BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4190
(90 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4IHC|A Chain A, Crystal Structure Of Probable Mannonate Dehydratase
Dd703_0947 (target Efi-502222) From Dickeya Dadantii
Ech703
pdb|4IHC|B Chain B, Crystal Structure Of Probable Mannonate Dehydratase
Dd703_0947 (target Efi-502222) From Dickeya Dadantii
Ech703
pdb|4IHC|C Chain C, Crystal Structure Of Probable Mannonate Dehydratase
Dd703_0947 (target Efi-502222) From Dickeya Dadantii
Ech703
pdb|4IHC|D Chain D, Crystal Structure Of Probable Mannonate Dehydratase
Dd703_0947 (target Efi-502222) From Dickeya Dadantii
Ech703
pdb|4IHC|E Chain E, Crystal Structure Of Probable Mannonate Dehydratase
Dd703_0947 (target Efi-502222) From Dickeya Dadantii
Ech703
pdb|4IHC|F Chain F, Crystal Structure Of Probable Mannonate Dehydratase
Dd703_0947 (target Efi-502222) From Dickeya Dadantii
Ech703
pdb|4IHC|G Chain G, Crystal Structure Of Probable Mannonate Dehydratase
Dd703_0947 (target Efi-502222) From Dickeya Dadantii
Ech703
pdb|4IHC|H Chain H, Crystal Structure Of Probable Mannonate Dehydratase
Dd703_0947 (target Efi-502222) From Dickeya Dadantii
Ech703
Length = 440
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 4 MEAEHNVRGRLEKAPAFHQCPSCLF--EDNQKGKLTRHLLSCAKKYRPERNQVRKGEGPL 61
+E E N+R R+E+ + +C ++ KL L+ AK +P+R+ K G
Sbjct: 157 VEVEDNIRARMEEGYQYVRCQMGMYGGAGTDDLKLIATQLARAKNIQPKRSPRSKTPGIY 216
Query: 62 F 62
F
Sbjct: 217 F 217
>pdb|3TW9|A Chain A, Crystal Structure Of Gluconate Dehydratase (Target
Efi-501679) From Salmonella Enterica Subsp. Enterica
Serovar Enteritidis Str. P125109
pdb|3TW9|B Chain B, Crystal Structure Of Gluconate Dehydratase (Target
Efi-501679) From Salmonella Enterica Subsp. Enterica
Serovar Enteritidis Str. P125109
pdb|3TW9|C Chain C, Crystal Structure Of Gluconate Dehydratase (Target
Efi-501679) From Salmonella Enterica Subsp. Enterica
Serovar Enteritidis Str. P125109
pdb|3TW9|D Chain D, Crystal Structure Of Gluconate Dehydratase (Target
Efi-501679) From Salmonella Enterica Subsp. Enterica
Serovar Enteritidis Str. P125109
pdb|3TWA|A Chain A, Crystal Structure Of Gluconate Dehydratase (Target
Efi-501679) From Salmonella Enterica Subsp. Enterica
Serovar Enteritidis Str. P125109 Complexed With
Magnesium And Glycerol
pdb|3TWA|B Chain B, Crystal Structure Of Gluconate Dehydratase (Target
Efi-501679) From Salmonella Enterica Subsp. Enterica
Serovar Enteritidis Str. P125109 Complexed With
Magnesium And Glycerol
pdb|3TWA|C Chain C, Crystal Structure Of Gluconate Dehydratase (Target
Efi-501679) From Salmonella Enterica Subsp. Enterica
Serovar Enteritidis Str. P125109 Complexed With
Magnesium And Glycerol
pdb|3TWA|D Chain D, Crystal Structure Of Gluconate Dehydratase (Target
Efi-501679) From Salmonella Enterica Subsp. Enterica
Serovar Enteritidis Str. P125109 Complexed With
Magnesium And Glycerol
pdb|3TWA|E Chain E, Crystal Structure Of Gluconate Dehydratase (Target
Efi-501679) From Salmonella Enterica Subsp. Enterica
Serovar Enteritidis Str. P125109 Complexed With
Magnesium And Glycerol
pdb|3TWB|A Chain A, Crystal Structure Of Gluconate Dehydratase (Target
Efi-501679) From Salmonella Enterica Subsp. Enterica
Serovar Enteritidis Str. P125109 Complexed With
Magnesium And Gluconic Acid
pdb|3TWB|B Chain B, Crystal Structure Of Gluconate Dehydratase (Target
Efi-501679) From Salmonella Enterica Subsp. Enterica
Serovar Enteritidis Str. P125109 Complexed With
Magnesium And Gluconic Acid
pdb|3TWB|C Chain C, Crystal Structure Of Gluconate Dehydratase (Target
Efi-501679) From Salmonella Enterica Subsp. Enterica
Serovar Enteritidis Str. P125109 Complexed With
Magnesium And Gluconic Acid
pdb|3TWB|D Chain D, Crystal Structure Of Gluconate Dehydratase (Target
Efi-501679) From Salmonella Enterica Subsp. Enterica
Serovar Enteritidis Str. P125109 Complexed With
Magnesium And Gluconic Acid
pdb|3TWB|E Chain E, Crystal Structure Of Gluconate Dehydratase (Target
Efi-501679) From Salmonella Enterica Subsp. Enterica
Serovar Enteritidis Str. P125109 Complexed With
Magnesium And Gluconic Acid
Length = 442
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 4 MEAEHNVRGRLEKAPAFHQCPSCLF--EDNQKGKLTRHLLSCAKKYRPERNQVRKGEGPL 61
+E E N+R R+E+ + +C ++ KL L+ AK +P+R+ K G
Sbjct: 159 VEVEDNIRARMEEGYQYVRCQMGMYGGAGTDDLKLIATQLARAKNIQPKRSPRSKTPGIY 218
Query: 62 F 62
F
Sbjct: 219 F 219
>pdb|2OU2|A Chain A, Acetyltransferase Domain Of Human Hiv-1 Tat Interacting
Protein, 60kda, Isoform 3
Length = 280
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 19/51 (37%)
Query: 14 LEKAPAFHQCPSCLFEDNQKGKLTRHLLSCAKKYRPERNQVRKGEGPLFTI 64
L P + C CL L RHL C ++ P RKG F I
Sbjct: 28 LTTLPVLYLCEFCLKYGRSLKCLQRHLTKCDLRHPPGNEIYRKGTISFFEI 78
>pdb|2ZKR|FF Chain f, Structure Of A Mammalian Ribosomal 60s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 266
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 13 RLEKAPAFHQCPSCLFEDNQKGKLTRHLLSCAKKYRPERNQVRK 56
RL+ PA +Q L D Q LL A KYRPE Q +K
Sbjct: 73 RLKVPPAINQFTQAL--DRQTAT---QLLKLAHKYRPETKQEKK 111
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,705,244
Number of Sequences: 62578
Number of extensions: 93584
Number of successful extensions: 217
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 216
Number of HSP's gapped (non-prelim): 4
length of query: 90
length of database: 14,973,337
effective HSP length: 57
effective length of query: 33
effective length of database: 11,406,391
effective search space: 376410903
effective search space used: 376410903
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)