Query psy4191
Match_columns 443
No_of_seqs 51 out of 53
Neff 4.1
Searched_HMMs 46136
Date Fri Aug 16 19:10:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4191.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4191hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06209 COBRA1: Cofactor of B 100.0 1E-128 2E-133 1003.1 35.2 379 11-442 1-397 (474)
2 PF06209 COBRA1: Cofactor of B 96.0 0.0047 1E-07 66.2 3.0 54 95-150 251-304 (474)
3 PLN03085 nucleobase:cation sym 27.1 65 0.0014 32.1 3.4 24 109-139 56-79 (221)
4 cd07667 BAR_SNX30 The Bin/Amph 24.5 1.6E+02 0.0035 29.6 5.7 99 152-259 55-164 (240)
5 PF08991 DUF1903: Domain of un 22.6 62 0.0013 26.5 1.9 33 212-244 1-33 (67)
6 COG1155 NtpA Archaeal/vacuolar 21.2 2.6E+02 0.0057 31.6 6.8 84 109-199 420-520 (588)
7 PF13730 HTH_36: Helix-turn-he 19.6 2.6E+02 0.0056 20.5 4.6 48 133-180 4-51 (55)
8 COG3357 Predicted transcriptio 18.1 2.7E+02 0.0058 24.6 4.9 42 136-181 4-47 (97)
9 COG2024 Phenylalanyl-tRNA synt 13.7 3.8E+02 0.0082 29.5 5.7 22 164-186 43-64 (536)
10 PRK04330 hypothetical protein; 13.5 1.3E+02 0.0028 26.1 1.9 23 31-57 58-80 (88)
No 1
>PF06209 COBRA1: Cofactor of BRCA1 (COBRA1); InterPro: IPR010405 This family consists of several cofactor of BRCA1 (COBRA1) like proteins. It is thought that COBRA1 along with BRCA1 is involved in chromatin unfolding. COBRA1 is recruited to the chromosome site by the first BRCT repeat of BRCA1, and is itself sufficient to induce chromatin unfolding. BRCA1 mutations that enhance chromatin unfolding also increase its affinity for, and recruitment of, COBRA1. It is thought that that reorganisation of higher levels of chromatin structure is an important regulated step in BRCA1-mediated nuclear functions [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=100.00 E-value=1e-128 Score=1003.12 Aligned_cols=379 Identities=56% Similarity=0.883 Sum_probs=370.9
Q ss_pred cCchhHHHHHHHhcCCCCcHHHHHHHhhCHhHhhhcCHHHHHHHHhcChhhHhhhhhHHHHHHHHHhhhcccc-cccccc
Q psy4191 11 VKQLRPVVMAILRNTTHIDDKYLRVLVRDRELYKDTDTEVKRQIWKDNQSLFGDEVSPLLSQYIREKENILFD-HHNLTN 89 (443)
Q Consensus 11 ~~eLrpvvm~vL~~~~~iP~~yL~~L~~d~~Ly~~~pveVkRQIW~~n~~lF~~~v~Pll~~Yi~e~~~~l~~-~~~~~~ 89 (443)
+|+||||||+||+++|+||++||++|++|++||++||+|||||||+.|+++|+|||+|+++||++||++++++ +.+.++
T Consensus 1 ~~~lrpvvm~vl~~~~~vp~~~L~~l~~d~~Ly~~~~~~VkRqIW~~~~~lF~~~v~Pll~~Y~~~~~~~l~~~~~~~~~ 80 (474)
T PF06209_consen 1 VPELRPVVMAVLKHLPKVPEKYLKKLVADPELYDDCPLEVKRQIWQDNQSLFGDEVSPLLNQYIEEKETILFSADMSVSN 80 (474)
T ss_pred CcchhhHHHHHHhhCCCCCHHHHHHHhcCHHHHHhCCHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999 788889
Q ss_pred ccccCCCcCCCCCCcccchhhccchhhhhhhhhhHHhhhcCCCCcchhhhhHHHHhccCccccchHHHHHHHHHhcCCHH
Q psy4191 90 LFFFPTPKEFKEPKLDSQVVTKFVPALMSLMVDDQVRALNSKMPPDERESAITIIEHSGRFNRIGEVVQKLAHMIGSSVK 169 (443)
Q Consensus 90 ~f~~~s~~~~kep~~ds~~~s~~vP~~~~~~~d~~~~a~~~~~p~~~R~~~~~~i~~sg~~Rr~~~~lqkL~~MiG~s~~ 169 (443)
