Query psy4192
Match_columns 317
No_of_seqs 225 out of 2127
Neff 7.4
Searched_HMMs 29240
Date Fri Aug 16 19:12:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4192.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4192hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wss_S ATP synthase subunit O, 100.0 7.2E-38 2.5E-42 274.0 -2.8 169 19-188 3-189 (190)
2 1abv_A Delta subunit of the F1 99.9 7.9E-26 2.7E-30 186.6 13.0 122 192-316 3-124 (134)
3 2wss_S ATP synthase subunit O, 99.9 2.4E-27 8.3E-32 207.2 2.3 132 184-316 3-134 (190)
4 1abv_A Delta subunit of the F1 99.9 1.3E-22 4.4E-27 167.3 12.0 114 26-140 2-132 (134)
5 2dm9_A V-type ATP synthase sub 90.2 0.36 1.2E-05 40.6 5.2 62 121-186 126-189 (198)
6 3v6i_A V-type ATP synthase sub 71.1 43 0.0015 27.6 13.3 52 125-184 123-176 (187)
7 3lg8_A A-type ATP synthase sub 55.6 3.4 0.00012 31.5 0.9 54 129-185 42-97 (106)
8 2xzm_F EIF1; ribosome, transla 48.2 17 0.0006 27.4 3.8 53 111-170 27-79 (101)
9 4efa_E V-type proton ATPase su 44.7 83 0.0029 26.9 8.2 61 112-175 133-205 (233)
10 2hc5_A ORF 99, hypothetical pr 35.4 27 0.00092 27.1 3.1 56 121-178 32-87 (117)
11 2ogh_A Eukaryotic translation 33.5 52 0.0018 25.0 4.4 53 111-170 34-86 (108)
12 2if1_A EIF1, SUI1; translation 32.3 27 0.00094 27.4 2.7 53 111-170 52-104 (126)
13 1l6x_B Minimized B-domain of p 23.1 1.1E+02 0.0038 18.2 3.5 24 232-255 8-31 (34)
14 1xg8_A Hypothetical protein SA 21.6 89 0.0031 23.7 3.6 28 123-151 26-53 (111)
15 3gx8_A Monothiol glutaredoxin- 21.6 65 0.0022 24.5 3.1 100 76-190 1-109 (121)
16 3tuf_A Stage III sporulation p 21.1 77 0.0026 26.8 3.6 31 121-151 164-194 (197)
17 2npb_A Selenoprotein W; struct 20.9 82 0.0028 23.3 3.4 40 128-169 18-57 (96)
18 1d1r_A Hypothetical 11.4 KD pr 20.9 73 0.0025 24.6 3.2 33 114-146 45-77 (116)
No 1
>2wss_S ATP synthase subunit O, mitochondrial; hydrogen ION transport, ATP synthesis, phosphoprotein, UBL conjugation, transit peptide; HET: ANP ADP; 3.20A {Bos taurus} PDB: 2bo5_A 2jmx_A
Probab=100.00 E-value=7.2e-38 Score=274.01 Aligned_cols=169 Identities=41% Similarity=0.640 Sum_probs=137.4
Q ss_pred cccCCCchhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH------------------HHHHHHHHHHhccCCCCHHH
Q psy4192 19 QLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISFQK------------------SLKIEALKIVGQKKNFSAAS 80 (317)
Q Consensus 19 ~~~~~~~~~~~va~~YA~AL~~~a~e~~~~~~v~~~l~~l~~------------------~~K~~ll~~~~~~~~~~~~~ 80 (317)
+.++||.+.++|++|||+|||++|.+.+.++.|+++|..+.. ++|.+++..+|++.++++.+
T Consensus 3 ~~~~~~~~~~~ia~rYA~AL~~~A~e~~~l~~v~~~L~~l~~~~~~~~l~~~l~~P~i~~~~K~~~l~~~~~~~~~~~~~ 82 (190)
T 2wss_S 3 KLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVGQILKEPKMAASLLNPYVKRSVKVKSLSDMTAKEKFSPLT 82 (190)
T ss_dssp CCCCCTTCCCSSSCTTHHHHHHHTTTTTCHHHHHHHHHHHHHHSSSTTSHHHHTCTTTTTSTTTTTTTHHHHTTTCCSSS
