RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4192
(317 letters)
>2wss_S ATP synthase subunit O, mitochondrial; hydrogen ION transport, ATP
synthesis, phosphoprotein, UBL conjugation, transit
peptide; HET: ANP ADP; 3.20A {Bos taurus} PDB: 2bo5_A
2jmx_A
Length = 190
Score = 121 bits (307), Expect = 6e-34
Identities = 67/158 (42%), Positives = 99/158 (62%), Gaps = 18/158 (11%)
Query: 19 QLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISFQKSL---------------- 62
+LV+ PVQ++G +GRYATALYSAA+K +L+ VEKEL+ + L
Sbjct: 3 KLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVGQILKEPKMAASLLNPYVKR 62
Query: 63 --KIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVIT 120
K+++L + K+ FS + NL+ LLAENG++ N VI+ FS +M+ HRG++P V T
Sbjct: 63 SVKVKSLSDMTAKEKFSPLTSNLINLLAENGRLTNTPAVISAFSTMMSVHRGEVPCTVTT 122
Query: 121 ARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIG 158
A L+E +EL++ LK F KG+ + L K+DPSI+G
Sbjct: 123 ASALDETTLTELKTVLKSFLSKGQVLKLEVKIDPSIMG 160
Score = 106 bits (268), Expect = 3e-28
Identities = 57/123 (46%), Positives = 86/123 (69%), Gaps = 1/123 (0%)
Query: 184 QLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQ 243
+LV+ PVQ++G +GRYATALYSAA+K +L+ VEKEL+ Q LK K +L+P ++
Sbjct: 3 KLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVGQILKEP-KMAASLLNPYVK 61
Query: 244 KSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVI 303
+S+K+++L + K+ FS + NL+ LLAENG++ N VI+ FS +M+ HRG++P V
Sbjct: 62 RSVKVKSLSDMTAKEKFSPLTSNLINLLAENGRLTNTPAVISAFSTMMSVHRGEVPCTVT 121
Query: 304 TAR 306
TA
Sbjct: 122 TAS 124
>1abv_A Delta subunit of the F1F0-ATP synthase; ATP synthesis, F1-ATPase,
spectroscopy; NMR {Escherichia coli} SCOP: a.70.1.1 PDB:
2a7u_B
Length = 134
Score = 74.3 bits (183), Expect = 1e-16
Identities = 21/108 (19%), Positives = 49/108 (45%), Gaps = 3/108 (2%)
Query: 198 RYATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQKSLKIEALKIVGQK 257
YA A + A + + ++ + L +F + + + + + ++L + + G++
Sbjct: 9 PYAKAAFDFAVEHQSVERWQDML-AFAAEVTKNEQMAELLSGALAPETLAESFIAVCGEQ 67
Query: 258 KNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITA 305
NL+ ++AENG++ + V+ F + A V+VI+A
Sbjct: 68 --LDENGQNLIRVMAENGRLNALPDVLEQFIHLRAVSEATAEVDVISA 113
Score = 68.9 bits (169), Expect = 1e-14
Identities = 23/121 (19%), Positives = 48/121 (39%), Gaps = 16/121 (13%)
Query: 33 RYATALYSAATKLKQLDGVEKELISFQKSLKIEALK----------------IVGQKKNF 76
YA A + A + + ++ + L + K E + I +
Sbjct: 9 PYAKAAFDFAVEHQSVERWQDMLAFAAEVTKNEQMAELLSGALAPETLAESFIAVCGEQL 68
Query: 77 SAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTL 136
NL+ ++AENG++ + V+ F + A V+VI+A L E +++ + +
Sbjct: 69 DENGQNLIRVMAENGRLNALPDVLEQFIHLRAVSEATAEVDVISAAALSEQQLAKISAAM 128
Query: 137 K 137
+
Sbjct: 129 E 129
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.7 bits (113), Expect = 4e-06
Identities = 65/321 (20%), Positives = 107/321 (33%), Gaps = 120/321 (37%)
Query: 15 QVSQQLVKAPVQVFGTDGRYATALYSAATKL-KQLDGVEKELISFQKSLKIEALKIVGQK 73
Q SQ+ Q G D Y T AA + + D K+ F S+ L IV
Sbjct: 1624 QGSQE------QGMGMD-LYKT--SKAAQDVWNRADNHFKDTYGF--SI----LDIV--I 1666
Query: 74 KNFSAASINLLALLAENGK-IKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSEL 132
N +I+ E GK I+ N+S ++ D ++ T + +E ++
