Query psy4191
Match_columns 443
No_of_seqs 51 out of 53
Neff 4.1
Searched_HMMs 13730
Date Fri Aug 16 19:11:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4191.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4191hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2hp8a_ a.17.1.1 (A:) p8-MTCP1 41.4 7.9 0.00058 29.0 2.7 33 211-243 3-35 (68)
2 d1m8za_ a.118.1.8 (A:) Pumilio 14.6 2.9E+02 0.021 23.5 8.7 51 215-270 247-298 (339)
3 d2qsba1 a.29.14.1 (A:2-86) Unc 14.5 42 0.0031 25.8 2.4 24 31-58 55-78 (85)
4 d1dvpa1 a.118.9.2 (A:1-145) Hr 12.9 2.1E+02 0.015 22.4 6.6 38 151-189 20-57 (145)
5 d1juqa_ a.118.9.2 (A:) ADP-rib 12.8 2.1E+02 0.016 22.7 6.7 37 152-189 18-54 (151)
6 d2etja1 c.55.3.1 (A:1-221) Cla 12.5 1E+02 0.0076 26.5 4.8 50 187-244 160-219 (221)
7 d1j0ta_ a.163.1.1 (A:) Mlt-inh 11.7 55 0.004 24.7 2.2 28 217-249 50-77 (78)
8 d2qzga1 a.29.14.1 (A:4-91) Unc 11.1 51 0.0037 25.4 1.9 25 31-59 57-81 (88)
9 d2iw5b1 a.4.1.3 (B:376-440) RE 10.9 1E+02 0.0074 21.2 3.4 45 128-184 4-48 (65)
10 d2d2sa1 a.118.17.2 (A:525-753) 10.2 1.3E+02 0.0097 25.4 4.6 33 216-248 7-47 (229)
No 1
>d2hp8a_ a.17.1.1 (A:) p8-MTCP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.42 E-value=7.9 Score=29.01 Aligned_cols=33 Identities=18% Similarity=0.386 Sum_probs=26.9
Q ss_pred ccCccchhhhhHHHHhhhcccchHhHHHHHHHH
Q psy4191 211 SVDPCHKFTWCLDACIREKNVDIKRSRELQGFL 243 (443)
Q Consensus 211 ~~DPcHKfaWcLDAciRd~~lD~kr~~ELq~~L 243 (443)
..||||++|--+-.|+..+.-|..+.......|
T Consensus 3 ~kdPCk~~AC~IQ~CLq~N~Y~EskC~~~i~~L 35 (68)
T d2hp8a_ 3 QKDPCQKQACEIQKCLQANSYMESKCQAVIQEL 35 (68)
T ss_dssp SCCTTHHHHHHHHHHHHHTTTCTTTTHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 479999999999999999888887776555444
No 2
>d1m8za_ a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.58 E-value=2.9e+02 Score=23.52 Aligned_cols=51 Identities=18% Similarity=0.287 Sum_probs=28.0
Q ss_pred cchhh-hhHHHHhhhcccchHhHHHHHHHHHHhhcCCccccchhhhhhcChhHHHHH
Q psy4191 215 CHKFT-WCLDACIREKNVDIKRSRELQGFLDSIKRGHEQVLGDLSMTLCDPYAINFL 270 (443)
Q Consensus 215 cHKfa-WcLDAciRd~~lD~kr~~ELq~~L~~~Krg~~~vLgDlaMil~DP~vi~~L 270 (443)
+||++ ..++.|+....-+.+ ...++.+...++..-+.+..++.||++-+.+
T Consensus 247 ~~k~gS~vve~~l~~~~~~~~-----~~~~~~l~~~~~~~~~~l~~L~~d~~gn~Vi 298 (339)
T d1m8za_ 247 QHKFASNVVEKCVTHASRTER-----AVLIDEVCTMNDGPHSALYTMMKDQYANYVV 298 (339)
T ss_dssp TSTTHHHHHHHHHHHSCHHHH-----HHHHHHHHHCEETTEEHHHHHHTSTTHHHHH
T ss_pred cchhHHHHHHHHHHhCCHHHH-----HHHHHHHHhcccCchHHHHHHHcCCcccHHH
Confidence 46666 478999987543322 2223333233332334566777899765544
No 3
>d2qsba1 a.29.14.1 (A:2-86) Uncharacterized protein Ta0600 {Thermoplasma acidophilum [TaxId: 2303]}
Probab=14.48 E-value=42 Score=25.77 Aligned_cols=24 Identities=8% Similarity=0.147 Sum_probs=20.5
