Query psy4192
Match_columns 317
No_of_seqs 225 out of 2127
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 19:11:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4192.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4192hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1662|consensus 100.0 8.8E-38 1.9E-42 266.3 16.1 174 11-185 11-206 (210)
2 PRK13436 F0F1 ATP synthase sub 100.0 5.2E-36 1.1E-40 261.0 16.8 156 28-187 5-179 (179)
3 COG0712 AtpH F0F1-type ATP syn 100.0 3.7E-35 8E-40 254.5 16.8 157 25-185 2-177 (178)
4 PRK13434 F0F1 ATP synthase sub 100.0 4.7E-35 1E-39 256.1 16.9 154 28-188 4-176 (184)
5 PRK13441 F0F1 ATP synthase sub 100.0 3.9E-33 8.4E-38 243.2 16.3 158 28-188 4-179 (180)
6 PRK13430 F0F1 ATP synthase sub 100.0 3.4E-31 7.3E-36 244.4 19.2 175 8-186 77-270 (271)
7 TIGR01145 ATP_synt_delta ATP s 100.0 3E-31 6.4E-36 229.8 16.1 152 30-185 1-172 (172)
8 CHL00119 atpD ATP synthase CF1 100.0 3.8E-31 8.2E-36 231.5 16.7 158 27-187 5-181 (184)
9 PRK08474 F0F1 ATP synthase sub 100.0 7.2E-31 1.6E-35 228.1 17.3 149 29-187 4-170 (176)
10 PRK13429 F0F1 ATP synthase sub 100.0 2.2E-30 4.7E-35 226.1 17.5 155 29-186 5-178 (181)
11 PF00213 OSCP: ATP synthase de 100.0 4.9E-34 1.1E-38 246.9 -5.7 152 30-185 1-172 (172)
12 PRK13428 F0F1 ATP synthase sub 100.0 3.2E-30 7E-35 253.0 19.4 161 23-186 264-444 (445)
13 PRK05758 F0F1 ATP synthase sub 100.0 2.9E-29 6.2E-34 218.2 16.9 153 28-186 5-176 (177)
14 KOG1662|consensus 99.9 7.3E-27 1.6E-31 199.5 12.9 136 179-314 16-152 (210)
15 PRK13436 F0F1 ATP synthase sub 99.9 3.6E-25 7.8E-30 192.8 12.1 123 192-315 4-126 (179)
16 COG0712 AtpH F0F1-type ATP syn 99.9 2.3E-24 4.9E-29 187.0 12.7 124 190-314 2-125 (178)
17 PRK13434 F0F1 ATP synthase sub 99.9 9.3E-24 2E-28 184.8 12.7 120 192-315 3-122 (184)
18 CHL00119 atpD ATP synthase CF1 99.9 9.1E-24 2E-28 184.8 12.5 124 190-314 3-126 (184)
19 PRK08474 F0F1 ATP synthase sub 99.9 1.1E-23 2.5E-28 182.9 12.5 118 193-314 3-120 (176)
20 TIGR01145 ATP_synt_delta ATP s 99.9 2.6E-23 5.6E-28 180.1 13.0 119 195-314 1-119 (172)
21 PRK13431 F0F1 ATP synthase sub 99.9 2.3E-22 4.9E-27 174.1 15.8 150 28-187 5-174 (180)
22 PRK13429 F0F1 ATP synthase sub 99.9 1.4E-22 2.9E-27 176.9 13.4 122 193-314 4-125 (181)
23 PRK13441 F0F1 ATP synthase sub 99.9 3.9E-22 8.5E-27 173.9 12.8 121 192-315 3-125 (180)
24 PRK05758 F0F1 ATP synthase sub 99.9 2.1E-21 4.5E-26 168.8 13.0 120 192-314 4-123 (177)
25 PRK13431 F0F1 ATP synthase sub 99.9 2E-21 4.3E-26 168.2 10.5 118 192-315 4-125 (180)
26 PRK13430 F0F1 ATP synthase sub 99.9 5.4E-21 1.2E-25 176.6 13.0 137 178-315 82-218 (271)
27 PF00213 OSCP: ATP synthase de 99.8 3.9E-23 8.5E-28 178.7 -2.3 121 195-316 1-121 (172)
28 PRK13428 F0F1 ATP synthase sub 99.8 5.4E-20 1.2E-24 180.8 13.1 164 152-315 224-392 (445)
29 TIGR03321 alt_F1F0_F0_B altern 99.6 3.4E-14 7.3E-19 129.8 14.1 105 75-185 140-245 (246)
30 PRK14474 F0F1 ATP synthase sub 98.6 6E-07 1.3E-11 82.3 11.9 73 111-186 173-246 (250)
31 PRK06669 fliH flagellar assemb 96.8 0.0026 5.7E-08 59.3 6.2 100 79-186 175-275 (281)
32 TIGR03825 FliH_bacil flagellar 90.9 5.2 0.00011 36.7 12.4 84 96-186 161-245 (255)
33 PRK03963 V-type ATP synthase s 90.2 10 0.00022 33.1 13.3 63 119-185 124-188 (198)
34 PF02108 FliH: Flagellar assem 89.9 4.7 0.0001 32.2 10.1 59 110-175 64-123 (128)
35 PRK02292 V-type ATP synthase s 87.9 7.5 0.00016 33.7 10.7 32 152-184 143-176 (188)
36 PRK06937 type III secretion sy 87.2 18 0.0004 31.8 12.8 72 110-186 127-200 (204)
37 PRK06328 type III secretion sy 85.6 13 0.00028 33.5 11.1 58 124-184 138-199 (223)
38 PRK05687 fliH flagellar assemb 84.5 21 0.00045 32.4 12.2 59 124-186 182-241 (246)
39 PRK15322 invasion protein OrgB 75.2 60 0.0013 28.8 12.0 119 76-207 77-200 (210)
40 PRK09098 type III secretion sy 72.3 76 0.0017 28.7 12.3 61 125-186 158-220 (233)
41 TIGR02499 HrpE_YscL_not type I 64.2 84 0.0018 26.2 13.8 62 104-172 104-166 (166)
42 COG1317 FliH Flagellar biosynt 60.3 1.3E+02 0.0029 27.2 12.0 59 124-185 164-224 (234)
43 PRK01558 V-type ATP synthase s 59.2 16 0.00034 32.2 4.5 40 133-176 138-179 (198)
44 PF01991 vATP-synt_E: ATP synt 55.8 25 0.00054 30.3 5.2 77 95-175 94-180 (198)
45 TIGR01160 SUI1_MOF2 translatio 49.8 50 0.0011 26.4 5.5 53 110-169 35-87 (110)
46 PRK09019 translation initiatio 49.3 35 0.00076 27.2 4.5 33 115-147 46-78 (108)
47 TIGR03321 alt_F1F0_F0_B altern 47.1 42 0.00092 30.5 5.4 38 277-315 157-194 (246)
48 COG0023 SUI1 Translation initi 47.1 33 0.00071 27.2 4.0 36 111-146 37-72 (104)
49 PRK13386 fliH flagellar assemb 44.5 2.4E+02 0.0052 25.5 11.9 50 124-179 169-219 (236)
50 PRK06824 translation initiatio 41.6 62 0.0013 26.3 4.9 36 111-146 52-87 (118)
51 PRK07738 flagellar protein Fla 41.2 48 0.001 26.8 4.2 55 122-178 41-95 (117)
52 PF12327 FtsZ_C: FtsZ family, 40.7 1.2E+02 0.0025 23.3 6.3 53 112-164 37-89 (95)
53 PF02520 DUF148: Domain of unk 34.9 2.2E+02 0.0047 22.3 7.2 44 215-263 55-98 (113)
54 cd00474 SUI1_eIF1 The SUI1/eIF 34.4 1E+02 0.0022 22.8 4.8 36 112-147 11-46 (77)
55 PF14480 DNA_pol3_a_NI: DNA po 32.5 1.1E+02 0.0025 21.9 4.8 43 108-150 32-74 (76)
56 PRK07451 translation initiatio 31.0 94 0.002 25.1 4.4 34 113-146 51-84 (115)
57 PF07862 Nif11: Nitrogen fixat 29.9 1.7E+02 0.0036 19.3 4.9 36 218-254 4-39 (49)
58 PRK06032 fliH flagellar assemb 29.8 3.8E+02 0.0082 23.4 13.4 88 79-175 96-187 (199)
59 PRK01005 V-type ATP synthase s 29.6 4E+02 0.0087 23.6 11.9 46 124-175 139-187 (207)
60 PF07560 DUF1539: Domain of Un 28.9 62 0.0013 26.6 3.0 25 232-256 71-95 (126)
61 PF08863 YolD: YolD-like prote 28.8 1.2E+02 0.0026 22.5 4.6 41 121-166 20-60 (92)
62 PRK01194 V-type ATP synthase s 27.7 29 0.00062 30.3 1.0 23 153-175 142-166 (185)
63 TIGR01158 SUI1_rel translation 27.6 1.3E+02 0.0027 23.6 4.5 36 111-146 35-70 (101)
64 PF03646 FlaG: FlaG protein; 27.6 68 0.0015 25.0 3.0 55 122-178 32-86 (107)
65 PF05823 Gp-FAR-1: Nematode fa 27.1 62 0.0014 27.3 2.9 76 61-139 61-136 (154)
66 PF04918 DltD_M: DltD central 26.7 97 0.0021 26.3 4.1 64 229-293 51-114 (163)
67 PF07315 DUF1462: Protein of u 26.6 99 0.0021 23.9 3.6 28 123-151 16-43 (93)
68 PRK00939 translation initiatio 24.3 1.6E+02 0.0034 23.0 4.5 37 110-146 33-69 (99)
69 PF02520 DUF148: Domain of unk 24.3 2.9E+02 0.0062 21.6 6.2 42 231-272 5-46 (113)
70 cd02685 MIT_C MIT_C; domain fo 22.6 4.6E+02 0.0099 22.1 7.2 73 111-186 50-134 (148)
71 COG4837 Uncharacterized protei 21.3 1.1E+02 0.0024 23.8 3.0 29 122-151 22-50 (106)
72 TIGR01609 PF_unchar_267 Plasmo 21.0 3.1E+02 0.0067 23.1 5.7 40 232-273 103-142 (146)
No 1
>KOG1662|consensus
Probab=100.00 E-value=8.8e-38 Score=266.30 Aligned_cols=174 Identities=36% Similarity=0.543 Sum_probs=161.2
Q ss_pred hhhhh---hhhcccCCCchhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------------------HHHHHHHH
Q psy4192 11 FSTSQ---VSQQLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISFQK-------------------SLKIEALK 68 (317)
Q Consensus 11 ~~~~~---~~~~~~~~~~~~~~va~~YA~AL~~~a~e~~~~~~v~~~l~~l~~-------------------~~K~~ll~ 68 (317)
|++|. ++++..+||+|.+|+.++||.|||+.|...+++|.+..||..+.+ +.|...++
T Consensus 11 ~~~s~~~aaaq~tv~pPVql~G~eG~YAtaLY~AA~K~~~ld~vetdL~kl~~v~k~~pk~~~f~~nP~l~~~~k~~~i~ 90 (210)
T KOG1662|consen 11 LSSSLARAAAQLTVKPPVQLYGLEGRYATALYSAAVKNSKLDQVETDLNKLEQVLKTDPKFAQFVLNPTLTREKKKTAID 90 (210)
T ss_pred cchHHHHHHHhCCCCCCeEEecccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChHHHHHhcCCccchHHHHHHHH
Confidence 55554 334558999999999999999999999999999999999999987 88999999
Q ss_pred HHhccCCCCHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHcCCCceEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEE
Q psy4192 69 IVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILL 148 (317)
Q Consensus 69 ~~~~~~~~~~~~~nfL~vl~e~~r~~~l~~I~~~f~~~~~~~~~~~~v~V~sA~~Ls~~q~~~I~~~l~~~~~~~~~i~l 148 (317)
++.++.++.+++.|||.+|+||||++.+.+|+.+|..++++++|.+.|+|+||.||+..+.++|++.|++.+++|+++.+
T Consensus 91 di~~~~~~~~~t~NflnlLaeNgRL~~l~~Ivk~F~~lm~ahrGev~~~VtSa~pLd~~~~k~l~~~l~k~l~~gk~l~v 170 (210)
T KOG1662|consen 91 DIVEKLKLAPLTKNFLNLLAENGRLNNLTEIVKAFETLMNAHRGEVKVEVTSAEPLDAKQLKQLEKALQKILGGGKKLKV 170 (210)
T ss_pred HHHHHhcccHhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHhCCceEEEEEecccCChHHHHHHHHHHHHHhcCCceEEE
Confidence 99998789999999999999999999999999999999999999999999999999999999999999999888999999
Q ss_pred EEEecCCCcCCcEeccCCcchhhhhhccchhhhhhhh
Q psy4192 149 TTKVDPSIIGDPKSNALTTAPLKLARSFSTSQISQQL 185 (317)
Q Consensus 149 ~~~vDpsLIGG~~I~vg~~viD~svr~~~~~~~~~~~ 185 (317)
+++|||||+||++|++||+.+|.||++ ...++.+.|
T Consensus 171 ~~~vdPSI~GGliVeiGdK~vDmSI~t-r~q~l~~ll 206 (210)
T KOG1662|consen 171 ENKVDPSIIGGLIVEIGDKYVDMSIKT-RLQKLNKLL 206 (210)
T ss_pred EeecChhhhcceEEEEcCeeEeeeHHH-HHHHHHHHh
Confidence 999999999999999999999999999 665555544
No 2
>PRK13436 F0F1 ATP synthase subunit delta; Provisional
Probab=100.00 E-value=5.2e-36 Score=260.96 Aligned_cols=156 Identities=20% Similarity=0.248 Sum_probs=149.9
Q ss_pred hhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------------------HHHHHHHHHHhccCCCCHHHHHHHHHHH
Q psy4192 28 FGTDGRYATALYSAATKLKQLDGVEKELISFQK-------------------SLKIEALKIVGQKKNFSAASINLLALLA 88 (317)
Q Consensus 28 ~~va~~YA~AL~~~a~e~~~~~~v~~~l~~l~~-------------------~~K~~ll~~~~~~~~~~~~~~nfL~vl~ 88 (317)
..|+++||+|||++|.+.+.++.|+++|..+.+ ++|.+++..+|+ +++++.+.|||++|+
T Consensus 5 ~~va~~YA~AL~~~a~e~~~l~~v~~~l~~~~~~~~~~~~l~~~l~~P~i~~~~K~~~l~~l~~-~~~~~~~~nfl~ll~ 83 (179)
T PRK13436 5 NKNIYNYAEALFDIANEENNVEKYINEVFKIIEILKNNKDLIKLLTSYFIDKEEKFKIIDKIFS-AKIDIYLVNFLKILA 83 (179)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcChHHHHHHcCCCCCHHHHHHHHHHHHh-ccCCHHHHHHHHHHH
Confidence 378999999999999999999999999999987 889999999997 479999999999999
Q ss_pred HcCCcccHHHHHHHHHHHHHHHcCCCceEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEEEEecCCCcCCcEeccCCcc
Q psy4192 89 ENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGDPKSNALTTA 168 (317)
Q Consensus 89 e~~r~~~l~~I~~~f~~~~~~~~~~~~v~V~sA~~Ls~~q~~~I~~~l~~~~~~~~~i~l~~~vDpsLIGG~~I~vg~~v 168 (317)
+|+|+.+|++|+++|.++++++.|+..|+|+||.|||++|+++|.+.+++++ |+++.++++||||||||++|++||++
T Consensus 84 ~~~R~~~l~~I~~~f~~~~~~~~~~~~~~V~sA~~Ls~~~~~~i~~~l~~~~--g~~v~l~~~vDpslIGGi~i~~gd~v 161 (179)
T PRK13436 84 KNNLFIYIKQILKKFVKLSNEKLNITYGEIYTTEPLSEVQISRFESKLSKKL--NKKVHLVNKIDPKLIAGIKIKVDNKV 161 (179)
T ss_pred HCChHHHHHHHHHHHHHHHHHHcCeEEEEEEecCCCCHHHHHHHHHHHHHHH--CCeEEEEeecCHHHcCceEEEECCEE
Confidence 9999999999999999999999999999999999999999999999999999 78999999999999999999999999
Q ss_pred hhhhhhccchhhhhhhhhc
Q psy4192 169 PLKLARSFSTSQISQQLVK 187 (317)
Q Consensus 169 iD~svr~~~~~~~~~~~~~ 187 (317)
||+|+|+ .+.+++++|.+
T Consensus 162 iD~Sik~-~L~~l~~~l~~ 179 (179)
T PRK13436 162 FENSIKS-KLKELKKQVLK 179 (179)
T ss_pred eehhHHH-HHHHHHHHHhC
Confidence 9999999 99999888754
No 3
>COG0712 AtpH F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) [Energy production and conversion]
Probab=100.00 E-value=3.7e-35 Score=254.45 Aligned_cols=157 Identities=27% Similarity=0.330 Sum_probs=148.7
Q ss_pred chhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------------------HHHHHHHHHHhccCCCCHHHHHHHH
Q psy4192 25 VQVFGTDGRYATALYSAATKLKQLDGVEKELISFQK-------------------SLKIEALKIVGQKKNFSAASINLLA 85 (317)
Q Consensus 25 ~~~~~va~~YA~AL~~~a~e~~~~~~v~~~l~~l~~-------------------~~K~~ll~~~~~~~~~~~~~~nfL~ 85 (317)
....+++++||+|||++|.|++.++.|+++|..+.+ ++|.+++.++|++ ..++++.|||.
