Your job contains 1 sequence.
>psy4191
MLKKSFPLVRVKQLRPVVMAILRNTTHIDDKYLRVLVRDRELYKDTDTEVKRQIWKDNQS
LFGDEVSPLLSQYIREKENILFDHHNLTNLFFFPTPKEFKEPKLDSQVVTKFVPALMSLM
VDDQVRALNSKMPPDERESAITIIEHSGRFNRIGEVVQKLAHMIGSSVKLYDMVLQFLRT
LFLRTHNVHYCTLRAELLMALHDLEIQDIISVDPCHKFTWCLDACIREKNVDIKRSRELQ
GFLDSIKRGHEQVLGDLSMTLCDPYAINFLATSAMKILHYLINNEALPRENTVLVLLLRM
LALGLSAWVMIDTQGGNILIEIFRSCFKLYDMVLQFLRTLFLRTHNVHYWPVPDAVQAYV
QESSVACIISMYYTLHTARSRDRVGLMRVLGVLATSESDRAFDDPFLHFLSSYEISLWTS
LNWQRVWLRHYFQTSPKRNFNVL
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy4191
(443 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0027553 - symbol:NELF-B "NELF-B" species:7227 "Dro... 887 1.1e-129 2
UNIPROTKB|F1P5D4 - symbol:COBRA1 "Uncharacterized protein... 669 1.7e-90 2
UNIPROTKB|Q5ZLK9 - symbol:COBRA1 "Uncharacterized protein... 669 1.7e-90 2
UNIPROTKB|F1RVX9 - symbol:COBRA1 "Uncharacterized protein... 661 3.9e-89 2
UNIPROTKB|G5E5S2 - symbol:COBRA1 "Uncharacterized protein... 651 1.5e-87 2
RGD|1307832 - symbol:Nelfb "negative elongation factor co... 649 1.9e-87 2
UNIPROTKB|E2QX07 - symbol:COBRA1 "Uncharacterized protein... 649 1.9e-87 2
UNIPROTKB|Q8WX92 - symbol:NELFB "Negative elongation fact... 648 2.4e-87 2
MGI|MGI:1931035 - symbol:Nelfb "negative elongation facto... 647 3.1e-87 2
ZFIN|ZDB-GENE-040426-765 - symbol:nelfb "negative elongat... 638 1.3e-86 2
UNIPROTKB|D4A2H9 - symbol:Cobra1 "Protein Cobra1" species... 556 6.1e-60 2
DICTYBASE|DDB_G0284195 - symbol:DDB_G0284195 "cofactor of... 237 1.2e-26 2
>FB|FBgn0027553 [details] [associations]
symbol:NELF-B "NELF-B" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0007070 "negative
regulation of transcription from RNA polymerase II promoter during
mitosis" evidence=ISS] [GO:0017053 "transcriptional repressor
complex" evidence=ISS] [GO:0032021 "NELF complex" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0034244 "negative
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IDA] InterPro:IPR010405 Pfam:PF06209
GO:GO:0017053 GO:GO:0005694 EMBL:AE014298 GO:GO:0006351
GO:GO:0003723 GO:GO:0034244 GO:GO:0007070 GO:GO:0032021
EMBL:AF145659 RefSeq:NP_572402.1 UniGene:Dm.3142 DIP:DIP-59537N
STRING:Q9Y113 PaxDb:Q9Y113 PRIDE:Q9Y113 EnsemblMetazoa:FBtr0071077
GeneID:31681 KEGG:dme:Dmel_CG32721 UCSC:CG32721-RA CTD:31681
FlyBase:FBgn0027553 eggNOG:NOG69243 GeneTree:ENSGT00390000012665
InParanoid:Q9Y113 KO:K15180 OMA:EQLDHRK OrthoDB:EOG4N5TBZ
PhylomeDB:Q9Y113 GenomeRNAi:31681 NextBio:774804 Bgee:Q9Y113
GermOnline:CG32721 PANTHER:PTHR13503 Uniprot:Q9Y113
Length = 594
Score = 887 (317.3 bits), Expect = 1.1e-129, Sum P(2) = 1.1e-129
Identities = 181/279 (64%), Positives = 212/279 (75%)
Query: 149 RFNRIGEVVQKLAHMIGSSVKLYDMVLQFLRTLFLRTHNVHYCTLRAELLMALHDLEIQD 208
+ R GEVVQKLA+MIG+SVKLYDMVLQFLRTLFLRT NVHYCTLRAELLMALHDLE+Q+
Sbjct: 201 KVRRQGEVVQKLANMIGTSVKLYDMVLQFLRTLFLRTRNVHYCTLRAELLMALHDLEVQE 260
Query: 209 IISVDPCHKFTWCLDACIREKNVDIKRSRELQGFLDSIKRGHEQVLGDLSMTLCDPYAIN 268
IIS+DPCHKFTWCLDACIREKNVDIKRSRELQGFLD+IKRG EQVLGDLSMTLCDPYAIN
Sbjct: 261 IISIDPCHKFTWCLDACIREKNVDIKRSRELQGFLDNIKRGQEQVLGDLSMTLCDPYAIN 320
Query: 269 FLATSAMKILHYLINNEALPRENTVXXXXXXXXXXXXSAWVMIDTQGGN-------ILIE 321
FLATSA+KILH+LINNE +PR+N + SAWVMID+Q ++ +
Sbjct: 321 FLATSAIKILHHLINNEGMPRDNQILILLLRMLALGLSAWVMIDSQDFKEPKLDCQVVTK 380
Query: 322 IFRSCFKLYDMVLQFLRTLFLR----------THNVHYWPVPDAVQAYVQESSVACIISM 371
+ L MV R+L + T H P PDAV+AY+QESSVA I++M
Sbjct: 381 FLPALMSL--MVDDQCRSLHAKLPPDERESALTTIEHSGPAPDAVEAYIQESSVASILAM 438
Query: 372 YYTLHTARSRDRVGLMRVLGVLATSESDRAFDDPFLHFL 410
YYTLHTAR +DRVG++RVL +L+ + DRA++DPFLH L
Sbjct: 439 YYTLHTARLKDRVGVLRVLAILSACKDDRAYEDPFLHSL 477
Score = 406 (148.0 bits), Expect = 1.1e-129, Sum P(2) = 1.1e-129
Identities = 78/90 (86%), Positives = 84/90 (93%)