Sbjct: 1667 NNPVNLTIHFGG---EKGKRIRE------NYSAMIFETIVD--GKLKTEKIFKEINEH-- 1713
Query: 133 QSTLKLFAKKGENILLT-TKVDPSIIGDPKSN---ALTT---APLKLARSFSTSQISQQL 185
ST F + E LL+ T ALT A + +S + L
Sbjct: 1714 -STSYTF--RSEKGLLSAT-----------QFTQPALTLMEKAAFEDLKS-------KGL 1752
Query: 186 VKAPVQVFG---TDGRYATALYSAATKLKQLDGVEKELISFQQALKTDVKFR-----DFV 237
+ A G G Y AL S A V +S + ++ V +R V
Sbjct: 1753 IPADATFAGHSL--GEY-AALASLA-------DV----MSIESLVEV-VFYRGMTMQVAV 1797
Query: 238 --------------LDP-TIQKSLKIEALKIV----GQKK-------NF----------- 260
++P + S EAL+ V G++ N+
Sbjct: 1798 PRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAG 1857
Query: 261 SAASINLLALLAENGKIKNID 281
+++ + + K++ ID
Sbjct: 1858 DLRALDTVTNVLNFIKLQKID 1878
Score = 46.6 bits (110), Expect = 9e-06
Identities = 72/441 (16%), Positives = 124/441 (28%), Gaps = 188/441 (42%)
Query: 2 ASFRPLARSFSTSQVSQQLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISFQKS 61
S RPL S + + LV P TA + A++L++ F K
Sbjct: 4 YSTRPLTLSHGSLEHVL-LV--P-----------TASFFIASQLQE---------QFNKI 40
Query: 62 LKIEALKIVGQKKNFSAAS-----INLLALLAENGKIKNIDGV----INNF--------- 103
L + + A + ++ L E K+ D V + F
Sbjct: 41 LPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND 100
Query: 104 -----SIIMAAHRGDLPV--EVITA---------RPLEEADKS----------------- 130
+ ++ + L E+I RP ++ S
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF 160
Query: 131 -----------ELQS------------------TLKLFAK----------KGENIL--LT 149
EL+ TL + +G NIL L
Sbjct: 161 GGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE 220
Query: 150 TKVDPSIIGDPKSNALTTAPLKLARSF---STSQISQQLVKA------PVQVF----GTD 196
+PS P + L + P+ S Q++ +V A P ++ G
Sbjct: 221 ---NPSNT--PDKDYLLSIPI----SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGAT 271
Query: 197 GRYA---TALYSAATKLKQ--LDGVEKEL-ISF------QQALKTDVKFRDFVLDPTI-Q 243
G TA+ A T + V K + + F +A + + L P+I +
Sbjct: 272 GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEA------YPNTSLPPSILE 325
Query: 244 KSLKIEA------LKIVGQKKNFSAASINLL-ALLAENGKIKNIDGVIN---NFSIIMAA 293
SL+ L I + +N + L ++ I ++N N
Sbjct: 326 DSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV-EI-SLVNGAKNL------ 377
Query: 294 HRGDLPVEVITARFWLTGHPS 314
V+ +G P
Sbjct: 378 --------VV------SGPPQ 384
Score = 42.3 bits (99), Expect = 2e-04
Identities = 47/274 (17%), Positives = 84/274 (30%), Gaps = 72/274 (26%)
Query: 11 FSTSQVSQQLVKAPVQVF-GTDGRYATALYSAATKLKQLDGVEKELISFQKSLKIEALKI 69
FS + F G G+ YSA +DG K F K + +
Sbjct: 1659 FSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIF-KEINEHSTSY 1717
Query: 70 V--GQKK-----NFS-----AASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVE 117
+K F+ L G I A H
Sbjct: 1718 TFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADA--------TFAGH------- 1762
Query: 118 VITARPLEE-------ADKSELQSTLKLFAKKGENILLTTKVDPSIIGDPKSNALTTAPL 170
L E AD ++S +++ +G + V +G + P
Sbjct: 1763 -----SLGEYAALASLADVMSIESLVEVVFYRGM--TMQVAVPRDELGRSNYGMIAINPG 1815
Query: 171 KLARSFSTSQISQQLVKA-------PVQV--FGTDGR-YATALYSAATKLKQLDGVEK-- 218
++A SFS + Q +V+ V++ + + + Y A L ++
Sbjct: 1816 RVAASFSQEAL-QYVVERVGKRTGWLVEIVNYNVENQQYVAA--------GDLRALDTVT 1866
Query: 219 ELISFQQALKTDVKFRDFVLDPTIQKSLKIEALK 252
+++F + K D+ +QKSL +E ++
Sbjct: 1867 NVLNFIKLQKIDII--------ELQKSLSLEEVE 1892
Score = 36.2 bits (83), Expect = 0.016