T Consensus 2 ~~~~~va~~YA~ALf~~A~e~~~~~~~~~~L~~~~~i~~~~~~l~~ll~sp~~~~~~k~~li~~i~~~-~~~~~~~nfL~ 80 (178)
T COG0712 2 SELSTVARRYAKALFELAEEKGQLEEVEEELTFLAEILKNSPKLKQLLSSPAVSAEDKKELLISIFKK-IGDPLLQNFLR 80 (178)
T ss_pred chhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCHhHHHHhcCcCCCHHHHHHHHHHHHhc-cCcHHHHHHHH
Confidence 456789999999999999999999999999999887 8999999999983 44599999999
Q ss_pred HHHHcCCcccHHHHHHHHHHHHHHHcCCCceEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEEEEecCCCcCCcEeccC
Q psy4192 86 LLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGDPKSNAL 165 (317)
Q Consensus 86 vl~e~~r~~~l~~I~~~f~~~~~~~~~~~~v~V~sA~~Ls~~q~~~I~~~l~~~~~~~~~i~l~~~vDpsLIGG~~I~vg 165 (317)
+|++|+|+.++|+|+..|..+.++++|+..|+|+||.|||++|+++|.+.|++++ |+++.+.++||||||||++|++|
T Consensus 81 ll~en~Rl~~l~~I~~~~~~l~~~~~~~~~a~V~SA~~Ls~~q~~~l~~~l~k~~--~~~v~i~~~VD~sliGG~iI~vg 158 (178)
T COG0712 81 LLAENKRLNLLPEILEEFLKLAAESRGIVEAEVTSAFELSDEQLTKLEAKLEKKF--GKKVKLNNKIDPSLIGGLIIKVG 158 (178)
T ss_pred HHHHccchhhHHHHHHHHHHHHHHhcCceEEEEEEcCCCCHHHHHHHHHHHHHHh--CCCceEEeeeCHHHhCceEEEEC
Confidence 9999999999999999999999999999999999999999999999999999999 89999999999999999999999
Q ss_pred Ccchhhhhhccchhhhhhhh
Q psy4192 166 TTAPLKLARSFSTSQISQQL 185 (317)
Q Consensus 166 ~~viD~svr~~~~~~~~~~~ 185 (317)
|.+||+|+|+ .+.++...+
T Consensus 159 d~viD~Svr~-~L~~l~~~l 177 (178)
T COG0712 159 DEVIDGSVRG-KLKRLAKAL 177 (178)
T ss_pred CEEEechHHH-HHHHHHHhc
Confidence 9999999999 888877654
No 4
>PRK13434 F0F1 ATP synthase subunit delta; Provisional
Probab=100.00 E-value=4.7e-35 Score=256.09 Aligned_cols=154 Identities=19% Similarity=0.266 Sum_probs=147.1
Q ss_pred hhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------------------HHHHHHHHHHhccCCCCHHHHHHHHHHH
Q psy4192 28 FGTDGRYATALYSAATKLKQLDGVEKELISFQK-------------------SLKIEALKIVGQKKNFSAASINLLALLA 88 (317)
Q Consensus 28 ~~va~~YA~AL~~~a~e~~~~~~v~~~l~~l~~-------------------~~K~~ll~~~~~~~~~~~~~~nfL~vl~ 88 (317)
.+|++|||+|||+ +.+.+++|.++|..+.+ ++|.+++.++++ +++++.+.|||++|+
T Consensus 4 ~~va~rYA~AL~~---~~~~l~~v~~~l~~l~~~~~~~~~l~~~l~~P~i~~~~K~~~l~~~~~-~~~~~~~~nfl~lL~ 79 (184)
T PRK13434 4 SGVSKVYASALLG---AANSPEEVEQELGDLVQLLFKDEKIRNFFLSPTVSPEEKEQTLAKNLR-GKISDITLNFLGVLL 79 (184)
T ss_pred hhhHHHHHHHHHH---hcCCHHHHHHHHHHHHHHHHcCHHHHHHHhCCCCCHHHHHHHHHHHHH-ccCCHHHHHHHHHHH
Confidence 4799999999999 56899999999988887 789999999996 579999999999999
Q ss_pred HcCCcccHHHHHHHHHHHHHHHcCCCceEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEEEEecCCCcCCcEeccCCcc
Q psy4192 89 ENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGDPKSNALTTA 168 (317)
Q Consensus 89 e~~r~~~l~~I~~~f~~~~~~~~~~~~v~V~sA~~Ls~~q~~~I~~~l~~~~~~~~~i~l~~~vDpsLIGG~~I~vg~~v 168 (317)
+|+|+.++++|+..|.+++++++|+..|+|+||.|||++|+++|.+.|++++ |+++.++++||||||||++|++||++
T Consensus 80 e~~R~~~l~~I~~~f~~l~~~~~~~~~~~V~sA~~Ls~~q~~~l~~~L~k~~--g~~v~l~~~vDpsLIGG~ii~igd~v 157 (184)
T PRK13434 80 NKGRFIYLPEIQKDFTVELDKKKGRVRAQIVSYPSLEPAQVDKLGSILSEKF--KSEFILEVSEDKNLLGGFVVQFNDLK 157 (184)
T ss_pred HCCcHHHHHHHHHHHHHHHHHHcCeEEEEEEEcCCCCHHHHHHHHHHHHHHH--CCEeEEEeeeChHHcCceEEEECCEE
Confidence 9999999999999999999999999999999999999999999999999999 89999999999999999999999999
Q ss_pred hhhhhhccchhhhhhhhhcc
Q psy4192 169 PLKLARSFSTSQISQQLVKA 188 (317)
Q Consensus 169 iD~svr~~~~~~~~~~~~~~ 188 (317)
||+|+|+ ++.+++++|.+.
T Consensus 158 iD~Svk~-~L~~l~~~l~~~ 176 (184)
T PRK13434 158 IEKSIAS-QLGEIKKAMLEK 176 (184)
T ss_pred EeHhHHH-HHHHHHHHHHhc
Confidence 9999999 999999999766
No 5
>PRK13441 F0F1 ATP synthase subunit delta; Provisional
Probab=100.00 E-value=3.9e-33 Score=243.23 Aligned_cols=158 Identities=17% Similarity=0.196 Sum_probs=149.6
Q ss_pred hhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----------------HHHHHHHHHHhc--cCCCCHHHHHHHHHHHH
Q psy4192 28 FGTDGRYATALYSAATKLKQLDGVEKELISFQK----------------SLKIEALKIVGQ--KKNFSAASINLLALLAE 89 (317)
Q Consensus 28 ~~va~~YA~AL~~~a~e~~~~~~v~~~l~~l~~----------------~~K~~ll~~~~~--~~~~~~~~~nfL~vl~e 89 (317)
..++++||+|||++|.+.+.+++|.++|..+.+ ++|.++++.+++ ++.+++.+.|||++|++
T Consensus 4 ~~va~~YA~AL~~~a~e~~~l~~v~~~l~~~~~~~~~~~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~~~nfl~vL~~ 83 (180)
T PRK13441 4 SAIASKYARALLNVAIELEKEEEYGEFLDLVCQIYESAKEFFDNPIVKPEKKVSLIKEIMKEFGQEMDEFFENFLNLVFE 83 (180)
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHH
Confidence 368999999999999999999999999988777 889999999974 24699999999999999
Q ss_pred cCCcccHHHHHHHHHHHHHHHcCCCceEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEEEEecCCCcCCcEeccCCcch
Q psy4192 90 NGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGDPKSNALTTAP 169 (317)
Q Consensus 90 ~~r~~~l~~I~~~f~~~~~~~~~~~~v~V~sA~~Ls~~q~~~I~~~l~~~~~~~~~i~l~~~vDpsLIGG~~I~vg~~vi 169 (317)
|+|+.++++|+..|..++++++|+..|+|+||.||+++++++|.+.+++++ |+++.+.++|||+||||+++++||++|
T Consensus 84 ~~R~~~l~~I~~~f~~l~~~~~~~~~~~V~sA~~L~~~~~~~i~~~l~k~~--~~~v~l~~~vD~sliGG~~i~ig~~~~ 161 (180)
T PRK13441 84 NKRQKLLPQIRALFEYEKILSEQKVPVNLTTAHELSDEELKLLRKFVRKYV--LRDPVFEETIDESLIAGAVVEFEGKRL 161 (180)
T ss_pred CChHHHHHHHHHHHHHHHHHhcCeeEEEEEecccCCHHHHHHHHHHHHHHH--CCcceEEeeeChHHhCcEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999999998 899999999999999999999999999
Q ss_pred hhhhhccchhhhhhhhhcc
Q psy4192 170 LKLARSFSTSQISQQLVKA 188 (317)
Q Consensus 170 D~svr~~~~~~~~~~~~~~ 188 (317)
|+|+|+ .+.+++++|.|+
T Consensus 162 D~Sik~-~L~~l~~~l~~~ 179 (180)
T PRK13441 162 DVTVQG-RLKKIAREVLKR 179 (180)
T ss_pred eHhHHH-HHHHHHHHHhhC
Confidence 999999 999999998775
No 6
>PRK13430 F0F1 ATP synthase subunit delta; Provisional
Probab=99.98 E-value=3.4e-31 Score=244.42 Aligned_cols=175 Identities=21% Similarity=0.240 Sum_probs=162.4
Q ss_pred hhhhhhhhhhhcccCCCchhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------------------HHHHHHHH
Q psy4192 8 ARSFSTSQVSQQLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISFQK-------------------SLKIEALK 68 (317)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~va~~YA~AL~~~a~e~~~~~~v~~~l~~l~~-------------------~~K~~ll~ 68 (317)
|..+...++++--..|+-...++..-+..|||++|.+.|++++|+++|..+.. ++|.+++.
T Consensus 77 ~~~~~~~~v~~rWs~~~dl~~~~e~l~~~ALf~~A~e~g~ld~v~~eL~~~~~~l~~~~~l~~~L~~p~i~~e~K~~ll~ 156 (271)
T PRK13430 77 TLEVVSDAVRQRWSRPRDLADALEELGVRALLASAEAQGALDDVEDELFRLGRILASNPELRLALSDRAAPAEAKRELLA 156 (271)
T ss_pred HHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCHHHHHHHhCCCCCHHHHHHHHH
Confidence 44455555555556788899999999999999999999999999999999877 88999999
Q ss_pred HHhccCCCCHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHcCCCceEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEE
Q psy4192 69 IVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILL 148 (317)
Q Consensus 69 ~~~~~~~~~~~~~nfL~vl~e~~r~~~l~~I~~~f~~~~~~~~~~~~v~V~sA~~Ls~~q~~~I~~~l~~~~~~~~~i~l 148 (317)
.+|+ +.+++.+.||+.+|++++|+.++++|+..|.+++++++|+..|+|+||.||+++|+++|.+.|+++| |++|.+
T Consensus 157 ~l~~-~~~~~~~~nfl~~lv~~~R~~~l~~i~~~f~~l~~~~~~~~~a~VtSA~pLs~~q~~~L~~~L~k~~--g~~V~l 233 (271)
T PRK13430 157 RLLY-GKVTPVTERLAEQAVGRPRGRSIEEGLDELSNLAAARRGRSVATVTTAVPLSDEQKQRLAAALSRIY--GRPVHL 233 (271)
T ss_pred HHHh-ccCCHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHcCeeEEEEEecCCCCHHHHHHHHHHHHHHH--CCceEE
Confidence 9997 5799999999999999999999999999999999999999999999999999999999999999999 899999
Q ss_pred EEEecCCCcCCcEeccCCcchhhhhhccchhhhhhhhh
Q psy4192 149 TTKVDPSIIGDPKSNALTTAPLKLARSFSTSQISQQLV 186 (317)
Q Consensus 149 ~~~vDpsLIGG~~I~vg~~viD~svr~~~~~~~~~~~~ 186 (317)
+++|||+||||++|++||++||+||++ .+.+++++|.
T Consensus 234 ~~~VDpsLIGGivI~vGd~viD~Sv~~-rL~~L~~~L~ 270 (271)
T PRK13430 234 NSEVDPSVLGGMRVQVGDEVIDGSVAG-RLERLRRRLA 270 (271)
T ss_pred EeeECccccCcEEEEECCEEEehhHHH-HHHHHHHHhc
Confidence 999999999999999999999999999 9999988763
No 7
>TIGR01145 ATP_synt_delta ATP synthase, F1 delta subunit. This model describes the ATP synthase delta subunit in bacteria, mitochondria, and chloroplasts. It is sometimes called OSCP for Oligomycin Sensitivity Conferring Protein. F1/F0-ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Delta subunit belongs to the F1 cluster or sector and functionally implicated in the overall stability of the complex. Expression of truncated forms of this subunit results in low ATPase activity.
Probab=99.97 E-value=3e-31 Score=229.75 Aligned_cols=152 Identities=28% Similarity=0.374 Sum_probs=145.0
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------------------HHHHHHHHHHhccCCCCHHHHHHHHHHHHc
Q psy4192 30 TDGRYATALYSAATKLKQLDGVEKELISFQK-------------------SLKIEALKIVGQKKNFSAASINLLALLAEN 90 (317)
Q Consensus 30 va~~YA~AL~~~a~e~~~~~~v~~~l~~l~~-------------------~~K~~ll~~~~~~~~~~~~~~nfL~vl~e~ 90 (317)
++++||+|||++|.+.++++.|+++|..+.+ ++|.++++++|+ +++++.+.|||++|+++
T Consensus 1 va~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~l~~-~~~~~~~~nfl~~l~~~ 79 (172)
T TIGR01145 1 VARPYAKALFEIANEKSSLEEWGEMLNFVKEVLKNNKELKKFLSNPLISAEKKKEFIKNVFG-EQLDESSLNLLLLLAEN 79 (172)
T ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhCCHHHHHHHhCCCCCHHHHHHHHHHHHh-ccCCHHHHHHHHHHHHC
Confidence 5799999999999999999999999999988 889999999997 57999999999999999
Q ss_pred CCcccHHHHHHHHHHHHHHHcCCCceEEEeecCCCHHHHHHHHHHHHHHhcCCC-eEEEEEEecCCCcCCcEeccCCcch
Q psy4192 91 GKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGE-NILLTTKVDPSIIGDPKSNALTTAP 169 (317)
Q Consensus 91 ~r~~~l~~I~~~f~~~~~~~~~~~~v~V~sA~~Ls~~q~~~I~~~l~~~~~~~~-~i~l~~~vDpsLIGG~~I~vg~~vi 169 (317)
+|+.++++|+.+|.+++++..|+..++|+||.||+++++++|.+.+++++ |+ ++.+.+++||+||||+++++|+++|
T Consensus 80 ~r~~~l~~I~~~~~~~~~~~~~~~~~~v~sa~~L~~~~~~~l~~~l~~~~--~~~~v~~~~~vd~~ligGi~i~~~~~~i 157 (172)
T TIGR01145 80 GRLAALPDILDQFLKLSYEAQQTADVEVISAKPLTEDQQAKIAEKLEKIT--GAAKVKLNCKVDKDLIGGVIIRIGDRVI 157 (172)
T ss_pred CcHHHHHHHHHHHHHHHHHhcCEEEEEEEEccCCCHHHHHHHHHHHHHHh--CCCeEEEEEeECHHHhCceEEEECCEEE
Confidence 99999999999999999999999999999999999999999999999999 56 9999999999999999999999999
Q ss_pred hhhhhccchhhhhhhh
Q psy4192 170 LKLARSFSTSQISQQL 185 (317)
Q Consensus 170 D~svr~~~~~~~~~~~ 185 (317)
|+|+++ .+++|+.+|
T Consensus 158 D~Si~~-~L~~l~~~l 172 (172)
T TIGR01145 158 DGSVRG-QLKRLSRQL 172 (172)
T ss_pred ehhHHH-HHHHHHhhC
Confidence 999998 888887654
No 8
>CHL00119 atpD ATP synthase CF1 delta subunit; Validated
Probab=99.97 E-value=3.8e-31 Score=231.47 Aligned_cols=158 Identities=22% Similarity=0.270 Sum_probs=149.4
Q ss_pred hhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------------------HHHHHHHHHHhccCCCCHHHHHHHHHH
Q psy4192 27 VFGTDGRYATALYSAATKLKQLDGVEKELISFQK-------------------SLKIEALKIVGQKKNFSAASINLLALL 87 (317)
Q Consensus 27 ~~~va~~YA~AL~~~a~e~~~~~~v~~~l~~l~~-------------------~~K~~ll~~~~~~~~~~~~~~nfL~vl 87 (317)
...++++||+|||++|.+.+.++.|+++|..+.+ ++|.+++.++|+ +++++.+.|||++|
T Consensus 5 ~~~va~~YA~AL~~~a~e~~~l~~v~~~l~~l~~~~~~~~~l~~~l~~p~i~~~~K~~ii~~~~~-~~~~~~~~nfl~~L 83 (184)
T CHL00119 5 VSKIAQPYAEALLEFAKEKNIMEQITADIQLILTFLNESPELKKFLANPLISKNAKKEVIKKTFG-SQINENTLKFLMVL 83 (184)
T ss_pred HhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCHHHHHHHhCCCCCHHHHHHHHHHHHH-hccCHHHHHHHHHH
Confidence 4579999999999999999999999999998887 889999999997 47999999999999
Q ss_pred HHcCCcccHHHHHHHHHHHHHHHcCCCceEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEEEEecCCCcCCcEeccCCc
Q psy4192 88 AENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGDPKSNALTT 167 (317)
Q Consensus 88 ~e~~r~~~l~~I~~~f~~~~~~~~~~~~v~V~sA~~Ls~~q~~~I~~~l~~~~~~~~~i~l~~~vDpsLIGG~~I~vg~~ 167 (317)
++|+|+.++++|+..|.+++++.+|+..++|+||.||+++++++|.+.|.+++| ++++.+.+++||+|+||+++++|+.