Query: 1 MLKKSFPLVRVKQLRPVVMAILRNTTHIDDKYLRVLVRDRELYKDTDTEVKRQIWKDNQS 60
+L KSFP+VRVK LRPVVMAILRNT HIDDKYL++LVRDRELY DTDTEVKRQIW+DNQS
Sbjct: 105 LLVKSFPVVRVKSLRPVVMAILRNTQHIDDKYLKILVRDRELYADTDTEVKRQIWRDNQS 164
Query: 61 LFGDEVSPLLSQYIREKENILFDHHNLTNL 90
LFGDEVSPLLSQYIREKE+ILFDH NL NL
Sbjct: 165 LFGDEVSPLLSQYIREKEHILFDHTNLNNL 194
Score = 187 (70.9 bits), Expect = 1.3e-55, Sum P(2) = 1.3e-55
Identities = 36/45 (80%), Positives = 42/45 (93%)
Query: 104 LDSQVVTKFVPALMSLMVDDQVRALNSKMPPDERESAITIIEHSG 148
LD QVVTKF+PALMSLMVDDQ R+L++K+PPDERESA+T IEHSG
Sbjct: 373 LDCQVVTKFLPALMSLMVDDQCRSLHAKLPPDERESALTTIEHSG 417
>UNIPROTKB|F1P5D4 [details] [associations]
symbol:COBRA1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0032021 "NELF complex" evidence=IEA] InterPro:IPR010405
Pfam:PF06209 GO:GO:0005737 GO:GO:0045892 GO:GO:0032021
GeneTree:ENSGT00390000012665 OMA:EQLDHRK PANTHER:PTHR13503
EMBL:AADN02026910 IPI:IPI00822151 Ensembl:ENSGALT00000040215
ArrayExpress:F1P5D4 Uniprot:F1P5D4
Length = 584
Score = 669 (240.6 bits), Expect = 1.7e-90, Sum P(2) = 1.7e-90
Identities = 146/283 (51%), Positives = 183/283 (64%)
Query: 147 SGRFNRIGEVVQKLAHMIGSSVKLYDMVLQFLRTLFLRTHNVHYCTLRAELLMALHDLEI 206
S + R GEVVQKL MIG +VKLYDMVLQFLRTLFLRT NVHYCTLRAELLM+LHDLEI
Sbjct: 198 SPKARRQGEVVQKLTQMIGKNVKLYDMVLQFLRTLFLRTRNVHYCTLRAELLMSLHDLEI 257
Query: 207 QDIISVDPCHKFTWCLDACIREKNVDIKRSRELQGFLDSIKRGHEQVLGDLSMTLCDPYA 266
+I +VDPCHKFTWCLDACIREK VD KR+RELQGFLD +K+G EQVLGDLSM LCDP+A
Sbjct: 258 SEICTVDPCHKFTWCLDACIREKFVDNKRARELQGFLDGVKKGQEQVLGDLSMILCDPFA 317
Query: 267 INFLATSAMKILHYLINNEALPRENTVXXXXXXXXXXXXSAWVMIDTQGGNILIEIFRSC 326
IN LA S ++ L L+ + LPRE+ AW MID+Q +F+
Sbjct: 318 INTLALSTIRHLQDLVGQDTLPRESPDLLLLLRMLSLGQGAWDMIDSQ-------VFKEP 370
Query: 327 FKLYDMVLQFLRTL--FL---RTHNVHY-----------WP--VPDAVQAYVQESSVACI 368
+++ +FL L F+ T NV +P +P+A ++QE+ +AC
Sbjct: 371 KMEAELITKFLPMLMSFVVDDHTFNVDQKLPSEEKGPIPYPSTIPEAFTKFLQENRIACE 430
Query: 369 ISMYYTLHTARSRDRVGLMRVLGVLATSESDRAFDDPFLHFLS 411
I +YY LH + R++ +R+L L + SD AF D FLH L+
Sbjct: 431 IGLYYILHITKQRNKNAFLRLLPALVETFSDLAFSDIFLHLLT 473
Score = 253 (94.1 bits), Expect = 1.7e-90, Sum P(2) = 1.7e-90
Identities = 46/84 (54%), Positives = 67/84 (79%)
Query: 1 MLKKSFPLVRVKQLRPVVMAILRNTTHIDDKYLRVLVRDRELYKDTDTEVKRQIWKDNQS 60
+L+KSF LV++ ++PVVM ++++ + +K L++++ D++LYK EVKRQIW+DNQ+
Sbjct: 103 LLEKSFSLVKMPSIQPVVMCVMKHLPKVPEKKLKLVMADKDLYKACAVEVKRQIWQDNQA 162
Query: 61 LFGDEVSPLLSQYIREKENILFDH 84
LFGDEVSPLL QYI EKENILF +
Sbjct: 163 LFGDEVSPLLKQYILEKENILFSN 186
Score = 84 (34.6 bits), Expect = 1.5e-23, Sum P(2) = 1.5e-23
Identities = 38/139 (27%), Positives = 68/139 (48%)
Query: 104 LDSQVVTKFVPALMSLMVDDQVRALNSKMPPDERESA---ITIIEHSGRF---NRIG-EV 156
++++++TKF+P LMS +VDD ++ K+P +E+ TI E +F NRI E+
Sbjct: 372 MEAELITKFLPMLMSFVVDDHTFNVDQKLPSEEKGPIPYPSTIPEAFTKFLQENRIACEI 431
Query: 157 -VQKLAHMIGSSVKLYDMVLQFLRTLFLRTHNVHYCTLRAELLMALHDLEIQDIISVDP- 214
+ + H+ K + L+ L L ++ + + LL L + D +V+
Sbjct: 432 GLYYILHITKQRNK--NAFLRLLPALVETFSDLAFSDIFLHLLTGNLTL-LGDEFAVEEF 488
Query: 215 CHKFT--WCLDACIREKNV 231
C + L AC R++NV
Sbjct: 489 CTSLFDGFFLTACSRKENV 507
>UNIPROTKB|Q5ZLK9 [details] [associations]
symbol:COBRA1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0032021 "NELF complex" evidence=IEA] InterPro:IPR010405
Pfam:PF06209 GO:GO:0005737 GO:GO:0045892 GO:GO:0032021
eggNOG:NOG69243 GeneTree:ENSGT00390000012665 KO:K15180
PANTHER:PTHR13503 CTD:25920 HOGENOM:HOG000231489 HOVERGEN:HBG052596
OrthoDB:EOG4MGS77 EMBL:AADN02026910 EMBL:AJ719725 IPI:IPI00586715
RefSeq:NP_001006202.1 UniGene:Gga.22254 STRING:Q5ZLK9
Ensembl:ENSGALT00000013905 GeneID:417254 KEGG:gga:417254
InParanoid:Q5ZLK9 NextBio:20820584 Uniprot:Q5ZLK9
Length = 577
Score = 669 (240.6 bits), Expect = 1.7e-90, Sum P(2) = 1.7e-90
