RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy4190
         (90 letters)



>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 31.8 bits (71), Expect = 0.014
 Identities = 6/20 (30%), Positives = 11/20 (55%)

Query: 50 ERNQVRKGEGPLFTIAEDSG 69
          E+  ++K +  L   A+DS 
Sbjct: 18 EKQALKKLQASLKLYADDSA 37



 Score = 29.9 bits (66), Expect = 0.075
 Identities = 8/36 (22%), Positives = 9/36 (25%), Gaps = 11/36 (30%)

Query: 29 EDNQKGKLTRHLLSCAKKYRPERNQVRKGEGPLFTI 64
          E     KL   L    K Y  +         P   I
Sbjct: 18 EKQALKKLQASL----KLYADD-------SAPALAI 42


>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
          transcription factor, DNA-binding, DNA-directed RNA
          polymerase; 4.30A {Saccharomyces cerevisiae}
          Length = 197

 Score = 25.4 bits (55), Expect = 2.9
 Identities = 10/47 (21%), Positives = 13/47 (27%), Gaps = 22/47 (46%)

Query: 23 CPSC------LFEDNQKGKLTRHLLSCAKK----------YRPE-RN 52
          CP C      + E   +G +      CA             R E R 
Sbjct: 24 CPECKVYPPKIVERFSEGDVV-----CALCGLVLSDKLVDTRSEWRT 65


>3dy5_A Allene oxide synthase-lipoxygenase protein; fusion protein,
           BI-functional enzyme, dioxygenase, fatty ACI
           biosynthesis, heme, iron; HET: HEM; 3.51A {Plexaura
           homomalla}
          Length = 1066

 Score = 24.8 bits (53), Expect = 4.9
 Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 8/62 (12%)

Query: 13  RLEKAPAFHQCPSCLFEDNQKGKLTRHLLSCAKKYRPERNQVRKGEGPLFTIAEDSGFCW 72
             E    +   P  LF  N+ G L    +   ++  PE         P++T  E++   W
Sbjct: 686 HDEADIRYCAAPLALFYVNKLGHLMPIAIQINQEPGPEN--------PIWTPHEENEHDW 737

Query: 73  VL 74
           ++
Sbjct: 738 MM 739


>3v98_A Arachidonate 5-lipoxygenase; dioxygenase, oxidoreductase; 2.07A
           {Homo sapiens} PDB: 3v99_A* 3o8y_A 3v92_B
          Length = 691

 Score = 24.9 bits (53), Expect = 5.3
 Identities = 12/73 (16%), Positives = 22/73 (30%), Gaps = 9/73 (12%)

Query: 2   YHMEAEHNVRGRLEKAPAFHQCPSCLFEDNQKGKLTRHLLSCAKKYRPERNQVRKGEGPL 61
           + +    +          F   P CL   N   K+    +   +    E         P+
Sbjct: 304 FELLDGIDANKTDPCTLQFLAAPICLLYKNLANKIVPIAIQLNQIPGDEN--------PI 355

Query: 62  FTIAEDSGFCWVL 74
           F    D+ + W+L
Sbjct: 356 FL-PSDAKYDWLL 367


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.322    0.135    0.428 

Gapped
Lambda     K      H
   0.267   0.0461    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,283,136
Number of extensions: 58887
Number of successful extensions: 101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 9
Length of query: 90
Length of database: 6,701,793
Length adjustment: 57
Effective length of query: 33
Effective length of database: 5,110,296
Effective search space: 168639768
Effective search space used: 168639768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.1 bits)