RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy4190
         (90 letters)



>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed.
          Length = 542

 Score = 25.5 bits (57), Expect = 4.2
 Identities = 11/32 (34%), Positives = 15/32 (46%)

Query: 36  LTRHLLSCAKKYRPERNQVRKGEGPLFTIAED 67
           LT   +S  +   P   +V +   PL  IAED
Sbjct: 221 LTDKKISSLQDLLPLLEKVAQSGKPLLIIAED 252


>gnl|CDD|173359 PTZ00064, PTZ00064, histone acetyltransferase; Provisional.
          Length = 552

 Score = 25.4 bits (55), Expect = 5.6
 Identities = 14/45 (31%), Positives = 19/45 (42%)

Query: 20  FHQCPSCLFEDNQKGKLTRHLLSCAKKYRPERNQVRKGEGPLFTI 64
            H C  CL     + +L RHL  C  ++ P     RK    +F I
Sbjct: 280 LHFCEYCLDFFCFEDELIRHLSRCQLRHPPGNEIYRKDNISVFEI 324


>gnl|CDD|226347 COG3826, COG3826, Uncharacterized protein conserved in bacteria
           [Function unknown].
          Length = 236

 Score = 24.8 bits (54), Expect = 7.2
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 5/43 (11%)

Query: 48  RPERNQVRKGEGPLFTIAEDSGFCWVLQFSLSYTSVPLRSGLS 90
           RP    +R+G+G +F + +       +Q +  +  VPLR G+S
Sbjct: 181 RPTVVPLRQGDGVVFAVRDRP-----VQGTRGWYRVPLRHGVS 218


>gnl|CDD|185611 PTZ00428, PTZ00428, 60S ribosomal protein L4; Provisional.
          Length = 381

 Score = 24.6 bits (54), Expect = 7.8
 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 27  LFEDNQKGKLTRHLLSCAKKYRPERNQVRKGEGPLFTIAEDSG 69
            F+D  +   ++ + +   K R  R  +R+  GPL   A D+G
Sbjct: 175 AFDDVNRVNDSKKIRAGKGKMRNRRYVMRR--GPLVVYANDNG 215


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.322    0.135    0.428 

Gapped
Lambda     K      H
   0.267   0.0653    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,314,507
Number of extensions: 323832
Number of successful extensions: 231
Number of sequences better than 10.0: 1
Number of HSP's gapped: 231
Number of HSP's successfully gapped: 9
Length of query: 90
Length of database: 10,937,602
Length adjustment: 58
Effective length of query: 32
Effective length of database: 8,365,070
Effective search space: 267682240
Effective search space used: 267682240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.4 bits)