RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4192
(317 letters)
>gnl|CDD|215793 pfam00213, OSCP, ATP synthase delta (OSCP) subunit. The ATP D
subunit from E. coli is the same as the OSCP subunit
which is this family. The ATP D subunit from metazoa are
found in family pfam00401.
Length = 171
Score = 94.5 bits (236), Expect = 1e-23
Identities = 48/146 (32%), Positives = 68/146 (46%), Gaps = 22/146 (15%)
Query: 32 GRYATALYSAATKLKQLDGVEKELISFQKSL-------------------KIEALKIVGQ 72
RYA AL+ A + LD VE++L + + L K LK V
Sbjct: 3 RRYAKALFELAKEKGSLDEVEEDLEALKAVLAENPDLREFLSNPLISAEEKKALLKAVFG 62
Query: 73 KKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSEL 132
K S + N L LLAENG++ + + F + HRG + V +A PL E L
Sbjct: 63 GK-LSELTKNFLKLLAENGRLSLLPEIAEEFEELYNEHRGIVEATVTSAVPLSEEQLKAL 121
Query: 133 QSTLKLFAKKGENILLTTKVDPSIIG 158
++ L+ K G+ + L TKVDPS+IG
Sbjct: 122 KAALE--KKTGKKVKLETKVDPSLIG 145
Score = 88.7 bits (221), Expect = 2e-21
Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
Query: 197 GRYATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQKSLKIEALKIVGQ 256
RYA AL+ A + LD VE++L + + L + R+F+ +P I K LK V
Sbjct: 3 RRYAKALFELAKEKGSLDEVEEDLEALKAVLAENPDLREFLSNPLISAEEKKALLKAVFG 62
Query: 257 KKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITAR 306
K S + N L LLAENG++ + + F + HRG + V +A
Sbjct: 63 GK-LSELTKNFLKLLAENGRLSLLPEIAEEFEELYNEHRGIVEATVTSAV 111
>gnl|CDD|223784 COG0712, AtpH, F0F1-type ATP synthase, delta subunit (mitochondrial
oligomycin sensitivity protein) [Energy production and
conversion].
Length = 178
Score = 76.1 bits (188), Expect = 1e-16
Identities = 42/146 (28%), Positives = 66/146 (45%), Gaps = 22/146 (15%)
Query: 32 GRYATALYSAATKLKQLDGVEKELISFQ-------------------KSLKIEALKIVGQ 72
RYA AL+ A + QL+ VE+EL K E L + +
Sbjct: 9 RRYAKALFELAEEKGQLEEVEEELTFLAEILKNSPKLKQLLSSPAVSAEDKKELLISIFK 68
Query: 73 KKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSEL 132
K N L LLAEN ++ + ++ F + A RG + EV +A L + ++L
Sbjct: 69 KIGDPLL-QNFLRLLAENKRLNLLPEILEEFLKLAAESRGIVEAEVTSAFELSDEQLTKL 127
Query: 133 QSTLKLFAKKGENILLTTKVDPSIIG 158
++ L+ K G+ + L K+DPS+IG
Sbjct: 128 EAKLE--KKFGKKVKLNNKIDPSLIG 151
Score = 73.0 bits (180), Expect = 1e-15
Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
Query: 197 GRYATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQKSLKIEALKIVGQ 256
RYA AL+ A + QL+ VE+EL + LK K + + P + K E L + +
Sbjct: 9 RRYAKALFELAEEKGQLEEVEEELTFLAEILKNSPKLKQLLSSPAVSAEDKKELLISIFK 68
Query: 257 KKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITA 305
K N L LLAEN ++ + ++ F + A RG + EV +A
Sbjct: 69 KIGDPLL-QNFLRLLAENKRLNLLPEILEEFLKLAAESRGIVEAEVTSA 116
>gnl|CDD|235593 PRK05758, PRK05758, F0F1 ATP synthase subunit delta; Validated.