+||+++|+. |||++++|||++|||+|++
T Consensus 81 ~f~~~~~k~----------------------------------------------------rr~~~~vq~l~~miG~~~~ 108 (474)
T PF06209_consen 81 SFFSPSPKR----------------------------------------------------RRQGEVVQKLVQMIGKSVK 108 (474)
T ss_pred cccCCCHHH----------------------------------------------------HhccHHHHHHHHHhCCCHH
Confidence 999998877 9999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCccchhhHHHHHHHhcccccccccccCccchhhhhHHHHhhhcccchHhHHHHHHHHHHhhcC
Q psy4191 170 LYDMVLQFLRTLFLRTHNVHYCTLRAELLMALHDLEIQDIISVDPCHKFTWCLDACIREKNVDIKRSRELQGFLDSIKRG 249 (443)
Q Consensus 170 LY~~~L~~lR~~f~~t~nv~yCtLR~eLLMalhd~~i~~i~~~DPcHKfaWcLDAciRd~~lD~kr~~ELq~~L~~~Krg 249 (443)
||+|++++||++|++|+|+||||||+|||||+||++++|||++||||||||||||||||+.||+||++|||+||+++|+|
T Consensus 109 LY~~~l~~lr~~f~~~~~~~yc~lR~~llm~~hd~~~~~i~~~D~ch~faw~ldac~rd~~id~~~~~el~~~l~~~~~~ 188 (474)
T PF06209_consen 109 LYDMVLQFLRTLFLRTGNVHYCSLRAELLMALHDAEIDEICSSDPCHKFAWCLDACIRDKNIDGRRIRELQGFLESIKKG 188 (474)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhcchhhhhcCCchHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccchhhhhhcChhHHHHHHHHHHHHHHHHhcccCCCCcchhHHHHHHHHhcccchhhhhhccchh------HHHHHH
Q psy4191 250 HEQVLGDLSMTLCDPYAINFLATSAMKILHYLINNEALPRENTVLVLLLRMLALGLSAWVMIDTQGGN------ILIEIF 323 (443)
Q Consensus 250 ~~~vLgDlaMil~DP~vi~~L~~s~ik~L~~~v~~~~LPrd~~~l~~LlrLL~LG~~a~~mi~~q~f~------~ii~~F 323 (443)
++|||||+|||||||+|+||||++++|+|+++|++++||||+++|.+|+|||+||+|||+||++|+|+ +|+++|
T Consensus 189 ~eqvLGDlaMiL~DP~a~n~L~~s~vk~L~~lv~~~~LPRd~~~L~~LlrLL~LG~~A~~Mi~~Q~fkeP~ld~~ivtkF 268 (474)
T PF06209_consen 189 QEQVLGDLAMILCDPFAINTLCRSIVKQLQELVNREALPRDSPDLRLLLRLLSLGLSAWDMIRSQDFKEPKLDKEIVTKF 268 (474)
T ss_pred CCCcchhHHHHhcCHHHHHHHHHHHHHHHHHHHhccCCCCCChhhHHHHHHHHhhcchHHHHHhcccCCCCcchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 999999
Q ss_pred HHHHhhhhhHHHHHhhhccccc--------ccCCCCCcHHHHHHHHhchhHHHHHHHHHHHHhhcCChhHHHHHHHhhhc
Q psy4191 324 RSCFKLYDMVLQFLRTLFLRTH--------NVHYWPVPDAVQAYVQESSVACIISMYYTLHTARSRDRVGLMRVLGVLAT 395 (443)
Q Consensus 324 lP~l~~~~mv~d~~r~~~~kl~--------~~~~~~~~~~~~~~i~~~~va~~l~~~Y~L~~~~~~~~~~l~r~L~~l~~ 395 (443)
||+++ ++||||++|++++|++ ...+++++++|.+||++|++|+++++||+||++++||+++++|+||++++
T Consensus 269 LP~L~-slmvdd~~r~~~~kl~~de~~~a~~~~~~~l~~~f~~~l~~~~va~~l~l~YiLh~~~~rd~~al~rlLp~L~~ 347 (474)
T PF06209_consen 269 LPLLM-SLMVDDQLRDVDAKLPDDERAEAITSISSTLPDAFEAYLRESRVARKLALYYILHLLKKRDKNALMRLLPALVE 347 (474)
T ss_pred HHHHH-HHHHHHHHHHHhccCCccccccccccCCCccHHHHHHHHHhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHhhh
Confidence 99999 9999999999999985 12378999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCChhHHHHHHHHhhccc---hhhHHHHHHHhhcccCCCcccCC
Q psy4191 396 SESDRAFDDPFLHFLSSYEISLWT---SLNWQRVWLRHYFQTSPKRNFNV 442 (443)