Identities = 28/182 (15%), Positives = 52/182 (28%), Gaps = 79/182 (43%)
Query: 32 GRYATALYSAATKLKQLDGVEKELISFQKSLKIEALKIV---GQ------------KKNF 76
G Y AL S A V +S + +++V G + N+
Sbjct: 1765 GEY-AALASLA-------DV----MSIE-----SLVEVVFYRGMTMQVAVPRDELGRSNY 1807
Query: 77 SAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVE-----------VI--TARP 123
+IN +A + + + V+ + G L VE V R
Sbjct: 1808 GMIAINP-GRVAASFSQEALQYVVER----VGKRTGWL-VEIVNYNVENQQYVAAGDLRA 1861
Query: 124 LEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGDPKSNALTTAPLKLARSFSTSQISQ 183
L+ + + L + I + ++L +S S ++
Sbjct: 1862 LDT-----VTNVLNFIKLQ--KIDI---------------------IELQKSLSLEEVEG 1893
Query: 184 QL 185
L
Sbjct: 1894 HL 1895
Score = 30.0 bits (67), Expect = 1.3
Identities = 29/150 (19%), Positives = 56/150 (37%), Gaps = 47/150 (31%)
Query: 3 SFRPLARSF-------STSQVSQQLVKAPVQ---------VFGT-DG---RYATALYSAA 42
F P+A F ++ +++ LVK V V+ T DG R + S +
Sbjct: 419 RFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSG--SIS 476
Query: 43 TKLKQLDGVEKELISFQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINN 102
++ +D + + + ++ + + +A I+ +F + L +L +N DG
Sbjct: 477 ERI--VDCIIRLPVKWETTTQFKATHIL----DFGPGGASGLGVLTH----RNKDG---- 522
Query: 103 FSIIMAAHRGDLPVEVITARPLEEADKSEL 132
G V VI A L+ +
Sbjct: 523 --------TG---VRVIVAGTLDINPDDDY 541
Score = 27.7 bits (61), Expect = 7.0
Identities = 17/115 (14%), Positives = 35/115 (30%), Gaps = 33/115 (28%)
Query: 7 LARSFSTSQVSQQLVK---------APVQVFGTDGRYATALY--SAATKLKQLDGVEK-- 53
LA S + + +V P G A+ A Q + ++
Sbjct: 1773 LADVMSIESLVE-VVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQ-EALQYVV 1830
Query: 54 ELISFQKSLKIEALKIVGQKKNF-----------SAASINLLALLAENGKIKNID 97
E + + +E IV N+ +++ + + K++ ID
Sbjct: 1831 ERVGKRTGWLVE---IV----NYNVENQQYVAAGDLRALDTVTNVLNFIKLQKID 1878
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 37.2 bits (85), Expect = 0.002
Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 37/67 (55%)
Query: 125 EEADKSELQSTLKLFAKKGENILLTTKVDPSIIGDPKSNALTTAPLKLARSFSTSQISQQ 184
E+ +LQ++LKL+A S AP LA
Sbjct: 18 EKQALKKLQASLKLYA-------------------DDS-----AP-ALA----------- 41
Query: 185 LVKAPVQ 191
+KA ++
Sbjct: 42 -IKATME 47
Score = 27.2 bits (59), Expect = 4.3
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 15/44 (34%)
Query: 52 EKELIS-FQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIK 94
EK+ + Q SLK+ A SA + LA+ ++
Sbjct: 18 EKQALKKLQASLKLYADD--------SAPA---LAI---KATME 47
Score = 27.2 bits (59), Expect = 5.1
Identities = 16/62 (25%), Positives = 22/62 (35%), Gaps = 32/62 (51%)
Query: 217 EKELISFQQALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGK 276
EK QALK K +Q SLK+ A SA + LA+
Sbjct: 18 EK------QALK---K---------LQASLKLYADD--------SAPA---LAI---KAT 45
Query: 277 IK 278
++
Sbjct: 46 ME 47
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.4 bits (83), Expect = 0.013
Identities = 15/93 (16%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Query: 208 TKLKQLDGVEKELIS-FQQALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASIN 266
+ + K+++S F+ A + +D V D + L E + + K+ + ++
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKD-VQDMP-KSILSKEEIDHIIMSKDAVSGTLR 66
Query: 267 LLALLAENGK--IKN-IDGVIN-NFSIIMAAHR 295