Identities = 146/283 (51%), Positives = 183/283 (64%)
Query: 147 SGRFNRIGEVVQKLAHMIGSSVKLYDMVLQFLRTLFLRTHNVHYCTLRAELLMALHDLEI 206
S + R GEVVQKL MIG +VKLYDMVLQFLRTLFLRT NVHYCTLRAELLM+LHDLEI
Sbjct: 191 SPKARRQGEVVQKLTQMIGKNVKLYDMVLQFLRTLFLRTRNVHYCTLRAELLMSLHDLEI 250
Query: 207 QDIISVDPCHKFTWCLDACIREKNVDIKRSRELQGFLDSIKRGHEQVLGDLSMTLCDPYA 266
+I +VDPCHKFTWCLDACIREK VD KR+RELQGFLD +K+G EQVLGDLSM LCDP+A
Sbjct: 251 SEICTVDPCHKFTWCLDACIREKFVDNKRARELQGFLDGVKKGQEQVLGDLSMILCDPFA 310
Query: 267 INFLATSAMKILHYLINNEALPRENTVXXXXXXXXXXXXSAWVMIDTQGGNILIEIFRSC 326
IN LA S ++ L L+ + LPRE+ AW MID+Q +F+
Sbjct: 311 INTLALSTIRHLQDLVGQDTLPRESPDLLLLLRMLSLGQGAWDMIDSQ-------VFKEP 363
Query: 327 FKLYDMVLQFLRTL--FL---RTHNVHY-----------WP--VPDAVQAYVQESSVACI 368
+++ +FL L F+ T NV +P +P+A ++QE+ +AC
Sbjct: 364 KMEAELITKFLPMLMSFVVDDHTFNVDQKLPSEEKGPIPYPSTIPEAFTKFLQENRIACE 423
Query: 369 ISMYYTLHTARSRDRVGLMRVLGVLATSESDRAFDDPFLHFLS 411
I +YY LH + R++ +R+L L + SD AF D FLH L+
Sbjct: 424 IGLYYILHITKQRNKNAFLRLLPALVETFSDLAFSDIFLHLLT 466
Score = 253 (94.1 bits), Expect = 1.7e-90, Sum P(2) = 1.7e-90
Identities = 46/84 (54%), Positives = 67/84 (79%)
Query: 1 MLKKSFPLVRVKQLRPVVMAILRNTTHIDDKYLRVLVRDRELYKDTDTEVKRQIWKDNQS 60
+L+KSF LV++ ++PVVM ++++ + +K L++++ D++LYK EVKRQIW+DNQ+
Sbjct: 96 LLEKSFSLVKMPSIQPVVMCVMKHLPKVPEKKLKLVMADKDLYKACAVEVKRQIWQDNQA 155
Query: 61 LFGDEVSPLLSQYIREKENILFDH 84
LFGDEVSPLL QYI EKENILF +
Sbjct: 156 LFGDEVSPLLKQYILEKENILFSN 179
Score = 84 (34.6 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 38/139 (27%), Positives = 68/139 (48%)
Query: 104 LDSQVVTKFVPALMSLMVDDQVRALNSKMPPDERESA---ITIIEHSGRF---NRIG-EV 156
++++++TKF+P LMS +VDD ++ K+P +E+ TI E +F NRI E+
Sbjct: 365 MEAELITKFLPMLMSFVVDDHTFNVDQKLPSEEKGPIPYPSTIPEAFTKFLQENRIACEI 424
Query: 157 -VQKLAHMIGSSVKLYDMVLQFLRTLFLRTHNVHYCTLRAELLMALHDLEIQDIISVDP- 214
+ + H+ K + L+ L L ++ + + LL L + D +V+
Sbjct: 425 GLYYILHITKQRNK--NAFLRLLPALVETFSDLAFSDIFLHLLTGNLTL-LGDEFAVEEF 481
Query: 215 CHKFT--WCLDACIREKNV 231
C + L AC R++NV
Sbjct: 482 CTSLFDGFFLTACSRKENV 500
>UNIPROTKB|F1RVX9 [details] [associations]
symbol:COBRA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0032021 "NELF complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR010405
Pfam:PF06209 GO:GO:0005737 GO:GO:0045892 GO:GO:0032021
GeneTree:ENSGT00390000012665 KO:K15180 OMA:EQLDHRK
PANTHER:PTHR13503 CTD:25920 EMBL:CU928955 RefSeq:XP_003122390.1
UniGene:Ssc.4220 Ensembl:ENSSSCT00000006425 GeneID:100514560
KEGG:ssc:100514560 Uniprot:F1RVX9
Length = 580
Score = 661 (237.7 bits), Expect = 3.9e-89, Sum P(2) = 3.9e-89
Identities = 144/283 (50%), Positives = 183/283 (64%)
Query: 147 SGRFNRIGEVVQKLAHMIGSSVKLYDMVLQFLRTLFLRTHNVHYCTLRAELLMALHDLEI 206
S + R GEVVQKL M+G +VKLYDMVLQFLRTLFLRT NVHYCTLRAELLM+LHDL++
Sbjct: 191 SPKTRRQGEVVQKLTRMVGRNVKLYDMVLQFLRTLFLRTRNVHYCTLRAELLMSLHDLDV 250
Query: 207 QDIISVDPCHKFTWCLDACIREKNVDIKRSRELQGFLDSIKRGHEQVLGDLSMTLCDPYA 266
DI SVDPCHKFTWCLDACIRE+ VD KR+RELQGFLD +K+G EQVLGDLSM LCDP+A
Sbjct: 251 GDICSVDPCHKFTWCLDACIRERFVDGKRARELQGFLDGVKKGQEQVLGDLSMILCDPFA 310
Query: 267 INFLATSAMKILHYLINNEALPRENTVXXXXXXXXXXXXSAWVMIDTQGGNILIEIFRSC 326
IN L+ S ++ L L+ E LPRE+ AW MID+Q +F+
Sbjct: 311 INTLSLSTVRHLQELVGQEMLPRESPDLLLLLRLLALGQGAWDMIDSQ-------VFKEP 363
Query: 327 FKLYDMVLQFLRTL--FL---RTHNVHY-----------WP--VPDAVQAYVQESSVACI 368
++V +FL TL F+ T NV +P +P++ ++QE +AC
Sbjct: 364 KMEVELVTRFLPTLMSFVVDDHTFNVDQKLPAEEKAPVTYPSTLPESFTKFLQEQRMACE 423
Query: 369 ISMYYTLHTARSRDRVGLMRVLGVLATSESDRAFDDPFLHFLS 411
+ +YY LH + R++ L+R+L L + D AF D FLH L+
Sbjct: 424 VGLYYVLHITKQRNKNALLRLLPGLVETFGDLAFSDIFLHLLT 466
Score = 248 (92.4 bits), Expect = 3.9e-89, Sum P(2) = 3.9e-89
Identities = 46/82 (56%), Positives = 65/82 (79%)
