BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4191
(443 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Y113|NELFB_DROME Negative elongation factor B OS=Drosophila melanogaster GN=NELF-B
PE=1 SV=1
Length = 594
Score = 511 bits (1316), Expect = e-144, Method: Compositional matrix adjust.
Identities = 275/427 (64%), Positives = 313/427 (73%), Gaps = 71/427 (16%)
Query: 1 MLKKSFPLVRVKQLRPVVMAILRNTTHIDDKYLRVLVRDRELYKDTDTEVKRQIWKDNQS 60
+L KSFP+VRVK LRPVVMAILRNT HIDDKYL++LVRDRELY DTDTEVKRQIW+DNQS
Sbjct: 105 LLVKSFPVVRVKSLRPVVMAILRNTQHIDDKYLKILVRDRELYADTDTEVKRQIWRDNQS 164
Query: 61 LFGDEVSPLLSQYIREKENILFDHHNLTNLFFFPTPKEFKEPKLDSQVVTKFVPALMSLM 120
LFGDEVSPLLSQYIREKE+ILFDH NL NLFF PTP
Sbjct: 165 LFGDEVSPLLSQYIREKEHILFDHTNLNNLFFHPTP------------------------ 200
Query: 121 VDDQVRALNSKMPPDERESAITIIEHSGRFNRIGEVVQKLAHMIGSSVKLYDMVLQFLRT 180
+ R GEVVQKLA+MIG+SVKLYDMVLQFLRT
Sbjct: 201 ----------------------------KVRRQGEVVQKLANMIGTSVKLYDMVLQFLRT 232
Query: 181 LFLRTHNVHYCTLRAELLMALHDLEIQDIISVDPCHKFTWCLDACIREKNVDIKRSRELQ 240
LFLRT NVHYCTLRAELLMALHDLE+Q+IIS+DPCHKFTWCLDACIREKNVDIKRSRELQ
Sbjct: 233 LFLRTRNVHYCTLRAELLMALHDLEVQEIISIDPCHKFTWCLDACIREKNVDIKRSRELQ 292
Query: 241 GFLDSIKRGHEQVLGDLSMTLCDPYAINFLATSAMKILHYLINNEALPRENTVLVLLLRM 300
GFLD+IKRG EQVLGDLSMTLCDPYAINFLATSA+KILH+LINNE +PR+N +L+LLLRM
Sbjct: 293 GFLDNIKRGQEQVLGDLSMTLCDPYAINFLATSAIKILHHLINNEGMPRDNQILILLLRM 352
Query: 301 LALGLSAWVMIDTQ-------GGNILIEIFRSCFKLYDMVLQFLRTLFLR---------- 343
LALGLSAWVMID+Q ++ + + L MV R+L +
Sbjct: 353 LALGLSAWVMIDSQDFKEPKLDCQVVTKFLPALMSL--MVDDQCRSLHAKLPPDERESAL 410
Query: 344 THNVHYWPVPDAVQAYVQESSVACIISMYYTLHTARSRDRVGLMRVLGVLATSESDRAFD 403
T H P PDAV+AY+QESSVA I++MYYTLHTAR +DRVG++RVL +L+ + DRA++
Sbjct: 411 TTIEHSGPAPDAVEAYIQESSVASILAMYYTLHTARLKDRVGVLRVLAILSACKDDRAYE 470
Query: 404 DPFLHFL 410
DPFLH L
Sbjct: 471 DPFLHSL 477
>sp|Q8C4Y3|NELFB_MOUSE Negative elongation factor B OS=Mus musculus GN=Cobra1 PE=2 SV=2
Length = 580
Score = 344 bits (883), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 195/431 (45%), Positives = 263/431 (61%), Gaps = 78/431 (18%)
Query: 1 MLKKSFPLVRVKQLRPVVMAILRNTTHIDDKYLRVLVRDRELYKDTDTEVKRQIWKDNQS 60
+L+KSF LV++ L+PVVM ++++ + +K L++++ D+ELY+ EVKRQIW+DNQ+
Sbjct: 96 LLEKSFSLVKMPSLQPVVMCVMKHLPKVPEKKLKLVMADKELYRACAVEVKRQIWQDNQA 155
Query: 61 LFGDEVSPLLSQYIREKENILFDHH-NLTNLFFFPTPKEFKEPKLDSQVVTKFVPALMSL 119
LFGDEVSPLL QYI EKE+ LF ++ + FF P