Length = 177
Score = 75.6 bits (187), Expect = 2e-16
Identities = 42/145 (28%), Positives = 62/145 (42%), Gaps = 24/145 (16%)
Query: 33 RYATALYSAATKLKQLDGVEKELISFQ------------------KSLKIEALKIVGQKK 74
YA AL+ A + LD +EL K + L V K
Sbjct: 10 PYAKALFEVALEKGSLDAWSEELTFLAEVAENEDLAALLSSPLVSAEQKKKLLAAVF--K 67
Query: 75 NFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQS 134
+ S N L +LAENG++ + ++ F + A H + EV +A PL E +L++
Sbjct: 68 SLSEYVQNFLKVLAENGRLALLPEILEQFEALRAEHENIVDAEVTSAFPLSEEQLDKLKA 127
Query: 135 TL-KLFAKKGENILLTTKVDPSIIG 158
L K +K + L KVDPS+IG
Sbjct: 128 ALEKRLGRK---VKLNEKVDPSLIG 149
Score = 66.0 bits (162), Expect = 5e-13
Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 3/108 (2%)
Query: 198 RYATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQKSLKIEALKIVGQK 257
YA AL+ A + LD +EL +F + + + P + K + L V
Sbjct: 10 PYAKALFEVALEKGSLDAWSEEL-TFLAEVAENEDLAALLSSPLVSAEQKKKLLAAVF-- 66
Query: 258 KNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITA 305
K+ S N L +LAENG++ + ++ F + A H + EV +A
Sbjct: 67 KSLSEYVQNFLKVLAENGRLALLPEILEQFEALRAEHENIVDAEVTSA 114
>gnl|CDD|237386 PRK13429, PRK13429, F0F1 ATP synthase subunit delta; Provisional.
Length = 181
Score = 66.8 bits (164), Expect = 2e-13
Identities = 39/145 (26%), Positives = 63/145 (43%), Gaps = 21/145 (14%)
Query: 33 RYATALYSAATKLKQLDGVEKELISFQKSL-------------------KIEALKIVGQK 73
RYA AL+ A + QLD V +EL + L K L+ + K
Sbjct: 9 RYAKALFQLAKEKGQLDSVYEELKQLAELLEDSPELRDALSNPVLSAEEKKAVLEKLLGK 68
Query: 74 KNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQ 133
S +N L LLA+ ++ + + + + +G + V +A PL EA + ++
Sbjct: 69 LKVSPEVLNFLKLLADRRRLGILPEIAARYLELADEQKGIVRATVTSAVPLSEAQQEAIR 128
Query: 134 STLKLFAKKGENILLTTKVDPSIIG 158
L+ G+ + L T VDPS+IG
Sbjct: 129 QKLE--KMTGKKVELDTAVDPSLIG 151
Score = 51.7 bits (125), Expect = 5e-08
Identities = 28/108 (25%), Positives = 50/108 (46%)
Query: 198 RYATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQKSLKIEALKIVGQK 257
RYA AL+ A + QLD V +EL + L+ + RD + +P + K L+ + K
Sbjct: 9 RYAKALFQLAKEKGQLDSVYEELKQLAELLEDSPELRDALSNPVLSAEEKKAVLEKLLGK 68
Query: 258 KNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITA 305
S +N L LLA+ ++ + + + + +G + V +A
Sbjct: 69 LKVSPEVLNFLKLLADRRRLGILPEIAARYLELADEQKGIVRATVTSA 116
>gnl|CDD|130215 TIGR01145, ATP_synt_delta, ATP synthase, F1 delta subunit. This
model describes the ATP synthase delta subunit in
bacteria, mitochondria, and chloroplasts. It is
sometimes called OSCP for Oligomycin Sensitivity
Conferring Protein. F1/F0-ATP synthase is a
multisubunit, membrane associated enzyme found in
bacteria and organelles of higher eukaryotes, namely,
mitochondria and chloroplast. This enzyme is principally
involved in the synthesis of ATP from ADP and inorganic
phosphate by coupling the energy derived from the proton
electrochemical gradient across the biological membrane.
A brief description of this multisubunit enzyme complex:
F1 and F0 represent two major clusters of subunits.
Delta subunit belongs to the F1 cluster or sector and
functionally implicated in the overall stability of the
complex. Expression of truncated forms of this subunit
results in low ATPase activity [Energy metabolism,
ATP-proton motive force interconversion].