Query: 1 MLKKSFPLVRVKQLRPVVMAILRNTTHIDDKYLRVLVRDRELYKDTDTEVKRQIWKDNQS 60
+L+KSF LV++ L+PVVM ++++ + +K L++++ D+ELY+ EVKRQIW+DNQ+
Sbjct: 96 LLEKSFSLVKMPSLQPVVMCVMKHLPKVPEKKLKLVMADKELYRACAVEVKRQIWQDNQA 155
Query: 61 LFGDEVSPLLSQYIREKENILF 82
LFGDEVSPLL QYI EKEN LF
Sbjct: 156 LFGDEVSPLLKQYIVEKENALF 177
Score = 79 (32.9 bits), Expect = 1.9e-22, Sum P(2) = 1.9e-22
Identities = 13/34 (38%), Positives = 25/34 (73%)
Query: 104 LDSQVVTKFVPALMSLMVDDQVRALNSKMPPDER 137
++ ++VT+F+P LMS +VDD ++ K+P +E+
Sbjct: 365 MEVELVTRFLPTLMSFVVDDHTFNVDQKLPAEEK 398
>UNIPROTKB|G5E5S2 [details] [associations]
symbol:COBRA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0032021 "NELF complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR010405
Pfam:PF06209 GO:GO:0005737 GO:GO:0045892 GO:GO:0032021
GeneTree:ENSGT00390000012665 OMA:EQLDHRK PANTHER:PTHR13503
EMBL:DAAA02032403 Ensembl:ENSBTAT00000029144 Uniprot:G5E5S2
Length = 580
Score = 651 (234.2 bits), Expect = 1.5e-87, Sum P(2) = 1.5e-87
Identities = 141/283 (49%), Positives = 182/283 (64%)
Query: 147 SGRFNRIGEVVQKLAHMIGSSVKLYDMVLQFLRTLFLRTHNVHYCTLRAELLMALHDLEI 206
S + R GEVVQ+L M+G +VKLYDMVLQFLRTLFLRT NVHYCTLRAELLM+LHDL++
Sbjct: 191 SPKTRRQGEVVQRLTRMVGRNVKLYDMVLQFLRTLFLRTRNVHYCTLRAELLMSLHDLDV 250
Query: 207 QDIISVDPCHKFTWCLDACIREKNVDIKRSRELQGFLDSIKRGHEQVLGDLSMTLCDPYA 266
DI SVDPCHKFTWCLDACIRE+ VD KR+RELQGFLD +K+G EQVLGDLSM LCDP+A
Sbjct: 251 GDICSVDPCHKFTWCLDACIRERFVDSKRARELQGFLDGVKKGQEQVLGDLSMILCDPFA 310
Query: 267 INFLATSAMKILHYLINNEALPRENTVXXXXXXXXXXXXSAWVMIDTQGGNILIEIFRSC 326
IN L+ S ++ L L+ E LPR++ AW MID+Q +F+
Sbjct: 311 INTLSLSTVRHLQELVGQEVLPRDSPDLLLLLRLLALGQGAWDMIDSQ-------VFKEP 363
Query: 327 FKLYDMVLQFLRTL--FL---RTHNVHY-----------WP--VPDAVQAYVQESSVACI 368
++V +FL L F+ T NV +P +P++ ++QE +AC
Sbjct: 364 KMEVELVTRFLPMLMSFVVDDHTFNVDQKLPAEEKAPVTYPNTLPESFTKFLQEQRMACE 423
Query: 369 ISMYYTLHTARSRDRVGLMRVLGVLATSESDRAFDDPFLHFLS 411
+ +YY LH + R++ L+R+L L + D AF D FLH L+
Sbjct: 424 VGLYYVLHITKQRNKNALLRLLPGLVETFGDLAFGDIFLHLLT 466
Score = 243 (90.6 bits), Expect = 1.5e-87, Sum P(2) = 1.5e-87
Identities = 45/82 (54%), Positives = 65/82 (79%)
Query: 1 MLKKSFPLVRVKQLRPVVMAILRNTTHIDDKYLRVLVRDRELYKDTDTEVKRQIWKDNQS 60
+L+KSF LV++ L+PVVM ++++ + +K L++++ D+ELY+ EVKRQIW+DNQ+
Sbjct: 96 LLEKSFSLVKMPSLQPVVMCVMKHLPKVPEKKLKLVMADKELYRACAVEVKRQIWQDNQA 155
Query: 61 LFGDEVSPLLSQYIREKENILF 82
LFGDEVSPLL QYI EKE+ LF
Sbjct: 156 LFGDEVSPLLKQYIVEKESALF 177
Score = 78 (32.5 bits), Expect = 1.0e-21, Sum P(2) = 1.0e-21
Identities = 13/34 (38%), Positives = 25/34 (73%)
Query: 104 LDSQVVTKFVPALMSLMVDDQVRALNSKMPPDER 137
++ ++VT+F+P LMS +VDD ++ K+P +E+
Sbjct: 365 MEVELVTRFLPMLMSFVVDDHTFNVDQKLPAEEK 398
>RGD|1307832 [details] [associations]
symbol:Nelfb "negative elongation factor complex member B"
species:10116 "Rattus norvegicus" [GO:0003746 "translation
elongation factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0032021
"NELF complex" evidence=IEA;ISO] [GO:0045892 "negative regulation
of transcription, DNA-dependent" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR010405 Pfam:PF06209
RGD:1307832 GO:GO:0005737 GO:GO:0045892 GO:GO:0003746 EMBL:CH474001
GO:GO:0032021 GeneTree:ENSGT00390000012665 KO:K15180 OMA:EQLDHRK
PANTHER:PTHR13503 CTD:25920 OrthoDB:EOG4MGS77 IPI:IPI00371908
RefSeq:NP_001101287.2 UniGene:Rn.8119 Ensembl:ENSRNOT00000012978
GeneID:311796 KEGG:rno:311796 UCSC:RGD:1307832 NextBio:664182
Uniprot:D4ACV0
Length = 580
Score = 649 (233.5 bits), Expect = 1.9e-87, Sum P(2) = 1.9e-87
Identities = 139/283 (49%), Positives = 183/283 (64%)
Query: 147 SGRFNRIGEVVQKLAHMIGSSVKLYDMVLQFLRTLFLRTHNVHYCTLRAELLMALHDLEI 206
S + R GEVVQKL M+G +VKLYDMVLQFLRTLFLRT NVHYCTLRAELLM+LHDL++
Sbjct: 191 SPKTRRQGEVVQKLTQMVGKNVKLYDMVLQFLRTLFLRTRNVHYCTLRAELLMSLHDLDV 250