Q Consensus 396 ~~~~~~~~d~flh~l~~~l~~l~~---~e~f~~~~f~~ffl~~~~~~~~v 442 (443)
+++|.+|+|||+|+|+++|+.++| +|+||++||||||++|++++|||
T Consensus 348 ~~~d~~~~d~FlH~Lv~~L~~l~~ef~~e~fc~~vfD~FlL~~~~~~~~v 397 (474)
T PF06209_consen 348 CDDDSAFEDIFLHLLVSSLVQLSDEFSTEDFCTIVFDEFLLAGLSSKENV 397 (474)
T ss_pred hcccccccchHHHHHHHHHHhhHHhcCChhHHHHHHHHHHHHhcccchHH
Confidence 999999999999999999999999 99999999999999999999997
No 2
>PF06209 COBRA1: Cofactor of BRCA1 (COBRA1); InterPro: IPR010405 This family consists of several cofactor of BRCA1 (COBRA1) like proteins. It is thought that COBRA1 along with BRCA1 is involved in chromatin unfolding. COBRA1 is recruited to the chromosome site by the first BRCT repeat of BRCA1, and is itself sufficient to induce chromatin unfolding. BRCA1 mutations that enhance chromatin unfolding also increase its affinity for, and recruitment of, COBRA1. It is thought that that reorganisation of higher levels of chromatin structure is an important regulated step in BRCA1-mediated nuclear functions [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.97 E-value=0.0047 Score=66.25 Aligned_cols=54 Identities=59% Similarity=0.951 Sum_probs=48.5
Q ss_pred CCcCCCCCCcccchhhccchhhhhhhhhhHHhhhcCCCCcchhhhhHHHHhccCcc
Q psy4191 95 TPKEFKEPKLDSQVVTKFVPALMSLMVDDQVRALNSKMPPDERESAITIIEHSGRF 150 (443)
Q Consensus 95 s~~~~kep~~ds~~~s~~vP~~~~~~~d~~~~a~~~~~p~~~R~~~~~~i~~sg~~ 150 (443)
..|.||+|+.|....++|+|.+|+.|+|++.+..++++|.++|+++.+.+ +|+.
T Consensus 251 ~~Q~fkeP~ld~~ivtkFLP~L~slmvdd~~r~~~~kl~~de~~~a~~~~--~~~l 304 (474)
T PF06209_consen 251 RSQDFKEPKLDKEIVTKFLPLLMSLMVDDQLRDVDAKLPDDERAEAITSI--SSTL 304 (474)
T ss_pred HhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHhccCCccccccccccC--CCcc
Confidence 67899999999999999999999999999999999999999998877655 4444
No 3
>PLN03085 nucleobase:cation symporter-1; Provisional
Probab=27.10 E-value=65 Score=32.12 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=15.0
Q ss_pred hhccchhhhhhhhhhHHhhhcCCCCcchhhh
Q psy4191 109 VTKFVPALMSLMVDDQVRALNSKMPPDERES 139 (443)
Q Consensus 109 ~s~~vP~~~~~~~d~~~~a~~~~~p~~~R~~ 139 (443)
.+..+.+.|+.+-| -|+|||.|+.
T Consensus 56 ~~~~~~~~~~~~~~-------~~~~~~~~~~ 79 (221)
T PLN03085 56 APHRLSAVIDAVND-------RKLPPELRGR 79 (221)
T ss_pred cHHHHHHHHHHHhc-------ccCChhhccc
Confidence 44555555555443 3699999873
No 4
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=24.50 E-value=1.6e+02 Score=29.58 Aligned_cols=99 Identities=13% Similarity=0.220 Sum_probs=59.0
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcCCccchhhHHHHHHHhcccccccccccCccchhhhhHHHHhhh---
Q psy4191 152 RIGEVVQKLAHMIGSSVKLYDMVLQFLRTLFLRTHNVHYCTLRAELLMALHDLEIQDIISVDPCHKFTWCLDACIRE--- 228 (443)
Q Consensus 152 r~~~~lqkL~~MiG~s~~LY~~~L~~lR~~f~~t~nv~yCtLR~eLLMalhd~~i~~i~~~DPcHKfaWcLDAciRd--- 228 (443)
.-.+.+.+|-+=+|.-.+++.++.+--..+....++ +-+.+....--+=--.||.+.|+=|+|.|...