T ss_pred cccCCchHhhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHCCHHHHHHHhCCCCCHHHHHHHHHHHHcccCCCHHH
Confidence 357999999999999999999999999999999999999987 78999999999843699999
Q ss_pred HHHHHHHHHcCCcccHHHHHHHHHHHHHHHcCCCceEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEEEEecCCCcCCc
Q psy4192 81 INLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGDP 160 (317)
Q Consensus 81 ~nfL~vl~e~~r~~~l~~I~~~f~~~~~~~~~~~~v~V~sA~~Ls~~q~~~I~~~l~~~~~~~~~i~l~~~vDpsLIGG~ 160 (317)
.|||++|++|+|+.++++|+.+|.+++++++|+..|+|+||.|||++|+++|.+.|++++|+|+++.++++|||+||||+
T Consensus 83 ~nfl~ll~~~~R~~~l~~I~~~f~~l~~~~~~~~~a~V~sA~~Ls~~q~~~l~~~L~~~~g~~~~v~l~~~vDpsLiGG~ 162 (190)
T 2wss_S 83 SNLINLLAENGRLTNTPAVISAFSTMMSVHRGEVPCTVTTASALDETTLTELKTVLKSFLSKGQVLKLEVKIDPSIMGGM 162 (190)
T ss_dssp SHHHHHHHHTTCGGGHHHHHHHHHHHHTTTSCCCCBCSSSCBCCCCSSSTTTTTTTTSSTTTCC----------------
T ss_pred HHHHHHHHhCCcHhhHHHHHHHHHHHHHHHcCeeEEEEEECCCCCHHHHHHHHHHHHHHHCCCCeEEEEEEEChhHhCeE
Confidence 99999999999999999999999999999999999999999999999999999999999932479999999999999999
Q ss_pred EeccCCcchhhhhhccchhhhhhhhhcc
Q psy4192 161 KSNALTTAPLKLARSFSTSQISQQLVKA 188 (317)
Q Consensus 161 ~I~vg~~viD~svr~~~~~~~~~~~~~~ 188 (317)
+|++||++||+|+++ .+.++++.|.+|
T Consensus 163 ~v~vgd~viD~Sv~~-~L~~l~~~L~~~ 189 (190)
T 2wss_S 163 IVRIGEKYVDMSAKT-KIQKLSRAMREI 189 (190)
T ss_dssp ------CCTTTTTTT-TTTTTCTTTTTC
T ss_pred EEEECCEEEehhHHH-HHHHHHHHHhhc
Confidence 999999999999999 899999988665
No 2
>1abv_A Delta subunit of the F1F0-ATP synthase; ATP synthesis, F1-ATPase, spectroscopy; NMR {Escherichia coli} SCOP: a.70.1.1 PDB: 2a7u_B
Probab=99.93 E-value=7.9e-26 Score=186.63 Aligned_cols=122 Identities=16% Similarity=0.302 Sum_probs=96.7
Q ss_pred cccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhCCHHHHHhhhCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q psy4192 192 VFGTDGRYATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALL 271 (317)
Q Consensus 192 ~~~ia~~YA~AL~~~A~e~~~l~~v~~~L~~l~~v~~~~~~l~~~L~~p~i~~~~K~~ll~~v~~~~~~~~~~~nfL~lL 271 (317)
.++||+|||+|||++|.++|.+++|. ++..+...+.++|+|+.+|. |.++.++|.+++..+|++ ++++.+.|||++|
T Consensus 3 ~~~ia~rYA~AL~~~A~e~~~l~~~~-e~~~~~~~~~~~~~l~~~l~-P~i~~~~K~~~l~~~~~~-~~~~~~~nfl~ll 79 (134)
T 1abv_A 3 FITVARPYAKAAFDFAVEHQSVERWQ-DMLAFAAEVTKNEQMAELLS-GALAPETLAESFIAVCGE-QLDENGQNLIRVM 79 (134)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHTSHHHHHHHT-CSSCHHHHHHHHHHHHCS-CCCHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHhcCCHHHHH-HHHHHHHHHhcCHHHHHHHC-ccCCHHHHHHHHHHHHhc-cCCHHHHHHHHHH
Confidence 46899999999999999999999996 66666677788999999999 999999999999999984 8999999999999
Q ss_pred HHcCCcccHHHHHHHHHHHHHHHcCceeEEEEeeccCCCCCCCCC
Q psy4192 272 AENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARFWLTGHPSNS 316 (317)
Q Consensus 272 ~~~~R~~~l~~I~~~f~~l~~~~~~~~~~~V~SA~~Ls~~q~~~~ 316 (317)
++|+|+..|++|+..|..++++++|++.|+||||+|||++|++..