Query: 207 QDIISVDPCHKFTWCLDACIREKNVDIKRSRELQGFLDSIKRGHEQVLGDLSMTLCDPYA 266
DI +VDPCHKFTWCLDACIRE+ VD KR+RELQGFLD +K+G EQVLGDLSM LCDP+A
Sbjct: 251 SDICTVDPCHKFTWCLDACIRERFVDSKRARELQGFLDGVKKGQEQVLGDLSMILCDPFA 310
Query: 267 INFLATSAMKILHYLINNEALPRENTVXXXXXXXXXXXXSAWVMIDTQGGNILIEIFRSC 326
IN L+ S ++ L L++ E LPR++ AW +ID+Q +F+
Sbjct: 311 INTLSLSTIRHLQELVSQETLPRDSPDLLLLLRLLALGQGAWDLIDSQ-------VFKEP 363
Query: 327 FKLYDMVLQFLRTL--FL---RTHNVHY-----------WP--VPDAVQAYVQESSVACI 368
+++ +FL L F+ T NV +P +P++ ++QE +AC
Sbjct: 364 KMEAELITKFLPMLMSFVVDDYTFNVDQKLPAEEKAPVTYPNTLPESFTKFLQEQRMACE 423
Query: 369 ISMYYTLHTARSRDRVGLMRVLGVLATSESDRAFDDPFLHFLS 411
+ +YY LH + R++ L+R+L L + D AF D FLH L+
Sbjct: 424 VGLYYVLHITKQRNKNALLRLLPGLVETFGDLAFSDIFLHLLT 466
Score = 244 (91.0 bits), Expect = 1.9e-87, Sum P(2) = 1.9e-87
Identities = 45/82 (54%), Positives = 65/82 (79%)
Query: 1 MLKKSFPLVRVKQLRPVVMAILRNTTHIDDKYLRVLVRDRELYKDTDTEVKRQIWKDNQS 60
+L+KSF LV++ L+PVVM ++++ + +K L++++ D+ELY+ EVKRQIW+DNQ+
Sbjct: 96 LLEKSFSLVKMPSLQPVVMCVMKHLPKVPEKKLKLVMADKELYRACAVEVKRQIWQDNQA 155
Query: 61 LFGDEVSPLLSQYIREKENILF 82
LFGDEVSPLL QYI EKE+ LF
Sbjct: 156 LFGDEVSPLLKQYILEKESALF 177
Score = 82 (33.9 bits), Expect = 3.0e-22, Sum P(2) = 3.0e-22
Identities = 13/34 (38%), Positives = 26/34 (76%)
Query: 104 LDSQVVTKFVPALMSLMVDDQVRALNSKMPPDER 137
++++++TKF+P LMS +VDD ++ K+P +E+
Sbjct: 365 MEAELITKFLPMLMSFVVDDYTFNVDQKLPAEEK 398
>UNIPROTKB|E2QX07 [details] [associations]
symbol:COBRA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0032021 "NELF complex" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR010405 Pfam:PF06209 GO:GO:0005737 GO:GO:0045892
GO:GO:0032021 GeneTree:ENSGT00390000012665 KO:K15180 OMA:EQLDHRK
PANTHER:PTHR13503 CTD:25920 EMBL:AAEX03006730 EMBL:AAEX03006731
RefSeq:XP_548351.2 Ensembl:ENSCAFT00000030929 GeneID:491230
KEGG:cfa:491230 NextBio:20864107 Uniprot:E2QX07
Length = 580
Score = 649 (233.5 bits), Expect = 1.9e-87, Sum P(2) = 1.9e-87
Identities = 140/282 (49%), Positives = 181/282 (64%)
Query: 147 SGRFNRIGEVVQKLAHMIGSSVKLYDMVLQFLRTLFLRTHNVHYCTLRAELLMALHDLEI 206
S + R GEVVQKL M+G +VKLYDMVLQFLRTLFLRT NVHYCTLRAELLM+LH+L++
Sbjct: 191 SPKARRQGEVVQKLTQMVGKNVKLYDMVLQFLRTLFLRTRNVHYCTLRAELLMSLHELDV 250
Query: 207 QDIISVDPCHKFTWCLDACIREKNVDIKRSRELQGFLDSIKRGHEQVLGDLSMTLCDPYA 266
DI SVDPCHKFTWCLDACIRE+ VD KR+RELQGFLD +K+G EQVLGDLSM LCDP+A
Sbjct: 251 GDICSVDPCHKFTWCLDACIRERFVDSKRARELQGFLDGVKKGQEQVLGDLSMILCDPFA 310
Query: 267 INFLATSAMKILHYLINNEALPRENTVXXXXXXXXXXXXSAWVMIDTQGGNILIEIFRSC 326
IN L+ S ++ L L+ E LPR++ AW MID+Q +F+
Sbjct: 311 INTLSLSTVRHLQELVGQETLPRDSPDLLLLLRLLALGQGAWDMIDSQ-------VFKEP 363
Query: 327 FKLYDMVLQFLRTL--FL---RTHNVHY-----------WP--VPDAVQAYVQESSVACI 368
+++ +FL L F+ T NV +P +P++ ++QE +AC
Sbjct: 364 KMEVELITRFLPMLMSFVVDDHTFNVDQKLPAEEKAPVTYPNTLPESFTKFLQEQRMACE 423
Query: 369 ISMYYTLHTARSRDRVGLMRVLGVLATSESDRAFDDPFLHFL 410
+ +YY LH + R++ L+R+L L + D AF D FLH L
Sbjct: 424 VGLYYVLHITKQRNKNALLRLLPGLVETFGDLAFGDIFLHLL 465
Score = 244 (91.0 bits), Expect = 1.9e-87, Sum P(2) = 1.9e-87
Identities = 45/82 (54%), Positives = 65/82 (79%)
Query: 1 MLKKSFPLVRVKQLRPVVMAILRNTTHIDDKYLRVLVRDRELYKDTDTEVKRQIWKDNQS 60
+L+KSF LV++ L+PVVM ++++ + +K L++++ D+ELY+ EVKRQIW+DNQ+
Sbjct: 96 LLEKSFSLVKMPSLQPVVMCVMKHLPKVPEKKLKLVMADKELYRACAVEVKRQIWQDNQA 155
Query: 61 LFGDEVSPLLSQYIREKENILF 82
LFGDEVSPLL QYI EKE+ LF
Sbjct: 156 LFGDEVSPLLKQYILEKESALF 177
Score = 77 (32.2 bits), Expect = 9.9e-22, Sum P(2) = 9.9e-22
Identities = 12/34 (35%), Positives = 25/34 (73%)
Query: 104 LDSQVVTKFVPALMSLMVDDQVRALNSKMPPDER 137
++ +++T+F+P LMS +VDD ++ K+P +E+
Sbjct: 365 MEVELITRFLPMLMSFVVDDHTFNVDQKLPAEEK 398
>UNIPROTKB|Q8WX92 [details] [associations]
symbol:NELFB "Negative elongation factor B" species:9606