T Consensus 55 e~~ey~d~l~~~l~~ieki~~Rv~kr~~~l~~d~~e---------~~~~f~~ws~lE~~l~~~L~~~a~~~~~~s~~l~~ 125 (240)
T cd07667 55 AIGDYLDTFALKLGTIDRIAQRIIKEEIEYLVELRE---------YGPVYSTWSGLEGELAEPLEGVSACIGNCSTALEE 125 (240)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446778888888888888888887655554443322 22222222222222358999999999999875
Q ss_pred --cccc---hHhHHHHHHHHHHhhc---CCccccchhhh
Q psy4191 229 --KNVD---IKRSRELQGFLDSIKR---GHEQVLGDLSM 259 (443)
Q Consensus 229 --~~lD---~kr~~ELq~~L~~~Kr---g~~~vLgDlaM 259 (443)
...| ...++|+..+.+++|. -.+|...|.-.
T Consensus 126 l~~~~~~~yl~~Lke~~~Y~~slk~vlK~RdqkQ~d~E~ 164 (240)
T cd07667 126 LTEDMTEDFLPVLREYILYSESMKNVLKKRDQVQAEYEA 164 (240)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1121 1346666666666621 13566666554
No 5
>PF08991 DUF1903: Domain of unknown function (DUF1903); InterPro: IPR009069 The mature-T-cell-proliferation (MTCP1) putative oncogene was identified for its involvement in t(X:14)(q28;q11)-associated T-cell leukaemia []. MTCP1 is alternatively spliced to produce two completely distinct proteins: the small mitochondrial protein, p8MTCP1, and the protein p13MTCP1, which shows strong homology to another oncogene product, p14TCL1. While p13MTCP1 expression appears to be restricted to mature T-cell proliferation with t(X,14) translocations, the mitochondrial p8MTCP1 is expressed at low levels in most human tissues, and is over-expressed in the proliferating T-cells. The biological function of p8MTCP1 is still unknown, but it appears to play a role in oncogenesis. The structure of p8MTCP1 reveals a disulphide-rich, irregular array of three helices [].; PDB: 2HP8_A 1EI0_A 1HP8_A.
Probab=22.64 E-value=62 Score=26.51 Aligned_cols=33 Identities=24% Similarity=0.525 Sum_probs=26.3
Q ss_pred cCccchhhhhHHHHhhhcccchHhHHHHHHHHH
Q psy4191 212 VDPCHKFTWCLDACIREKNVDIKRSRELQGFLD 244 (443)
Q Consensus 212 ~DPcHKfaWcLDAciRd~~lD~kr~~ELq~~L~ 244 (443)
+||||+.|=-+=.|+..+.-|..+.......+.
T Consensus 1 ~~PC~~~Ac~iq~CL~~N~Yd~~kC~~~i~~l~ 33 (67)
T PF08991_consen 1 KDPCQKEACAIQKCLQRNNYDESKCQDYIDALY 33 (67)
T ss_dssp --TTHHHHHHHHHHHHHTTT-CCCTHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 589999999999999999999988887776663
No 6
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=21.22 E-value=2.6e+02 Score=31.59 Aligned_cols=84 Identities=25% Similarity=0.440 Sum_probs=51.6
Q ss_pred hhccchh-----hhhhhhhhHHhhhcCCCCcchhh---hhHHHHhccCccccchHHHHHHHHHhcC-----CHHHHHHHH
Q psy4191 109 VTKFVPA-----LMSLMVDDQVRALNSKMPPDERE---SAITIIEHSGRFNRIGEVVQKLAHMIGS-----SVKLYDMVL 175 (443)
Q Consensus 109 ~s~~vP~-----~~~~~~d~~~~a~~~~~p~~~R~---~~~~~i~~sg~~Rr~~~~lqkL~~MiG~-----s~~LY~~~L 175 (443)
..+|-|+ ++|...|+--.-...+++++.++ .+...+ .+ .+.+|++++++|. ..++-..+-
T Consensus 420 ~~rhfPaInwl~syS~Y~~~~~~~~~~~v~~~~~~~r~~a~~~L------q~-e~elqeiv~lVG~eal~e~~~~il~va 492 (588)
T COG1155 420 NRRHFPSINWLNSYSLYTEDLRSWYDENVSPEWGALRDQAMEIL------QR-ESELQEIVQLVGYDALPEKEKSILDVA 492 (588)