T Consensus 84 ~~~~r~~~l~~I~~~f~~~~~~~~~~~~~~v~sa~~L~~~~~~~l~~~L~~~~~-~~~v~l~~~vD~~ligGi~i~~g~~ 162 (184)
T CHL00119 84 VDRGRIALLDAIIEKYLELVYKLASIKIAEVSTAVPLSSAQEEALIEKLKEMTN-AKEIKLVITVDPSLIGGFLIKIGSK 162 (184)
T ss_pred HHcCcHHHHHHHHHHHHHHHHHhcCeEEEEEEeccCCCHHHHHHHHHHHHHHhC-CCeEEEEeeeChHHhCcEEEEECCE
Confidence 999999999999999999999999999999999999999999999999999982 4799999999999999999999999
Q ss_pred chhhhhhccchhhhhhhhhc
Q psy4192 168 APLKLARSFSTSQISQQLVK 187 (317)
Q Consensus 168 viD~svr~~~~~~~~~~~~~ 187 (317)
+||+|+++ .++++++.|.+
T Consensus 163 ~~D~Si~~-~L~~l~~~l~~ 181 (184)
T CHL00119 163 VIDTSIKG-QLKQLASHLDT 181 (184)
T ss_pred EEeHhHHH-HHHHHHHHHHH
Confidence 99999998 88888888764
No 9
>PRK08474 F0F1 ATP synthase subunit delta; Validated
Probab=99.97 E-value=7.2e-31 Score=228.07 Aligned_cols=149 Identities=24% Similarity=0.242 Sum_probs=140.2
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH------------------HHHHHHHHHHhccCCCCHHHHHHHHHHHHc
Q psy4192 29 GTDGRYATALYSAATKLKQLDGVEKELISFQK------------------SLKIEALKIVGQKKNFSAASINLLALLAEN 90 (317)
Q Consensus 29 ~va~~YA~AL~~~a~e~~~~~~v~~~l~~l~~------------------~~K~~ll~~~~~~~~~~~~~~nfL~vl~e~ 90 (317)
.++++||+|||++|. .+.++.|.++|..+.. ++|.+++..+++ +.++.+.|||++|++|
T Consensus 4 ~va~~YA~ALf~~a~-~~~l~~v~~~l~~l~~~~~~~~l~~~l~~P~i~~~~K~~vi~~~~~--~~~~~~~nFL~vLi~n 80 (176)
T PRK08474 4 LIAKRYAKALLSSLS-SDELNDIYSNLKILSSAFADEKFKEIISSPEISKEQKIEFLLSFVD--NANAKFQNFIKLLAEN 80 (176)
T ss_pred hhHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHCChhHHHHHhCCCCCHHHHHHHHHHHHh--ccCHHHHHHHHHHHHC
Confidence 689999999999985 6899999999998776 889999999997 4689999999999999
Q ss_pred CCcccHHHHHHHHHHHHHHHcCCCceEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEEEEecCCCcCCcEeccCCcchh
Q psy4192 91 GKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGDPKSNALTTAPL 170 (317)
Q Consensus 91 ~r~~~l~~I~~~f~~~~~~~~~~~~v~V~sA~~Ls~~q~~~I~~~l~~~~~~~~~i~l~~~vDpsLIGG~~I~vg~~viD 170 (317)
||+.+|++|+..|..++++++|+..|+|+||.|||++|+++|.+.+++++ |+++.+++.+|| |||++|++||++||
T Consensus 81 ~R~~~L~~I~~~f~~~~~~~~~~~~~~V~SA~~Ls~~q~~~i~~~l~~~~--g~~v~l~~~vD~--IGG~ii~igd~v~D 156 (176)
T PRK08474 81 KRLELIPAIAKELERQIALKENEYVGVVYSNEKLSEETLKKLEEKLSKKF--NAKIKLKQKKSD--YDGIKVEVDDLGVE 156 (176)
T ss_pred ChHHHHHHHHHHHHHHHHHHcCeEEEEEEECccCCHHHHHHHHHHHHHHh--CCeEEEEEEEcC--CCCEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999999999 899999999999 99999999999999
Q ss_pred hhhhccchhhhhhhhhc
Q psy4192 171 KLARSFSTSQISQQLVK 187 (317)
Q Consensus 171 ~svr~~~~~~~~~~~~~ 187 (317)
+ |.++..++.++.+
T Consensus 157 ~---s~~l~~~~~~~~~ 170 (176)
T PRK08474 157 V---SFSKDRLKNQLIE 170 (176)
T ss_pred e---eeeHHHHHHHHHH
Confidence 9 5678898888754
No 10
>PRK13429 F0F1 ATP synthase subunit delta; Provisional
Probab=99.97 E-value=2.2e-30 Score=226.07 Aligned_cols=155 Identities=26% Similarity=0.357 Sum_probs=148.0
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------------------HHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q psy4192 29 GTDGRYATALYSAATKLKQLDGVEKELISFQK-------------------SLKIEALKIVGQKKNFSAASINLLALLAE 89 (317)
Q Consensus 29 ~va~~YA~AL~~~a~e~~~~~~v~~~l~~l~~-------------------~~K~~ll~~~~~~~~~~~~~~nfL~vl~e 89 (317)
.++++||+|||++|.+.++++.|+++|..+.+ ++|.+++++++++.++++.+.|||++|++
T Consensus 5 ~ia~~YA~AL~~~a~~~~~l~~~~~~l~~i~~~~~~~~~~~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfl~~l~~ 84 (181)
T PRK13429 5 AIARRYAKALFQLAKEKGQLDSVYEELKQLAELLEDSPELRDALSNPVLSAEEKKAVLEKLLGKLKVSPEVLNFLKLLAD 84 (181)
T ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCHHHHHHHhCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 68999999999999999999999999999887 88999999999843599999999999999
Q ss_pred cCCcccHHHHHHHHHHHHHHHcCCCceEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEEEEecCCCcCCcEeccCCcch
Q psy4192 90 NGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGDPKSNALTTAP 169 (317)
Q Consensus 90 ~~r~~~l~~I~~~f~~~~~~~~~~~~v~V~sA~~Ls~~q~~~I~~~l~~~~~~~~~i~l~~~vDpsLIGG~~I~vg~~vi 169 (317)
++|+.++++|+..|.++++++.|+..++|+||.||+++++++|.+.|++++ |+++.+.++|||+||||+++++|+.+|
T Consensus 85 ~~r~~~l~~I~~~f~~~~~~~~~~~~~~v~sa~~ls~~~~~~l~~~L~~~~--~~~~~~~~~vd~sligG~~i~~~~~~i 162 (181)
T PRK13429 85 RRRLGILPEIAARYLELADEQKGIVRATVTSAVPLSEAQQEAIRQKLEKMT--GKKVELDTAVDPSLIGGVVVKIGDKVL 162 (181)
T ss_pred CCcHHHHHHHHHHHHHHHHHhCCEEEEEEEEeecCCHHHHHHHHHHHHHHH--CCEEEEEeeeChhhhCceEEEECCEEE
Confidence 999999999999999999999999999999999999999999999999999 899999999999999999999999999
Q ss_pred hhhhhccchhhhhhhhh
Q psy4192 170 LKLARSFSTSQISQQLV 186 (317)
Q Consensus 170 D~svr~~~~~~~~~~~~ 186 (317)
|+|+++ .+++++++|.
T Consensus 163 D~Si~~-~L~~l~~~l~ 178 (181)
T PRK13429 163 DASVRT-QLRRLKETLK 178 (181)
T ss_pred ehhHHH-HHHHHHHHHh
Confidence 999998 8888888774
No 11
>PF00213 OSCP: ATP synthase delta (OSCP) subunit; InterPro: IPR000711 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This family represents subunits called delta in bacterial and chloroplast ATPase, or OSCP (oligomycin sensitivity conferral protein) in mitochondrial ATPase (note that in mitochondria there is a different delta subunit, IPR001469 from INTERPRO). The OSCP/delta subunit appears to be part of the peripheral stalk that holds the F1 complex alpha3beta3 catalytic core stationary against the torque of the rotating central stalk, and links subunit A of the F0 complex with the F1 complex. In mitochondria, the peripheral stalk consists of OSCP, as well as F0 components F6, B and D. In bacteria and chloroplasts the peripheral stalks have different subunit compositions: delta and two copies of F0 component B (bacteria), or delta and F0 components B and B' (chloroplasts) [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport; PDB: 2A7U_B 1ABV_A 2WSS_S 2BO5_A 2JMX_A.
Probab=99.97 E-value=4.9e-34 Score=246.95 Aligned_cols=152 Identities=30% Similarity=0.398 Sum_probs=110.8
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------------------HHHHHHHHHHhccCCCCHHHHHHHHHHHHc
Q psy4192 30 TDGRYATALYSAATKLKQLDGVEKELISFQK-------------------SLKIEALKIVGQKKNFSAASINLLALLAEN 90 (317)
Q Consensus 30 va~~YA~AL~~~a~e~~~~~~v~~~l~~l~~-------------------~~K~~ll~~~~~~~~~~~~~~nfL~vl~e~ 90 (317)
||++||+|||+.|.+.|.++.|.++|+.+.. ++|.++++++|+ +++++.+.|||++|+++
T Consensus 1 ia~~YA~AL~~~a~e~~~l~~v~~~l~~l~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~-~~~~~~~~nfL~~l~~~ 79 (172)
T PF00213_consen 1 IAKRYAKALFELAKEEGKLDEVLEELQSLLEILKSNPELRKFLESPFIPKEEKKELLDEIFK-GKLSEETVNFLKLLIDN 79 (172)
T ss_dssp HHHCHHHHHHHHCCCCTTHHHHHHHHHHH-HHHCCSCCCHHHHT-TTTTCCCCCCCCCHHCT-TT-SCCCCHHHHHHCCT
T ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCHHHHHHHcCccccHHHHHHHHHHHHc-ccCCHHHHHHHHHHHhc
Confidence 6899999999999999999999999999965 678999999997 37999999999999999
Q ss_pred CCcccHHHHHHHHHHHHHHHcCCCceEEEeecCCCHHHHHHHHHHHHHHhcCCC-eEEEEEEecCCCcCCcEeccCCcch
Q psy4192 91 GKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGE-NILLTTKVDPSIIGDPKSNALTTAP 169 (317)
Q Consensus 91 ~r~~~l~~I~~~f~~~~~~~~~~~~v~V~sA~~Ls~~q~~~I~~~l~~~~~~~~-~i~l~~~vDpsLIGG~~I~vg~~vi 169 (317)
||++++++|+.+|.++++.+.|+..|+|+||.||+++|+++|++.+++++ |+ ++.++++|||+||||++|++||++|
T Consensus 80 ~r~~~l~~i~~~~~~~~~~~~~~~~~~V~sA~~l~~~q~~~l~~~l~~~~--~~~~v~~~~~vD~sLigG~~i~~~~~~i 157 (172)
T PF00213_consen 80 NRLSLLPEILEEFEELVNEHNGIVEATVTSAFPLSEEQKKKLEKKLKKKY--GKKKVELNYKVDPSLIGGFIIEVGDKVI 157 (172)
T ss_dssp T-CCCHHHHHHHHHHHHHHHCCTS-B-SSS-B----SSSTTTTTTCCCTT--TT-------------------------T
T ss_pred CCcccHHHHHHHHHHHHHHHcCeEEEEEEEecCCCHHHHHHHHHHHHHHH--CCCeeeEEEEEccccCcEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999999999 56 9999999999999999999999999
Q ss_pred hhhhhccchhhhhhhh
Q psy4192 170 LKLARSFSTSQISQQL 185 (317)
Q Consensus 170 D~svr~~~~~~~~~~~ 185 (317)
|+|+++ .+.+++.+|
T Consensus 158 D~Sv~~-~L~~l~~~L 172 (172)
T PF00213_consen 158 DASVKS-RLEQLKKEL 172 (172)
T ss_dssp TTTTTT-TTTTT-TTT
T ss_pred ehhHHH-HHHHHHhcC
Confidence 999999 888888765
No 12
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=99.97 E-value=3.2e-30 Score=253.04 Aligned_cols=161 Identities=19% Similarity=0.218 Sum_probs=153.1
Q ss_pred CCchhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------------------HHHHHHHHHHhccC-CCCHHHHH
Q psy4192 23 APVQVFGTDGRYATALYSAATKLKQLDGVEKELISFQK-------------------SLKIEALKIVGQKK-NFSAASIN 82 (317)
Q Consensus 23 ~~~~~~~va~~YA~AL~~~a~e~~~~~~v~~~l~~l~~-------------------~~K~~ll~~~~~~~-~~~~~~~n 82 (317)
|-=...++.+.|++|||++|.+.|.++.|+++|..+.. ++|.+++..+|++. ++++.+.|
T Consensus 264 ~~dl~~~~~~~~~~AL~~~A~e~~~l~~v~~eL~~~~~~l~~~~el~~~L~~p~i~~~~K~~ll~~l~~~~~~~~~~~~n 343 (445)
T PRK13428 264 NSDLIDALEHVARLALLERAERAGQVDEVEDQLFRFSRILDAQPRLAILLSDYTVPADGRVALLRKVLGGASTVNPVTVA 343 (445)
T ss_pred cccHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCHHHHHHHHHHHHhccccCCHHHHH
Confidence 33456789999999999999999999999999999988 88999999999731 69999999
Q ss_pred HHHHHHHcCCcccHHHHHHHHHHHHHHHcCCCceEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEEEEecCCCcCCcEe
Q psy4192 83 LLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGDPKS 162 (317)
Q Consensus 83 fL~vl~e~~r~~~l~~I~~~f~~~~~~~~~~~~v~V~sA~~Ls~~q~~~I~~~l~~~~~~~~~i~l~~~vDpsLIGG~~I 162 (317)
||.++++++|+..+++|+..|.+++++++|+..|+|+||.|||++|+++|.+.|+++| |++|.++++|||+||||++|
T Consensus 344 fl~~lv~~~R~~~l~~i~~~~~~l~~~~~g~~~a~VtsA~pLs~~q~~~L~~~L~k~~--g~~V~l~~~VDpsLiGGivI 421 (445)
T PRK13428 344 LLSQTVELLRGQPAEEAVLFLAELAVARRGEVVAQVSAAAELSDAQRTRLTEVLSRIY--GRPVSVQLHIDPELLGGLSI 421 (445)
T ss_pred HHHHHHHCCchhhHHHHHHHHHHHHHHHCCeeEEEEEeecCCCHHHHHHHHHHHHHHH--CCceEEEeeeCchhhCceEE
Confidence 9999999999999999999999999999999999999999999999999999999999 89999999999999999999
Q ss_pred ccCCcchhhhhhccchhhhhhhhh
Q psy4192 163 NALTTAPLKLARSFSTSQISQQLV 186 (317)
Q Consensus 163 ~vg~~viD~svr~~~~~~~~~~~~ 186 (317)
++||.+||+||++ .+.+++++|+
T Consensus 422 ~vGd~viD~Sv~~-rL~~l~~~l~ 444 (445)
T PRK13428 422 AVGDEVIDGTLSS-RLAAAEAQLP 444 (445)
T ss_pred EECCEEeehhHHH-HHHHHHhhCC
Confidence 9999999999999 9999999886
No 13
>PRK05758 F0F1 ATP synthase subunit delta; Validated
Probab=99.96 E-value=2.9e-29 Score=218.25 Aligned_cols=153 Identities=27% Similarity=0.336 Sum_probs=144.9
Q ss_pred hhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------------------HHHHHHHHHHhccCCCCHHHHHHHHHHH
Q psy4192 28 FGTDGRYATALYSAATKLKQLDGVEKELISFQK-------------------SLKIEALKIVGQKKNFSAASINLLALLA 88 (317)
Q Consensus 28 ~~va~~YA~AL~~~a~e~~~~~~v~~~l~~l~~-------------------~~K~~ll~~~~~~~~~~~~~~nfL~vl~ 88 (317)
..++++||+|||++|.+.+.++.|+++|.. .+ ++|.++++++|+ +.++.+.|||.+|+
T Consensus 5 ~~~a~~YA~AL~~~a~~~~~~~~v~~~l~~-~~~~~~~~~~~~~l~~p~i~~~~K~~~l~~~~~--~~~~~~~nfL~~l~ 81 (177)
T PRK05758 5 STVARPYAKALFEVALEKGSLDAWSEELTF-LAEVAENEDLAALLSSPLVSAEQKKKLLAAVFK--SLSEYVQNFLKVLA 81 (177)
T ss_pred hhhHHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHHhcCHHHHHHHhCCCCCHHHHHHHHHHHHc--cCCHHHHHHHHHHH
Confidence 578999999999999999999999999988 54 889999999997 34999999999999
Q ss_pred HcCCcccHHHHHHHHHHHHHHHcCCCceEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEEEEecCCCcCCcEeccCCcc
Q psy4192 89 ENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGDPKSNALTTA 168 (317)
Q Consensus 89 e~~r~~~l~~I~~~f~~~~~~~~~~~~v~V~sA~~Ls~~q~~~I~~~l~~~~~~~~~i~l~~~vDpsLIGG~~I~vg~~v 168 (317)
++||+.++++|+.+|.+++++..|+..++|+||.||+++++++|.+.+++.+ |+++.+.+++||+|+||+++++|+++
T Consensus 82 ~~~r~~~l~~i~~~~~~~~~~~~~~~~~~v~sa~~l~~~~~~~i~~~l~~~~--~~~v~l~~~vd~~ligG~~i~~~~~~ 159 (177)
T PRK05758 82 ENGRLALLPEILEQFEALRAEHENIVDAEVTSAFPLSEEQLDKLKAALEKRL--GRKVKLNEKVDPSLIGGVIIKVGDRV 159 (177)
T ss_pred HCCcHHHHHHHHHHHHHHHHHHcCEEEEEEEEccCCCHHHHHHHHHHHHHHH--CCeeEEEeeEChHHhCceEEEECCEE
Confidence 9999999999999999999999999999999999999999999999999999 78899999999999999999999999
Q ss_pred hhhhhhccchhhhhhhhh
Q psy4192 169 PLKLARSFSTSQISQQLV 186 (317)
Q Consensus 169 iD~svr~~~~~~~~~~~~ 186 (317)
+|+|+++ .++++++.+.
T Consensus 160 ~d~Si~~-~L~~l~~~l~ 176 (177)
T PRK05758 160 IDGSVRG-KLERLKDALK 176 (177)
T ss_pred eehhHHH-HHHHHHHHhc
Confidence 9999998 8888888764
No 14
>KOG1662|consensus
Probab=99.94 E-value=7.3e-27 Score=199.51 Aligned_cols=136 Identities=43% Similarity=0.668 Sum_probs=131.1
Q ss_pred hhhhhhh-hccCcccccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhCCHHHHHhhhCCCCCHHHHHHHHHHHhhc
Q psy4192 179 SQISQQL-VKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQKSLKIEALKIVGQK 257 (317)
Q Consensus 179 ~~~~~~~-~~~~~~~~~ia~~YA~AL~~~A~e~~~l~~v~~~L~~l~~v~~~~~~l~~~L~~p~i~~~~K~~ll~~v~~~ 257 (317)
.++..++ ++||+|..+++++||.|||..|..++++|.++.+|..+.++++.+|+|.+|+.||.++.+.|...|+++++.
T Consensus 16 ~~aaaq~tv~pPVql~G~eG~YAtaLY~AA~K~~~ld~vetdL~kl~~v~k~~pk~~~f~~nP~l~~~~k~~~i~di~~~ 95 (210)
T KOG1662|consen 16 ARAAAQLTVKPPVQLYGLEGRYATALYSAAVKNSKLDQVETDLNKLEQVLKTDPKFAQFVLNPTLTREKKKTAIDDIVEK 95 (210)
T ss_pred HHHHHhCCCCCCeEEecccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChHHHHHhcCCccchHHHHHHHHHHHHH
Confidence 4556666 999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHcCceeEEEEeeccCCCCCCC
Q psy4192 258 KNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARFWLTGHPS 314 (317)
Q Consensus 258 ~~~~~~~~nfL~lL~~~~R~~~l~~I~~~f~~l~~~~~~~~~~~V~SA~~Ls~~q~~ 314 (317)
.++++.+.|||.+|+||||+..+.+|+.+|..+++.|+|++.|+||||.||++.+++
T Consensus 96 ~~~~~~t~NflnlLaeNgRL~~l~~Ivk~F~~lm~ahrGev~~~VtSa~pLd~~~~k 152 (210)
T KOG1662|consen 96 LKLAPLTKNFLNLLAENGRLNNLTEIVKAFETLMNAHRGEVKVEVTSAEPLDAKQLK 152 (210)
T ss_pred hcccHhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHhCCceEEEEEecccCChHHHH
Confidence 899999999999999999999999999999999999999999999999999998875
No 15
>PRK13436 F0F1 ATP synthase subunit delta; Provisional
Probab=99.92 E-value=3.6e-25 Score=192.81 Aligned_cols=123 Identities=17% Similarity=0.157 Sum_probs=118.5
Q ss_pred cccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhCCHHHHHhhhCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q psy4192 192 VFGTDGRYATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALL 271 (317)
Q Consensus 192 ~~~ia~~YA~AL~~~A~e~~~l~~v~~~L~~l~~v~~~~~~l~~~L~~p~i~~~~K~~ll~~v~~~~~~~~~~~nfL~lL 271 (317)
.+.+|+|||+|||+.|.+.+.+++|.++|..+.+++.++|+|+.+|.||.++.++|.++++.+|++ ++++.+.|||++|
T Consensus 4 ~~~va~~YA~AL~~~a~e~~~l~~v~~~l~~~~~~~~~~~~l~~~l~~P~i~~~~K~~~l~~l~~~-~~~~~~~nfl~ll 82 (179)
T PRK13436 4 KNKNIYNYAEALFDIANEENNVEKYINEVFKIIEILKNNKDLIKLLTSYFIDKEEKFKIIDKIFSA-KIDIYLVNFLKIL 82 (179)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcChHHHHHHcCCCCCHHHHHHHHHHHHhc-cCCHHHHHHHHHH
Confidence 357899999999999999999999999999999999999999999999999999999999999985 8999999999999
Q ss_pred HHcCCcccHHHHHHHHHHHHHHHcCceeEEEEeeccCCCCCCCC
Q psy4192 272 AENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARFWLTGHPSN 315 (317)
Q Consensus 272 ~~~~R~~~l~~I~~~f~~l~~~~~~~~~~~V~SA~~Ls~~q~~~ 315 (317)
++++|+..+++|+++|..++++++|+..|+|+||.|||++|++.