"Homo sapiens" [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0032021 "NELF complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR010405
Pfam:PF06209 GO:GO:0005737 Reactome:REACT_116125 GO:GO:0045892
GO:GO:0016032 GO:GO:0006368 Reactome:REACT_1788 GO:GO:0050434
Reactome:REACT_1892 EMBL:BX255925 GO:GO:0032021 eggNOG:NOG69243
KO:K15180 OMA:EQLDHRK PANTHER:PTHR13503 EMBL:AF464935 EMBL:AK022651
EMBL:AK091056 EMBL:BC011892 EMBL:AL050280 EMBL:AB033008
IPI:IPI00103483 PIR:T08747 RefSeq:NP_056271.2 UniGene:Hs.521809
ProteinModelPortal:Q8WX92 DIP:DIP-32670N IntAct:Q8WX92
MINT:MINT-1033357 STRING:Q8WX92 PhosphoSite:Q8WX92 DMDM:38372378
PaxDb:Q8WX92 PeptideAtlas:Q8WX92 PRIDE:Q8WX92 DNASU:25920
Ensembl:ENST00000343053 GeneID:25920 KEGG:hsa:25920 UCSC:uc004cmm.4
CTD:25920 GeneCards:GC09P140149 HGNC:HGNC:24324 HPA:HPA020259
MIM:611180 neXtProt:NX_Q8WX92 PharmGKB:PA162382703
HOGENOM:HOG000231489 HOVERGEN:HBG052596 InParanoid:Q8WX92
OrthoDB:EOG4MGS77 PhylomeDB:Q8WX92 ChiTaRS:COBRA1 GenomeRNAi:25920
NextBio:47437 Bgee:Q8WX92 CleanEx:HS_COBRA1 Genevestigator:Q8WX92
GermOnline:ENSG00000188986 Uniprot:Q8WX92
Length = 580
Score = 648 (233.2 bits), Expect = 2.4e-87, Sum P(2) = 2.4e-87
Identities = 140/283 (49%), Positives = 182/283 (64%)
Query: 147 SGRFNRIGEVVQKLAHMIGSSVKLYDMVLQFLRTLFLRTHNVHYCTLRAELLMALHDLEI 206
S + R GEVVQ+L M+G +VKLYDMVLQFLRTLFLRT NVHYCTLRAELLM+LHDL++
Sbjct: 191 SPKTRRQGEVVQRLTRMVGKNVKLYDMVLQFLRTLFLRTRNVHYCTLRAELLMSLHDLDV 250
Query: 207 QDIISVDPCHKFTWCLDACIREKNVDIKRSRELQGFLDSIKRGHEQVLGDLSMTLCDPYA 266
+I +VDPCHKFTWCLDACIRE+ VD KR+RELQGFLD +K+G EQVLGDLSM LCDP+A
Sbjct: 251 GEICTVDPCHKFTWCLDACIRERFVDSKRARELQGFLDGVKKGQEQVLGDLSMILCDPFA 310
Query: 267 INFLATSAMKILHYLINNEALPRENTVXXXXXXXXXXXXSAWVMIDTQGGNILIEIFRSC 326
IN LA S ++ L L+ E LPR++ AW MID+Q +F+
Sbjct: 311 INTLALSTVRHLQELVGQETLPRDSPDLLLLLRLLALGQGAWDMIDSQ-------VFKEP 363
Query: 327 FKLYDMVLQFLRTL--FL---RTHNVHY-----------WP--VPDAVQAYVQESSVACI 368
+++ +FL L FL T NV +P +P++ ++QE +AC
Sbjct: 364 KMEVELITRFLPMLMSFLVDDYTFNVDQKLPAEEKAPVSYPNTLPESFTKFLQEQRMACE 423
Query: 369 ISMYYTLHTARSRDRVGLMRVLGVLATSESDRAFDDPFLHFLS 411
+ +YY LH + R++ L+R+L L + D AF D FLH L+
Sbjct: 424 VGLYYVLHITKQRNKNALLRLLPGLVETFGDLAFGDIFLHLLT 466
Score = 244 (91.0 bits), Expect = 2.4e-87, Sum P(2) = 2.4e-87
Identities = 45/82 (54%), Positives = 65/82 (79%)
Query: 1 MLKKSFPLVRVKQLRPVVMAILRNTTHIDDKYLRVLVRDRELYKDTDTEVKRQIWKDNQS 60
+L+KSF LV++ L+PVVM ++++ + +K L++++ D+ELY+ EVKRQIW+DNQ+
Sbjct: 96 LLEKSFSLVKMPSLQPVVMCVMKHLPKVPEKKLKLVMADKELYRACAVEVKRQIWQDNQA 155
Query: 61 LFGDEVSPLLSQYIREKENILF 82
LFGDEVSPLL QYI EKE+ LF
Sbjct: 156 LFGDEVSPLLKQYILEKESALF 177
Score = 77 (32.2 bits), Expect = 9.9e-22, Sum P(2) = 9.9e-22
Identities = 12/34 (35%), Positives = 25/34 (73%)
Query: 104 LDSQVVTKFVPALMSLMVDDQVRALNSKMPPDER 137
++ +++T+F+P LMS +VDD ++ K+P +E+
Sbjct: 365 MEVELITRFLPMLMSFLVDDYTFNVDQKLPAEEK 398
>MGI|MGI:1931035 [details] [associations]
symbol:Nelfb "negative elongation factor complex member B,
Cobra1" species:10090 "Mus musculus" [GO:0005634 "nucleus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0032021 "NELF complex"
evidence=ISO] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR010405 Pfam:PF06209
MGI:MGI:1931035 GO:GO:0005737 GO:GO:0045892 GO:GO:0006351
GO:GO:0032021 eggNOG:NOG69243 GeneTree:ENSGT00390000012665
KO:K15180 OMA:EQLDHRK PANTHER:PTHR13503 CTD:25920
HOGENOM:HOG000231489 HOVERGEN:HBG052596 OrthoDB:EOG4MGS77
EMBL:AB041607 EMBL:BC004762 EMBL:AK080419 IPI:IPI00277028
RefSeq:NP_067368.2 UniGene:Mm.116418 STRING:Q8C4Y3
PhosphoSite:Q8C4Y3 PaxDb:Q8C4Y3 PRIDE:Q8C4Y3
Ensembl:ENSMUST00000059849 GeneID:58202 KEGG:mmu:58202
InParanoid:Q8C4Y3 NextBio:314181 Bgee:Q8C4Y3 CleanEx:MM_COBRA1
Genevestigator:Q8C4Y3 GermOnline:ENSMUSG00000013465 Uniprot:Q8C4Y3