T Consensus 80 ~~~~Rl~~l~~I~~~f~~l~~~~~~~~~a~V~SA~~Ls~~q~~~l 124 (134)
T 1abv_A 80 AENGRLNALPDVLEQFIHLRAVSEATAEVDVISAAALSEQQLAKI 124 (134)
T ss_dssp HHTTCGGGHHHHHHHHHHHHHHHHHC-------------------
T ss_pred HHCCcHHHHHHHHHHHHHHHHHHCCeeEEEEEecCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999998753
No 3
>2wss_S ATP synthase subunit O, mitochondrial; hydrogen ION transport, ATP synthesis, phosphoprotein, UBL conjugation, transit peptide; HET: ANP ADP; 3.20A {Bos taurus} PDB: 2bo5_A 2jmx_A
Probab=99.93 E-value=2.4e-27 Score=207.16 Aligned_cols=132 Identities=43% Similarity=0.685 Sum_probs=126.9
Q ss_pred hhhccCcccccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhCCHHHHHhhhCCCCCHHHHHHHHHHHhhcCCCCHH
Q psy4192 184 QLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAA 263 (317)
Q Consensus 184 ~~~~~~~~~~~ia~~YA~AL~~~A~e~~~l~~v~~~L~~l~~v~~~~~~l~~~L~~p~i~~~~K~~ll~~v~~~~~~~~~ 263 (317)
..++||++.++||+|||+|||++|.+++.+++|.++|..+..++. +|+|+.+|.||.++.++|.+++.++|++.++++.
T Consensus 3 ~~~~~~~~~~~ia~rYA~AL~~~A~e~~~l~~v~~~L~~l~~~~~-~~~l~~~l~~P~i~~~~K~~~l~~~~~~~~~~~~ 81 (190)
T 2wss_S 3 KLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVGQILK-EPKMAASLLNPYVKRSVKVKSLSDMTAKEKFSPL 81 (190)
T ss_dssp CCCCCTTCCCSSSCTTHHHHHHHTTTTTCHHHHHHHHHHHHHHSS-STTSHHHHTCTTTTTSTTTTTTTHHHHTTTCCSS
T ss_pred cccCCchHhhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHC-CHHHHHHHhCCCCCHHHHHHHHHHHHcccCCCHH
Confidence 368999999999999999999999999999999999999999999 9999999999999999999999999984468999
Q ss_pred HHHHHHHHHHcCCcccHHHHHHHHHHHHHHHcCceeEEEEeeccCCCCCCCCC
Q psy4192 264 SINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARFWLTGHPSNS 316 (317)
Q Consensus 264 ~~nfL~lL~~~~R~~~l~~I~~~f~~l~~~~~~~~~~~V~SA~~Ls~~q~~~~ 316 (317)
+.|||++|++|+|+..+++|+++|..++++++|++.|+|+||+|||++|.+..
T Consensus 82 ~~nfl~ll~~~~R~~~l~~I~~~f~~l~~~~~~~~~a~V~sA~~Ls~~q~~~l 134 (190)
T 2wss_S 82 TSNLINLLAENGRLTNTPAVISAFSTMMSVHRGEVPCTVTTASALDETTLTEL 134 (190)
T ss_dssp SSHHHHHHHHTTCGGGHHHHHHHHHHHHTTTSCCCCBCSSSCBCCCCSSSTTT
T ss_pred HHHHHHHHHhCCcHhhHHHHHHHHHHHHHHHcCeeEEEEEECCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998764
No 4
>1abv_A Delta subunit of the F1F0-ATP synthase; ATP synthesis, F1-ATPase, spectroscopy; NMR {Escherichia coli} SCOP: a.70.1.1 PDB: 2a7u_B
Probab=99.88 E-value=1.3e-22 Score=167.31 Aligned_cols=114 Identities=19% Similarity=0.298 Sum_probs=78.3
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----------------HHHHHHHHHHhccCCCCHHHHHHHHHHH
Q psy4192 26 QVFGTDGRYATALYSAATKLKQLDGVEKELISFQK-----------------SLKIEALKIVGQKKNFSAASINLLALLA 88 (317)
Q Consensus 26 ~~~~va~~YA~AL~~~a~e~~~~~~v~~~l~~l~~-----------------~~K~~ll~~~~~~~~~~~~~~nfL~vl~ 88 (317)