T Consensus 83 ~~~~R~~~l~~I~~~f~~~~~~~~~~~~~~V~sA~~Ls~~~~~~ 126 (179)
T PRK13436 83 AKNNLFIYIKQILKKFVKLSNEKLNITYGEIYTTEPLSEVQISR 126 (179)
T ss_pred HHCChHHHHHHHHHHHHHHHHHHcCeEEEEEEecCCCCHHHHHH
Confidence 99999999999999999999999999999999999999998754
No 16
>COG0712 AtpH F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) [Energy production and conversion]
Probab=99.91 E-value=2.3e-24 Score=187.03 Aligned_cols=124 Identities=27% Similarity=0.323 Sum_probs=118.5
Q ss_pred cccccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhCCHHHHHhhhCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHH
Q psy4192 190 VQVFGTDGRYATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLA 269 (317)
Q Consensus 190 ~~~~~ia~~YA~AL~~~A~e~~~l~~v~~~L~~l~~v~~~~~~l~~~L~~p~i~~~~K~~ll~~v~~~~~~~~~~~nfL~ 269 (317)
+..+++|+|||+|||+.|.|++++++|.++|..+.++++++|+|+.+|.||.++.++|.+++.++|++ ..++.+.|||.
T Consensus 2 ~~~~~va~~YA~ALf~~A~e~~~~~~~~~~L~~~~~i~~~~~~l~~ll~sp~~~~~~k~~li~~i~~~-~~~~~~~nfL~ 80 (178)
T COG0712 2 SELSTVARRYAKALFELAEEKGQLEEVEEELTFLAEILKNSPKLKQLLSSPAVSAEDKKELLISIFKK-IGDPLLQNFLR 80 (178)
T ss_pred chhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCHhHHHHhcCcCCCHHHHHHHHHHHHhc-cCcHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999984 44499999999
Q ss_pred HHHHcCCcccHHHHHHHHHHHHHHHcCceeEEEEeeccCCCCCCC
Q psy4192 270 LLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARFWLTGHPS 314 (317)
Q Consensus 270 lL~~~~R~~~l~~I~~~f~~l~~~~~~~~~~~V~SA~~Ls~~q~~ 314 (317)
+|++|+|+.++++|+..|..++++++|++.|+||||.|||++|++
T Consensus 81 ll~en~Rl~~l~~I~~~~~~l~~~~~~~~~a~V~SA~~Ls~~q~~ 125 (178)
T COG0712 81 LLAENKRLNLLPEILEEFLKLAAESRGIVEAEVTSAFELSDEQLT 125 (178)
T ss_pred HHHHccchhhHHHHHHHHHHHHHHhcCceEEEEEEcCCCCHHHHH
Confidence 999999999999999999999999999999999999999999875
No 17
>PRK13434 F0F1 ATP synthase subunit delta; Provisional
Probab=99.91 E-value=9.3e-24 Score=184.76 Aligned_cols=120 Identities=23% Similarity=0.344 Sum_probs=114.1
Q ss_pred cccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhCCHHHHHhhhCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q psy4192 192 VFGTDGRYATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALL 271 (317)
Q Consensus 192 ~~~ia~~YA~AL~~~A~e~~~l~~v~~~L~~l~~v~~~~~~l~~~L~~p~i~~~~K~~ll~~v~~~~~~~~~~~nfL~lL 271 (317)
.+++|+|||+|||+ +.+.+++|.++|..+.+++.++|+|+.+|.||.++.++|.+++.++|++ ++++.+.|||++|
T Consensus 3 ~~~va~rYA~AL~~---~~~~l~~v~~~l~~l~~~~~~~~~l~~~l~~P~i~~~~K~~~l~~~~~~-~~~~~~~nfl~lL 78 (184)
T PRK13434 3 DSGVSKVYASALLG---AANSPEEVEQELGDLVQLLFKDEKIRNFFLSPTVSPEEKEQTLAKNLRG-KISDITLNFLGVL 78 (184)
T ss_pred chhhHHHHHHHHHH---hcCCHHHHHHHHHHHHHHHHcCHHHHHHHhCCCCCHHHHHHHHHHHHHc-cCCHHHHHHHHHH
Confidence 46899999999999 5689999999999999999999999999999999999999999999974 8999999999999
Q ss_pred HHcCCcccHHHHHHHHHHHHHHHcCceeEEEEeeccCCCCCCCC
Q psy4192 272 AENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARFWLTGHPSN 315 (317)
Q Consensus 272 ~~~~R~~~l~~I~~~f~~l~~~~~~~~~~~V~SA~~Ls~~q~~~ 315 (317)
++|+|+..+++|+++|.+++++++|++.|+|+||.|||++|++.
T Consensus 79 ~e~~R~~~l~~I~~~f~~l~~~~~~~~~~~V~sA~~Ls~~q~~~ 122 (184)
T PRK13434 79 LNKGRFIYLPEIQKDFTVELDKKKGRVRAQIVSYPSLEPAQVDK 122 (184)
T ss_pred HHCCcHHHHHHHHHHHHHHHHHHcCeEEEEEEEcCCCCHHHHHH
Confidence 99999999999999999999999999999999999999988653
No 18
>CHL00119 atpD ATP synthase CF1 delta subunit; Validated
Probab=99.91 E-value=9.1e-24 Score=184.81 Aligned_cols=124 Identities=19% Similarity=0.254 Sum_probs=119.2
Q ss_pred cccccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhCCHHHHHhhhCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHH
Q psy4192 190 VQVFGTDGRYATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLA 269 (317)
Q Consensus 190 ~~~~~ia~~YA~AL~~~A~e~~~l~~v~~~L~~l~~v~~~~~~l~~~L~~p~i~~~~K~~ll~~v~~~~~~~~~~~nfL~ 269 (317)
+..+.+|++||+|||++|.+.+.+++|.++|..+.+++.++|+|+++|.||.++.++|.++++.+|++ ++++.+.|||+
T Consensus 3 ~~~~~va~~YA~AL~~~a~e~~~l~~v~~~l~~l~~~~~~~~~l~~~l~~p~i~~~~K~~ii~~~~~~-~~~~~~~nfl~ 81 (184)
T CHL00119 3 PLVSKIAQPYAEALLEFAKEKNIMEQITADIQLILTFLNESPELKKFLANPLISKNAKKEVIKKTFGS-QINENTLKFLM 81 (184)
T ss_pred chHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCHHHHHHHhCCCCCHHHHHHHHHHHHHh-ccCHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999984 79999999999
Q ss_pred HHHHcCCcccHHHHHHHHHHHHHHHcCceeEEEEeeccCCCCCCC
Q psy4192 270 LLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARFWLTGHPS 314 (317)
Q Consensus 270 lL~~~~R~~~l~~I~~~f~~l~~~~~~~~~~~V~SA~~Ls~~q~~ 314 (317)
+|++|+|+..+++|+.+|.+++++++|+..++|+||+||++++++
T Consensus 82 ~L~~~~r~~~l~~I~~~f~~~~~~~~~~~~~~v~sa~~L~~~~~~ 126 (184)
T CHL00119 82 VLVDRGRIALLDAIIEKYLELVYKLASIKIAEVSTAVPLSSAQEE 126 (184)
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHhcCeEEEEEEeccCCCHHHHH
Confidence 999999999999999999999999999999999999999998764
No 19
>PRK08474 F0F1 ATP synthase subunit delta; Validated
Probab=99.90 E-value=1.1e-23 Score=182.90 Aligned_cols=118 Identities=25% Similarity=0.282 Sum_probs=112.0
Q ss_pred ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhCCHHHHHhhhCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q psy4192 193 FGTDGRYATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLA 272 (317)
Q Consensus 193 ~~ia~~YA~AL~~~A~e~~~l~~v~~~L~~l~~v~~~~~~l~~~L~~p~i~~~~K~~ll~~v~~~~~~~~~~~nfL~lL~ 272 (317)
..+|+|||+|||++|. ++.+++|.++|..+..+++ +|+|+++|.||.++.++|.++++.+|+ +.++.+.|||++|+
T Consensus 3 ~~va~~YA~ALf~~a~-~~~l~~v~~~l~~l~~~~~-~~~l~~~l~~P~i~~~~K~~vi~~~~~--~~~~~~~nFL~vLi 78 (176)
T PRK08474 3 ELIAKRYAKALLSSLS-SDELNDIYSNLKILSSAFA-DEKFKEIISSPEISKEQKIEFLLSFVD--NANAKFQNFIKLLA 78 (176)
T ss_pred hhhHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHC-ChhHHHHHhCCCCCHHHHHHHHHHHHh--ccCHHHHHHHHHHH
Confidence 3689999999999985 6899999999999999995 799999999999999999999999997 46899999999999
Q ss_pred HcCCcccHHHHHHHHHHHHHHHcCceeEEEEeeccCCCCCCC
Q psy4192 273 ENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARFWLTGHPS 314 (317)
Q Consensus 273 ~~~R~~~l~~I~~~f~~l~~~~~~~~~~~V~SA~~Ls~~q~~ 314 (317)
+|+|+..|++|+.+|..++++.+|++.|+|+||.|||++|++
T Consensus 79 ~n~R~~~L~~I~~~f~~~~~~~~~~~~~~V~SA~~Ls~~q~~ 120 (176)
T PRK08474 79 ENKRLELIPAIAKELERQIALKENEYVGVVYSNEKLSEETLK 120 (176)
T ss_pred HCChHHHHHHHHHHHHHHHHHHcCeEEEEEEECccCCHHHHH
Confidence 999999999999999999999999999999999999998865
No 20
>TIGR01145 ATP_synt_delta ATP synthase, F1 delta subunit. This model describes the ATP synthase delta subunit in bacteria, mitochondria, and chloroplasts. It is sometimes called OSCP for Oligomycin Sensitivity Conferring Protein. F1/F0-ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Delta subunit belongs to the F1 cluster or sector and functionally implicated in the overall stability of the complex. Expression of truncated forms of this subunit results in low ATPase activity.
Probab=99.90 E-value=2.6e-23 Score=180.07 Aligned_cols=119 Identities=27% Similarity=0.387 Sum_probs=115.3
Q ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhCCHHHHHhhhCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHc
Q psy4192 195 TDGRYATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAEN 274 (317)
Q Consensus 195 ia~~YA~AL~~~A~e~~~l~~v~~~L~~l~~v~~~~~~l~~~L~~p~i~~~~K~~ll~~v~~~~~~~~~~~nfL~lL~~~ 274 (317)
++++||+|||+.|.+++++++|.++|..+..+++++|+|+++|.||.++.++|.++++++|++ ++++.+.|||++|+++
T Consensus 1 va~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~l~~~-~~~~~~~nfl~~l~~~ 79 (172)
T TIGR01145 1 VARPYAKALFEIANEKSSLEEWGEMLNFVKEVLKNNKELKKFLSNPLISAEKKKEFIKNVFGE-QLDESSLNLLLLLAEN 79 (172)
T ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhCCHHHHHHHhCCCCCHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHC
Confidence 579999999999999999999999999999999999999999999999999999999999984 8999999999999999
Q ss_pred CCcccHHHHHHHHHHHHHHHcCceeEEEEeeccCCCCCCC
Q psy4192 275 GKIKNIDGVINNFSIIMAAHRGDLPVEVITARFWLTGHPS 314 (317)
Q Consensus 275 ~R~~~l~~I~~~f~~l~~~~~~~~~~~V~SA~~Ls~~q~~ 314 (317)
+|+..+++|+.+|..+++++.|++.++|+||.||++++++
T Consensus 80 ~r~~~l~~I~~~~~~~~~~~~~~~~~~v~sa~~L~~~~~~ 119 (172)
T TIGR01145 80 GRLAALPDILDQFLKLSYEAQQTADVEVISAKPLTEDQQA 119 (172)
T ss_pred CcHHHHHHHHHHHHHHHHHhcCEEEEEEEEccCCCHHHHH
Confidence 9999999999999999999999999999999999998764
No 21
>PRK13431 F0F1 ATP synthase subunit delta; Provisional
Probab=99.89 E-value=2.3e-22 Score=174.13 Aligned_cols=150 Identities=12% Similarity=0.122 Sum_probs=134.9
Q ss_pred hhhhHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH----------------HHHHHHHHHHhc---cCCCCHHHHHHHHHH
Q psy4192 28 FGTDGRYATALYSAATKL-KQLDGVEKELISFQK----------------SLKIEALKIVGQ---KKNFSAASINLLALL 87 (317)
Q Consensus 28 ~~va~~YA~AL~~~a~e~-~~~~~v~~~l~~l~~----------------~~K~~ll~~~~~---~~~~~~~~~nfL~vl 87 (317)
..||+|||+|||++|.+. +.++.++++|..+.. ++|.+++.++++ ++..++.+.|||++|
T Consensus 5 g~IAkRYAkAL~~~a~e~~~~le~v~~~L~~L~~~f~~~el~~il~~P~~~~Kkk~l~~l~~~a~~~~~~~~~~NFl~LL 84 (180)
T PRK13431 5 KVISKHYAKALKNHTKGDLALLEEIVVGLKNVAEAIKLHKLNQVLAHVSLKVKKEVVFEILEKITSIKACSVLKPVMEVV 84 (180)
T ss_pred chhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccHHHHHHHhCccHHHHHHHHHHHHhhhccccccHHHHHHHHHH
Confidence 359999999999999999 999999999999988 788888888886 136899999999999
Q ss_pred HHcCCcccHHHHHHHHHHHHHHHcCCCceEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEEEEecCCCcCCcEeccCCc
Q psy4192 88 AENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGDPKSNALTT 167 (317)
Q Consensus 88 ~e~~r~~~l~~I~~~f~~~~~~~~~~~~v~V~sA~~Ls~~q~~~I~~~l~~~~~~~~~i~l~~~vDpsLIGG~~I~vg~~ 167 (317)
++|+|+.+||+|+.+ ++++..|+..|+|+||.||+++++++|.+.|++++ |+++.+.+.+++ .-|++|.++|.
T Consensus 85 ~en~Rl~~LpeIa~~---L~~~~~~i~~~~V~SA~~Ls~~~~~~I~~~L~kk~--g~kV~L~~~~~~--~~gik~~v~~l 157 (180)
T PRK13431 85 LKNNRLDMLELITEE---LSFDSKRTLEATLLVPEKLENNELEAVQQKLQARF--NAPVEIAQDTWS--KKGVSLSVSSL 157 (180)
T ss_pred HHcChHHHHHHHHHH---HHHHHcCeEEEEEEecccCCHHHHHHHHHHHHHHH--CCeEEEEeeccC--CCceEEEEecC
Confidence 999999999999994 99999999999999999999999999999999999 889999999988 88999999997
Q ss_pred chhhhhhccchhhhhhhhhc
Q psy4192 168 APLKLARSFSTSQISQQLVK 187 (317)
Q Consensus 168 viD~svr~~~~~~~~~~~~~ 187 (317)
-+ .-|||-+.+..+..+
T Consensus 158 g~---ei~fs~~~~~~~~~~ 174 (180)
T PRK13431 158 DL---EIGFSKEDILKKIEK 174 (180)
T ss_pred ce---EEEeeHHHHHHHHHH
Confidence 76 567887666655544
No 22
>PRK13429 F0F1 ATP synthase subunit delta; Provisional
Probab=99.89 E-value=1.4e-22 Score=176.91 Aligned_cols=122 Identities=23% Similarity=0.303 Sum_probs=117.2
Q ss_pred ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhCCHHHHHhhhCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q psy4192 193 FGTDGRYATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLA 272 (317)
Q Consensus 193 ~~ia~~YA~AL~~~A~e~~~l~~v~~~L~~l~~v~~~~~~l~~~L~~p~i~~~~K~~ll~~v~~~~~~~~~~~nfL~lL~ 272 (317)
..++++||+|||++|.+++++++|.++|..+..+++++|+|+.+|.||.++.++|.++++++|++.++++.+.|||++|+
T Consensus 4 ~~ia~~YA~AL~~~a~~~~~l~~~~~~l~~i~~~~~~~~~~~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfl~~l~ 83 (181)
T PRK13429 4 NAIARRYAKALFQLAKEKGQLDSVYEELKQLAELLEDSPELRDALSNPVLSAEEKKAVLEKLLGKLKVSPEVLNFLKLLA 83 (181)
T ss_pred chhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCHHHHHHHhCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999985459999999999999
Q ss_pred HcCCcccHHHHHHHHHHHHHHHcCceeEEEEeeccCCCCCCC
Q psy4192 273 ENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARFWLTGHPS 314 (317)
Q Consensus 273 ~~~R~~~l~~I~~~f~~l~~~~~~~~~~~V~SA~~Ls~~q~~ 314 (317)
+++|+..+++|+..|.++++++.|+..|+|+||.||++++.+
T Consensus 84 ~~~r~~~l~~I~~~f~~~~~~~~~~~~~~v~sa~~ls~~~~~ 125 (181)
T PRK13429 84 DRRRLGILPEIAARYLELADEQKGIVRATVTSAVPLSEAQQE 125 (181)
T ss_pred HCCcHHHHHHHHHHHHHHHHHhCCEEEEEEEEeecCCHHHHH
Confidence 999999999999999999999999999999999999998754
No 23
>PRK13441 F0F1 ATP synthase subunit delta; Provisional
Probab=99.88 E-value=3.9e-22 Score=173.92 Aligned_cols=121 Identities=19% Similarity=0.196 Sum_probs=113.0
Q ss_pred cccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhCCHHHHHhhhCCCCCHHHHHHHHHHHhh--cCCCCHHHHHHHH
Q psy4192 192 VFGTDGRYATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQKSLKIEALKIVGQ--KKNFSAASINLLA 269 (317)
Q Consensus 192 ~~~ia~~YA~AL~~~A~e~~~l~~v~~~L~~l~~v~~~~~~l~~~L~~p~i~~~~K~~ll~~v~~--~~~~~~~~~nfL~ 269 (317)
.+.+++|||+|||++|.+.+.+++|.++|..+.+++.+ ++++|.||.++.++|.++++.+|+ +.++++.+.|||+
T Consensus 3 ~~~va~~YA~AL~~~a~e~~~l~~v~~~l~~~~~~~~~---~~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~~~nfl~ 79 (180)
T PRK13441 3 YSAIASKYARALLNVAIELEKEEEYGEFLDLVCQIYES---AKEFFDNPIVKPEKKVSLIKEIMKEFGQEMDEFFENFLN 79 (180)
T ss_pred cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---HHHHHhCCCCCHHHHHHHHHHHHHHhccccCHHHHHHHH
Confidence 46799999999999999999999999999999999974 578999999999999999999974 2358999999999
Q ss_pred HHHHcCCcccHHHHHHHHHHHHHHHcCceeEEEEeeccCCCCCCCC
Q psy4192 270 LLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARFWLTGHPSN 315 (317)
Q Consensus 270 lL~~~~R~~~l~~I~~~f~~l~~~~~~~~~~~V~SA~~Ls~~q~~~ 315 (317)
+|++|+|+..+++|+..|..++++++|++.|+|+||.||++++++.