Length = 172
Score = 56.2 bits (136), Expect = 1e-09
Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 19/144 (13%)
Query: 33 RYATALYSAATKLKQLDGVEKELIS----FQKSLKIEAL----KIVGQKK---------- 74
YA AL+ A + L+ + L + + +++ I +KK
Sbjct: 4 PYAKALFEIANEKSSLEEWGEMLNFVKEVLKNNKELKKFLSNPLISAEKKKEFIKNVFGE 63
Query: 75 NFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQS 134
+S+NLL LLAENG++ + +++ F + + VEVI+A+PL E ++++
Sbjct: 64 QLDESSLNLLLLLAENGRLAALPDILDQFLKLSYEAQQTADVEVISAKPLTEDQQAKIAE 123
Query: 135 TLKLFAKKGENILLTTKVDPSIIG 158
L+ + + L KVD +IG
Sbjct: 124 KLEKITGAAK-VKLNCKVDKDLIG 146
Score = 56.2 bits (136), Expect = 1e-09
Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 198 RYATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQKSLKIEALKIVGQK 257
YA AL+ A + L+ + L ++ LK + + + F+ +P I K E +K V
Sbjct: 4 PYAKALFEIANEKSSLEEWGEMLNFVKEVLKNNKELKKFLSNPLISAEKKKEFIKNVF-G 62
Query: 258 KNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITA 305
+ +S+NLL LLAENG++ + +++ F + + VEVI+A
Sbjct: 63 EQLDESSLNLLLLLAENGRLAALPDILDQFLKLSYEAQQTADVEVISA 110
>gnl|CDD|237387 PRK13430, PRK13430, F0F1 ATP synthase subunit delta; Provisional.
Length = 271
Score = 38.8 bits (91), Expect = 0.002
Identities = 36/147 (24%), Positives = 57/147 (38%), Gaps = 26/147 (17%)
Query: 32 GRYATALYSAATKLKQLDGVEKELISFQKSL-------------------KIEAL-KIVG 71
G A + A LD VE EL + L K E L +++
Sbjct: 103 GVRALLASAEAQG--ALDDVEDELFRLGRILASNPELRLALSDRAAPAEAKRELLARLLY 160
Query: 72 QKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSE 131
K + + L + ++I+ ++ S + AA RG V TA PL + K
Sbjct: 161 GK--VTPVTERLAEQAVGRPRGRSIEEGLDELSNLAAARRGRSVATVTTAVPLSDEQKQR 218
Query: 132 LQSTLKLFAKKGENILLTTKVDPSIIG 158
L + L G + L ++VDPS++G
Sbjct: 219 LAAALS--RIYGRPVHLNSEVDPSVLG 243
Score = 35.3 bits (82), Expect = 0.028
Identities = 26/110 (23%), Positives = 44/110 (40%), Gaps = 5/110 (4%)
Query: 197 GRYATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQKSLKIEAL-KIVG 255
G A + A LD VE EL + L ++ + R + D K E L +++
Sbjct: 103 GVRALLASAEAQG--ALDDVEDELFRLGRILASNPELRLALSDRAAPAEAKRELLARLLY 160
Query: 256 QKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITA 305
K + + L + ++I+ ++ S + AA RG V TA
Sbjct: 161 GK--VTPVTERLAEQAVGRPRGRSIEEGLDELSNLAAARRGRSVATVTTA 208
>gnl|CDD|184053 PRK13436, PRK13436, F0F1 ATP synthase subunit delta; Provisional.
Length = 179
Score = 36.6 bits (85), Expect = 0.006
Identities = 35/143 (24%), Positives = 54/143 (37%), Gaps = 20/143 (13%)
Query: 34 YATALYSAATKLKQLDGV-------------EKELISFQKSLKI---EALKIVGQ--KKN 75
YA AL+ A + ++ K+LI S I E KI+ +
Sbjct: 11 YAEALFDIANEENNVEKYINEVFKIIEILKNNKDLIKLLTSYFIDKEEKFKIIDKIFSAK 70
Query: 76 FSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQST 135
+N L +LA+N I ++ F + E+ T PL E S +S
Sbjct: 71 IDIYLVNFLKILAKNNLFIYIKQILKKFVKLSNEKLNITYGEIYTTEPLSEVQISRFES- 129
Query: 136 LKLFAKKGENILLTTKVDPSIIG 158
KL K + + L K+DP +I
Sbjct: 130 -KLSKKLNKKVHLVNKIDPKLIA 151
>gnl|CDD|139571 PRK13434, PRK13434, F0F1 ATP synthase subunit delta; Provisional.
