RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4191
         (443 letters)



>d1ih7a1 c.55.3.5 (A:1-375) Exonuclease domain of family B DNA
           polymerases {Bacteriophage RB69 [TaxId: 12353]}
          Length = 375

 Score = 28.3 bits (62), Expect = 1.8
 Identities = 22/174 (12%), Positives = 40/174 (22%), Gaps = 12/174 (6%)

Query: 59  QSLFGDEVSPLLSQYIRE-----KENILFDHHNLTNLFFFPTPKEFKEPKLDSQVVTKFV 113
             ++G   +  L   +R+     K         L    F                 TK  
Sbjct: 50  FDIYGKPCTRKLFANMRDASQWIKRMEDIGLEALGMDDFKLAYLSDTYNYEIKYDHTKIR 109

Query: 114 PALMSLMVDDQVRALNSKMPPDERESAITIIEHSGRFNRIGEVVQKLAH----MIGSSVK 169
            A   + V                ++         RF     +     +     I  + K
Sbjct: 110 VANFDIEVTSPDGFPEPSQAKHPIDAITHYDSIDDRFYVFDLLNSPYGNVEEWSIEIAAK 169

Query: 170 LYDMVLQFLRTLFLRTHNVHYCTLRAELLMALHDLEIQ---DIISVDPCHKFTW 220
           L +     + +  +            ELLM   +   Q    I++      F  
Sbjct: 170 LQEQGGDEVPSEIIDKIIYMPFDNEKELLMEYLNFWQQKTPVILTGWNVESFDI 223


>d2plsa1 d.145.1.4 (A:345-428) Hypothetical protein CT0541
           {Chlorobium tepidum [TaxId: 1097]}
          Length = 84

 Score = 24.6 bits (54), Expect = 7.8
 Identities = 8/51 (15%), Positives = 20/51 (39%), Gaps = 7/51 (13%)

Query: 113 VPALMSLMVDDQVRALNSKMPPDERESAIT-----IIEHSGRFNRIGEVVQ 158
           +  L+++   +    L  +  P+E +         I+   GR  + G++  
Sbjct: 11  LDGLIAV--PELKDTLGLRAVPEEEKGVYHTLSGMIMWLLGRLPQTGDITF 59


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.139    0.420 

Gapped
Lambda     K      H
   0.267   0.0702    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,641,327
Number of extensions: 75830
Number of successful extensions: 275
Number of sequences better than 10.0: 1
Number of HSP's gapped: 275
Number of HSP's successfully gapped: 8
Length of query: 443
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 355
Effective length of database: 1,199,356
Effective search space: 425771380
Effective search space used: 425771380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (24.6 bits)