Length = 580
Score = 647 (232.8 bits), Expect = 3.1e-87, Sum P(2) = 3.1e-87
Identities = 138/283 (48%), Positives = 181/283 (63%)
Query: 147 SGRFNRIGEVVQKLAHMIGSSVKLYDMVLQFLRTLFLRTHNVHYCTLRAELLMALHDLEI 206
S + R GEVVQKL M+G +VKLYDMVLQFLRTLFLRT NVHYCTLRAELLM+LHDL++
Sbjct: 191 SPKTRRQGEVVQKLTQMVGKNVKLYDMVLQFLRTLFLRTRNVHYCTLRAELLMSLHDLDV 250
Query: 207 QDIISVDPCHKFTWCLDACIREKNVDIKRSRELQGFLDSIKRGHEQVLGDLSMTLCDPYA 266
DI +VDPCHKFTWCLDACIRE+ VD KR+RELQGFLD +K+G EQVLGDLSM LCDP+A
Sbjct: 251 SDICTVDPCHKFTWCLDACIRERFVDSKRARELQGFLDGVKKGQEQVLGDLSMILCDPFA 310
Query: 267 INFLATSAMKILHYLINNEALPRENTVXXXXXXXXXXXXSAWVMIDTQGGNILIEIFRSC 326
IN L+ S ++ L L++ E LPR++ AW +ID+Q +F+
Sbjct: 311 INTLSLSTIRHLQELVSQETLPRDSPDLLLLLRLLALGQGAWDLIDSQ-------VFKEP 363
Query: 327 FKLYDMVLQFLRTLFLR-----THNVHY-----------WP--VPDAVQAYVQESSVACI 368
+++ +FL L T NV +P +P++ ++QE +AC
Sbjct: 364 KMEAELITKFLPMLMSLVVDDFTFNVDQKLPAEEKASVTYPNTLPESFTKFLQEQRMACE 423
Query: 369 ISMYYTLHTARSRDRVGLMRVLGVLATSESDRAFDDPFLHFLS 411
+ +YY LH + R++ L+R+L L + D AF D FLH L+
Sbjct: 424 VGLYYVLHITKQRNKNALLRLLPGLVETFGDLAFSDIFLHLLT 466
Score = 244 (91.0 bits), Expect = 3.1e-87, Sum P(2) = 3.1e-87
Identities = 45/82 (54%), Positives = 65/82 (79%)
Query: 1 MLKKSFPLVRVKQLRPVVMAILRNTTHIDDKYLRVLVRDRELYKDTDTEVKRQIWKDNQS 60
+L+KSF LV++ L+PVVM ++++ + +K L++++ D+ELY+ EVKRQIW+DNQ+
Sbjct: 96 LLEKSFSLVKMPSLQPVVMCVMKHLPKVPEKKLKLVMADKELYRACAVEVKRQIWQDNQA 155
Query: 61 LFGDEVSPLLSQYIREKENILF 82
LFGDEVSPLL QYI EKE+ LF
Sbjct: 156 LFGDEVSPLLKQYILEKESALF 177
Score = 87 (35.7 bits), Expect = 9.0e-23, Sum P(2) = 9.0e-23
Identities = 15/36 (41%), Positives = 28/36 (77%)
Query: 104 LDSQVVTKFVPALMSLMVDDQVRALNSKMPPDERES 139
++++++TKF+P LMSL+VDD ++ K+P +E+ S
Sbjct: 365 MEAELITKFLPMLMSLVVDDFTFNVDQKLPAEEKAS 400
>ZFIN|ZDB-GENE-040426-765 [details] [associations]
symbol:nelfb "negative elongation factor complex
member B" species:7955 "Danio rerio" [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR010405 Pfam:PF06209
ZFIN:ZDB-GENE-040426-765 GO:GO:0005634 GO:GO:0045892
eggNOG:NOG69243 PANTHER:PTHR13503 HOGENOM:HOG000231489
HOVERGEN:HBG052596 EMBL:AY391416 IPI:IPI00509943 UniGene:Dr.79678
STRING:Q6TNV1 PRIDE:Q6TNV1 NextBio:20814209 ArrayExpress:Q6TNV1
Bgee:Q6TNV1 Uniprot:Q6TNV1
Length = 594
Score = 638 (229.6 bits), Expect = 1.3e-86, Sum P(2) = 1.3e-86
Identities = 139/284 (48%), Positives = 174/284 (61%)
Query: 147 SGRFNRIGEVVQKLAHMIGSSVKLYDMVLQFLRTLFLRTHNVHYCTLRAELLMALHDLEI 206
S + R GEVV KL MIG +VKLYDMVLQFLRTLFLRT NVHYCTLRAELLM+LHDL+I
Sbjct: 190 SPKTRRQGEVVLKLTQMIGKNVKLYDMVLQFLRTLFLRTRNVHYCTLRAELLMSLHDLDI 249
Query: 207 QDIISVDPCHKFTWCLDACIREKNVDIKRSRELQGFLDSIKRGHEQVLGDLSMTLCDPYA 266
+I SVDPCHKF+WCLDACIREK VD KR+RELQGFLD +K+G EQVLGDLSM LCDP+A
Sbjct: 250 SEICSVDPCHKFSWCLDACIREKFVDAKRARELQGFLDGVKKGQEQVLGDLSMILCDPFA 309
Query: 267 INFLATSAMKILHYLINNEALPRENTVXXXXXXXXXXXXSAWVMIDTQ---------GGN 317
N L S ++ L L++ +ALPR++ AW MID+Q GG
Sbjct: 310 CNTLVLSTVRNLQELLSKDALPRDSPDLSPPAAVLSLGQGAWDMIDSQVFKEPRMDLGGG 369
Query: 318 ILIEIFRSC--------FKLYDMVLQFLRTLFLRTHNVHYWPVPDAVQAYVQESSVACII 369
+ C F + L RT +P+ ++ ++ VAC I
Sbjct: 370 DTLSACHECHSGGTNSTFNGEPKPGRAKEKLLSRTPTT----LPETFSRFILDNRVACEI 425
Query: 370 SMYYTLHTARSRDRVGLMRVLGVLATSESDRAFDDPFLHFLSSY 413
+YY LH A+ R++ L R+L L + +D AF D FLH L+ +
Sbjct: 426 GLYYALHIAKLRNKNALQRLLPALVDTYNDMAFGDIFLHLLTGH 469
Score = 247 (92.0 bits), Expect = 1.3e-86, Sum P(2) = 1.3e-86
Identities = 47/84 (55%), Positives = 65/84 (77%)
Query: 1 MLKKSFPLVRVKQLRPVVMAILRNTTHIDDKYLRVLVRDRELYKDTDTEVKRQIWKDNQS 60
+L+KSFPLV++ ++PVVM +L++ + +K L+ ++ D+ELYK EVKRQIW+DNQ+
Sbjct: 95 LLEKSFPLVKMPSIQPVVMQVLKHLPKVPEKKLKQVMADKELYKVCAVEVKRQIWQDNQA 154
Query: 61 LFGDEVSPLLSQYIREKENILFDH 84
LFGDEVSPLL QYI EKE LF +