Sbjct: 156 LFGDEVSPLLKQYILEKESALFSTELSVLHNFFSP------------------------- 190
Query: 120 MVDDQVRALNSKMPPDERESAITIIEHSGRFNRIGEVVQKLAHMIGSSVKLYDMVLQFLR 179
S + R GEVVQKL M+G +VKLYDMVLQFLR
Sbjct: 191 ---------------------------SPKTRRQGEVVQKLTQMVGKNVKLYDMVLQFLR 223
Query: 180 TLFLRTHNVHYCTLRAELLMALHDLEIQDIISVDPCHKFTWCLDACIREKNVDIKRSREL 239
TLFLRT NVHYCTLRAELLM+LHDL++ DI +VDPCHKFTWCLDACIRE+ VD KR+REL
Sbjct: 224 TLFLRTRNVHYCTLRAELLMSLHDLDVSDICTVDPCHKFTWCLDACIRERFVDSKRAREL 283
Query: 240 QGFLDSIKRGHEQVLGDLSMTLCDPYAINFLATSAMKILHYLINNEALPRENTVLVLLLR 299
QGFLD +K+G EQVLGDLSM LCDP+AIN L+ S ++ L L++ E LPR++ L+LLLR
Sbjct: 284 QGFLDGVKKGQEQVLGDLSMILCDPFAINTLSLSTIRHLQELVSQETLPRDSPDLLLLLR 343
Query: 300 MLALGLSAWVMIDTQGGNILIEIFRSCFKLYDMVLQFLRTLFLR-----THNVHY----- 349
+LALG AW +ID+Q +F+ +++ +FL L T NV
Sbjct: 344 LLALGQGAWDLIDSQ-------VFKEPKMEAELITKFLPMLMSLVVDDFTFNVDQKLPAE 396
Query: 350 ------WP--VPDAVQAYVQESSVACIISMYYTLHTARSRDRVGLMRVLGVLATSESDRA 401
+P +P++ ++QE +AC + +YY LH + R++ L+R+L L + D A
Sbjct: 397 EKASVTYPNTLPESFTKFLQEQRMACEVGLYYVLHITKQRNKNALLRLLPGLVETFGDLA 456
Query: 402 FDDPFLHFLSS 412
F D FLH L+
Sbjct: 457 FSDIFLHLLTG 467
>sp|Q8WX92|NELFB_HUMAN Negative elongation factor B OS=Homo sapiens GN=COBRA1 PE=1 SV=1
Length = 580
Score = 343 bits (880), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 197/431 (45%), Positives = 264/431 (61%), Gaps = 78/431 (18%)
Query: 1 MLKKSFPLVRVKQLRPVVMAILRNTTHIDDKYLRVLVRDRELYKDTDTEVKRQIWKDNQS 60
+L+KSF LV++ L+PVVM ++++ + +K L++++ D+ELY+ EVKRQIW+DNQ+
Sbjct: 96 LLEKSFSLVKMPSLQPVVMCVMKHLPKVPEKKLKLVMADKELYRACAVEVKRQIWQDNQA 155
Query: 61 LFGDEVSPLLSQYIREKENILFDHH-NLTNLFFFPTPKEFKEPKLDSQVVTKFVPALMSL 119
LFGDEVSPLL QYI EKE+ LF ++ + FF P
Sbjct: 156 LFGDEVSPLLKQYILEKESALFSTELSVLHNFFSP------------------------- 190
Query: 120 MVDDQVRALNSKMPPDERESAITIIEHSGRFNRIGEVVQKLAHMIGSSVKLYDMVLQFLR 179
S + R GEVVQ+L M+G +VKLYDMVLQFLR
Sbjct: 191 ---------------------------SPKTRRQGEVVQRLTRMVGKNVKLYDMVLQFLR 223
Query: 180 TLFLRTHNVHYCTLRAELLMALHDLEIQDIISVDPCHKFTWCLDACIREKNVDIKRSREL 239
TLFLRT NVHYCTLRAELLM+LHDL++ +I +VDPCHKFTWCLDACIRE+ VD KR+REL
Sbjct: 224 TLFLRTRNVHYCTLRAELLMSLHDLDVGEICTVDPCHKFTWCLDACIRERFVDSKRAREL 283
Query: 240 QGFLDSIKRGHEQVLGDLSMTLCDPYAINFLATSAMKILHYLINNEALPRENTVLVLLLR 299
QGFLD +K+G EQVLGDLSM LCDP+AIN LA S ++ L L+ E LPR++ L+LLLR
Sbjct: 284 QGFLDGVKKGQEQVLGDLSMILCDPFAINTLALSTVRHLQELVGQETLPRDSPDLLLLLR 343
Query: 300 MLALGLSAWVMIDTQGGNILIEIFRSCFKLYDMVLQFLRTL--FL---RTHNVHY----- 349