...+|++|||+|||++|.+.|.++.|.+.+..+.. ++|.+++..+|+ +++++.+.|||++|+
T Consensus 2 ~~~~ia~rYA~AL~~~A~e~~~l~~~~e~~~~~~~~~~~~~l~~~l~P~i~~~~K~~~l~~~~~-~~~~~~~~nfl~ll~ 80 (134)
T 1abv_A 2 EFITVARPYAKAAFDFAVEHQSVERWQDMLAFAAEVTKNEQMAELLSGALAPETLAESFIAVCG-EQLDENGQNLIRVMA 80 (134)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSHHHHHHHTCSSCHHHHHHHHHHHHC-SCCCHHHHHHHHHHH
T ss_pred chhhhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCHHHHHHHCccCCHHHHHHHHHHHHh-ccCCHHHHHHHHHHH
Confidence 35789999999999999999999999754433322 889999999997 589999999999999
Q ss_pred HcCCcccHHHHHHHHHHHHHHHcCCCceEEEeecCCCHHHHHHHHHHHHHHh
Q psy4192 89 ENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFA 140 (317)
Q Consensus 89 e~~r~~~l~~I~~~f~~~~~~~~~~~~v~V~sA~~Ls~~q~~~I~~~l~~~~ 140 (317)
+|||+.++++|+..|..++++++|++.|+|+||.|||++|+++|.+.|++++
T Consensus 81 ~~~Rl~~l~~I~~~f~~l~~~~~~~~~a~V~SA~~Ls~~q~~~l~~~L~~~~ 132 (134)
T 1abv_A 81 ENGRLNALPDVLEQFIHLRAVSEATAEVDVISAAALSEQQLAKISAAMEKRL 132 (134)
T ss_dssp HTTCGGGHHHHHHHHHHHHHHHHHC---------------------------
T ss_pred HCCcHHHHHHHHHHHHHHHHHHCCeeEEEEEecCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999998
No 5
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A
Probab=90.22 E-value=0.36 Score=40.58 Aligned_cols=62 Identities=6% Similarity=-0.102 Sum_probs=40.3
Q ss_pred ecCCCHHHHHHHHHHHHHHhcCCCeEEEEEEecCCCcCCcEecc--CCcchhhhhhccchhhhhhhhh
Q psy4192 121 ARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGDPKSNA--LTTAPLKLARSFSTSQISQQLV 186 (317)
Q Consensus 121 A~~Ls~~q~~~I~~~l~~~~~~~~~i~l~~~vDpsLIGG~~I~v--g~~viD~svr~~~~~~~~~~~~ 186 (317)
..|-+.+..+.+...+.+.|+ +..+.+ .-++...||++|.. |+..+|.|+.+ .+..+.+.+.
T Consensus 126 v~~~D~~~v~~~~~~~~~~~~-~~~l~i--~~~~~~~GG~~i~~~~G~i~id~tl~~-rl~~~~~~l~ 189 (198)
T 2dm9_A 126 SNEKTLGLIASRIEEIKSELG-DVSIEL--GETVDTMGGVIVETEDGRIRIDNTFEA-RMERFEGEIR 189 (198)
T ss_dssp CCHHHHHHHHHTHHHHHHHCT-TCEEEE--CCCCCCSSEEEEEETTSSCEEEEEHHH-HHHHTHHHHH
T ss_pred ECHhHHHHHHHHHHHHHHHhc-CceEEE--CCCCCccCceEEEeCCCCEEEECcHHH-HHHHHHHHhH
Confidence 334344555555556666663 334444 22567889999988 67799999999 6666666553
No 6
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=71.08 E-value=43 Score=27.65 Aligned_cols=52 Identities=10% Similarity=0.074 Sum_probs=32.9
Q ss_pred CHHHHHHHHHHHHHHhcCCCeEEEEEEecCCCcCCcEeccC--Ccchhhhhhccchhhhhhh
Q psy4192 125 EEADKSELQSTLKLFAKKGENILLTTKVDPSIIGDPKSNAL--TTAPLKLARSFSTSQISQQ 184 (317)
Q Consensus 125 s~~q~~~I~~~l~~~~~~~~~i~l~~~vDpsLIGG~~I~vg--~~viD~svr~~~~~~~~~~ 184 (317)
+++....+...+.. + |-+ ...++++.|||++... .-.+|.|.-+ -+..+.++
T Consensus 123 ~~~D~~~v~~~~~~-~--~~~----~~~~~~~~GGvil~~~dG~I~vdnTle~-rL~~~~~~ 176 (187)
T 3v6i_A 123 NPEDLPHLEALARE-R--GVE----LQAEPALRLGVRAVGAEGKTQVENSLLA-RLDRAWDA 176 (187)