Q ss_pred HHHHHHhhCHhHhhhcCHHHHHHHHhcC
Q psy4191 31 KYLRVLVRDRELYKDTDTEVKRQIWKDN 58 (443)
Q Consensus 31 ~yL~~L~~d~~Ly~~~pveVkRQIW~~n 58 (443)
..|..+++||+ .|.++|=+||+.-
T Consensus 55 s~LdeIs~DPN----mP~h~RT~iw~iv 78 (85)
T d2qsba1 55 SMLDEMANDPN----VPAHGRTDLYTII 78 (85)
T ss_dssp HHHHHHHTCTT----SCHHHHHHHHHHH
T ss_pred HHHHHhhcCCC----CChHHHHHHHHHH
Confidence 56889999986 5999999999863
No 4
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=12.95 E-value=2.1e+02 Score=22.41 Aligned_cols=38 Identities=8% Similarity=0.006 Sum_probs=29.3
Q ss_pred ccchHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcCCcc
Q psy4191 151 NRIGEVVQKLAHMIGSSVKLYDMVLQFLRTLFLRTHNVH 189 (443)
Q Consensus 151 Rr~~~~lqkL~~MiG~s~~LY~~~L~~lR~~f~~t~nv~ 189 (443)
--+++.+..+.++|..+..-=..+++.||.. ++++|++
T Consensus 20 ~~dw~~il~icD~I~~~~~~~k~a~ral~kr-l~~~n~~ 57 (145)
T d1dvpa1 20 EPDWPSILLICDEINQKDVTPKNAFAAIKKK-MNSPNPH 57 (145)
T ss_dssp SCCHHHHHHHHHHHHTTSSCHHHHHHHHHHH-HTCSSHH
T ss_pred CCCHHHHHHHHHHHhCCCccHHHHHHHHHHH-HcCCCHH
Confidence 3458999999999987766567788888888 4566654
No 5
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.84 E-value=2.1e+02 Score=22.75 Aligned_cols=37 Identities=8% Similarity=0.074 Sum_probs=29.2
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcCCcc
Q psy4191 152 RIGEVVQKLAHMIGSSVKLYDMVLQFLRTLFLRTHNVH 189 (443)
Q Consensus 152 r~~~~lqkL~~MiG~s~~LY~~~L~~lR~~f~~t~nv~ 189 (443)
-+++++..+.++|..+..-=..++..||... +++|++
T Consensus 18 ~dw~~ileicD~In~~~~~~k~a~rai~krl-~~~~~~ 54 (151)
T d1juqa_ 18 EDWEYIIGFCDQINKELEGPQIAVRLLAHKI-QSPQEW 54 (151)
T ss_dssp CCHHHHHHHHHHHHHSTTHHHHHHHHHHHHH-TCSSHH
T ss_pred cCHHHHHHHHHHHhcCCccHHHHHHHHHHHH-cCCCHH
Confidence 4589999999999877766677888888885 566765
No 6
>d2etja1 c.55.3.1 (A:1-221) Class II ribonuclease H (RNase HII) {Thermotoga maritima [TaxId: 2336]}
Probab=12.52 E-value=1e+02 Score=26.49 Aligned_cols=50 Identities=20% Similarity=0.307 Sum_probs=32.1
Q ss_pred CccchhhHHHHHHHhcccccccccccCccchhhh----------hHHHHhhhcccchHhHHHHHHHHH
Q psy4191 187 NVHYCTLRAELLMALHDLEIQDIISVDPCHKFTW----------CLDACIREKNVDIKRSRELQGFLD 244 (443)
Q Consensus 187 nv~yCtLR~eLLMalhd~~i~~i~~~DPcHKfaW----------cLDAciRd~~lD~kr~~ELq~~L~ 244 (443)
|-.|+| .+-+.++.+-+ ..|||++.| .+..+..++.+|.++...+.+.++
T Consensus 160 ~sGY~T--~~h~~ai~~~G------~~~~hR~Sw~tvk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (221)
T d2etja1 160 HKGYAT--KEHLNEIRKNG------VLPIHRLSFEPVLELLTDDLLREFFEKGLISENRFERILNLLG 219 (221)
T ss_dssp HTTCCC--HHHHHHHHHHC------CCTTBCTTSHHHHTTCCHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred CcCCCc--HHHHHHHHHhC------cCccccCCcHHHHHHhhcchhHHHHhhccccHHHHHHHHHHhc
Confidence 567887 44556665555 368999999 233344456777777776666553
No 7
>d1j0ta_ a.163.1.1 (A:) Mlt-inhibiting hormone (MIH) {Kuruma prawn (Marsupenaeus japonicus) [TaxId: 27405]}