L L + ++ ++ V+ N+ +M+ +
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK 99
Score = 34.8 bits (79), Expect = 0.034
Identities = 36/273 (13%), Positives = 79/273 (28%), Gaps = 81/273 (29%)
Query: 53 KELISFQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRG 112
K++ F + + + + + +LL K +
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPD--EVKSLLL---KYLDCR-------------PQ 316
Query: 113 DLPVEVITARPLEEA--------DKSELQSTLKLFAKKGENILLTTKVDPSIIGDPKSNA 164
DLP EV+T P + + + + K LTT ++ S+ N
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK-----LTTIIESSL------NV 365
Query: 165 LTTAPLKLARSFSTSQISQQLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISFQ 224
L A + + F + P + ++ + + ++
Sbjct: 366 LEPAEYR--KMFDRLSVFPPSAHIPTILLSL-------IWF------DVIKSDVMVV--- 407
Query: 225 QALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNI---- 280
++ + SL + Q K + SI + L K++N
Sbjct: 408 -------------VNKLHKYSL------VEKQPKEST-ISIPSI-YLELKVKLENEYALH 446
Query: 281 DGVINNFSIIMAAHRGDLPVEVITA-RFWLTGH 312
++++++I DL + + GH
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479
>3t05_A Pyruvate kinase, PK; tetramer, glycolysis, transferase; 3.05A
{Staphylococcus aureus subsp} PDB: 3t07_A*
Length = 606
Score = 32.6 bits (75), Expect = 0.19
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 18/55 (32%)
Query: 85 ALLAENGK-------------IKNIDGVINNFSIIMAAHRGDLPVEVITARPLEE 126
+L E I NI+ ++ +M A RGD+ VE+ P E+
Sbjct: 226 EILEEQKANISVFPKIENQEGIDNIEEILEVSDGLMVA-RGDMGVEI----PPEK 275
Score = 29.9 bits (68), Expect = 1.2
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 14/47 (29%)
Query: 269 ALLAENGK-------------IKNIDGVINNFSIIMAAHRGDLPVEV 302
+L E I NI+ ++ +M A RGD+ VE+
Sbjct: 226 EILEEQKANISVFPKIENQEGIDNIEEILEVSDGLMVA-RGDMGVEI 271
>3khd_A Pyruvate kinase; malaria, structural genomics, structural GE
consortium, SGC, transferase; 2.70A {Plasmodium
falciparum 3D7}
Length = 520
Score = 32.2 bits (74), Expect = 0.21
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 18/55 (32%)
Query: 85 ALLAENGK-------------IKNIDGVINNFSIIMAAHRGDLPVEVITARPLEE 126
LL G+ I + D ++ IM A RGDL +E+ E+
Sbjct: 250 NLLGPRGRHIKIIPKIENIEGIIHFDKILAESDGIMIA-RGDLGMEI----SPEK 299
Score = 29.9 bits (68), Expect = 1.2
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 14/47 (29%)
Query: 269 ALLAENGK-------------IKNIDGVINNFSIIMAAHRGDLPVEV 302
LL G+ I + D ++ IM A RGDL +E+
Sbjct: 250 NLLGPRGRHIKIIPKIENIEGIIHFDKILAESDGIMIA-RGDLGMEI 295
>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis,
magnesium, transferase, structural genomics, STRU
genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB:
3eoe_A
Length = 511
Score = 32.2 bits (74), Expect = 0.23
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 18/55 (32%)
Query: 85 ALLAENGK-------------IKNIDGVINNFSIIMAAHRGDLPVEVITARPLEE 126
LL G+ + N D ++ IM A RGDL +E+ P E+
Sbjct: 241 GLLGPRGRHIRIIPKIENVEGLVNFDEILAEADGIMIA-RGDLGMEI----PPEK 290
Score = 29.5 bits (67), Expect = 1.4
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 14/47 (29%)
Query: 269 ALLAENGK-------------IKNIDGVINNFSIIMAAHRGDLPVEV 302
LL G+ + N D ++ IM A RGDL +E+
Sbjct: 241 GLLGPRGRHIRIIPKIENVEGLVNFDEILAEADGIMIA-RGDLGMEI 286
>3qtg_A Pyruvate kinase, PK; TIM barrel, glycolysis, transferase; 2.20A