T ss_dssp CTTTHHHHHHHHHH-H--TCE----EEECTTCCSEEEEECTTSSCEEEEEHHH-HHHHHHHH
T ss_pred CHHHHHHHHHHHHh-c--Cee----eCCCCcccCceEEEeCCCCEEEECCHHH-HHHHHHHH
Confidence 33455555555554 3 332 3468999999999973 3588988877 44444443
No 7
>3lg8_A A-type ATP synthase subunit E; archaea, peripheral stalk, hydrolase, structural protein, TR protein; 4.10A {Methanocaldococcus jannaschii}
Probab=55.60 E-value=3.4 Score=31.52 Aligned_cols=54 Identities=7% Similarity=-0.084 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEEecCCCcCCcEecc--CCcchhhhhhccchhhhhhhh
Q psy4192 129 KSELQSTLKLFAKKGENILLTTKVDPSIIGDPKSNA--LTTAPLKLARSFSTSQISQQL 185 (317)
Q Consensus 129 ~~~I~~~l~~~~~~~~~i~l~~~vDpsLIGG~~I~v--g~~viD~svr~~~~~~~~~~~ 185 (317)
+..+.+.++.+. |+.+.++.-...+.+||+++.. |.-.+|.|..+ -+..+++++
T Consensus 42 l~~~~~e~~~~~--g~~~~v~~~~~~~~~GGvil~s~dg~I~vdNTle~-rL~~l~~~~ 97 (106)
T 3lg8_A 42 LWNLEKEVENAT--KKVTVLKKGEPVDIAGGCIIETADGLKSLDNSLEA-IFNRNLNVI 97 (106)
T ss_dssp CTTTTTTHHHHS--SSCCCCCCCCCCSSSCBCBCSSCSCBCCCCSHHHH-SHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCeEEEEeCCCccccccEEEEeCCCCEEEECCHHH-HHHHHHHHH
Confidence 444555667777 6666554322367899999987 66678888877 555555554
No 8
>2xzm_F EIF1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_F
Probab=48.21 E-value=17 Score=27.40 Aligned_cols=53 Identities=15% Similarity=0.129 Sum_probs=40.2
Q ss_pred cCCCceEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEEEEecCCCcCCcEeccCCcchh
Q psy4192 111 RGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGDPKSNALTTAPL 170 (317)
Q Consensus 111 ~~~~~v~V~sA~~Ls~~q~~~I~~~l~~~~~~~~~i~l~~~vDpsLIGG~~I~vg~~viD 170 (317)
++.-.+++++-.+ .+..++.|.+.|++++++|..|. -+|+ ||-.|.+.|..-|
T Consensus 27 ~g~K~VT~V~Gl~-~~~dlk~laK~lKkk~acggsV~----~~~~--~g~~I~iQGD~r~ 79 (101)
T 2xzm_F 27 RGRKCFTTVEGIP-PEFDYEKIMKYWKKWLSCNATIV----EEDE--GKKVIKLNGDHRN 79 (101)
T ss_dssp ETTEEEEEEECCC-TTSCTHHHHHHHHHHHTSCCCEE----ECST--TCEEEEEESCCHH
T ss_pred cCCccEEEEecCC-CchhHHHHHHHHHHHhcCCeEEe----cCCC--CceEEEEeCcHHH
Confidence 4556778888888 88899999999999997666653 3465 7888888765444
No 9
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=44.72 E-value=83 Score=26.85 Aligned_cols=61 Identities=8% Similarity=-0.087 Sum_probs=32.9
Q ss_pred CCCceEEEeecCCCHH----HHHHHHHHHHHHhcCCCeEEEEEEec------CCCcCCcEeccCC--cchhhhhhc
Q psy4192 112 GDLPVEVITARPLEEA----DKSELQSTLKLFAKKGENILLTTKVD------PSIIGDPKSNALT--TAPLKLARS 175 (317)
Q Consensus 112 ~~~~v~V~sA~~Ls~~----q~~~I~~~l~~~~~~~~~i~l~~~vD------psLIGG~~I~vg~--~viD~svr~ 175 (317)
+.-.+.|.. .+=+.+ .+..+...+..+. ++.......++ ++.+||++|..+| -++|.|.-+
T Consensus 133 ~e~~v~V~~-~~~D~~lv~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~GGvil~s~dGkI~vdNTle~ 205 (233)