Probab=11.71 E-value=55 Score=24.73 Aligned_cols=28 Identities=25% Similarity=0.488 Sum_probs=20.5
Q ss_pred hhhhhHHHHhhhcccchHhHHHHHHHHHHhhcC
Q psy4191 217 KFTWCLDACIREKNVDIKRSRELQGFLDSIKRG 249 (443)
Q Consensus 217 KfaWcLDAciRd~~lD~kr~~ELq~~L~~~Krg 249 (443)
-|.||+||-.++.. ..+++..+..+..|
T Consensus 50 ~F~~C~~al~~~de-----~~~~~~~i~il~ag 77 (78)
T d1j0ta_ 50 WFLICLKAANREDE-----IEKFRVWISILNAG 77 (78)
T ss_dssp HHHHHHHTTSCCST-----HHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHhHhH-----HHHHHHHHHHHcCC
Confidence 48999999888844 56677776666655
No 8
>d2qzga1 a.29.14.1 (A:4-91) Uncharacterized protein MMP1188 {Methanococcus maripaludis [TaxId: 39152]}
Probab=11.09 E-value=51 Score=25.41 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=21.1
Q ss_pred HHHHHHhhCHhHhhhcCHHHHHHHHhcCh
Q psy4191 31 KYLRVLVRDRELYKDTDTEVKRQIWKDNQ 59 (443)
Q Consensus 31 ~yL~~L~~d~~Ly~~~pveVkRQIW~~n~ 59 (443)
..|..+++||+ .|.++|=+||+.--
T Consensus 57 s~LDeIs~DPN----mP~h~Rt~iw~ivs 81 (88)
T d2qzga1 57 QYLDDISEDPN----MPIHTRTQIWGIVS 81 (88)
T ss_dssp HHHHHHTTCTT----CCHHHHHHHHHHHH
T ss_pred HHHHHhhcCCC----CCcHHHHHHHHHHH
Confidence 56899999986 59999999998743
No 9
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.95 E-value=1e+02 Score=21.20 Aligned_cols=45 Identities=22% Similarity=0.401 Sum_probs=29.6
Q ss_pred hcCCCCcchhhhhHHHHhccCccccchHHHHHHHHHhcCCHHHHHHHHHHHHHHHhh
Q psy4191 128 LNSKMPPDERESAITIIEHSGRFNRIGEVVQKLAHMIGSSVKLYDMVLQFLRTLFLR 184 (443)
Q Consensus 128 ~~~~~p~~~R~~~~~~i~~sg~~Rr~~~~lqkL~~MiG~s~~LY~~~L~~lR~~f~~ 184 (443)
.+++|+++|.+.....+..-|.. -.+|++++|. ++..-||..|.+
T Consensus 4 ~~~~WT~eE~~~f~~~~~~~G~~------w~~Ia~~~~~------kt~~q~~~~y~~ 48 (65)
T d2iw5b1 4 CNARWTTEEQLLAVQAIRKYGRD------FQAISDVIGN------KSVVQVKNFFVN 48 (65)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSC------HHHHHHHHSS------CCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCch------HHHHHHHcCC------CCHHHHHHHHHH
Confidence 36789999998888888888743 4455556653 224556666654
No 10
>d2d2sa1 a.118.17.2 (A:525-753) Exocyst complex component EXO84 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.16 E-value=1.3e+02 Score=25.42 Aligned_cols=33 Identities=6% Similarity=0.213 Sum_probs=22.7
Q ss_pred chhhh------hHHHHhhhcccchHh--HHHHHHHHHHhhc
Q psy4191 216 HKFTW------CLDACIREKNVDIKR--SRELQGFLDSIKR 248 (443)
Q Consensus 216 HKfaW------cLDAciRd~~lD~kr--~~ELq~~L~~~Kr 248 (443)
+++-| -||.||++++.|..- +.+.+.++.++++
T Consensus 7 ~~~~wl~d~~d~LDv~Ia~~~feeAl~ll~~~e~~l~~~~~ 47 (229)
T d2d2sa1 7 QRLKFLDEGVEEIDIELARLRFESAVETLLDIESQLEDLSE 47 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-
T ss_pred hhhhhHhcccHHHHHHHHHccHHHHHHHHHHHHHHHHhccc
Confidence 45566 489999999988754 4566667766544
Done!