T ss_pred hcccCcccChHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHH------HH-HHHHHHHHHHhCccccchHHHHHHHHH
Confidence 4556665 35555665444455566666543 233222 12 2459999999994 345666677
Q ss_pred HHHHHHHhhcCCcc----chhhHHHHHH
Q psy4191 176 QFLRTLFLRTHNVH----YCTLRAELLM 199 (443)
Q Consensus 176 ~~lR~~f~~t~nv~----yCtLR~eLLM 199 (443)
..+|..|++-+--+ ||+...+-.|
T Consensus 493 ~~ire~fLqQnafd~vD~~~~~~kq~~m 520 (588)
T COG1155 493 RIIREDFLQQNAFDEIDAYCSLRKQYLM 520 (588)
T ss_pred HHHHHHHHhhcccCcccccCCHHHHHHH
Confidence 88899999987544 7766554443
No 7
>PF13730 HTH_36: Helix-turn-helix domain
Probab=19.59 E-value=2.6e+02 Score=20.53 Aligned_cols=48 Identities=13% Similarity=0.110 Sum_probs=31.9
Q ss_pred CcchhhhhHHHHhccCccccchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy4191 133 PPDERESAITIIEHSGRFNRIGEVVQKLAHMIGSSVKLYDMVLQFLRT 180 (443)
Q Consensus 133 p~~~R~~~~~~i~~sg~~Rr~~~~lqkL~~MiG~s~~LY~~~L~~lR~ 180 (443)
++.++.=.+.+..+++....-.+...+|++..|.|..=+.+.++.|+.
T Consensus 4 s~~~~~v~~~l~~~~~~~~~~~pS~~~la~~~g~s~~Tv~~~i~~L~~ 51 (55)
T PF13730_consen 4 SPTAKLVYLYLASYANKNGGCFPSQETLAKDLGVSRRTVQRAIKELEE 51 (55)
T ss_pred CHHHHHHHHHHHHhcCCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 333333334444555433335678999999999999888888877764
No 8
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=18.08 E-value=2.7e+02 Score=24.63 Aligned_cols=42 Identities=19% Similarity=0.373 Sum_probs=31.8
Q ss_pred hhhhhHHHHhccCccccchHHHHHHHHHhc--CCHHHHHHHHHHHHHH
Q psy4191 136 ERESAITIIEHSGRFNRIGEVVQKLAHMIG--SSVKLYDMVLQFLRTL 181 (443)
Q Consensus 136 ~R~~~~~~i~~sg~~Rr~~~~lqkL~~MiG--~s~~LY~~~L~~lR~~ 181 (443)
.||+.|+.+.+|.+ +-.+.++.+|+| +...+|+.+.-+=+++
T Consensus 4 ~rEkii~lL~e~~e----plt~~ei~~~~~~~~~~~v~~~L~hiak~l 47 (97)
T COG3357 4 TREKIISLLLESDE----PLTVAEIFELLNGEKEKEVYDHLEHIAKSL 47 (97)
T ss_pred HHHHHHHHHHcCCC----cchHHHHHHHHcCCchHHHHHHHHHHHHHH
Confidence 58999999999863 355888999998 4477888776555543
No 9
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=13.66 E-value=3.8e+02 Score=29.46 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=19.8
Q ss_pred hcCCHHHHHHHHHHHHHHHhhcC
Q psy4191 164 IGSSVKLYDMVLQFLRTLFLRTH 186 (443)
Q Consensus 164 iG~s~~LY~~~L~~lR~~f~~t~ 186 (443)
.|++.+||+ ++|-||.+|++.+
T Consensus 43 ~Gk~Hpl~~-TIq~lReAYLr~G 64 (536)
T COG2024 43 TGKPHPLYE-TIQRLREAYLRMG 64 (536)
T ss_pred cCCcCcHHH-HHHHHHHHHHHhh
Confidence 799999998 6899999999875
No 10
>PRK04330 hypothetical protein; Provisional
Probab=13.51 E-value=1.3e+02 Score=26.14 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=20.3
Q ss_pred HHHHHHhhCHhHhhhcCHHHHHHHHhc
Q psy4191 31 KYLRVLVRDRELYKDTDTEVKRQIWKD 57 (443)
Q Consensus 31 ~yL~~L~~d~~Ly~~~pveVkRQIW~~ 57 (443)
.+|..++.||+ .|.+.|-+||+.
T Consensus 58 s~LdeIs~DPN----mP~h~RT~IW~i 80 (88)
T PRK04330 58 SILDEISNDPN----MPLHTRTLIWNI 80 (88)
T ss_pred HHHHHhhcCCC----CChHHHHHHHHH
Confidence 46999999996 599999999986
Done!