T 4efa_E 133 LEPKAIVKA-LERDVDLIESMKDDIMREYGEKA--QRAPLEEIVISNDYLNKDLVSGGVVVSNASDKIEINNTLEE 205 (233)
T ss_dssp CCSEEEEEE-CTTTHHHHTTSHHHHHHHHHHHT--TTSCCCEEEECSSCCCTTTCSSEEEEECTTSCCEEEEEHHH
T ss_pred CCCcEEEEe-cHhhHHHHHHHHHHHHHHHHHHh--CCCCccccccccccCCcccccCceEEEECCCCEEEECCHHH
Confidence 444455543 333433 3344555555555 44333333333 4578999998643 567776655
No 10
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=35.44 E-value=27 Score=27.09 Aligned_cols=56 Identities=5% Similarity=0.154 Sum_probs=43.5
Q ss_pred ecCCCHHHHHHHHHHHHHHhcCCCeEEEEEEecCCCcCCcEeccCCcchhhhhhccch
Q psy4192 121 ARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGDPKSNALTTAPLKLARSFST 178 (317)
Q Consensus 121 A~~Ls~~q~~~I~~~l~~~~~~~~~i~l~~~vDpsLIGG~~I~vg~~viD~svr~~~~ 178 (317)
..+++.+++++..+.|.+.+. ..+..+++.+|++. |.++|+|=|.-=+-.||.+-.
T Consensus 32 ~~~~~~eel~~av~~lN~~~~-~~n~~L~F~vdee~-~~~vVkVvD~~TgEVIRqIPp 87 (117)
T 2hc5_A 32 VHQVSYTNLAEMVGEMNKLLE-PSQVHLKFELHDKL-NEYYVKVIEDSTNEVIREIPP 87 (117)
T ss_dssp CCCCCHHHHHHHHHHHHHHHT-TSSCCEEEEEEEET-TEEEEEEEETTTTEEEEEECH
T ss_pred cccCCHHHHHHHHHHHHHHHH-hcCCceEEEEecCC-CcEEEEEEECCCCcEEEeCCh
Confidence 567899999999999999884 55667888899885 899999877665556666544
No 11
>2ogh_A Eukaryotic translation initiation factor EIF-1; alpha-beta protein; NMR {Saccharomyces cerevisiae}
Probab=33.54 E-value=52 Score=24.99 Aligned_cols=53 Identities=21% Similarity=0.159 Sum_probs=38.7
Q ss_pred cCCCceEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEEEEecCCCcCCcEeccCCcchh
Q psy4192 111 RGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGDPKSNALTTAPL 170 (317)
Q Consensus 111 ~~~~~v~V~sA~~Ls~~q~~~I~~~l~~~~~~~~~i~l~~~vDpsLIGG~~I~vg~~viD 170 (317)
+|.-.+++++-.+ ++..++.|.+.|++++++|..+ . -+|+ +|-.|++.|..-|
T Consensus 34 ~g~K~VT~V~Gl~-~~~dlk~lak~lKkk~acggsV--~--~~~~--~g~~I~iQGD~r~ 86 (108)
T 2ogh_A 34 NGRKTLTTVQGVP-EEYDLKRILKVLKKDFACNGNI--V--KDPE--MGEIIQLQGDQRA 86 (108)
T ss_dssp SSSCCEEEEECCC-TTSCHHHHHHHHHHHHCCCEEE--E--CCTT--SSCEEEEESSCHH
T ss_pred cCCceEEEEeCCC-cchhHHHHHHHHHHHhcCceEE--e--cCCC--CceEEEEcCCHHH
Confidence 4567788888887 4778999999999999544443 3 4566 5788888765544
No 12
>2if1_A EIF1, SUI1; translation initiation factor; NMR {Homo sapiens} SCOP: d.64.1.1
Probab=32.27 E-value=27 Score=27.45 Aligned_cols=53 Identities=11% Similarity=0.038 Sum_probs=38.5
Q ss_pred cCCCceEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEEEEecCCCcCCcEeccCCcchh
Q psy4192 111 RGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGDPKSNALTTAPL 170 (317)
Q Consensus 111 ~~~~~v~V~sA~~Ls~~q~~~I~~~l~~~~~~~~~i~l~~~vDpsLIGG~~I~vg~~viD 170 (317)
+|.-.+++++-.+. +..+++|.+.|++++++|..| . -+|+ +|-.|++.|..-|
T Consensus 52 ~grK~VT~V~GL~~-~~dlk~laK~LKkk~acgGtV--k--~~~e--~g~~I~IQGD~r~ 104 (126)