+LALG AW MID+Q +F+ +++ +FL L FL T NV
Sbjct: 344 LLALGQGAWDMIDSQ-------VFKEPKMEVELITRFLPMLMSFLVDDYTFNVDQKLPAE 396
Query: 350 ------WP--VPDAVQAYVQESSVACIISMYYTLHTARSRDRVGLMRVLGVLATSESDRA 401
+P +P++ ++QE +AC + +YY LH + R++ L+R+L L + D A
Sbjct: 397 EKAPVSYPNTLPESFTKFLQEQRMACEVGLYYVLHITKQRNKNALLRLLPGLVETFGDLA 456
Query: 402 FDDPFLHFLSS 412
F D FLH L+
Sbjct: 457 FGDIFLHLLTG 467
>sp|Q7U6R7|DNAK1_SYNPX Chaperone protein dnaK1 OS=Synechococcus sp. (strain WH8102)
GN=dnaK1 PE=3 SV=1
Length = 662
Score = 36.6 bits (83), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 84/232 (36%), Gaps = 62/232 (26%)
Query: 220 WCLDACIREKNVDIKRSRELQGFLDSIKRGHEQVLGDLSMTLCDPYAINFLATSAMKILH 279
W DA E VD++R R+ L + E+ +LS L P ++ F+AT LH
Sbjct: 234 WIADAFQAEHGVDLRRDRQA---LQRLTEAAEKAKQELSGVLTTPISLPFIATGENGPLH 290
Query: 280 YLINNEALPRENTVLVLLLRML-----ALGLSAWVMIDTQGGNILIEIFRSCFKLYDMVL 334
N + E LL R+L AL S W D I + MV
Sbjct: 291 VETNLDRSTFEGLCPDLLDRLLMPVQSALRDSGWAADD-----IDDVVLVGGATRMPMVQ 345
Query: 335 QFLRTLFLRTHNVHYWPVP-DAVQAYVQESSVACIISMYYTLHTARSRDRV--------- 384
Q +RTL VP D Q+ + VA ++ + T RD +
Sbjct: 346 QLVRTL-----------VPLDPCQSVNPDEVVAIGAAVQAGILTGELRDLLLNDVTPLSL 394
Query: 385 ------GLMRVL------------GVLATSESDRAFDDPFLHFLSSYEISLW 418
GLMRVL V +TSE ++ SS EI +W
Sbjct: 395 GLETVGGLMRVLIPRNTPIPVRQSDVFSTSEPNQ----------SSVEIHVW 436
>sp|P11717|MPRI_HUMAN Cation-independent mannose-6-phosphate receptor OS=Homo sapiens
GN=IGF2R PE=1 SV=3
Length = 2491
Score = 33.9 bits (76), Expect = 2.8, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 13/60 (21%)
Query: 93 FPTPKEFKEPKLDSQVVTKFVPALMSLMVDDQVRALNSKMPPDERESAITIIE---HSGR 149
P P++ KE + + + TK V AL SL DDQ D + +TI E HSGR
Sbjct: 2376 LPPPRQGKEGQENGHITTKSVKALSSLHGDDQ----------DSEDEVLTIPEVKVHSGR 2425
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.139 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 154,563,092
Number of Sequences: 539616
Number of extensions: 6114498
Number of successful extensions: 19445
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 19428
Number of HSP's gapped (non-prelim): 16
length of query: 443
length of database: 191,569,459
effective HSP length: 121
effective length of query: 322
effective length of database: 126,275,923
effective search space: 40660847206
effective search space used: 40660847206
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 63 (28.9 bits)