T Consensus 80 vL~~~~R~~~l~~I~~~f~~l~~~~~~~~~~~V~sA~~L~~~~~~~ 125 (180)
T PRK13441 80 LVFENKRQKLLPQIRALFEYEKILSEQKVPVNLTTAHELSDEELKL 125 (180)
T ss_pred HHHHCChHHHHHHHHHHHHHHHHHhcCeeEEEEEecccCCHHHHHH
Confidence 9999999999999999999999999999999999999999988653
No 24
>PRK05758 F0F1 ATP synthase subunit delta; Validated
Probab=99.86 E-value=2.1e-21 Score=168.83 Aligned_cols=120 Identities=23% Similarity=0.277 Sum_probs=114.8
Q ss_pred cccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhCCHHHHHhhhCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q psy4192 192 VFGTDGRYATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALL 271 (317)
Q Consensus 192 ~~~ia~~YA~AL~~~A~e~~~l~~v~~~L~~l~~v~~~~~~l~~~L~~p~i~~~~K~~ll~~v~~~~~~~~~~~nfL~lL 271 (317)
.+.++++||+|||+.|.+++.++.|.++|.. .+++.++|+|+.+|.||.++.++|..+|+++|++ .++.+.|||.+|
T Consensus 4 ~~~~a~~YA~AL~~~a~~~~~~~~v~~~l~~-~~~~~~~~~~~~~l~~p~i~~~~K~~~l~~~~~~--~~~~~~nfL~~l 80 (177)
T PRK05758 4 LSTVARPYAKALFEVALEKGSLDAWSEELTF-LAEVAENEDLAALLSSPLVSAEQKKKLLAAVFKS--LSEYVQNFLKVL 80 (177)
T ss_pred chhhHHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHHhcCHHHHHHHhCCCCCHHHHHHHHHHHHcc--CCHHHHHHHHHH
Confidence 4678999999999999999999999999999 9999999999999999999999999999999984 499999999999
Q ss_pred HHcCCcccHHHHHHHHHHHHHHHcCceeEEEEeeccCCCCCCC
Q psy4192 272 AENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARFWLTGHPS 314 (317)
Q Consensus 272 ~~~~R~~~l~~I~~~f~~l~~~~~~~~~~~V~SA~~Ls~~q~~ 314 (317)
++++|+..+++|+.+|.++++++.|++.|+|+||.||++++.+
T Consensus 81 ~~~~r~~~l~~i~~~~~~~~~~~~~~~~~~v~sa~~l~~~~~~ 123 (177)
T PRK05758 81 AENGRLALLPEILEQFEALRAEHENIVDAEVTSAFPLSEEQLD 123 (177)
T ss_pred HHCCcHHHHHHHHHHHHHHHHHHcCEEEEEEEEccCCCHHHHH
Confidence 9999999999999999999999999999999999999998754
No 25
>PRK13431 F0F1 ATP synthase subunit delta; Provisional
Probab=99.86 E-value=2e-21 Score=168.24 Aligned_cols=118 Identities=11% Similarity=0.130 Sum_probs=107.5
Q ss_pred cccchhHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHhhCCHHHHHhhhCCCCCHHHHHHHHHHHhh---cCCCCHHHHHH
Q psy4192 192 VFGTDGRYATALYSAATKL-KQLDGVEKELISFQQALKTDVKFRDFVLDPTIQKSLKIEALKIVGQ---KKNFSAASINL 267 (317)
Q Consensus 192 ~~~ia~~YA~AL~~~A~e~-~~l~~v~~~L~~l~~v~~~~~~l~~~L~~p~i~~~~K~~ll~~v~~---~~~~~~~~~nf 267 (317)
+..||+|||+|||++|.++ +.+++++++|..+.++|.. ++|++++.||.+ ++|.+++.++|+ +..+++.+.||
T Consensus 4 ~g~IAkRYAkAL~~~a~e~~~~le~v~~~L~~L~~~f~~-~el~~il~~P~~--~~Kkk~l~~l~~~a~~~~~~~~~~NF 80 (180)
T PRK13431 4 LKVISKHYAKALKNHTKGDLALLEEIVVGLKNVAEAIKL-HKLNQVLAHVSL--KVKKEVVFEILEKITSIKACSVLKPV 80 (180)
T ss_pred cchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcc-HHHHHHHhCccH--HHHHHHHHHHHhhhccccccHHHHHH
Confidence 4679999999999999999 9999999999999999986 799999999999 777777777775 12689999999
Q ss_pred HHHHHHcCCcccHHHHHHHHHHHHHHHcCceeEEEEeeccCCCCCCCC
Q psy4192 268 LALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARFWLTGHPSN 315 (317)
Q Consensus 268 L~lL~~~~R~~~l~~I~~~f~~l~~~~~~~~~~~V~SA~~Ls~~q~~~ 315 (317)
|++|++|+|+.+||+|+.. ++++++|++.|+|+||+|||+++++.
T Consensus 81 l~LL~en~Rl~~LpeIa~~---L~~~~~~i~~~~V~SA~~Ls~~~~~~ 125 (180)
T PRK13431 81 MEVVLKNNRLDMLELITEE---LSFDSKRTLEATLLVPEKLENNELEA 125 (180)
T ss_pred HHHHHHcChHHHHHHHHHH---HHHHHcCeEEEEEEecccCCHHHHHH
Confidence 9999999999999999994 99999999999999999999988754
No 26
>PRK13430 F0F1 ATP synthase subunit delta; Provisional
Probab=99.85 E-value=5.4e-21 Score=176.62 Aligned_cols=137 Identities=19% Similarity=0.154 Sum_probs=131.2
Q ss_pred hhhhhhhhhccCcccccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhCCHHHHHhhhCCCCCHHHHHHHHHHHhhc
Q psy4192 178 TSQISQQLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQKSLKIEALKIVGQK 257 (317)
Q Consensus 178 ~~~~~~~~~~~~~~~~~ia~~YA~AL~~~A~e~~~l~~v~~~L~~l~~v~~~~~~l~~~L~~p~i~~~~K~~ll~~v~~~ 257 (317)
....+++...|+-...++..-+.+|||+.|.+.|++++|.++|+.+.+++.++|+|+.+|.||.++.++|.+++..+|++
T Consensus 82 ~~~v~~rWs~~~dl~~~~e~l~~~ALf~~A~e~g~ld~v~~eL~~~~~~l~~~~~l~~~L~~p~i~~e~K~~ll~~l~~~ 161 (271)
T PRK13430 82 SDAVRQRWSRPRDLADALEELGVRALLASAEAQGALDDVEDELFRLGRILASNPELRLALSDRAAPAEAKRELLARLLYG 161 (271)
T ss_pred HHHHHhhccCchhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 36677899999999999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred CCCCHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHcCceeEEEEeeccCCCCCCCC
Q psy4192 258 KNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARFWLTGHPSN 315 (317)
Q Consensus 258 ~~~~~~~~nfL~lL~~~~R~~~l~~I~~~f~~l~~~~~~~~~~~V~SA~~Ls~~q~~~ 315 (317)
++++.+.||+.+|++++|+..+++|++.|.+++++++|++.|+|+||+|||++|.+.
T Consensus 162 -~~~~~~~nfl~~lv~~~R~~~l~~i~~~f~~l~~~~~~~~~a~VtSA~pLs~~q~~~ 218 (271)
T PRK13430 162 -KVTPVTERLAEQAVGRPRGRSIEEGLDELSNLAAARRGRSVATVTTAVPLSDEQKQR 218 (271)
T ss_pred -cCCHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHcCeeEEEEEecCCCCHHHHHH
Confidence 799999999999999999999999999999999999999999999999999988753
No 27
>PF00213 OSCP: ATP synthase delta (OSCP) subunit; InterPro: IPR000711 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This family represents subunits called delta in bacterial and chloroplast ATPase, or OSCP (oligomycin sensitivity conferral protein) in mitochondrial ATPase (note that in mitochondria there is a different delta subunit, IPR001469 from INTERPRO). The OSCP/delta subunit appears to be part of the peripheral stalk that holds the F1 complex alpha3beta3 catalytic core stationary against the torque of the rotating central stalk, and links subunit A of the F0 complex with the F1 complex. In mitochondria, the peripheral stalk consists of OSCP, as well as F0 components F6, B and D. In bacteria and chloroplasts the peripheral stalks have different subunit compositions: delta and two copies of F0 component B (bacteria), or delta and F0 components B and B' (chloroplasts) [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport; PDB: 2A7U_B 1ABV_A 2WSS_S 2BO5_A 2JMX_A.
Probab=99.85 E-value=3.9e-23 Score=178.74 Aligned_cols=121 Identities=27% Similarity=0.387 Sum_probs=106.3
Q ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhCCHHHHHhhhCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHc
Q psy4192 195 TDGRYATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAEN 274 (317)
Q Consensus 195 ia~~YA~AL~~~A~e~~~l~~v~~~L~~l~~v~~~~~~l~~~L~~p~i~~~~K~~ll~~v~~~~~~~~~~~nfL~lL~~~ 274 (317)
||++||+|||+.|.+.+.++.|.++|..+..++.++|+|+.+|.||.++.++|.++++.+|++ ++++.+.|||++|+++
T Consensus 1 ia~~YA~AL~~~a~e~~~l~~v~~~l~~l~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~-~~~~~~~nfL~~l~~~ 79 (172)
T PF00213_consen 1 IAKRYAKALFELAKEEGKLDEVLEELQSLLEILKSNPELRKFLESPFIPKEEKKELLDEIFKG-KLSEETVNFLKLLIDN 79 (172)
T ss_dssp HHHCHHHHHHHHCCCCTTHHHHHHHHHHH-HHHCCSCCCHHHHT-TTTTCCCCCCCCCHHCTT-T-SCCCCHHHHHHCCT
T ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCHHHHHHHcCccccHHHHHHHHHHHHcc-cCCHHHHHHHHHHHhc
Confidence 689999999999999999999999999999999999999999999999999999999999984 7999999999999999
Q ss_pred CCcccHHHHHHHHHHHHHHHcCceeEEEEeeccCCCCCCCCC
Q psy4192 275 GKIKNIDGVINNFSIIMAAHRGDLPVEVITARFWLTGHPSNS 316 (317)
Q Consensus 275 ~R~~~l~~I~~~f~~l~~~~~~~~~~~V~SA~~Ls~~q~~~~ 316 (317)
+|+..+++|+..|.++++++.|+..|+|+||.|||++|.+..
T Consensus 80 ~r~~~l~~i~~~~~~~~~~~~~~~~~~V~sA~~l~~~q~~~l 121 (172)
T PF00213_consen 80 NRLSLLPEILEEFEELVNEHNGIVEATVTSAFPLSEEQKKKL 121 (172)
T ss_dssp T-CCCHHHHHHHHHHHHHHHCCTS-B-SSS-B----SSSTTT
T ss_pred CCcccHHHHHHHHHHHHHHHcCeEEEEEEEecCCCHHHHHHH
Confidence 999999999999999999999999999999999999998753
No 28
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=99.82 E-value=5.4e-20 Score=180.85 Aligned_cols=164 Identities=16% Similarity=0.169 Sum_probs=139.8
Q ss_pred ecCCCcCCcEeccCCcchhhhhhc--c--chhhhhhhhhccCcccccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Q psy4192 152 VDPSIIGDPKSNALTTAPLKLARS--F--STSQISQQLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISFQQAL 227 (317)
Q Consensus 152 vDpsLIGG~~I~vg~~viD~svr~--~--~~~~~~~~~~~~~~~~~~ia~~YA~AL~~~A~e~~~l~~v~~~L~~l~~v~ 227 (317)
-||+-=|.-+...=+.++++-+-. . -.+..+++.-.|--..+++.+.|++|||++|.+.|.+++|+++|+.+.+++
T Consensus 224 ~d~~~~~~~k~~l~~~l~~~~~~~~~~~~~~~~~~~rws~~~dl~~~~~~~~~~AL~~~A~e~~~l~~v~~eL~~~~~~l 303 (445)
T PRK13428 224 TEPAEDAAPKIRLVERLFSGKVGAPTLEVLRTAVSQRWSANSDLIDALEHVARLALLERAERAGQVDEVEDQLFRFSRIL 303 (445)
T ss_pred CCCCCChhhHHHHHHHHhCcCCCHHHHHHHHHHHhCccCccccHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 466665555554444444433321 1 225666777777667788999999999999999999999999999999999
Q ss_pred hCCHHHHHhhhCCCCCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHcCceeEEEEeec
Q psy4192 228 KTDVKFRDFVLDPTIQKSLKIEALKIVGQKK-NFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITAR 306 (317)
Q Consensus 228 ~~~~~l~~~L~~p~i~~~~K~~ll~~v~~~~-~~~~~~~nfL~lL~~~~R~~~l~~I~~~f~~l~~~~~~~~~~~V~SA~ 306 (317)
.++|+|+.+|.||.++.++|.+++..+|++. ++++.+.||+.+|++++|+..+++|+..|.+++++++|++.|+||||+
T Consensus 304 ~~~~el~~~L~~p~i~~~~K~~ll~~l~~~~~~~~~~~~nfl~~lv~~~R~~~l~~i~~~~~~l~~~~~g~~~a~VtsA~ 383 (445)
T PRK13428 304 DAQPRLAILLSDYTVPADGRVALLRKVLGGASTVNPVTVALLSQTVELLRGQPAEEAVLFLAELAVARRGEVVAQVSAAA 383 (445)
T ss_pred hcCHHHHHHHhCCCCCHHHHHHHHHHHHhccccCCHHHHHHHHHHHHCCchhhHHHHHHHHHHHHHHHCCeeEEEEEeec
Confidence 9999999999999999999999999999732 699999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCC
Q psy4192 307 FWLTGHPSN 315 (317)
Q Consensus 307 ~Ls~~q~~~ 315 (317)
|||++|.++
T Consensus 384 pLs~~q~~~ 392 (445)
T PRK13428 384 ELSDAQRTR 392 (445)
T ss_pred CCCHHHHHH
Confidence 999988653
No 29
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=99.58 E-value=3.4e-14 Score=129.84 Aligned_cols=105 Identities=16% Similarity=0.187 Sum_probs=82.5
Q ss_pred CCCHHHH-HHHHHHHHcCCcccHHHHHHHHHHHHHHHcCCCceEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEEEEec
Q psy4192 75 NFSAASI-NLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVD 153 (317)
Q Consensus 75 ~~~~~~~-nfL~vl~e~~r~~~l~~I~~~f~~~~~~~~~~~~v~V~sA~~Ls~~q~~~I~~~l~~~~~~~~~i~l~~~vD 153 (317)
.++.... .++.-.++. +..+|+-...+..-.....| ..++|+||+||+++++++|.+.|.+.+ |+++.+++.||
T Consensus 140 ~~d~~~~~~lid~~i~~--l~~l~~~~~~~l~~~~~~~~-~~~~v~sa~~l~~~~~~~i~~~l~~~~--~~~v~~~~~vd 214 (246)
T TIGR03321 140 LADTDLEERMVDVFVQR--LRTLDPDEKAALAEALADSG-NPVLVRSAFELPEEQREQIRDTIRETL--GPEIRLRFQTE 214 (246)
T ss_pred hcChHHHHHHHHHHHHH--hhcCCHHHHHHHHHHHhCCC-CceEEEecCCCCHHHHHHHHHHHHHHH--CCCeeEEeeeC
Confidence 3443333 555655544 55555554454433333344 669999999999999999999999999 78999999999
Q ss_pred CCCcCCcEeccCCcchhhhhhccchhhhhhhh
Q psy4192 154 PSIIGDPKSNALTTAPLKLARSFSTSQISQQL 185 (317)
Q Consensus 154 psLIGG~~I~vg~~viD~svr~~~~~~~~~~~ 185 (317)
|+|||||+|++||++||+|+++ .+.+++.++
T Consensus 215 p~ligGi~l~~g~~~id~Si~~-~L~~l~~~~ 245 (246)
T TIGR03321 215 PDLIGGIELTAGGHKLAWSVDD-YLESLEEDV 245 (246)
T ss_pred chhcCceEEEECCEEEechHHH-HHHHHHhhc
Confidence 9999999999999999999999 888887764
No 30
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=98.58 E-value=6e-07 Score=82.28 Aligned_cols=73 Identities=10% Similarity=-0.005 Sum_probs=65.1
Q ss_pred cCCCceEEEeecCCCHHHHHHHHHHHHH-HhcCCCeEEEEEEecCCCcCCcEeccCCcchhhhhhccchhhhhhhhh
Q psy4192 111 RGDLPVEVITARPLEEADKSELQSTLKL-FAKKGENILLTTKVDPSIIGDPKSNALTTAPLKLARSFSTSQISQQLV 186 (317)
Q Consensus 111 ~~~~~v~V~sA~~Ls~~q~~~I~~~l~~-~~~~~~~i~l~~~vDpsLIGG~~I~vg~~viD~svr~~~~~~~~~~~~ 186 (317)
.+...+.|+||+||++++.++|.+.+.. .+ |..+.+.+.+||+||+|+.+.+||+.+.+|+.+ -++++++.+.
