Query psy4191
Match_columns 443
No_of_seqs 51 out of 53
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 19:10:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4191.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4191hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hp8_A HU-P8; leukemia, cystei 20.2 1.1E+02 0.0036 24.3 3.9 38 211-248 3-40 (68)
2 2kwv_A RAD30 homolog B, DNA po 20.0 49 0.0017 24.7 1.8 19 39-57 17-35 (48)
3 3tj1_A RNA polymerase I-specif 17.3 6.5E+02 0.022 27.4 10.6 53 232-284 71-128 (649)
4 2qzg_A Conserved uncharacteriz 14.4 88 0.003 26.3 2.3 23 31-57 63-85 (94)
5 2heo_A Z-DNA binding protein 1 14.4 1.4E+02 0.0047 22.3 3.3 41 136-180 11-51 (67)
6 1ei0_A P8MTCP1; helix-turn-hel 14.3 1.6E+02 0.0056 20.4 3.4 32 213-244 1-32 (38)
7 2qsb_A UPF0147 protein TA0600; 13.7 96 0.0033 25.8 2.4 23 31-57 59-81 (89)
8 3ldz_A STAM-1, signal transduc 12.9 6E+02 0.02 21.6 7.4 36 153-189 22-57 (140)
9 3nnr_A Transcriptional regulat 12.5 6.3E+02 0.021 21.3 9.7 41 269-309 122-163 (228)
10 2ke4_A CDC42-interacting prote 10.4 62 0.0021 27.0 0.2 11 130-140 9-19 (98)
No 1
>1hp8_A HU-P8; leukemia, cysteine motif; NMR {Homo sapiens} SCOP: a.17.1.1 PDB: 2hp8_A
Probab=20.16 E-value=1.1e+02 Score=24.32 Aligned_cols=38 Identities=16% Similarity=0.294 Sum_probs=32.5
Q ss_pred ccCccchhhhhHHHHhhhcccchHhHHHHHHHHHHhhc
Q psy4191 211 SVDPCHKFTWCLDACIREKNVDIKRSRELQGFLDSIKR 248 (443)
Q Consensus 211 ~~DPcHKfaWcLDAciRd~~lD~kr~~ELq~~L~~~Kr 248 (443)
+.|||++.|=-.=.|+..+.-|..+.......|..=++
T Consensus 3 ~~dPC~~~AcaiQ~CL~~N~yd~skCq~~id~L~eCc~ 40 (68)
T 1hp8_A 3 QKDPCQKQACEIQKCLQANSYMESKCQAVIQELRKCCA 40 (68)
T ss_dssp SCCTTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred CCCchHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 56999999999999999999999999888877765544
No 2
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=19.99 E-value=49 Score=24.71 Aligned_cols=19 Identities=21% Similarity=0.567 Sum_probs=16.5
Q ss_pred CHhHhhhcCHHHHHHHHhc
Q psy4191 39 DRELYKDTDTEVKRQIWKD 57 (443)
Q Consensus 39 d~~Ly~~~pveVkRQIW~~ 57 (443)
|++.|+++|++++..|...
T Consensus 17 D~eVF~~LP~dIQ~Ells~ 35 (48)
T 2kwv_A 17 DQEVFKQLPADIQEEILSG 35 (48)
T ss_dssp CGGGTTTSCHHHHHHHTTC
T ss_pred CHHHHHHCcHHHHHHHHhc
Confidence 8999999999999888543
No 3
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=17.31 E-value=6.5e+02 Score=27.37 Aligned_cols=53 Identities=19% Similarity=0.184 Sum_probs=33.1
Q ss_pred chHhHHHHHHHHHHhhcCCccccchhhhhhcChh-----HHHHHHHHHHHHHHHHhcc
Q psy4191 232 DIKRSRELQGFLDSIKRGHEQVLGDLSMTLCDPY-----AINFLATSAMKILHYLINN 284 (443)
Q Consensus 232 D~kr~~ELq~~L~~~Krg~~~vLgDlaMil~DP~-----vi~~L~~s~ik~L~~~v~~ 284 (443)
+.--.++....|++.++|+..-.--+.-++++|. .-..-....++.|..+|..
T Consensus 71 ~~~~~~~V~~AL~~~~~Gd~~~Yd~L~~~~~~~~~~~d~~~~~~L~~~L~aLs~~Vs~ 128 (649)
T 3tj1_A 71 AAMYSRFVKSALDDLDKNDSTQIGIIANQVALPSKNPERINDKNLNILLDILSSNINR 128 (649)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSCTTCTTSCCHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCcCcCcCCHHHHHHHHHHHHhhhhh
Confidence 3445567788888888887655566666666663 2223344556677777744
No 4
>2qzg_A Conserved uncharacterized archaeal protein; unknown function protein, structu genomics, PSI-2, protein structure initiative; 2.09A {Methanococcus maripaludis S2} SCOP: a.29.14.1
Probab=14.39 E-value=88 Score=26.29 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=20.3
Q ss_pred HHHHHHhhCHhHhhhcCHHHHHHHHhc
Q psy4191 31 KYLRVLVRDRELYKDTDTEVKRQIWKD 57 (443)
Q Consensus 31 ~yL~~L~~d~~Ly~~~pveVkRQIW~~ 57 (443)
..|..++.||+ .|.++|-+||+.
