BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy4192
         (317 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2WSS|S Chain S, The Structure Of The Membrane Extrinsic Region Of Bovine
           Atp Synthase
 pdb|2WSS|W Chain W, The Structure Of The Membrane Extrinsic Region Of Bovine
           Atp Synthase
          Length = 190

 Score =  109 bits (273), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 60/158 (37%), Positives = 89/158 (56%), Gaps = 18/158 (11%)

Query: 19  QLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISF------------------QK 60
           +LV+ PVQ++G +GRYATALYSAA+K  +L+ VEKEL+                    ++
Sbjct: 3   KLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVGQILKEPKXAASLLNPYVKR 62

Query: 61  SLKIEALKIVGQKKNFXXXXXXXXXXXXENGKIKNIDGVINNFSIIMAAHRGDLPVEVIT 120
           S+K+++L     K+ F            ENG++ N   VI+ FS   + HRG++P  V T
Sbjct: 63  SVKVKSLSDXTAKEKFSPLTSNLINLLAENGRLTNTPAVISAFSTXXSVHRGEVPCTVTT 122

Query: 121 ARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIG 158
           A  L+E   +EL++ LK F  KG+ + L  K+DPSI G
Sbjct: 123 ASALDETTLTELKTVLKSFLSKGQVLKLEVKIDPSIXG 160



 Score = 97.4 bits (241), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 50/122 (40%), Positives = 76/122 (62%), Gaps = 1/122 (0%)

Query: 184 QLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQ 243
           +LV+ PVQ++G +GRYATALYSAA+K  +L+ VEKEL+   Q LK + K    +L+P ++
Sbjct: 3   KLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVGQILK-EPKXAASLLNPYVK 61

Query: 244 KSLKIEALKIVGQKKNFXXXXXXXXXXXXENGKIKNIDGVINNFSIIMAAHRGDLPVEVI 303
           +S+K+++L     K+ F            ENG++ N   VI+ FS   + HRG++P  V 
Sbjct: 62  RSVKVKSLSDXTAKEKFSPLTSNLINLLAENGRLTNTPAVISAFSTXXSVHRGEVPCTVT 121

Query: 304 TA 305
           TA
Sbjct: 122 TA 123


>pdb|2BO5|A Chain A, Bovine Oligomycin Sensitivity Conferral Protein N-Terminal
           Domain
 pdb|2JMX|A Chain A, Oscp-Nt (1-120) In Complex With N-Terminal (1-25) Alpha
           Subunit From F1-Atpase
 pdb|4B2Q|W Chain W, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
           Subtomogram Average
 pdb|4B2Q|WW Chain w, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
           Subtomogram Average
          Length = 120

 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 49/119 (41%), Positives = 77/119 (64%), Gaps = 1/119 (0%)

Query: 184 QLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQ 243
           +LV+ PVQ++G +GRYATALYSAA+K  +L+ VEKEL+   Q LK + K    +L+P ++
Sbjct: 3   KLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVGQILK-EPKMAASLLNPYVK 61

Query: 244 KSLKIEALKIVGQKKNFXXXXXXXXXXXXENGKIKNIDGVINNFSIIMAAHRGDLPVEV 302
           +S+K+++L  +  K+ F            ENG++ N   VI+ FS +M+ HRG++P  V
Sbjct: 62  RSVKVKSLSDMTAKEKFSPLTSNLINLLAENGRLTNTPAVISAFSTMMSVHRGEVPCTV 120



 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 67/118 (56%), Gaps = 18/118 (15%)

Query: 19  QLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELIS------------------FQK 60
           +LV+ PVQ++G +GRYATALYSAA+K  +L+ VEKEL+                    ++
Sbjct: 3   KLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVGQILKEPKMAASLLNPYVKR 62

Query: 61  SLKIEALKIVGQKKNFXXXXXXXXXXXXENGKIKNIDGVINNFSIIMAAHRGDLPVEV 118
           S+K+++L  +  K+ F            ENG++ N   VI+ FS +M+ HRG++P  V
Sbjct: 63  SVKVKSLSDMTAKEKFSPLTSNLINLLAENGRLTNTPAVISAFSTMMSVHRGEVPCTV 120


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.132    0.355 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,692,052
Number of Sequences: 62578
Number of extensions: 267154
Number of successful extensions: 665
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 657
Number of HSP's gapped (non-prelim): 4
length of query: 317
length of database: 14,973,337
effective HSP length: 99
effective length of query: 218
effective length of database: 8,778,115
effective search space: 1913629070
effective search space used: 1913629070
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)