T Consensus 173 ~~~~~~~i~ta~~l~~~~~~~~~~~l~~~~~--~~~~~~~f~~~p~li~Giel~~~~~~i~ws~~~-yl~~l~~~~~ 246 (250)
T PRK14474 173 TTPEMLRIRTSFELSQDLRAQILESLHQTHL--IPGTDIHFVTSPELICGIELKTEGYKIAWTLAE-YLDALESQLT 246 (250)
T ss_pred cCCCCeEEEeCCCCCHHHHHHHHHHHHHHhc--CCCCceeeecCcccccCeEEecCCceEeccHHH-HHHHHHHHHH
Confidence 4666799999999999999999999999 88 788889999999999999999999999999999 4666666543
No 31
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=96.79 E-value=0.0026 Score=59.27 Aligned_cols=100 Identities=13% Similarity=0.062 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHcCCCceEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEEEEecCCC-c
Q psy4192 79 ASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSI-I 157 (317)
Q Consensus 79 ~~~nfL~vl~e~~r~~~l~~I~~~f~~~~~~~~~~~~v~V~sA~~Ls~~q~~~I~~~l~~~~~~~~~i~l~~~vDpsL-I 157 (317)
...+++..+.++++.-.++-|...+..+. +...++|.. .|=+-+........+...+ +....+....||+| -
T Consensus 175 iaekvi~~~~~~~~~~i~~li~~al~~l~----~~~~i~I~V-~p~d~~~l~~~~~~l~~~l--~~~~~i~I~~D~~l~~ 247 (281)
T PRK06669 175 IAKKVIKEISENSKEIALALVKELLKEVK----DATDITIRV-NPEDYEYVKEQKDELISLL--DNEEHLKIYEDDAISK 247 (281)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHcC----cCCcEEEEE-CHHHHHHHHHhHHHHHHhc--CCCCCeEEEECCCCCC
Confidence 44578888888888776766666555543 333455554 3333333344444455555 44456667788777 4
Q ss_pred CCcEeccCCcchhhhhhccchhhhhhhhh
Q psy4192 158 GDPKSNALTTAPLKLARSFSTSQISQQLV 186 (317)
Q Consensus 158 GG~~I~vg~~viD~svr~~~~~~~~~~~~ 186 (317)
||++|..++-.+|+|+.+ ++.+|++.|.
T Consensus 248 GgcvIet~~G~IDasi~t-qLe~l~~~L~ 275 (281)
T PRK06669 248 GGCVIETDFGNIDARIDT-QLKQLKEKLL 275 (281)
T ss_pred CCeEEEcCCCeeeccHHH-HHHHHHHHHH
Confidence 999999999999999999 9998888764
No 32
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=90.90 E-value=5.2 Score=36.70 Aligned_cols=84 Identities=11% Similarity=0.020 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHcCCCceEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEEEEecCCCc-CCcEeccCCcchhhhhh
Q psy4192 96 IDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSII-GDPKSNALTTAPLKLAR 174 (317)
Q Consensus 96 l~~I~~~f~~~~~~~~~~~~v~V~sA~~Ls~~q~~~I~~~l~~~~~~~~~i~l~~~vDpsLI-GG~~I~vg~~viD~svr 174 (317)
+..++..+...+ .+.-.++|+. .|-+-+.+......+...+ +....+....||+|- ||++|..++=.+|+|+.
T Consensus 161 i~~lv~~al~~l---~~~~~i~I~v-~p~d~~~v~~~~~~l~~~~--~~~~~i~i~~D~~l~~GgcvIEt~~G~iDasld 234 (255)
T TIGR03825 161 FQALVRQVLSEV---REFDEVSIYV-HPHWYERVAAQKDELQSIL--PACEHLAVYPDEKLPDGGCYVETNFGRIDASVD 234 (255)
T ss_pred HHHHHHHHHHhc---cCCCcEEEEE-CHHHHHHHHHhHHHHHhhc--CCCCceEEEeCCCCCCCCeEEEcCCceEEeeHH
Confidence 444444444433 2333444443 2223333334445566666 444577888999996 99999999999999999
Q ss_pred ccchhhhhhhhh
Q psy4192 175 SFSTSQISQQLV 186 (317)
Q Consensus 175 ~~~~~~~~~~~~ 186 (317)
+ ++.++++.|.
T Consensus 235 t-qLe~l~~~l~ 245 (255)
T TIGR03825 235 T-QLEQLKEKLL 245 (255)
T ss_pred H-HHHHHHHHHH
Confidence 9 8888877664
No 33
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=90.20 E-value=10 Score=33.07 Aligned_cols=63 Identities=8% Similarity=-0.022 Sum_probs=37.2
Q ss_pred EeecCCCHHHHHHHHHHHHHHhcCCCeEEEEEEecCCCcCCcEec--cCCcchhhhhhccchhhhhhhh
Q psy4192 119 ITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGDPKSN--ALTTAPLKLARSFSTSQISQQL 185 (317)
Q Consensus 119 ~sA~~Ls~~q~~~I~~~l~~~~~~~~~i~l~~~vDpsLIGG~~I~--vg~~viD~svr~~~~~~~~~~~ 185 (317)
..+.|=+.+-.+.....+.+.+ | .+.+...-+++.+|||++. -|+-.+|.|..+ -+..+++.+
T Consensus 124 i~~~~~D~~~~~~~~~~~~~~~--~-~~~i~~~~~~~~~GGvil~s~~g~i~~dnT~e~-~l~~~~~~~ 188 (198)
T PRK03963 124 VRSNERTLKLIDSRLEEIRDEL--G-DVEIELGEPIETIGGVIVETKDGTIRVDNTFEA-RMERLESEL 188 (198)
T ss_pred EEEccccHHHHHHHHHHHHHHh--C-CeEEEECCCCCccceEEEEeCCCCEEEeCcHHH-HHHHHHHHh
Confidence 3444534444444445555666 4 3444433346789999997 677778988887 455444443
No 34
>PF02108 FliH: Flagellar assembly protein FliH; InterPro: IPR018035 This entry represents a region found in the flagellar assembly protein FliH, as well as in type III secretion system protein HrpE. Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export []. The sequence of fliH has been deduced and shown to encode a protein of molecular mass of 25,782 Da. Bacterial HrpE proteins are belived to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) [].
Probab=89.93 E-value=4.7 Score=32.20 Aligned_cols=59 Identities=17% Similarity=0.061 Sum_probs=43.0
Q ss_pred HcCCCceEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEEEEecCCC-cCCcEeccCCcchhhhhhc
Q psy4192 110 HRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSI-IGDPKSNALTTAPLKLARS 175 (317)
Q Consensus 110 ~~~~~~v~V~sA~~Ls~~q~~~I~~~l~~~~~~~~~i~l~~~vDpsL-IGG~~I~vg~~viD~svr~ 175 (317)
..+.-.++|+. +++..+.+.+.+..... +. .++...||+| -||++|..++-.+|+++.+
T Consensus 64 ~~~~~~v~I~v----~p~d~~~l~~~~~~~~~-~~--~~~l~~D~~l~~G~c~iet~~g~iD~~i~~ 123 (128)
T PF02108_consen 64 PRDEEKVTIRV----HPDDYEALEELLEDELP-EL--GWELVADPSLAPGDCRIETEDGIIDASIET 123 (128)
T ss_pred hccCCCeEEEE----CHHHHHHHHHHHHHHHh-hc--CCEEEecCCCCCCCEEEEECCeeEEeCHHH
Confidence 33444455543 68888888888875542 22 2377799997 6889999999999999887
No 35
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=87.94 E-value=7.5 Score=33.72 Aligned_cols=32 Identities=6% Similarity=-0.093 Sum_probs=24.1
Q ss_pred ecCCCcCCcEec--cCCcchhhhhhccchhhhhhh
Q psy4192 152 VDPSIIGDPKSN--ALTTAPLKLARSFSTSQISQQ 184 (317)
Q Consensus 152 vDpsLIGG~~I~--vg~~viD~svr~~~~~~~~~~ 184 (317)
-+++++|||++. -|+-++|.|..+ -+..+++.
T Consensus 143 ~~~~~~GGvil~~~~g~I~~dnT~~~-rl~~~~~~ 176 (188)
T PRK02292 143 GNIDCLGGVVVESEDGRVRVNNTFDS-ILEDVWED 176 (188)
T ss_pred CCCCCCceEEEEecCCceEEeccHHH-HHHHHHHH
Confidence 468899999998 677778999888 44444443
No 36
>PRK06937 type III secretion system protein; Reviewed
Probab=87.20 E-value=18 Score=31.85 Aligned_cols=72 Identities=11% Similarity=0.016 Sum_probs=49.0
Q ss_pred HcCCCceEEEeecCCCHHHHHHHHHHHHHHhcC-CCeEEEEEEecCCC-cCCcEeccCCcchhhhhhccchhhhhhhhh
Q psy4192 110 HRGDLPVEVITARPLEEADKSELQSTLKLFAKK-GENILLTTKVDPSI-IGDPKSNALTTAPLKLARSFSTSQISQQLV 186 (317)
Q Consensus 110 ~~~~~~v~V~sA~~Ls~~q~~~I~~~l~~~~~~-~~~i~l~~~vDpsL-IGG~~I~vg~~viD~svr~~~~~~~~~~~~ 186 (317)
..+.-.++|. +++++.+.+.+.+...... +..-.+....||+| -||.+|..++=.+|+|+.+ ++.++++.+.
T Consensus 127 l~~~~~v~I~----V~P~D~~~v~~~~~~~~~~~~~~~~l~i~~D~~L~~Ggc~iET~~G~vDasl~t-ql~~l~~al~ 200 (204)
T PRK06937 127 VSNQKQVVVR----VNPDQAAAVREQIAKVLKDFPEVGYLEVVADARLDQGGCILETEVGIIDASLDG-QLEALEQAFH 200 (204)
T ss_pred cccCCeEEEE----ECHHHHHHHHHHHHHHHHhCCCCccEEEEeCCCCCCCCeEEecCCceEEccHHH-HHHHHHHHHH
Confidence 3344445554 3566776776654433210 22235778899998 5789999999999999999 8888877664
No 37
>PRK06328 type III secretion system protein; Validated
Probab=85.62 E-value=13 Score=33.52 Aligned_cols=58 Identities=9% Similarity=-0.007 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHH---HHHHhcCCCeEEEEEEecCCC-cCCcEeccCCcchhhhhhccchhhhhhh
Q psy4192 124 LEEADKSELQST---LKLFAKKGENILLTTKVDPSI-IGDPKSNALTTAPLKLARSFSTSQISQQ 184 (317)
Q Consensus 124 Ls~~q~~~I~~~---l~~~~~~~~~i~l~~~vDpsL-IGG~~I~vg~~viD~svr~~~~~~~~~~ 184 (317)
+++++.+.+.+. +...+ +....+....||+| -||++|..+.-.+|+|+.+ ++.+|++.
T Consensus 138 VnP~D~~~v~~~~~~l~~~~--~~~~~~~I~~D~~L~~GgCiIET~~G~VDasle~-ql~~l~~a 199 (223)
T PRK06328 138 VNPKDLAIVEKSRPELKKIV--EYADSLIISPKADVTPGGCIIETEAGIINAQLDV-QLAALEKA 199 (223)
T ss_pred ECHHHHHHHHHHHHHHHHhc--cCCCceEEEeCCCCCCCCeEEEeCCceEEecHHH-HHHHHHHH
Confidence 356666666554 44445 33346788899999 5779999999999999999 88666653
No 38
>PRK05687 fliH flagellar assembly protein H; Validated
Probab=84.48 E-value=21 Score=32.38 Aligned_cols=59 Identities=14% Similarity=0.014 Sum_probs=45.1
Q ss_pred CCHHHHHHHHHHHHHHhcCCCeEEEEEEecCCC-cCCcEeccCCcchhhhhhccchhhhhhhhh
Q psy4192 124 LEEADKSELQSTLKLFAKKGENILLTTKVDPSI-IGDPKSNALTTAPLKLARSFSTSQISQQLV 186 (317)
Q Consensus 124 Ls~~q~~~I~~~l~~~~~~~~~i~l~~~vDpsL-IGG~~I~vg~~viD~svr~~~~~~~~~~~~ 186 (317)
++++..+.|++.+..... . -.+....||+| -||++|..++-.+|+++.+ ...++.+.|.
T Consensus 182 v~P~D~~~v~~~~~~~~~-~--~~~~l~~D~~l~~Ggc~iet~~g~vDa~l~~-r~~~l~~~l~ 241 (246)
T PRK05687 182 VNPDDLELVEQLLGAELS-L--HGWRLLADPSLHRGGCRISAEEGDVDASLET-RWQEVCRLLA 241 (246)
T ss_pred ECHHHHHHHHHHHhhHHH-h--CCeEEEeCCCcCCCCeEEEeCCCceeccHHH-HHHHHHHHHh
Confidence 578888888888775441 2 24677899999 5889999999999999988 6666655543
No 39
>PRK15322 invasion protein OrgB; Provisional
Probab=75.16 E-value=60 Score=28.85 Aligned_cols=119 Identities=10% Similarity=0.015 Sum_probs=73.0
Q ss_pred CCHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHcCCCceEEEeecCC-CHHHHHHHHHHHHHHhcCCCeEEEEEEecC
Q psy4192 76 FSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPL-EEADKSELQSTLKLFAKKGENILLTTKVDP 154 (317)
Q Consensus 76 ~~~~~~nfL~vl~e~~r~~~l~~I~~~f~~~~~~~~~~~~v~V~sA~~L-s~~q~~~I~~~l~~~~~~~~~i~l~~~vDp 154 (317)
+-.+...++...+++ -..|..++++|..-.....+...+. .|- ..+.-.+|...+...+ +.++.+.++-|+
T Consensus 77 ie~~~r~lls~~Ld~--pd~LL~~le~Wl~~l~~~~~pL~l~----lP~~ak~~~~~L~~~l~e~w--~~~~~i~yhd~~ 148 (210)
T PRK15322 77 IQIYARELFSAAVDH--PETLLTVLDEWLRDFDKPEGQLFLT----LPVNAKKDHQKLMVLLMENW--PGTFNLKYHQEQ 148 (210)
T ss_pred HHHHHHHHHHHHccC--HHHHHHHHHHHHHhCccccCceeEe----cChhhhhhHHHHHHHHHHhc--CCCeEEEEcCCC
Confidence 345566666666666 3366666666665544444333332 232 2444556777777788 678899999998
Q ss_pred CCcCCcEeccCCcchhhhhhccchhhhhhhhhcc----CcccccchhHHHHHHHHHH
Q psy4192 155 SIIGDPKSNALTTAPLKLARSFSTSQISQQLVKA----PVQVFGTDGRYATALYSAA 207 (317)
Q Consensus 155 sLIGG~~I~vg~~viD~svr~~~~~~~~~~~~~~----~~~~~~ia~~YA~AL~~~A 207 (317)
+|++..|+.+..-|-+- .++...+++... |..+-+++..--.||++..
T Consensus 149 ----rFV~~~g~qIaEFsPq~-~v~~a~~~l~~~~d~~~~~~r~ls~~~l~al~~~~ 200 (210)
T PRK15322 149 ----RFIMSCGDQIAEFSPEQ-FVETAVGVIKHHLDELPQDCRTISDNAINALIDEW 200 (210)
T ss_pred ----ceEEEeCCchhccCHHH-HHHHHHHHHHhCccchHHHHHHHhHHHHHHHHHHH
Confidence 89999999998877666 344444444443 4444555555555555543
No 40
>PRK09098 type III secretion system protein HrpB; Validated
Probab=72.25 E-value=76 Score=28.74 Aligned_cols=61 Identities=15% Similarity=0.090 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHHHHhc-CCCeEEEEEEecCCCc-CCcEeccCCcchhhhhhccchhhhhhhhh
Q psy4192 125 EEADKSELQSTLKLFAK-KGENILLTTKVDPSII-GDPKSNALTTAPLKLARSFSTSQISQQLV 186 (317)
Q Consensus 125 s~~q~~~I~~~l~~~~~-~~~~i~l~~~vDpsLI-GG~~I~vg~~viD~svr~~~~~~~~~~~~ 186 (317)
+++..+.+...+..... .|....+....||+|- ||.+|..++=.+|+|+.+ ++..|++.+.
