RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4191
(443 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 58.7 bits (141), Expect = 2e-09
Identities = 72/472 (15%), Positives = 140/472 (29%), Gaps = 111/472 (23%)
Query: 6 FPLVRVKQLRPVVMAILRNTTHIDDKY------LRVLVRDRELYKDTDTEVKRQIWKDNQ 59
F + KQ V + + Y ++ R + E + +++ DNQ
Sbjct: 68 FWTLLSKQEEMVQKFV---EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 60 SLFGDEVSPLLSQYIREKENILFDHHNLTNLFFFPTPKEFKEPKLDSQVVT-------KF 112
VS R + + L E + V+ K
Sbjct: 125 VFAKYNVS-------RLQP-----YLKLRQA--------LLELRPAKNVLIDGVLGSGKT 164
Query: 113 VPALMSLMVDDQVRALNSKMPPDERESAITIIEHSGRFNRIGEVVQKLAHMIGSSVKLYD 172
AL + ++ K+ + + N V++ L ++ +
Sbjct: 165 WVALDVCLSYKVQCKMDFKI------FWLNL----KNCNSPETVLEMLQKLLYQIDPNWT 214
Query: 173 MVLQFLRTLFLRTHNVHYCTLRAEL--LMALHDLEIQDIISVDPCHKFTWCLDA----CI 226
+ LR H+ ++AEL L+ E ++ ++ + +A C
Sbjct: 215 SRSDHSSNIKLRIHS-----IQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAFNLSC- 266
Query: 227 REKNVDIKRSRELQGFLDSIKRGHEQVLGDLSMTLCDPYAINFLATSAMKILHYLINNEA 286
K + R +++ FL + H L SMTL + L K L +
Sbjct: 267 --KILLTTRFKQVTDFLSAATTTHI-SLDHHSMTLTPDEVKSLLL----KYLD--CRPQD 317
Query: 287 LPRE-NTVLVLLLRMLALGLSA-------WVMIDTQGGNILIEIFRSCFKLYDMVLQFLR 338
LPRE T L ++A + W ++ +IE + + + +
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY-RKMFD 376
Query: 339 TLFLRTHNVH--------YW--PVPDAVQAYVQESSVACII-----SMYYTLHTARSRDR 383
L + + H W + V V + ++ ++
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP------- 429
Query: 384 VGLMRVLGVLATSESDRAFDDPFLH--FLSSYEISL-WTSLNWQRVWLRHYF 432
+ L E++ A LH + Y I + S + +L YF
Sbjct: 430 -SIYLEL--KVKLENEYA-----LHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473
Score = 36.4 bits (83), Expect = 0.020
Identities = 38/277 (13%), Positives = 78/277 (28%), Gaps = 57/277 (20%)
Query: 171 YDMVLQFLRTLFLRTHNVHYCTLRAELLMALHDLEIQDIISVDPCHKFTWCLDACIREKN 230
Y +L F+ + ++ L EI II T L + K
Sbjct: 18 YKDILSVFEDAFVDNFDCKD--VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ 75
Query: 231 VDIKRSRELQGFL-DSIKRGHEQVLGDLSMTLCDPYAINFLATSAMKILHYLINNEAL-- 287
+Q F+ + ++ ++ ++ + P + + L+ +N+
Sbjct: 76 -----EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN--DNQVFAK 128
Query: 288 ---PRENTVLVLLLRMLALGLSAWVMIDTQGGNILIEIFRSCFK--LYDMVLQFLRTLFL 342
R L L +L L + V+ID G K + V +
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLG---------SGKTWVALDVCLSYKVQCK 179
Query: 343 RTHNVHYWPVPDAVQAYVQESSVACIISMYYTLHTARSRDRVGLMRVLGVLATSESDRAF 402
+ +W L+ ++ +L L
Sbjct: 180 MDFKI-FW------------------------LNLKNCNSPETVLEMLQKLLYQI----- 209
Query: 403 DDPFLHFLSSYEISLWTSLNWQRVWLRHYFQTSPKRN 439
DP S + ++ ++ + LR ++ P N
Sbjct: 210 -DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.0 bits (137), Expect = 9e-09