T 2if1_A 52 NGRKTLTTVQGIAD-DYDKKKLVKAFKKKFACNGTV--I--EHPE--YGEVIQLQGDQRK 104 (126)
T ss_dssp SSSCCBCEEBSCCT-TSCHHHHHTTHHHHTCCCEEE--E--CCTT--TSSEEEESBCCHH
T ss_pred cCCccEEEEeCCCC-chhHHHHHHHHHHHhcCCeEE--e--cCCC--CccEEEEcCCHHH
Confidence 55667888888886 778999999999999555443 2 3465 6777777775544
No 13
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=23.07 E-value=1.1e+02 Score=18.17 Aligned_cols=24 Identities=17% Similarity=0.419 Sum_probs=20.4
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHHh
Q psy4192 232 KFRDFVLDPTIQKSLKIEALKIVG 255 (317)
Q Consensus 232 ~l~~~L~~p~i~~~~K~~ll~~v~ 255 (317)
.|-++|..|.++.++|...|..+-
T Consensus 8 aFYevLh~~nLtEeQrn~yI~slk 31 (34)
T 1l6x_B 8 RFYEALHDPNLNEEQRNAKIKSIR 31 (34)
T ss_dssp HHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHhHHHHHh
Confidence 566778899999999999998864
No 14
>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} SCOP: c.47.1.17
Probab=21.62 E-value=89 Score=23.74 Aligned_cols=28 Identities=21% Similarity=-0.016 Sum_probs=24.1
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCeEEEEEE
Q psy4192 123 PLEEADKSELQSTLKLFAKKGENILLTTK 151 (317)
Q Consensus 123 ~Ls~~q~~~I~~~l~~~~~~~~~i~l~~~ 151 (317)
|=|.+.-++|..+|++|| |+..+.+++.
T Consensus 26 PSSkeTyEWLqAal~RKy-p~~~f~~~YI 53 (111)
T 1xg8_A 26 PTSKDIYDWLQPLLKRKY-PNISFKYTYI 53 (111)
T ss_dssp CCHHHHHHHHHHHHHHHC-TTSCEEEEEE
T ss_pred CCchhHHHHHHHHHhCcC-CCCceEEEEE
Confidence 457999999999999999 4888888874
No 15
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=21.58 E-value=65 Score=24.49 Aligned_cols=100 Identities=15% Similarity=0.112 Sum_probs=55.3
Q ss_pred CCHHHHHHHHHHHHcCCcccHHH---------HHHHHHHHHHHHcCCCceEEEeecCCCHHHHHHHHHHHHHHhcCCCeE
Q psy4192 76 FSAASINLLALLAENGKIKNIDG---------VINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENI 146 (317)
Q Consensus 76 ~~~~~~nfL~vl~e~~r~~~l~~---------I~~~f~~~~~~~~~~~~v~V~sA~~Ls~~q~~~I~~~l~~~~~~~~~i 146 (317)
+++.+..+++-++..+++-++.. -+..-.+++++. |+-.- .+.-..++++ ..+.+.|..+. |..-
T Consensus 1 ~~~~~~~~v~~~i~~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~-gv~~~-~~~~~dv~~~--~~~~~~l~~~s--g~~t 74 (121)
T 3gx8_A 1 LSTEIRKAIEDAIESAPVVLFMKGTPEFPKCGFSRATIGLLGNQ-GVDPA-KFAAYNVLED--PELREGIKEFS--EWPT 74 (121)
T ss_dssp -CHHHHHHHHHHHHSCSEEEEESBCSSSBCTTHHHHHHHHHHHH-TBCGG-GEEEEECTTC--HHHHHHHHHHH--TCCS
T ss_pred CCHHHHHHHHHHhccCCEEEEEeccCCCCCCccHHHHHHHHHHc-CCCcc-eEEEEEecCC--HHHHHHHHHHh--CCCC
Confidence 46778889999999998866544 233444444444 33210 0111112221 34556667666 4444
Q ss_pred EEEEEecCCCcCCcEeccCCcchhhhhhccchhhhhhhhhccCc
Q psy4192 147 LLTTKVDPSIIGDPKSNALTTAPLKLARSFSTSQISQQLVKAPV 190 (317)
Q Consensus 147 ~l~~~vDpsLIGG~~I~vg~~viD~svr~~~~~~~~~~~~~~~~ 190 (317)
....-||-..|||+ |-..+-+..+.+...|.++..