Length = 184
Score = 36.1 bits (83), Expect = 0.009
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 199 YATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKK 258
YA+AL AA ++ VE+EL Q L D K R+F L PT+ K E +
Sbjct: 10 YASALLGAANSPEE---VEQELGDLVQLLFKDEKIRNFFLSPTVSPEEK-EQTLAKNLRG 65
Query: 259 NFSAASINLLALLAENGKIKNIDGVINNFSI 289
S ++N L +L G+ + + +F++
Sbjct: 66 KISDITLNFLGVLLNKGRFIYLPEIQKDFTV 96
>gnl|CDD|177042 CHL00119, atpD, ATP synthase CF1 delta subunit; Validated.
Length = 184
Score = 36.1 bits (84), Expect = 0.010
Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Query: 60 KSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVI 119
K+ K E +K + ++ L +L + G+I +D +I + ++ EV
Sbjct: 57 KNAKKEVIKKT-FGSQINENTLKFLMVLVDRGRIALLDAIIEKYLELVYKLASIKIAEVS 115
Query: 120 TARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIG 158
TA PL A + L LK E I L VDPS+IG
Sbjct: 116 TAVPLSSAQEEALIEKLKEMTNAKE-IKLVITVDPSLIG 153
Score = 36.1 bits (84), Expect = 0.010
Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 199 YATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKK 258
YA AL A + ++ + ++ L + + F+ +P I K+ K E +K
Sbjct: 12 YAEALLEFAKEKNIMEQITADIQLILTFLNESPELKKFLANPLISKNAKKEVIKKT-FGS 70
Query: 259 NFSAASINLLALLAENGKIKNIDGVINNF 287
+ ++ L +L + G+I +D +I +
Sbjct: 71 QINENTLKFLMVLVDRGRIALLDAIIEKY 99
>gnl|CDD|236271 PRK08474, PRK08474, F0F1 ATP synthase subunit delta; Validated.
Length = 176
Score = 35.3 bits (82), Expect = 0.019
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 6/99 (6%)
Query: 198 RYATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQKSLKIE-ALKIVGQ 256
RYA AL S+ + +L+ + L A D KF++ + P I K KIE L V
Sbjct: 8 RYAKALLSSLSS-DELNDIYSNLKILSSAFA-DEKFKEIISSPEISKEQKIEFLLSFV-- 63
Query: 257 KKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHR 295
N +A N + LLAEN +++ I + +A
Sbjct: 64 -DNANAKFQNFIKLLAENKRLELIPAIAKELERQIALKE 101
>gnl|CDD|223545 COG0469, PykF, Pyruvate kinase [Carbohydrate transport and
metabolism].
Length = 477
Score = 32.1 bits (74), Expect = 0.37
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 5/34 (14%)
Query: 93 IKNIDGVINNFSIIMAAHRGDLPVEVITARPLEE 126
+ N+D +I IM A RGDL VE+ PLEE
Sbjct: 230 VDNLDEIIEASDGIMVA-RGDLGVEI----PLEE 258
Score = 30.2 bits (69), Expect = 1.3
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 277 IKNIDGVINNFSIIMAAHRGDLPVEV 302
+ N+D +I IM A RGDL VE+
Sbjct: 230 VDNLDEIIEASDGIMVA-RGDLGVEI 254
>gnl|CDD|184054 PRK13441, PRK13441, F0F1 ATP synthase subunit delta; Provisional.