Identities = 63/358 (17%), Positives = 115/358 (32%), Gaps = 108/358 (30%)
Query: 113 VPALMSLMVDDQVRA-LNSKMPPDERESA-----ITIIEHSGRFNRIGEVVQKLAHMIGS 166
VP + Q++ N +P A T E G+F +G V + S
Sbjct: 22 VPTAS-FFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKF--LGYVSSLVE---PS 75
Query: 167 SVKLYDMVLQ-----FLRTLFLRTHNVHYCTLRAELLMALHD--LEIQDIISVDPCHKFT 219
V +D VL F +L +++H L A+LL ++ +++I
Sbjct: 76 KVGQFDQVLNLCLTEFENC-YLEGNDIH--ALAAKLLQENDTTLVKTKELIK-------- 124
Query: 220 WC-LDACIREKNVDIKRSRELQGFLDSIKRGHEQVLGDLSMTLCDPYAI-----NFLATS 273
+ A I K K+S ++ G+ Q+ AI N
Sbjct: 125 -NYITARIMAKRPFDKKSNSA--LFRAVGEGNAQL-----------VAIFGGQGN----- 165
Query: 274 AMKILHYLINNEALPRE-----NTVLVLLLRMLALGLSAWVMIDTQGGNILIEIFRSCFK 328
Y E L R+ + ++ L++ A LS LI K
Sbjct: 166 ---TDDYF--EE-L-RDLYQTYHVLVGDLIKFSAETLSE-----------LIRTTLDAEK 207
Query: 329 LYDMVLQFLRTLFLRTHNVHYWPVPDAVQAYVQESSVAC-IISMYYTLH---TARS---- 380
++ L L +L + PD + Y+ ++C +I + H TA+
Sbjct: 208 VFTQGLNILE--WLENPS----NTPD--KDYLLSIPISCPLIGVIQLAHYVVTAKLLGFT 259
Query: 381 ----RDRV-GL-MRVLGVL-----ATSESDRAFDDPFLHFLSSYEISLWTSLNWQRVW 427
R + G G++ A ++S +F + + + + +
Sbjct: 260 PGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI---TVLFFIGVRCYEAY 314
Score = 41.2 bits (96), Expect = 7e-04
Identities = 56/316 (17%), Positives = 81/316 (25%), Gaps = 146/316 (46%)
Query: 5 SFPLVRVKQL------------RP----------------VVMAIL-------RNTTHID 29
S PL+ V QL P +V A+ +
Sbjct: 237 SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSV 296
Query: 30 DKYLRVL----VRDRELY----------KD------------------TDTEVKRQIWKD 57
K + VL VR E Y +D T +V+ + K
Sbjct: 297 RKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT 356
Query: 58 NQSLFGDE-VSPLLSQYIREKENILFDHHNLTNLFFFPTPKEFKEPKLDSQVVTKFVPAL 116
N L + V +S L N K VV+ +L
Sbjct: 357 NSHLPAGKQVE--IS---------------LVN-----GAKNL--------VVSGPPQSL 386
Query: 117 MSLMV----------DDQVRALNSKMPPDERESAITIIEHSGRFNRIGEVVQKLAHMIGS 166
L + DQ S++P ER+ S RF + H S
Sbjct: 387 YGLNLTLRKAKAPSGLDQ-----SRIPFSERKLKF-----SNRFLPVASPF----H---S 429
Query: 167 S--VKLYDMVLQFL--RTLFLRTHNVH---YCT-----LRAELLMALHDLEIQDIISVDP 214
V D++ + L + ++ Y T LR + D I P
Sbjct: 430 HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERI--VDCIIRLP 487
Query: 215 CH-------KFTWCLD 223
K T LD
Sbjct: 488 VKWETTTQFKATHILD 503
Score = 40.4 bits (94), Expect = 0.001
Identities = 45/247 (18%), Positives = 69/247 (27%), Gaps = 96/247 (38%)
Query: 87 LTNLFF--------FPTPKEFKEPKL--DSQVVTKFVPALMSLMV--------DDQVRAL 128
+T LFF +P P + DS + VP+ M L + D V
Sbjct: 300 ITVLFFIGVRCYEAYPNT--SLPPSILEDSLENNEGVPSPM-LSISNLTQEQVQDYVNKT 356
Query: 129 NSKMPPDERESAITIIEHSGRFNRIGEVVQKLAHMIGSSVKLYDMVLQFLRTL------- 181