T Consensus 158 ~P~D~~~v~~~~~~~~~~~g~~~~l~Iv~Dp~L~~GgCviET~~G~IDasl~~-ql~~L~~al~ 220 (233)
T PRK09098 158 HPADLDAARAAFGAAAAAGGRNVPVEVVGDPRLAPGACVCEWDFGVFDASLDT-QLRALRRALA 220 (233)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCcceEEEeCCCCCCCCeEEEeCCCeEecCHHH-HHHHHHHHHH
Confidence 55566666655443320 1566778888999995 779999999999999999 8888876553
No 41
>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family. This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)
Probab=64.17 E-value=84 Score=26.17 Aligned_cols=62 Identities=11% Similarity=-0.028 Sum_probs=41.8
Q ss_pred HHHHHHHcCCCceEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEEEEecCCC-cCCcEeccCCcchhhh
Q psy4192 104 SIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSI-IGDPKSNALTTAPLKL 172 (317)
Q Consensus 104 ~~~~~~~~~~~~v~V~sA~~Ls~~q~~~I~~~l~~~~~~~~~i~l~~~vDpsL-IGG~~I~vg~~viD~s 172 (317)
.+.+....+.-.++|.. ++++...+.+.+..... ... ++...||++ -||++|..++=.+|+|
T Consensus 104 ~~al~~~~~~~~v~I~v----~P~d~~~l~~~l~~~~~-~~~--~~i~~D~~l~~G~c~vet~~G~vdas 166 (166)
T TIGR02499 104 RQLLRAVANQGRLTLRV----HPEQLDEVREALAERLA-LEP--WELEPDASLAPGACVLETESGVVDLS 166 (166)
T ss_pred HHHHHhCCCCCceEEEE----CHHHHHHHHHHHHHHhc-cCC--eEEeeCCCCCCCCEEEEeCCceeeCC
Confidence 34444444444455443 56677788888777652 112 788899987 5789999999888876
No 42
>COG1317 FliH Flagellar biosynthesis/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=60.26 E-value=1.3e+02 Score=27.18 Aligned_cols=59 Identities=14% Similarity=0.067 Sum_probs=44.6
Q ss_pred CCHHHHHHHHHHHHHHhcC-CCeEEEEEEecCCC-cCCcEeccCCcchhhhhhccchhhhhhhh
Q psy4192 124 LEEADKSELQSTLKLFAKK-GENILLTTKVDPSI-IGDPKSNALTTAPLKLARSFSTSQISQQL 185 (317)
Q Consensus 124 Ls~~q~~~I~~~l~~~~~~-~~~i~l~~~vDpsL-IGG~~I~vg~~viD~svr~~~~~~~~~~~ 185 (317)
+++++.+.|.+.+....+- +.. +...-||+| -||.+|..+.=.+|+|+-+ ++.++++.+
T Consensus 164 VnP~d~e~i~~~~~~~~~~~~~~--l~l~~D~~l~~GgC~IeTe~G~iDasld~-ql~~L~~~~ 224 (234)
T COG1317 164 VNPDDLEIIRQQLDEELSLLGWR--LELVADPALSPGGCIIETEFGIIDASLDT-QLAALKRAL 224 (234)
T ss_pred ECHHHHHHHHHHHHHHHhhcchh--eeeccCCCCCCCCeEEEecCccccccHHH-HHHHHHHHH
Confidence 3667777777777533210 222 777789998 6999999999999999999 888888765
No 43
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=59.22 E-value=16 Score=32.25 Aligned_cols=40 Identities=15% Similarity=-0.138 Sum_probs=27.2
Q ss_pred HHHHHHHhcCCCeEEEEEEecCCCcCCcEec--cCCcchhhhhhcc
Q psy4192 133 QSTLKLFAKKGENILLTTKVDPSIIGDPKSN--ALTTAPLKLARSF 176 (317)
Q Consensus 133 ~~~l~~~~~~~~~i~l~~~vDpsLIGG~~I~--vg~~viD~svr~~ 176 (317)
...+...+ +..+.+. .+..++|||+|. =|+..+|.|.-++
T Consensus 138 ~~~~~~~l--~~gi~i~--~~~~~~gG~iv~~~dg~i~id~T~ea~ 179 (198)
T PRK01558 138 RAALGNKL--KKGIELK--PFKGISKGFKIQQKDGSLYYDFSAEAI 179 (198)
T ss_pred HHHHHHHh--cCCeEEc--ccCCcccceEEEEcCCCeEEeCcHHHH
Confidence 34455555 3345555 466699999999 7888888777664
No 44
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=55.83 E-value=25 Score=30.26 Aligned_cols=77 Identities=17% Similarity=0.071 Sum_probs=40.1
Q ss_pred cHHHHHHHHHHHHHHHcCCCceEEEeecCCCHHHHHHHHHH---HHHHhcCC-CeEEEEEEecC----CCcCCcEecc--
Q psy4192 95 NIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQST---LKLFAKKG-ENILLTTKVDP----SIIGDPKSNA-- 164 (317)
Q Consensus 95 ~l~~I~~~f~~~~~~~~~~~~v~V~sA~~Ls~~q~~~I~~~---l~~~~~~~-~~i~l~~~vDp----sLIGG~~I~v-- 164 (317)
....++..+........+.-.+.|+. +++....+... +.+.++.+ ++..+....|+ +++|||+|.-
T Consensus 94 ~Y~~~L~~li~~~~~~~~~~~~~v~~----~~~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~il~~~d 169 (198)
T PF01991_consen 94 DYKKFLKKLIEEAAEKLGEGEVIVYV----NKKDLELVKEILKRIKKELKSKAGKDSVEVSVDSDYLIDIIGGFILESED 169 (198)
T ss_dssp THHHHHHHHHHHHHHCCTTSCEEEEE----CCHHHHCCHCCHCCCCCCHCCCSSTTTEEEEE-T---BSSSSEEEEECSS
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEec----ccchHHHHHHHHHHHHHHHHHHhCCCcceeecCccccCCccceEEEEECC
Confidence 34555555555444444444455542 23333333333 22333110 11124455665 9999999985
Q ss_pred CCcchhhhhhc
Q psy4192 165 LTTAPLKLARS 175 (317)
Q Consensus 165 g~~viD~svr~ 175 (317)
|+..+|.|..+
T Consensus 170 g~i~vd~T~e~ 180 (198)
T PF01991_consen 170 GKIRVDNTFES 180 (198)
T ss_dssp SSCEEEEEHHH
T ss_pred CCEEEECCHHH
Confidence 56888988777
No 45
>TIGR01160 SUI1_MOF2 translation initiation factor SUI1, eukaryotic. Alternate name: MOF2. A similar protein family (see TIGRFAMs model TIGR01158) is found in prokaryotes. The human proteins complements a yeast SUI1 mutatation.
Probab=49.77 E-value=50 Score=26.45 Aligned_cols=53 Identities=15% Similarity=0.159 Sum_probs=39.1
Q ss_pred HcCCCceEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEEEEecCCCcCCcEeccCCcch
Q psy4192 110 HRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGDPKSNALTTAP 169 (317)
Q Consensus 110 ~~~~~~v~V~sA~~Ls~~q~~~I~~~l~~~~~~~~~i~l~~~vDpsLIGG~~I~vg~~vi 169 (317)
.++.-.+++++-.+ .+..++.|.+.|++++++|..+. -||+ ||-.|++.|..-
T Consensus 35 R~grK~VTiI~Gl~-~~~dlk~l~K~lKkk~~cGGsVk----~~~~--~~~~IelQGD~r 87 (110)
T TIGR01160 35 RNGRKTLTTVQGLP-KEYDLKKIVKALKKEFACNGTVI----EDPE--MGEVIQLQGDQR 87 (110)
T ss_pred ccCCccEEEEeccC-ChHHHHHHHHHHHHHhCCCceEE----eCCC--CCCEEEEeCcHH
Confidence 44556888888888 68899999999999997776654 4455 556666666443
No 46
>PRK09019 translation initiation factor Sui1; Validated
Probab=49.26 E-value=35 Score=27.21 Aligned_cols=33 Identities=27% Similarity=0.285 Sum_probs=29.9
Q ss_pred ceEEEeecCCCHHHHHHHHHHHHHHhcCCCeEE
Q psy4192 115 PVEVITARPLEEADKSELQSTLKLFAKKGENIL 147 (317)
Q Consensus 115 ~v~V~sA~~Ls~~q~~~I~~~l~~~~~~~~~i~ 147 (317)
.|+|++-.++++..++.|.+.|++++++|..+.
T Consensus 46 ~VTiI~Gl~~~~~dlk~l~K~lKkk~gcGGtvk 78 (108)
T PRK09019 46 GVCLITGLDLDDAELKKLAAELKKKCGCGGAVK 78 (108)
T ss_pred eEEEEeCCcCCHHHHHHHHHHHHHHhcCCCeEE
Confidence 889999999999999999999999997777765
No 47
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=47.11 E-value=42 Score=30.47 Aligned_cols=38 Identities=18% Similarity=0.059 Sum_probs=23.2
Q ss_pred cccHHHHHHHHHHHHHHHcCceeEEEEeeccCCCCCCCC
Q psy4192 277 IKNIDGVINNFSIIMAAHRGDLPVEVITARFWLTGHPSN 315 (317)
Q Consensus 277 ~~~l~~I~~~f~~l~~~~~~~~~~~V~SA~~Ls~~q~~~ 315 (317)
+..+|.-...+........| ..++|+||+|||+++.++
T Consensus 157 l~~l~~~~~~~l~~~~~~~~-~~~~v~sa~~l~~~~~~~ 194 (246)
T TIGR03321 157 LRTLDPDEKAALAEALADSG-NPVLVRSAFELPEEQREQ 194 (246)
T ss_pred hhcCCHHHHHHHHHHHhCCC-CceEEEecCCCCHHHHHH
Confidence 34444444444433333444 559999999999987653
No 48
>COG0023 SUI1 Translation initiation factor 1 (eIF-1/SUI1) and related proteins [Translation, ribosomal structure and biogenesis]
Probab=47.09 E-value=33 Score=27.18 Aligned_cols=36 Identities=25% Similarity=0.306 Sum_probs=30.9
Q ss_pred cCCCceEEEeecCCCHHHHHHHHHHHHHHhcCCCeE
Q psy4192 111 RGDLPVEVITARPLEEADKSELQSTLKLFAKKGENI 146 (317)
Q Consensus 111 ~~~~~v~V~sA~~Ls~~q~~~I~~~l~~~~~~~~~i 146 (317)
++.-.+++++-.++++..+++|.+.|++++++|..+
T Consensus 37 r~gK~VTiI~Gld~~~~dlk~Lak~LKk~cacGGtv 72 (104)
T COG0023 37 RKGKTVTIIEGLDLKDIDLKKLAKELKKKCACGGTV 72 (104)
T ss_pred cCCcEEEEEeCcccchhhHHHHHHHHHHHcCCCcee
Confidence 455678889999999999999999999999777664
No 49
>PRK13386 fliH flagellar assembly protein H; Provisional
Probab=44.50 E-value=2.4e+02 Score=25.48 Aligned_cols=50 Identities=14% Similarity=0.048 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHHHHHHhcCCCeEEEEEEecCCC-cCCcEeccCCcchhhhhhccchh
Q psy4192 124 LEEADKSELQSTLKLFAKKGENILLTTKVDPSI-IGDPKSNALTTAPLKLARSFSTS 179 (317)
Q Consensus 124 Ls~~q~~~I~~~l~~~~~~~~~i~l~~~vDpsL-IGG~~I~vg~~viD~svr~~~~~ 179 (317)
|+++..+.|...+.... -.++...||+| -||++|..++-.+|+|+.+ .+.
T Consensus 169 vnP~D~~~l~~~~~e~~-----~~~~l~~D~~l~~GgC~Iet~~g~iDa~iet-Rl~ 219 (236)
T PRK13386 169 LNPEEFGRLKDLAPEKV-----QAWGLVADPSLSAGECRIVTDTSEADAGCEH-RLD 219 (236)
T ss_pred ECHHHHHHHHHhhhccc-----cCeEEEeCCCcCCCCEEEEeCCceEeeCHHH-HHH
Confidence 57888888887654432 24677799999 6999999999999999888 553
No 50
>PRK06824 translation initiation factor Sui1; Validated
Probab=41.58 E-value=62 Score=26.25 Aligned_cols=36 Identities=39% Similarity=0.478 Sum_probs=31.4
Q ss_pred cCCCceEEEeecCCCHHHHHHHHHHHHHHhcCCCeE
Q psy4192 111 RGDLPVEVITARPLEEADKSELQSTLKLFAKKGENI 146 (317)
Q Consensus 111 ~~~~~v~V~sA~~Ls~~q~~~I~~~l~~~~~~~~~i 146 (317)
++--.+++++-.++++..++.|.+.|++++++|..+
T Consensus 52 r~gK~VTvI~Gl~~~~~dlk~l~K~LKkk~gcGGtv 87 (118)
T PRK06824 52 RGGKTVTVITGVPLAEDALKELAKELKRRCGTGGTL 87 (118)
T ss_pred CCCceEEEEeCCcCCHHHHHHHHHHHHHHhcCCceE
Confidence 456689999999999999999999999999766665
No 51
>PRK07738 flagellar protein FlaG; Provisional
Probab=41.22 E-value=48 Score=26.82 Aligned_cols=55 Identities=7% Similarity=0.115 Sum_probs=43.4
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCCeEEEEEEecCCCcCCcEeccCCcchhhhhhccch
Q psy4192 122 RPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGDPKSNALTTAPLKLARSFST 178 (317)
Q Consensus 122 ~~Ls~~q~~~I~~~l~~~~~~~~~i~l~~~vDpsLIGG~~I~vg~~viD~svr~~~~ 178 (317)
.++++++++...+.+.+.+. ..+-.+++.+|++. |-++|+|=|.-=|-.||.+-.
T Consensus 41 k~~s~eel~~aveklN~~l~-~~~~~L~F~vdeet-~~~vVkVvD~~T~EVIRQIPp 95 (117)
T PRK07738 41 YEVSKEDLEEVVDGMNELLE-PSQTSLKFELHEKL-NEYYVQVVDERTNEVIREIPP 95 (117)
T ss_pred ccCCHHHHHHHHHHHHHHHH-hcCCceEEEEecCC-CcEEEEEEECCCCeeeeeCCC
Confidence 58899999999999998884 56678888899987 999999877655555666443
No 52
>PF12327 FtsZ_C: FtsZ family, C-terminal domain; InterPro: IPR024757 The FtsZ family of proteins are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ is a GTPase, like tubulin []. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea []. This entry represents a domain of FtsZ. In most FtsZ proteins is found in the C terminus, except in some alphaproteobacteria proteins where there is an extension C-terminal domain TIGR03483 from TIGRFAMs.; PDB: 2RHO_B 2RHJ_A 2VXY_A 2RHL_B 2RHH_A 2VAM_A 1W5F_B 2R75_1 2R6R_1 1RQ7_A ....
Probab=40.68 E-value=1.2e+02 Score=23.33 Aligned_cols=53 Identities=13% Similarity=0.184 Sum_probs=40.7
Q ss_pred CCCceEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEEEEecCCCcCCcEecc
Q psy4192 112 GDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGDPKSNA 164 (317)
Q Consensus 112 ~~~~v~V~sA~~Ls~~q~~~I~~~l~~~~~~~~~i~l~~~vDpsLIGG~~I~v 164 (317)
..+-+.|+....++=.+.+.+.+.+.+.+++..++.+=..+||++=+-++|.+
T Consensus 37 ~~vLvni~~~~d~~l~ev~~~~~~i~~~~~~~a~ii~G~~id~~l~d~i~Vti 89 (95)
T PF12327_consen 37 KGVLVNITGGPDLSLSEVNEAMEIIREKADPDANIIWGASIDEELEDEIRVTI 89 (95)
T ss_dssp SEEEEEEEE-TTS-HHHHHHHHHHHHHHSSTTSEEEEEEEE-TTGTTEEEEEE
T ss_pred ceEEEEEEcCCCCCHHHHHHHHHHHHHHhhcCceEEEEEEECCCCCCeEEEEE
Confidence 34567777778899999999999999999767799999999999866566643
No 53
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=34.90 E-value=2.2e+02 Score=22.33 Aligned_cols=44 Identities=11% Similarity=0.286 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhhCCHHHHHhhhCCCCCHHHHHHHHHHHhhcCCCCHH
Q psy4192 215 GVEKELISFQQALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAA 263 (317)
Q Consensus 215 ~v~~~L~~l~~v~~~~~~l~~~L~~p~i~~~~K~~ll~~v~~~~~~~~~ 263 (317)
.+.+-+..+..++ ..|..++.|+..+..++..-|+.+.. ..++.
T Consensus 55 ~~~~vi~~L~~a~---~~l~~I~~n~~lT~~q~~~~I~~l~~--~~~~e 98 (113)
T PF02520_consen 55 NVTAVISNLSSAF---AKLSAILDNKSLTRQQQQEAIDALRK--QYPEE 98 (113)
T ss_pred HHHHHHHHHHHHH---HHHHHHHcCcccCHHHHHHHHHHHHH--HCCHH
Confidence 3445555555554 48899999999999999999999997 56666
No 54
>cd00474 SUI1_eIF1 The SUI1/eIF1 (eukaryotic initiation factor 1) fold is found in eukaryotes, archaea, and some bacteria and is thought to play an important role in accurate initiator codon recognition during translation initiation. This fold, which includes two antiparallel alpha helices packed against the same side of a five-strand beta sheet, is structurally similar to other RNA-binding domains suggesting that SUI1/eIF1 may bind RNA. Point mutations in the yeast eIF1 implicate the protein in maintaining accurate start-site selection but its mechanism of action is unknown.
Probab=34.43 E-value=1e+02 Score=22.84 Aligned_cols=36 Identities=28% Similarity=0.280 Sum_probs=30.6
Q ss_pred CCCceEEEeecCCCHHHHHHHHHHHHHHhcCCCeEE
Q psy4192 112 GDLPVEVITARPLEEADKSELQSTLKLFAKKGENIL 147 (317)
Q Consensus 112 ~~~~v~V~sA~~Ls~~q~~~I~~~l~~~~~~~~~i~ 147 (317)
+.-.+++++..++....++.+.+.|++++++|..+.
T Consensus 11 ~~K~VT~I~Gl~~~~~dlk~l~k~lKk~~~cggtv~ 46 (77)
T cd00474 11 GGKTVTTVQGLDLEYADLKKLAKELKKKCACGGTVK 46 (77)
T ss_pred CCccEEEEECCCCchHhHHHHHHHHHHHcCCCcEEe
Confidence 455789999999999999999999999997666654
No 55
>PF14480 DNA_pol3_a_NI: DNA polymerase III polC-type N-terminus I
Probab=32.51 E-value=1.1e+02 Score=21.90 Aligned_cols=43 Identities=9% Similarity=-0.015 Sum_probs=34.4
Q ss_pred HHHcCCCceEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEEE
Q psy4192 108 AAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTT 150 (317)
Q Consensus 108 ~~~~~~~~v~V~sA~~Ls~~q~~~I~~~l~~~~~~~~~i~l~~ 150 (317)
.+..+.....+.+...|+.+....+.+.|++.+++..++.+..