Length = 180
Score = 30.9 bits (70), Expect = 0.51
Identities = 22/111 (19%), Positives = 46/111 (41%), Gaps = 5/111 (4%)
Query: 197 GRYATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQKSLKIEALKIVGQ 256
+YA AL + A +L++ + E + + ++F +P ++ K+ +K + +
Sbjct: 8 SKYARALLNVAIELEKEEEY-GEFLDLVCQIY--ESAKEFFDNPIVKPEKKVSLIKEIMK 64
Query: 257 --KKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITA 305
+ N L L+ EN + K + + F +PV + TA
Sbjct: 65 EFGQEMDEFFENFLNLVFENKRQKLLPQIRALFEYEKILSEQKVPVNLTTA 115
>gnl|CDD|173361 PTZ00066, PTZ00066, pyruvate kinase; Provisional.
Length = 513
Score = 31.7 bits (72), Expect = 0.57
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 15/56 (26%)
Query: 77 SAASINLL-ALLAENG-------KIKNIDGVINNFSI------IMAAHRGDLPVEV 118
SA + L LL E G KI+NI+G+IN I IM A RGDL +E+
Sbjct: 234 SADDVRLCRQLLGERGRHIKIIPKIENIEGLINFDEILAESDGIMVA-RGDLGMEI 288
Score = 31.7 bits (72), Expect = 0.57
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 15/56 (26%)
Query: 261 SAASINLL-ALLAENG-------KIKNIDGVINNFSI------IMAAHRGDLPVEV 302
SA + L LL E G KI+NI+G+IN I IM A RGDL +E+
Sbjct: 234 SADDVRLCRQLLGERGRHIKIIPKIENIEGLINFDEILAESDGIMVA-RGDLGMEI 288
>gnl|CDD|180487 PRK06247, PRK06247, pyruvate kinase; Provisional.
Length = 476
Score = 30.3 bits (69), Expect = 1.4
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
Query: 93 IKNIDGVINNFSIIMAAHRGDLPVEVITARPLEE 126
I ++ ++ IM A RGDL VEV PLE+
Sbjct: 224 IDRLEAIVEASDAIMVA-RGDLGVEV----PLEQ 252
>gnl|CDD|165762 PLN00196, PLN00196, alpha-amylase; Provisional.
Length = 428
Score = 29.5 bits (66), Expect = 2.5
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 194 GTDGRYATALYSAATKLKQLDG-VEKELISFQQALKTDVKFRDFVLDPTIQKSLKIEALK 252
GT A ++AA + L+ V++ELI + LK+D+ F + LD S ++ +
Sbjct: 157 GTGNLDTGADFAAAPDIDHLNKRVQRELIGWLLWLKSDIGFDAWRLDFAKGYSAEVAKVY 216
Query: 253 IVGQKKNFSAASI 265
I G + +F+ A I
Sbjct: 217 IDGTEPSFAVAEI 229
>gnl|CDD|235619 PRK05826, PRK05826, pyruvate kinase; Provisional.
Length = 465
Score = 29.4 bits (67), Expect = 3.0
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 93 IKNIDGVINNFSIIMAAHRGDLPVEV 118
+ NID +I IM A RGDL VE+
Sbjct: 228 VDNIDEIIEASDGIMVA-RGDLGVEI 252
Score = 29.4 bits (67), Expect = 3.0
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 277 IKNIDGVINNFSIIMAAHRGDLPVEV 302
+ NID +I IM A RGDL VE+
Sbjct: 228 VDNIDEIIEASDGIMVA-RGDLGVEI 252
>gnl|CDD|234395 TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster maturation GTPase
HydF. This model describes the family of the [Fe]
hydrogenase maturation protein HypF as characterized in
Chlamydomonas reinhardtii and found, in an operon with
radical SAM proteins HydE and HydG, in numerous
bacteria. It has GTPase activity, can bind an 4Fe-4S
cluster, and is essential for hydrogenase activity
[Protein fate, Protein modification and repair].
Length = 391
Score = 28.6 bits (65), Expect = 4.1
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 103 FSIIMAAHRGDLPVEVITARPLEE 126
FSI+ A ++GDL V A+ ++
Sbjct: 264 FSILFARYKGDLATFVEGAKAIDR 287
Score = 28.2 bits (64), Expect = 5.7
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 287 FSIIMAAHRGDLPVEV 302
FSI+ A ++GDL V
Sbjct: 264 FSILFARYKGDLATFV 279
>gnl|CDD|129465 TIGR00368, TIGR00368, Mg chelatase-related protein. The N-terminal
end matches very strongly a pfam Mg_chelatase domain
[Unknown function, General].