NS +P ++ + I +G N VV G LY + L LR
Sbjct: 357 NSHLPAGKQ---VEISLVNGAKNL---VVS------GPPQSLYGLNLT-LRKAKAPSGLD 403
Query: 182 ----------------FLRT----HNVHYCTLRAELLMALHDLEIQDIISVDPC------ 215
FL H+ H L + DL + +S +
Sbjct: 404 QSRIPFSERKLKFSNRFLPVASPFHS-HL--LVPASDLINKDLVKNN-VSFNAKDIQIPV 459
Query: 216 -HKFTWCLDACIREKNVDIKRSRELQGFLDSIKRGHEQVLGDLSMTLCDPYAINFLATSA 274
F +L+ SI + + P + + T+
Sbjct: 460 YDTFDG----------------SDLRVLSGSISERI------VDCIIRLP--VKWETTTQ 495
Query: 275 MKILHYL 281
K H L
Sbjct: 496 FKATHIL 502
Score = 39.6 bits (92), Expect = 0.002
Identities = 14/115 (12%), Positives = 42/115 (36%), Gaps = 22/115 (19%)
Query: 329 LYDMVLQFLRTLFLRTHNVHYWPVPDAVQAYVQE---SSVACIISMYYTL-HTARSRDRV 384
+ + Q L+ F + +P+ + + + ++ A ++ + L + + +
Sbjct: 26 SFFIASQ-LQEQFNKI-------LPEPTEGFAADDEPTTPAELVGKF--LGYVSSLVEPS 75
Query: 385 GLMRVLGVLATSESDRAFDDPFL-----H-FLSSYEISLWTSLNWQRVWLRHYFQ 433
+ + VL F++ +L H + T+L + +++Y
Sbjct: 76 KVGQFDQVLNLCL--TEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYIT 128
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 1.1
Identities = 7/23 (30%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 51 KRQIWKDNQSL--FGDEVSPLLS 71
K+ + K SL + D+ +P L+
Sbjct: 19 KQALKKLQASLKLYADDSAPALA 41
Score = 29.1 bits (64), Expect = 1.5
Identities = 6/15 (40%), Positives = 10/15 (66%), Gaps = 4/15 (26%)
Query: 157 VQKLAHMIGSSVKLY 171
++KL +S+KLY
Sbjct: 22 LKKLQ----ASLKLY 32
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation,
kinase domain ubiquitin-like domain, kinase, substrate
binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Length = 676
Score = 30.4 bits (68), Expect = 1.4
Identities = 25/167 (14%), Positives = 49/167 (29%), Gaps = 27/167 (16%)
Query: 41 ELYKDTDTEVKRQIWKDNQSLFGDEVSPLLSQYIREKENILFDHHNLTNLFFFPTPKEFK 100
L +DT + Q L + PL +QY+ + I +F F K
Sbjct: 340 WLQQDTGIPEEEQELLQASGLALNSAQPL-TQYVIDCTVIDGRQGEGDLIFLFDNRKTVY 398
Query: 101 EPKLDSQVVTKFVPALMSLMVDDQVRALNSKMPPDERESAITIIEHSGRFNRIGEVVQKL 160
EP++ + V + + + + V ++
Sbjct: 399 EPQISLPAHPESV------------------------SIVLQDPKRPLTYTHLRRVWGQI 434
Query: 161 AHMIGSSVKLYDMVLQFLRT--LFLRTHNVHYCTLRAELLMALHDLE 205
I + + +LQ RT + L +N + + L+
Sbjct: 435 WQTIRALKEDCARLLQGQRTSMVNLLRYNTELSKKKNSMTSECEQLK 481
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2,
protein-UDP; ppgalnact, mucin, glycosyltransferase; HET:
UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Length = 501
Score = 29.0 bits (64), Expect = 3.8
Identities = 12/56 (21%), Positives = 22/56 (39%)
Query: 206 IQDIISVDPCHKFTWCLDACIREKNVDIKRSRELQGFLDSIKRGHEQVLGDLSMTL 261
I++II VD + + V + R+ +G + S RG + + L
Sbjct: 98 IKEIILVDDYSNDPEDGALLGKIEKVRVLRNDRREGLMRSRVRGADAAQAKVLTFL 153
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A
{Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Length = 287
Score = 28.4 bits (62), Expect = 5.0
Identities = 31/201 (15%), Positives = 68/201 (33%), Gaps = 9/201 (4%)
Query: 14 LRPVVMAILRNTTHID-DKYLRVLVRDRELYKDTDTEVKRQIWKDNQSLFGDEVSPLLSQ 72
+ N ID D + + EL K + +V + + + + ++S+
Sbjct: 50 RSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEA----IISR 105
Query: 73 YIREKENILFDHHNLTNLFFFPTPKEFKEPKLDSQVVTKFVPALMSLM-VDDQVRALNSK 131
+ N++ + T T + ++++ VP + S + ++ + +
Sbjct: 106 LSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMYAD 165
Query: 132 MPPDERESAITIIEHSGRFNRIGEVVQKLA-HMIGSSVKLYDMVLQFLRTLFLRTHNVHY 190
P R A H + ++ L + S ++LY+ L +
Sbjct: 166 DPMTAR--ATPKQAHDIVVKNLPTNLETLHKTGLFSDIRLYNREGVKLYSSLETPSISPK 223
Query: 191 CTLRAELLMALHDLEIQDIIS 211
TL EL + EIQ +
Sbjct: 224 ETLEKELNRKVSGKEIQPTLE 244
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix,
helix-turn-helix, ATP binding, Zn(2+) binding,
hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43
c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Length = 523
Score = 28.2 bits (64), Expect = 6.8
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 24/59 (40%)
Query: 113 VPALM------------SLMVDDQVRAL----------NSKMPPDERESAITIIEHSGR 149
+PAL+ SLM DQV L NS +++ +T +G+
Sbjct: 59 IPALLLNGLTVVVSPLISLM-KDQVDQLQANGVAAACLNSTQTREQQLEVMTGC-RTGQ 115
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 27.8 bits (61), Expect = 7.3
Identities = 33/198 (16%), Positives = 69/198 (34%), Gaps = 34/198 (17%)
Query: 27 HIDDKYLRVLVRDRELYKDTDTEVKRQIWKDNQ--------SLFGDEVSPLLSQYIR--- 75
+ID+++ E Y ++ + R+ DN+ S FG + PL +++
Sbjct: 102 YIDEQF--------ERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH 153
Query: 76 EKENILF-----DHHNLTNLFFFPTPKEFKEPKLDSQVVTKFVPALMSLMVDDQVRALNS 130
K NI+ D L K+ +++ + + D+ +
Sbjct: 154 NKVNIVPVIAKADTLTLKERERL---KKRILDEIEEHNIKIYHLPDAESDEDEDFKEQTR 210
Query: 131 KMPPDER---ESAITIIEHSGRFNRIGEVVQKLAHMIGSS----VKLYDMVLQFLRTLFL 183
+ + +IE G+ R + + +KL M++ ++ L
Sbjct: 211 LLKASIPFSVVGSNQLIEAKGKKVRGRLYPWGVVEVENPEHNDFLKLRTMLITHMQDLQE 270
Query: 184 RTHNVHYCTLRAELLMAL 201
T ++HY R+E L
Sbjct: 271 VTQDLHYENFRSERLKRG 288
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.139 0.420
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,744,996
Number of extensions: 400961
Number of successful extensions: 1194
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1182
Number of HSP's successfully gapped: 18
Length of query: 443
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 346
Effective length of database: 3,993,456
Effective search space: 1381735776
Effective search space used: 1381735776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (27.0 bits)