{Pyrobaculum aerophilum}
Length = 461
Score = 32.1 bits (74), Expect = 0.24
Identities = 7/34 (20%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
Query: 93 IKNIDGVINNFSIIMAAHRGDLPVEVITARPLEE 126
+ N++ ++ ++ A RGDL + L+
Sbjct: 237 VNNLEELVQCSDYVVVA-RGDLGLHY----GLDA 265
Score = 29.4 bits (67), Expect = 1.8
Identities = 6/26 (23%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 277 IKNIDGVINNFSIIMAAHRGDLPVEV 302
+ N++ ++ ++ A RGDL +
Sbjct: 237 VNNLEELVQCSDYVVVA-RGDLGLHY 261
>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus
stearothermophilus}
Length = 587
Score = 32.2 bits (74), Expect = 0.26
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
Query: 93 IKNIDGVINNFSIIMAAHRGDLPVEVITARPLEE 126
+ NID ++ +M A RGDL VE+ P EE
Sbjct: 228 VANIDEILEAADGLMVA-RGDLGVEI----PAEE 256
Score = 29.5 bits (67), Expect = 1.7
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 277 IKNIDGVINNFSIIMAAHRGDLPVEV 302
+ NID ++ +M A RGDL VE+
Sbjct: 228 VANIDEILEAADGLMVA-RGDLGVEI 252
>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase,
allosteric enzyme, binding, glycolysis, magnesium,
metal-binding, NUCL binding; 2.00A {Leishmania mexicana}
PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3is4_A* 3ktx_A*
3qv6_A* 3qv7_D* 3qv8_D* 3e0w_A 3e0v_A 3pp7_A* 3qv9_A*
Length = 499
Score = 31.8 bits (73), Expect = 0.26
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 18/55 (32%)
Query: 85 ALLAENGK-------------IKNIDGVINNFSIIMAAHRGDLPVEVITARPLEE 126
L G+ ++NID +I IM A RGDL VE+ P E+
Sbjct: 225 KALGPKGRDIMIICKIENHQGVQNIDSIIEESDGIMVA-RGDLGVEI----PAEK 274
Score = 29.5 bits (67), Expect = 1.5
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 14/47 (29%)
Query: 269 ALLAENGK-------------IKNIDGVINNFSIIMAAHRGDLPVEV 302
L G+ ++NID +I IM A RGDL VE+
Sbjct: 225 KALGPKGRDIMIICKIENHQGVQNIDSIIEESDGIMVA-RGDLGVEI 270
>3ma8_A Pyruvate kinase; parasitology, pyruvate kiase, glycol kinase,
magnesium, transferase, structural genomi structural
genomics consortium; HET: CIT; 2.64A {Cryptosporidium
parvum}
Length = 534
Score = 31.9 bits (73), Expect = 0.26
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
Query: 93 IKNIDGVINNFSIIMAAHRGDLPVEVITARPLEE 126
+ N D + + IM A RGDL +E+ P E+
Sbjct: 285 VINFDSICSESDGIMVA-RGDLGMEI----PPEK 313
Score = 29.6 bits (67), Expect = 1.4
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 277 IKNIDGVINNFSIIMAAHRGDLPVEV 302
+ N D + + IM A RGDL +E+
Sbjct: 285 VINFDSICSESDGIMVA-RGDLGMEI 309
>1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transfer; HET:
FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1
c.1.12.1 c.49.1.1 PDB: 1a3x_A
Length = 500
Score = 31.8 bits (73), Expect = 0.30
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 18/55 (32%)
Query: 85 ALLAENGK-------------IKNIDGVINNFSIIMAAHRGDLPVEVITARPLEE 126
+L E GK + N D ++ +M A RGDL +E+ P E
Sbjct: 226 EVLGEQGKDVKIIVKIENQQGVNNFDEILKVTDGVMVA-RGDLGIEI----PAPE 275
Score = 29.5 bits (67), Expect = 1.6
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 14/47 (29%)
Query: 269 ALLAENGK-------------IKNIDGVINNFSIIMAAHRGDLPVEV 302
+L E GK + N D ++ +M A RGDL +E+
Sbjct: 226 EVLGEQGKDVKIIVKIENQQGVNNFDEILKVTDGVMVA-RGDLGIEI 271
>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery;