Length = 499
Score = 28.7 bits (64), Expect = 5.1
Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 3/78 (3%)
Query: 50 GVEKELISFQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAA 109
+ KE F + I L Q + L LA +GK++ I GV+ I A
Sbjct: 68 DLPKEGGRFDLPIAIGILAASEQLDAKNLGEYLFLGELALDGKLRGIKGVL---PAIALA 124
Query: 110 HRGDLPVEVITARPLEEA 127
+ ++ EEA
Sbjct: 125 QKSGRKFIIVPKENAEEA 142
>gnl|CDD|183586 PRK12549, PRK12549, shikimate 5-dehydrogenase; Reviewed.
Length = 284
Score = 28.3 bits (64), Expect = 5.4
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 260 FSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRG-DLPVEVITARFW 308
F AA + LA + DG+++ MA H G LP E++ W
Sbjct: 175 FPAARATAGSDLAAA--LAAADGLVHATPTGMAKHPGLPLPAELLRPGLW 222
>gnl|CDD|235971 PRK07219, PRK07219, DNA topoisomerase I; Validated.
Length = 822
Score = 28.4 bits (64), Expect = 5.7
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 115 PVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVD 153
P E+I A P+++ K + LK AK + I++ T D
Sbjct: 70 PAELIDADPVKKITKQNYINALKKLAKDADEIIIATDYD 108
>gnl|CDD|172536 PRK14042, PRK14042, pyruvate carboxylase subunit B; Provisional.
Length = 596
Score = 28.1 bits (62), Expect = 8.0
Identities = 44/186 (23%), Positives = 73/186 (39%), Gaps = 23/186 (12%)
Query: 4 FRPLARSFSTSQVSQQLVKAPVQVFGTDGRYATALYSA---ATKLKQLDGVEKELISFQK 60
F+ + + +S + Q + VQ++ G + LY+ L ++D V KE+ +K
Sbjct: 270 FKAVRKKYSQFESEAQNIDPRVQLYQVPGGMISNLYNQLKEQNALDKMDAVHKEIPRVRK 329
Query: 61 SLKIEALKIVGQKKNFSAASINLLA-----------LLAENGKIKNIDGVINNFSIIMAA 109
L L + + A IN+L L GK G I++ A
Sbjct: 330 DLGYPPLVTPTSQVVGTQAVINVLTGERYKTITNEVKLYCQGKYGTPPGKISSALRKKAI 389
Query: 110 HRGDLPVEVITARP--LEEADKSELQSTLKLFAKKGENILLTT---KVDPSIIGDPKSNA 164
R EVI RP L + +LQ+ + A E++LL ++ + K+N
Sbjct: 390 GR----TEVIEVRPGDLLPNELDQLQNEISDLALSDEDVLLYAMFPEIGRQFLEQRKNNQ 445
Query: 165 LTTAPL 170
L PL
Sbjct: 446 LIPEPL 451
>gnl|CDD|224891 COG1980, COG1980, Archaeal fructose 1,6-bisphosphatase
[Carbohydrate transport and metabolism].
Length = 369
Score = 27.8 bits (62), Expect = 8.4
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 237 VLDPTIQKSLKIEALKIVGQKKNFSAA---SINLLALLAENGK--IKNI 280
V+DP++ + + E +V KK F +LLAL+ + IK +
Sbjct: 156 VIDPSMHEGFRFEVWDVVEHKKVFLNTPEEMYDLLALIGSKSRYVIKRV 204
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.131 0.349
Gapped
Lambda K H
0.267 0.0719 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,730,138
Number of extensions: 1521172
Number of successful extensions: 1468
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1443
Number of HSP's successfully gapped: 57
Length of query: 317
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 220
Effective length of database: 6,635,264
Effective search space: 1459758080
Effective search space used: 1459758080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.5 bits)