Sbjct: 155 LFGDEVSPLLKQYIVEKEAALFSN 178
Score = 39 (18.8 bits), Expect = 4.4e-18, Sum P(2) = 4.4e-18
Identities = 13/26 (50%), Positives = 13/26 (50%)
Query: 177 FLRTLFLRTHNVHYCTLRAELLMALH 202
FL T F NVH LR LL LH
Sbjct: 490 FLLTSFSSKENVHRHCLR--LLNHLH 513
>UNIPROTKB|D4A2H9 [details] [associations]
symbol:Cobra1 "Protein Cobra1" species:10116 "Rattus
norvegicus" [GO:0005634 "nucleus" evidence=IEA] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR010405 Pfam:PF06209 RGD:1307832 GO:GO:0005634
GO:GO:0045892 PANTHER:PTHR13503 IPI:IPI00947907
Ensembl:ENSRNOT00000064440 ArrayExpress:D4A2H9 Uniprot:D4A2H9
Length = 286
Score = 556 (200.8 bits), Expect = 6.1e-60, Sum P(2) = 6.1e-60
Identities = 104/160 (65%), Positives = 125/160 (78%)
Query: 155 EVVQKLAHMIGSSVKLYDMVLQFLRTLFLRTHNVHYCTLRAELLMALHDLEIQDIISVDP 214
+VVQKL M+G +VKLYDMVLQFLRTLFLRT NVHYCTLRAELLM+LHDL++ DI +VDP
Sbjct: 122 KVVQKLTQMVGKNVKLYDMVLQFLRTLFLRTRNVHYCTLRAELLMSLHDLDVSDICTVDP 181
Query: 215 CHKFTWCLDACIREKNVDIKRSRELQGFLDSIKRGHEQVLGDLSMTLCDPYAINFLATSA 274
CHKFTWCLDACIRE+ VD KR+RELQGFLD +K+G EQVLGDLSM LCDP+AIN L+ S
Sbjct: 182 CHKFTWCLDACIRERFVDSKRARELQGFLDGVKKGQEQVLGDLSMILCDPFAINTLSLST 241
Query: 275 MKILHYLINNEALPRENTVXXXXXXXXXXXXSAWVMIDTQ 314
++ L L++ E LPR++ AW +ID+Q
Sbjct: 242 IRHLQELVSQETLPRDSPDLLLLLRLLALGQGAWDLIDSQ 281
Score = 109 (43.4 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 21/22 (95%), Positives = 21/22 (95%)
Query: 328 KLYDMVLQFLRTLFLRTHNVHY 349
KLYDMVLQFLRTLFLRT NVHY
Sbjct: 136 KLYDMVLQFLRTLFLRTRNVHY 157
Score = 76 (31.8 bits), Expect = 6.1e-60, Sum P(2) = 6.1e-60
Identities = 14/43 (32%), Positives = 30/43 (69%)
Query: 1 MLKKSFPLVRVKQLRPVVMAILRNTTHIDDKYLRVLVRDRELY 43
+L+KSF LV++ L+PVVM ++++ + K +++ ++ +LY
Sbjct: 96 LLEKSFSLVKMPSLQPVVMCVMKHLPKVVQKLTQMVGKNVKLY 138
>DICTYBASE|DDB_G0284195 [details] [associations]
symbol:DDB_G0284195 "cofactor of BRCA1 family
protein" species:44689 "Dictyostelium discoideum" [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR010405 Pfam:PF06209
dictyBase:DDB_G0284195 GO:GO:0005634 GO:GO:0045892
EMBL:AAFI02000064 eggNOG:NOG69243 KO:K15180 PANTHER:PTHR13503
RefSeq:XP_638637.1 EnsemblProtists:DDB0185887 GeneID:8624468
KEGG:ddi:DDB_G0284195 InParanoid:Q54Q08 OMA:AKRRENN Uniprot:Q54Q08
Length = 854
Score = 237 (88.5 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 46/138 (33%), Positives = 78/138 (56%)
Query: 156 VVQKLAHMIGS-SVKLYDMVLQFLRTLFLRTHNVHYCTLRAELLMALHDLEIQDIISVDP 214
V+Q++ + G+ S LY M + ++ F + N C LRAE+LMA+HD I +I D
Sbjct: 203 VLQEMVELFGTKSPDLYQMFINQIKRSFADSGNYLLCNLRAEILMAIHDKSIPEIYDTDA 262
Query: 215 CHKFTWCLDACIREKNVDIKRSRELQGFLDS-IKRGHEQVLGDLSMTLCDPYAINFLATS 273
H WCLDACIR+ +D +R +E+Q L S + + LGD +M +P A+N + +
Sbjct: 263 SHNIAWCLDACIRDNTLDARRIKEIQTNLSSSVHHQNSSTLGDTAMVFANPIAVNCIVRN 322
Query: 274 AMKILHYLINNEALPREN 291
+ L ++ + +P+++
Sbjct: 323 ILIQLKEVVKRKQIPKDD 340
Score = 138 (53.6 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 26/77 (33%), Positives = 48/77 (62%)
Query: 1 MLKKSFPLVRVKQLRPVVMAILRNTT-HIDDKYLRVLVRDRELYKDTDTEVKRQIWKDNQ 59
+L+++FP + ++L+ + M +++ T + +L L ELY+ EVKRQIW N+
Sbjct: 89 LLEQTFPYIGFEELQEIPMNVMKRLTPEVPVAFLLKLAEAEELYEQCPIEVKRQIWIVNE 148
Query: 60 SLFGDEVSPLLSQYIRE 76
LF +++ PL++QYI +
Sbjct: 149 ELFKEKIKPLINQYIED 165
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.326 0.138 0.417 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 443 418 0.00082 118 3 11 22 0.45 33
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 12
No. of states in DFA: 623 (66 KB)
Total size of DFA: 275 KB (2145 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 33.49u 0.08s 33.57t Elapsed: 00:00:36
Total cpu time: 33.49u 0.08s 33.57t Elapsed: 00:00:36
Start: Thu Aug 15 13:59:36 2013 End: Thu Aug 15 14:00:12 2013