1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1
PDB: 1pky_A 1e0u_A
Length = 470
Score = 31.7 bits (73), Expect = 0.32
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
Query: 93 IKNIDGVINNFSIIMAAHRGDLPVEVITARPLEE 126
+ N D ++ IM A RGDL VE+ P+EE
Sbjct: 227 LNNFDEILEASDGIMVA-RGDLGVEI----PVEE 255
Score = 29.0 bits (66), Expect = 2.0
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 277 IKNIDGVINNFSIIMAAHRGDLPVEV 302
+ N D ++ IM A RGDL VE+
Sbjct: 227 LNNFDEILEASDGIMVA-RGDLGVEI 251
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural
genomics, PSI-2, protein structure initiative; 2.80A
{Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Length = 100
Score = 28.4 bits (64), Expect = 1.0
Identities = 7/60 (11%), Positives = 19/60 (31%), Gaps = 8/60 (13%)
Query: 34 YATALYSAATKLKQLDGVEKELISFQKSLKIEALKIVGQKKNFSAASINLLALLAENGKI 93
Y+ A + + D + L F++ ++ ++ +L L +
Sbjct: 6 DPFTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRT 57
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis,
TPR, superhelix, protein binding; HET: MSE; 2.00A
{Pseudomonas aeruginosa} PDB: 2fi7_A
Length = 252
Score = 28.0 bits (63), Expect = 3.8
Identities = 8/62 (12%), Positives = 22/62 (35%), Gaps = 8/62 (12%)
Query: 33 RYATALYSAATKLKQLDGVEKELISFQKSLKIEALKIVGQKKNFSAASINLLALLAENGK 92
+ + Q+ + F+KSL++ +N + ++ + LL + +
Sbjct: 139 ERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--------NRNQPSVALEMADLLYKERE 190
Query: 93 IK 94
Sbjct: 191 YV 192
>3nph_B Phycobilisome 32.1 kDa linker polypeptide, phycoc associated, ROD
2; PFAM00427 domain, linker protein, phycobiliprotein,
photosyn; 1.85A {Synechocystis SP} PDB: 2l3w_A
Length = 148
Score = 26.7 bits (59), Expect = 6.7
Identities = 18/119 (15%), Positives = 46/119 (38%), Gaps = 3/119 (2%)
Query: 168 APLKLARSFSTSQISQQLVKAPVQVFGTDGRYA-TALYSAATKLKQLDGVEKELISFQQA 226
PL+L + ++ ++ QV G D + L SA + L+ + ++ + +
Sbjct: 2 IPLELRSRSTEEEVDAVILAVYRQVLGNDHLMSQERLTSAESLLRGREISVRDFV--RAV 59
Query: 227 LKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVIN 285
++V + F + +++ ++G+ + L + G I+ I+
Sbjct: 60 ALSEVYRQKFFHSNPQNRFIELNYKHLLGRAPYDQSEIAFHTDLYHQGGYEAEINSYID 118
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein;
secretin, TPR repeat, type IV pilus, bacterail
virulence; 1.54A {Neisseria meningitidis}
Length = 225
Score = 26.8 bits (60), Expect = 7.3
Identities = 7/62 (11%), Positives = 14/62 (22%), Gaps = 8/62 (12%)
Query: 33 RYATALYSAATKLKQLDGVEKELISFQKSLKIEALKIVGQKKNFSAASINLLALLAENGK 92
A + + ++SL + F A L G+
Sbjct: 111 TPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--------QPQFPPAFKELARTKMLAGQ 162
Query: 93 IK 94
+
Sbjct: 163 LG 164
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.131 0.349
Gapped
Lambda K H
0.267 0.0666 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,545,083
Number of extensions: 276436
Number of successful extensions: 854
Number of sequences better than 10.0: 1
Number of HSP's gapped: 844
Number of HSP's successfully gapped: 57
Length of query: 317
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 223
Effective length of database: 4,077,219
Effective search space: 909219837
Effective search space used: 909219837
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.9 bits)