T Consensus 63 s~LDeISnDPN----mP~htRT~IW~i 85 (94)
T 2qzg_A 63 QYLDDISEDPN----MPIHTRTQIWGI 85 (94)
T ss_dssp HHHHHHTTCTT----CCHHHHHHHHHH
T ss_pred HHHHHhhcCCC----CChHHHHHHHHH
Confidence 46999999996 699999999986
No 5
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=14.38 E-value=1.4e+02 Score=22.31 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=29.7
Q ss_pred hhhhhHHHHhccCccccchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy4191 136 ERESAITIIEHSGRFNRIGEVVQKLAHMIGSSVKLYDMVLQFLRT 180 (443)
Q Consensus 136 ~R~~~~~~i~~sg~~Rr~~~~lqkL~~MiG~s~~LY~~~L~~lR~ 180 (443)
.|++++..|...|.. -...+|++++|-+..--.+.++.|+.
T Consensus 11 ~~~~IL~~L~~~~~~----~s~~eLA~~lglsr~tv~~~l~~L~~ 51 (67)
T 2heo_A 11 LEQKILQVLSDDGGP----VAIFQLVKKCQVPKKTLNQVLYRLKK 51 (67)
T ss_dssp HHHHHHHHHHHHCSC----EEHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC----cCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 466788888765422 23678999999998877777777765
No 6
>1ei0_A P8MTCP1; helix-turn-helix, disulfide bridges, cell cycle; NMR {Synthetic} SCOP: j.77.1.1
Probab=14.34 E-value=1.6e+02 Score=20.44 Aligned_cols=32 Identities=19% Similarity=0.381 Sum_probs=25.1
Q ss_pred CccchhhhhHHHHhhhcccchHhHHHHHHHHH
Q psy4191 213 DPCHKFTWCLDACIREKNVDIKRSRELQGFLD 244 (443)
Q Consensus 213 DPcHKfaWcLDAciRd~~lD~kr~~ELq~~L~ 244 (443)
|||++.|=-.=.|+..+.-|..+.......|.
T Consensus 1 dpC~~~a~a~q~CL~~n~~d~skCq~~id~l~ 32 (38)
T 1ei0_A 1 DPCQKQAAEIQKCLQANSYLESKCQAVIQELK 32 (38)
T ss_dssp CCSHHHHHHHHHHHHHTTTCGGGTHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 79999988888898888888887776655443
No 7
>2qsb_A UPF0147 protein TA0600; structural genomics, four-helix bundle, PSI-2, protein structure initiative; HET: MSE; 1.30A {Thermoplasma acidophilum dsm 1728} SCOP: a.29.14.1
Probab=13.74 E-value=96 Score=25.83 Aligned_cols=23 Identities=9% Similarity=0.193 Sum_probs=20.3
Q ss_pred HHHHHHhhCHhHhhhcCHHHHHHHHhc
Q psy4191 31 KYLRVLVRDRELYKDTDTEVKRQIWKD 57 (443)
Q Consensus 31 ~yL~~L~~d~~Ly~~~pveVkRQIW~~ 57 (443)
..|..++.||+ .|.++|-+||+.
T Consensus 59 s~LDeISnDPN----mP~h~RT~IW~i 81 (89)
T 2qsb_A 59 SMLDEMANDPN----VPAHGRTDLYTI 81 (89)
T ss_dssp HHHHHHHTCTT----SCHHHHHHHHHH
T ss_pred HHHHHhhcCCC----CChHHHHHHHHH
Confidence 46999999996 599999999986
No 8
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=12.88 E-value=6e+02 Score=21.60 Aligned_cols=36 Identities=11% Similarity=0.029 Sum_probs=27.5
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcCCcc
Q psy4191 153 IGEVVQKLAHMIGSSVKLYDMVLQFLRTLFLRTHNVH 189 (443)
Q Consensus 153 ~~~~lqkL~~MiG~s~~LY~~~L~~lR~~f~~t~nv~ 189 (443)
++..+..+.++|..+..-=..++..||...- ++|++
T Consensus 22 dw~~ileicD~I~~~~~~~k~a~rai~Krl~-~~n~~ 57 (140)
T 3ldz_A 22 DWGLILDICDKVGQSRTGPKDCLRSIMRRVN-HKDPH 57 (140)
T ss_dssp CHHHHHHHHHHHTTSTTHHHHHHHHHHHHHT-CSSHH
T ss_pred CHHHHHHHHHHHHCCCcCHHHHHHHHHHHHc-CCChH
Confidence 4789999999999887666677777777754 45654
No 9
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional regulator, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Probab=12.49 E-value=6.3e+02 Score=21.25 Aligned_cols=41 Identities=12% Similarity=0.144 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHhcccCCCCcchhHH-HHHHHHhcccchhh
Q psy4191 269 FLATSAMKILHYLINNEALPRENTVLV-LLLRMLALGLSAWV 309 (443)
Q Consensus 269 ~L~~s~ik~L~~~v~~~~LPrd~~~l~-~LlrLL~LG~~a~~ 309 (443)
-+...+...+...+.+..++.+.+.+. .++..+..|...|-
T Consensus 122 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (228)
T 3nnr_A 122 RCLAAINRIFAKLADAGIIQPQPEDLRSAMSLNVWLVITNWM 163 (228)
T ss_dssp HHHHHHHHHHHHHHHTTSBCCCCHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 344455556666777788877777555 55555555555443
No 10
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=10.43 E-value=62 Score=27.02 Aligned_cols=11 Identities=27% Similarity=0.806 Sum_probs=8.6
Q ss_pred CCCCcchhhhh
Q psy4191 130 SKMPPDERESA 140 (443)
Q Consensus 130 ~~~p~~~R~~~ 140 (443)
+++||++|.+.
T Consensus 9 s~LPpeqRkkk 19 (98)
T 2ke4_A 9 SHLPPEQQRKR 19 (98)
T ss_dssp SSSCHHHHHHH
T ss_pred ccCCHHHHHHH
Confidence 57999988763
Done!