjna_ c.115.1.1 (A:) Hypothetical protein MTH777 (MT0777)
           {Archaeon Methanobacterium thermoautotrophicum [TaxId:
           145262]}
          Length = 152

 Score = 27.1 bits (60), Expect = 0.25
 Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 9/66 (13%)

Query: 7   RRYFQDENDVDATAPEIKLTKEDLLISDIHSLVNSYRDTNFTGRSIARIFHGIPSPNFPA 66
             Y  +  D+++   E+     + L   +          N    +    F GI +    A
Sbjct: 53  GIYTDEMVDLESCINELAEGDYEFLAGFVP---------NDAAAAYLVTFAGILNTETLA 103

Query: 67  IVFGRN 72
           I+F R+
Sbjct: 104 IIFDRD 109


>d1dhsa_ c.31.1.1 (A:) Deoxyhypusine synthase, DHS {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 361

 Score = 26.0 bits (57), Expect = 0.92
 Identities = 4/21 (19%), Positives = 10/21 (47%)

Query: 34 DIHSLVNSYRDTNFTGRSIAR 54
          +  +L+ ++  T F   +  R
Sbjct: 33 NYRALLEAFGTTGFQATNFGR 53


>d1u5la_ d.6.1.1 (A:) Prion protein domain {Red-eared slider
          turtle (Trachemys scripta) [TaxId: 34903]}
          Length = 107

 Score = 23.2 bits (50), Expect = 5.5
 Identities = 3/20 (15%), Positives = 9/20 (45%), Gaps = 3/20 (15%)

Query: 65 PAIVFGR---NRYWRSHMDQ 81
            + F R    ++W  + ++
Sbjct: 19 MRMNFDRPEERQWWNENSNR 38


>d1y0pa3 d.168.1.1 (A:362-504) Flavocytochrome c3 (respiratory
           fumarate reductase) {Shewanella frigidimarina [TaxId:
           56812]}
          Length = 143

 Score = 23.2 bits (49), Expect = 6.2
 Identities = 8/27 (29%), Positives = 8/27 (29%)

Query: 58  GIPSPNFPAIVFGRNRYWRSHMDQDFG 84
           GI        V   N    S  D DF 
Sbjct: 94  GIDGKALTETVARYNSLVSSGKDTDFE 120


>d2j5wa1 b.6.1.3 (A:1-192) Ceruloplasmin {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 192

 Score = 23.1 bits (49), Expect = 6.4
 Identities = 9/50 (18%), Positives = 14/50 (28%), Gaps = 6/50 (12%)

Query: 42  YRDTNFTGRSIARIFHGIPSP------NFPAIVFGRNRYWRSHMDQDFGL 85
           Y D  F       ++ G   P           V  +N   R +     G+
Sbjct: 56  YTDETFRTTIEKPVWLGFLGPIIKAETGDKVYVHLKNLASRPYTFHSHGI 105


>d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate
          dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId:
          5724]}
          Length = 362

 Score = 23.6 bits (50), Expect = 6.6
 Identities = 9/47 (19%), Positives = 13/47 (27%), Gaps = 8/47 (17%)

Query: 22 EIKLTKEDLLISDIHSLVNSYRD--------TNFTGRSIARIFHGIP 60
          E   T  + L+    S V+              F     + I   IP
Sbjct: 6  EPCHTFNEYLLIPGLSTVDCIPSNVNLSTPLVKFQKGQQSEINLKIP 52


>d2p5zx2 b.106.1.1 (X:15-201) Hypothetical protein c3393
          {Escherichia coli o6 [TaxId: 217992]}
          Length = 187

 Score = 23.0 bits (49), Expect = 7.5
 Identities = 8/45 (17%), Positives = 19/45 (42%)

Query: 15 DVDATAPEIKLTKEDLLISDIHSLVNSYRDTNFTGRSIARIFHGI 59
          D+  T+ +  +  E +L+ D    + +        ++  R  HG+
Sbjct: 30 DIQFTSSDKAIAPESVLMQDGAFSLTAPPVQGMPVQTALRTLHGV 74


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.140    0.420 

Gapped
Lambda     K      H
   0.267   0.0713    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 379,399
Number of extensions: 15780
Number of successful extensions: 84
Number of sequences better than 10.0: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 15
Length of query: 98
Length of database: 2,407,596
Length adjustment: 60
Effective length of query: 38
Effective length of database: 1,583,796
Effective search space: 60184248
Effective search space used: 60184248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (21.9 bits)