T Consensus 75 vP~vfI~g~~iGG~---------d~l~~l~~~G~L~~~L~~~g~ 109 (121)
T 3gx8_A 75 IPQLYVNKEFIGGC---------DVITSMARSGELADLLEEAQA 109 (121)
T ss_dssp SCEEEETTEEEESH---------HHHHHHHHHTHHHHHHHHTTC
T ss_pred CCeEEECCEEEecH---------HHHHHHHHcCChHHHHHHcCC
Confidence 55667898899997 333344445566666655443
No 16
>3tuf_A Stage III sporulation protein AH; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_A
Probab=21.13 E-value=77 Score=26.83 Aligned_cols=31 Identities=6% Similarity=0.061 Sum_probs=25.3
Q ss_pred ecCCCHHHHHHHHHHHHHHhcCCCeEEEEEE
Q psy4192 121 ARPLEEADKSELQSTLKLFAKKGENILLTTK 151 (317)
Q Consensus 121 A~~Ls~~q~~~I~~~l~~~~~~~~~i~l~~~ 151 (317)
+..|++.+..+|.+.+.+.++-+..|.+++.
T Consensus 164 a~~Ls~~eaaqI~DIV~r~tgv~~dV~Vqf~ 194 (197)
T 3tuf_A 164 SDKHSKSKATAIIDLVAKEIKTMKDVAVTFE 194 (197)
T ss_dssp CSCCCHHHHHHHHHTSCHHHHTTSEEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHhhCCCCceEEEee
Confidence 6889999999999999999953466666653
No 17
>2npb_A Selenoprotein W; structure, thioredoxin-like fold, oxidoreductase; NMR {Mus musculus}
Probab=20.91 E-value=82 Score=23.35 Aligned_cols=40 Identities=10% Similarity=-0.007 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEEEecCCCcCCcEeccCCcch
Q psy4192 128 DKSELQSTLKLFAKKGENILLTTKVDPSIIGDPKSNALTTAP 169 (317)
Q Consensus 128 q~~~I~~~l~~~~~~~~~i~l~~~vDpsLIGG~~I~vg~~vi 169 (317)
.-..+.+.|...+ ...+.+.....|+=-|-|.|.+||.++
T Consensus 18 ra~~laqeLl~~F--p~~l~V~~~l~p~~~G~FEV~vng~lV 57 (96)
T 2npb_A 18 KYLQLKEKLEHEF--PGCLDICGEGTPQVTGFFEVTVAGKLV 57 (96)
T ss_dssp HHHHHHHHHHHHS--BTTEEEEECCCSSCCSCCEEEETTEEE
T ss_pred HHHHHHHHHHHhC--CcceEEEEEEcCCCCcEEEEEECCEEE
Confidence 3456788888888 445777888889888889999988654
No 18
>1d1r_A Hypothetical 11.4 KD protein YCIH in PYRF-OSMB intergenic region; alpha-beta plait, open-faced beta sandwich, ferredoxin-like fold; NMR {Escherichia coli} SCOP: d.64.1.1
Probab=20.90 E-value=73 Score=24.59 Aligned_cols=33 Identities=27% Similarity=0.302 Sum_probs=29.5
Q ss_pred CceEEEeecCCCHHHHHHHHHHHHHHhcCCCeE
Q psy4192 114 LPVEVITARPLEEADKSELQSTLKLFAKKGENI 146 (317)
Q Consensus 114 ~~v~V~sA~~Ls~~q~~~I~~~l~~~~~~~~~i 146 (317)
-.+++++-.++.+..++.|.+.|++++++|..|
T Consensus 45 K~VT~V~Gl~~~~~dlk~laK~LKkk~acgGtV 77 (116)
T 1d1r_A 45 KGVCLITGVDLDDAELTKLAAELKKKCGCGGAV 77 (116)
T ss_dssp CCCEEEECCCSCHHHHHHHHHHHTTSSSSCCBC
T ss_pred CeEEEEeCCcCchhhHHHHHHHHHHHhcCCcEE
Confidence 678999999999999999999999999766665
Done!