T Consensus 32 ~k~~~~w~f~l~~~~~l~~~~~~~~~~~l~~~F~~ia~v~~~i 74 (76)
T PF14480_consen 32 HKKSRKWRFHLSSPHILPFEVYQKFEEKLKKQFSHIAKVELII 74 (76)
T ss_pred EccCCEEEEEEEeCCcCCHHHHHHHHHHHHHHhCCcCeEEEEE
Confidence 4456677888999999999999999999999985444666554
No 56
>PRK07451 translation initiation factor Sui1; Validated
Probab=30.99 E-value=94 Score=25.08 Aligned_cols=34 Identities=24% Similarity=0.219 Sum_probs=29.4
Q ss_pred CCceEEEeecCCCHHHHHHHHHHHHHHhcCCCeE
Q psy4192 113 DLPVEVITARPLEEADKSELQSTLKLFAKKGENI 146 (317)
Q Consensus 113 ~~~v~V~sA~~Ls~~q~~~I~~~l~~~~~~~~~i 146 (317)
--.++|+.-.++.+..++.|.+.|++++++|..+
T Consensus 51 GK~VTvV~Gl~~~~~dlk~LaK~LK~k~gcGGtv 84 (115)
T PRK07451 51 GKTVTVITGFQHKPETLAKLLKQLKTQCGSGGTV 84 (115)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCceE
Confidence 3578889999999999999999999999776665
No 57
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=29.85 E-value=1.7e+02 Score=19.28 Aligned_cols=36 Identities=14% Similarity=0.200 Sum_probs=28.2
Q ss_pred HHHHHHHHHhhCCHHHHHhhhCCCCCHHHHHHHHHHH
Q psy4192 218 KELISFQQALKTDVKFRDFVLDPTIQKSLKIEALKIV 254 (317)
Q Consensus 218 ~~L~~l~~v~~~~~~l~~~L~~p~i~~~~K~~ll~~v 254 (317)
+++..+...+.+||+|+.-|.... +.++..++...-
T Consensus 4 ~~l~~Fl~~~~~d~~l~~~l~~~~-~~~e~~~lA~~~ 39 (49)
T PF07862_consen 4 ESLKAFLEKVKSDPELREQLKACQ-NPEEVVALAREA 39 (49)
T ss_pred HHHHHHHHHHhcCHHHHHHHHhcC-CHHHHHHHHHHc
Confidence 456677777889999999999866 788887776653
No 58
>PRK06032 fliH flagellar assembly protein H; Validated
Probab=29.81 E-value=3.8e+02 Score=23.39 Aligned_cols=88 Identities=11% Similarity=0.055 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHcCCCceEEEeecCCCHHHHHHHHHHHH---HHhcCCCeEEEEEEecCC
Q psy4192 79 ASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLK---LFAKKGENILLTTKVDPS 155 (317)
Q Consensus 79 ~~~nfL~vl~e~~r~~~l~~I~~~f~~~~~~~~~~~~v~V~sA~~Ls~~q~~~I~~~l~---~~~~~~~~i~l~~~vDps 155 (317)
.....+.-.++.+....+..++.+-. ....+.-.+.|+.. ++..+.+...+. ... |....+....||+
T Consensus 96 iarkvi~~~l~~~p~a~v~~~v~eal---~~l~~~~~v~I~v~----P~d~~~l~~~l~~~~~~~--~~~~~~~l~~D~~ 166 (199)
T PRK06032 96 VARKIAGAALAAEPLAEITAAVRDCL---RHLVATPHLVVRVN----DALVEAARERLERLARES--GFEGRLVVLADPD 166 (199)
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHH---HHhcCCCcEEEEEC----HHHHHHHHHHHHHHHHhc--CcCccEEEeeCCC
Confidence 44455555555555544444444443 33344334555543 334444544444 334 5566788889999
Q ss_pred C-cCCcEeccCCcchhhhhhc
Q psy4192 156 I-IGDPKSNALTTAPLKLARS 175 (317)
Q Consensus 156 L-IGG~~I~vg~~viD~svr~ 175 (317)
| -||++|+.++-.+|.+..+
T Consensus 167 L~~G~c~vet~~G~vd~d~~~ 187 (199)
T PRK06032 167 MAPGDCRLEWADGGVVRDRAA 187 (199)
T ss_pred CCCCCeEEEeCCCeEecCHHH
Confidence 9 7999999999999976655
No 59
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=29.64 E-value=4e+02 Score=23.64 Aligned_cols=46 Identities=9% Similarity=0.030 Sum_probs=24.6
Q ss_pred CCHHHHHH-HHHHHHHHhcCCCeEEEEEEecCCCcCCcEeccCC--cchhhhhhc
Q psy4192 124 LEEADKSE-LQSTLKLFAKKGENILLTTKVDPSIIGDPKSNALT--TAPLKLARS 175 (317)
Q Consensus 124 Ls~~q~~~-I~~~l~~~~~~~~~i~l~~~vDpsLIGG~~I~vg~--~viD~svr~ 175 (317)
.+++.++. +...+.+.+. .+-+.+... .|||+|...| ..+|.|.-+
T Consensus 139 ~~~~~~~~~~~~~~~~~l~-~~gv~~~~~-----~gG~~v~~~dg~~~vd~t~d~ 187 (207)
T PRK01005 139 VSARAVNELLGKEVTKKLK-EKGVSVGSF-----VGGAQLKVEEKNWVLDLSSQT 187 (207)
T ss_pred CCHHHHHHHHHHHHHHHHH-HcCeEEecc-----CCceEEEecCCeeEEeCcHHH
Confidence 35555544 3344344441 233454432 6999998754 346665554
No 60
>PF07560 DUF1539: Domain of Unknown Function (DUF1539); InterPro: IPR011436 This domain is found in a small number of Chlamydia proteins of unknown function. It occurs together with IPR013044 from INTERPRO.
Probab=28.92 E-value=62 Score=26.56 Aligned_cols=25 Identities=36% Similarity=0.460 Sum_probs=21.0
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHHhh
Q psy4192 232 KFRDFVLDPTIQKSLKIEALKIVGQ 256 (317)
Q Consensus 232 ~l~~~L~~p~i~~~~K~~ll~~v~~ 256 (317)
.+-..|.||.++.++|.+++..+-.
T Consensus 71 ~l~~aL~dp~Is~erK~~~l~yIaS 95 (126)
T PF07560_consen 71 QLIKALQDPTISKERKREALNYIAS 95 (126)
T ss_pred HHHHHhcCCCCChHHHHHHHHHHHH
Confidence 4556777999999999999998764
No 61
>PF08863 YolD: YolD-like protein; InterPro: IPR014962 These proteins are functionally uncharacterised. However it has been predicted that these proteins are functionally equivalent to the UmuD subunit of polymerase V from Gram-negative bacteria [].
Probab=28.79 E-value=1.2e+02 Score=22.47 Aligned_cols=41 Identities=12% Similarity=0.087 Sum_probs=30.6
Q ss_pred ecCCCHHHHHHHHHHHHHHhcCCCeEEEEEEecCCCcCCcEeccCC
Q psy4192 121 ARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGDPKSNALT 166 (317)
Q Consensus 121 A~~Ls~~q~~~I~~~l~~~~~~~~~i~l~~~vDpsLIGG~~I~vg~ 166 (317)
-..||+++++.|...|...+..+..+.+++-- ||....+-|
T Consensus 20 kp~Lde~~leei~~~l~~a~~~~~~v~ity~~-----~g~~~~~~G 60 (92)
T PF08863_consen 20 KPELDEQQLEEINEKLSEAYQENQPVTITYYE-----DGYYQSVTG 60 (92)
T ss_pred CCCCcHHHHHHHHHHHHHHhcCCCEEEEEEEE-----CCeeEEEEE
Confidence 45699999999999999877557788888776 444444444
No 62
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=27.71 E-value=29 Score=30.26 Aligned_cols=23 Identities=13% Similarity=-0.194 Sum_probs=19.9
Q ss_pred cCCCcCCcEec--cCCcchhhhhhc
Q psy4192 153 DPSIIGDPKSN--ALTTAPLKLARS 175 (317)
Q Consensus 153 DpsLIGG~~I~--vg~~viD~svr~ 175 (317)
+++++|||++. -|+-.+|.|..+
T Consensus 142 ~~~~~GGvil~s~dG~I~ld~~l~~ 166 (185)
T PRK01194 142 DIDPYGGILAYSRDGKRELDLRLSS 166 (185)
T ss_pred CccccccEEEEeCCCcEEehhhHHH
Confidence 57899999999 888888888877
No 63
>TIGR01158 SUI1_rel translation initation factor SUI1, putative, prokaryotic. This family of archaeal and bacterial proteins is homologous to the eukaryotic translation intiation factor SUI1 involved in directing the ribosome to the proper start site of translation by functioning in concert with eIF-2 and the initiator tRNA-Met.
Probab=27.62 E-value=1.3e+02 Score=23.64 Aligned_cols=36 Identities=28% Similarity=0.297 Sum_probs=31.3
Q ss_pred cCCCceEEEeecCCCHHHHHHHHHHHHHHhcCCCeE
Q psy4192 111 RGDLPVEVITARPLEEADKSELQSTLKLFAKKGENI 146 (317)
Q Consensus 111 ~~~~~v~V~sA~~Ls~~q~~~I~~~l~~~~~~~~~i 146 (317)
++.-.+++++-.++.+..++.+.+.|++++++|..+
T Consensus 35 r~gK~VTvV~Gl~~~~~~l~~l~k~LKk~~gcGgtv 70 (101)
T TIGR01158 35 RKGKGVTIIEGLDLSDIDLKELAKELKSKCGCGGTV 70 (101)
T ss_pred CCCCEEEEEeCCcCchhhHHHHHHHHHHHhcCCeeE
Confidence 456788999999999999999999999999666666
No 64
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=27.61 E-value=68 Score=25.00 Aligned_cols=55 Identities=16% Similarity=0.178 Sum_probs=36.6
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCCeEEEEEEecCCCcCCcEeccCCcchhhhhhccch
Q psy4192 122 RPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGDPKSNALTTAPLKLARSFST 178 (317)
Q Consensus 122 ~~Ls~~q~~~I~~~l~~~~~~~~~i~l~~~vDpsLIGG~~I~vg~~viD~svr~~~~ 178 (317)
.+.+.+++++..+.|.+.+. ..+..+++.+|+.. |.++|+|=|.-=+-.||.+-.
T Consensus 32 ~~~~~e~l~~~v~~ln~~~~-~~~~~l~F~vde~~-~~~vVkViD~~T~eVIRqIP~ 86 (107)
T PF03646_consen 32 KEPSKEELEEAVEKLNEFLQ-ALNTSLRFSVDEES-GRVVVKVIDKETGEVIRQIPP 86 (107)
T ss_dssp ----HHHHHHHHHHHHHHHT-TSS--EEEEEEEET-TEEEEEEEETTT-SEEEEE-H
T ss_pred ccCCHHHHHHHHHHHHHHHH-hcCCceEEEEecCC-CcEEEEEEECCCCcEEEeCCc
Confidence 57889999999999999884 56778888899874 889998766555555666443
No 65
>PF05823 Gp-FAR-1: Nematode fatty acid retinoid binding protein (Gp-FAR-1); InterPro: IPR008632 Parasitic nematodes produce at least two structurally novel classes of small helix-rich retinol- and fatty-acid-binding proteins that have no counterparts in their plant or animal hosts and thus represent potential targets for new nematicides. Gp-FAR-1 is a member of the nematode-specific fatty-acid- and retinol-binding (FAR) family of proteins but localises to the surface of the organism, placing it in a strategic position for interaction with the host. Gp-FAR-1 functions as a broad-spectrum retinol- and fatty-acid-binding protein, and it is thought that it is involved in the evasion of primary host plant defence systems [].; GO: 0008289 lipid binding; PDB: 2W9Y_A.
Probab=27.14 E-value=62 Score=27.34 Aligned_cols=76 Identities=9% Similarity=0.018 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHcCCCceEEEeecCCCHHHHHHHHHHHHHH
Q psy4192 61 SLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLF 139 (317)
Q Consensus 61 ~~K~~ll~~~~~~~~~~~~~~nfL~vl~e~~r~~~l~~I~~~f~~~~~~~~~~~~v~V~sA~~Ls~~q~~~I~~~l~~~ 139 (317)
+.-...++.-+. ++++....|++=+++.+|. +......--.-......+...-.+.+...|+++.++.|++.+-..
T Consensus 61 ~~l~~~~k~ki~--~L~peak~Fv~~li~~~~~-l~~~~~~G~~~~~~~lk~~~k~~~~~ykaLs~~ak~dL~k~FP~i 136 (154)
T PF05823_consen 61 EKLRDKLKKKID--KLSPEAKAFVKELIAKARS-LYAQYSAGEKPDLEELKQLAKKVIDSYKALSPEAKDDLKKNFPII 136 (154)
T ss_dssp HHHHHHHHHTTT--T--HHHHHHHHHHHHHHHH-HHHHHHHT----THHHHHHH----HHHHTS-HHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHH-HHHHhcCCCCCCHHHHHHHHhhhHHHHHcCCHHHHHHHHHHCccc
Confidence 444555666554 7999999999999887653 222221111111222233334556677889999888888775433
No 66
>PF04918 DltD_M: DltD central region; InterPro: IPR007002 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the central region of DltD.; PDB: 3BMA_C.
Probab=26.71 E-value=97 Score=26.27 Aligned_cols=64 Identities=19% Similarity=0.199 Sum_probs=43.1
Q ss_pred CCHHHHHhhhCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHH
Q psy4192 229 TDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAA 293 (317)
Q Consensus 229 ~~~~l~~~L~~p~i~~~~K~~ll~~v~~~~~~~~~~~nfL~lL~~~~R~~~l~~I~~~f~~l~~~ 293 (317)
+..++-.||.||.++.+.|..+.+.++.- .-+..+.++++-++..+.+.......-.+...+.+
T Consensus 51 S~~q~~~fl~n~~is~~~k~~~AkRlL~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 114 (163)
T PF04918_consen 51 SPLQAYNFLFNPKISDETKRYAAKRLLEL-PSDVTLKNLLKKIAKGKKLSSFDRWYLRLRYRLLE 114 (163)
T ss_dssp -HHHHHHHHHH---SSHHHHHHHHHHHHH--TT-TTHHHHHHHHTT----HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCCcHHHHHHHHHHHhh-cccHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 35678899999999999999999999973 44567888999999998888777776666554333
No 67
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=26.56 E-value=99 Score=23.87 Aligned_cols=28 Identities=18% Similarity=0.081 Sum_probs=21.0
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCeEEEEEE
Q psy4192 123 PLEEADKSELQSTLKLFAKKGENILLTTK 151 (317)
Q Consensus 123 ~Ls~~q~~~I~~~l~~~~~~~~~i~l~~~ 151 (317)
|=|.+.-++|+.+|++||+ +..+.+++.
T Consensus 16 PsSkeTyeWL~aal~RKyp-~~~f~~~Yi 43 (93)
T PF07315_consen 16 PSSKETYEWLEAALKRKYP-DQPFEFTYI 43 (93)
T ss_dssp --HHHHHHHHHHHHHHH-T-TS-EEEEEE
T ss_pred CCchhHHHHHHHHHhCcCC-CCceEEEEE
Confidence 4578999999999999994 888888874
No 68
>PRK00939 translation initiation factor Sui1; Reviewed
Probab=24.27 E-value=1.6e+02 Score=23.02 Aligned_cols=37 Identities=24% Similarity=0.222 Sum_probs=32.1
Q ss_pred HcCCCceEEEeecCCCHHHHHHHHHHHHHHhcCCCeE
Q psy4192 110 HRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENI 146 (317)
Q Consensus 110 ~~~~~~v~V~sA~~Ls~~q~~~I~~~l~~~~~~~~~i 146 (317)
.++.-.+++++..++.+..++.+.+.|++.++.|..+
T Consensus 33 r~~gK~VTiI~Gl~~~~~~lk~l~k~lKk~~gcGgsv 69 (99)
T PRK00939 33 RRYGKEVTIIEGIDPKDIDLKELAKKLKSKLACGGTV 69 (99)
T ss_pred cCCCceEEEEeCCCCcchhHHHHHHHHHHHhCCCceE
Confidence 3566789999999999999999999999999767676
No 69
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=24.25 E-value=2.9e+02 Score=21.60 Aligned_cols=42 Identities=17% Similarity=0.146 Sum_probs=34.8
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q psy4192 231 VKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLA 272 (317)
Q Consensus 231 ~~l~~~L~~p~i~~~~K~~ll~~v~~~~~~~~~~~nfL~lL~ 272 (317)
.+|..++.||.++..++..-+.....+-|+...+..|..-+.
T Consensus 5 ~ef~~I~~n~~lt~~e~~~~l~~Wa~~~~v~~~~~~f~~~~~ 46 (113)
T PF02520_consen 5 KEFFQIFQNPNLTKAEIEEQLDEWAEKYGVQDQYNEFKAQVQ 46 (113)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHHCCcHHHHHHHHHHHH
Confidence 578889999999999999999998876678787777777554
No 70
>cd02685 MIT_C MIT_C; domain found C-terminal to MIT (contained within Microtubule Interacting and Trafficking molecules) domains, as well as in some bacterial proteins. The function of this domain is unknown.
Probab=22.58 E-value=4.6e+02 Score=22.13 Aligned_cols=73 Identities=11% Similarity=-0.001 Sum_probs=39.3
Q ss_pred cCCCceEEEeecCCC--HHHHHHHHHHHHHHhcCCCeEEEEEEecCCC-------cCCcEeccCCcchh---hhhhccch
Q psy4192 111 RGDLPVEVITARPLE--EADKSELQSTLKLFAKKGENILLTTKVDPSI-------IGDPKSNALTTAPL---KLARSFST 178 (317)
Q Consensus 111 ~~~~~v~V~sA~~Ls--~~q~~~I~~~l~~~~~~~~~i~l~~~vDpsL-------IGG~~I~vg~~viD---~svr~~~~ 178 (317)
.....++++|...-. ++|.+.+.+.=+... ...|.+...-|++| =-|.+|++|= -+| .+...|+.
T Consensus 50 ~~~~~i~LvT~~d~~~~~~Q~~~l~~i~~sl~--~~gI~~~~~f~~tiHDR~I~~~nGw~IkigR-GLD~fq~~~~~fsi 126 (148)
T cd02685 50 CELKYIHLVTGEDEDNGKQQIEALEEIKQSLA--SHGVEFTWEFSDTIHDREIRTDNGWIIKIGR-GLDYFKPPEGKFSL 126 (148)
T ss_pred cceEEEEEEecCCCCCHHHHHHHHHHHHHHHH--hCCcEEEEEECCCccceEEEecCCeEEEECC-cccceeCCCCccch
Confidence 345677787766533 333333332222222 44588888888875 4677777762 223 34445665
Q ss_pred hhhhhhhh
Q psy4192 179 SQISQQLV 186 (317)
Q Consensus 179 ~~~~~~~~ 186 (317)
+.--+.++
T Consensus 127 g~~d~~~R 134 (148)
T cd02685 127 GNRDQDFR 134 (148)
T ss_pred hhcchhcc
Confidence 54444443
No 71
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.28 E-value=1.1e+02 Score=23.78 Aligned_cols=29 Identities=17% Similarity=0.066 Sum_probs=24.4
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCCeEEEEEE
Q psy4192 122 RPLEEADKSELQSTLKLFAKKGENILLTTK 151 (317)
Q Consensus 122 ~~Ls~~q~~~I~~~l~~~~~~~~~i~l~~~ 151 (317)
-|-+++.-++|+.+++++|+ +..+++++.
T Consensus 22 aPtsKdt~eWLeaalkRKyp-~~~F~~~Yi 50 (106)
T COG4837 22 APTSKDTYEWLEAALKRKYP-NQPFKYTYI 50 (106)
T ss_pred CCcchhHHHHHHHHHhccCC-CCCcEEEEE
Confidence 36689999999999999994 888887763
No 72
>TIGR01609 PF_unchar_267 Plasmodium falciparum uncharacterized protein TIGR01609. This model represents a family of at least four proteins in Plasmodium falciparum. An interesting feature is five perfectly conserved Trp residues.
Probab=20.97 E-value=3.1e+02 Score=23.09 Aligned_cols=40 Identities=18% Similarity=0.011 Sum_probs=32.7
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q psy4192 232 KFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAE 273 (317)
Q Consensus 232 ~l~~~L~~p~i~~~~K~~ll~~v~~~~~~~~~~~nfL~lL~~ 273 (317)
.+...|.||..|...|..++...+. -..+.+.-||.++-+
T Consensus 103 ~IN~~Lnd~~~sl~dKE~ii~~~l~--w~~~Df~~FL~~Vke 142 (146)
T TIGR01609 103 HINSDLNDPSLTLVDKEYIVNIWIT--WTREDFEFFLEYLKE 142 (146)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 4567899999999999999999986 456788888887643
Done!