RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4192
         (317 letters)



>d1abva_ a.70.1.1 (A:) N-terminal domain of the delta subunit of the
           F1F0-ATP synthase {Escherichia coli [TaxId: 562]}
          Length = 105

 Score = 58.5 bits (141), Expect = 1e-11
 Identities = 16/99 (16%), Positives = 41/99 (41%), Gaps = 3/99 (3%)

Query: 198 RYATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQKSLKIEALKIVGQK 257
            YA A +  A + + ++  +  L +F   +  + +  + +      ++L    + +    
Sbjct: 9   PYAKAAFDFAVEHQSVERWQDML-AFAAEVTKNEQMAELLSGALAPETLAESFIAVC--G 65

Query: 258 KNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRG 296
           +       NL+ ++AENG++  +  V+  F  + A    
Sbjct: 66  EQLDENGQNLIRVMAENGRLNALPDVLEQFIHLRAVSEA 104



 Score = 48.4 bits (115), Expect = 3e-08
 Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 16/96 (16%)

Query: 33  RYATALYSAATKLKQLDGVEKELISFQKSLKIEALK----------------IVGQKKNF 76
            YA A +  A + + ++  +  L    +  K E +                 I    +  
Sbjct: 9   PYAKAAFDFAVEHQSVERWQDMLAFAAEVTKNEQMAELLSGALAPETLAESFIAVCGEQL 68

Query: 77  SAASINLLALLAENGKIKNIDGVINNFSIIMAAHRG 112
                NL+ ++AENG++  +  V+  F  + A    
Sbjct: 69  DENGQNLIRVMAENGRLNALPDVLEQFIHLRAVSEA 104


>d1he1a_ a.24.11.1 (A:) ExoS toxin {Pseudomonas aeruginosa [TaxId:
           287]}
          Length = 135

 Score = 25.2 bits (55), Expect = 7.0
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 6/55 (10%)

Query: 183 QQLVKAPVQVFGTDGRYATALYSAATK------LKQLDGVEKELISFQQALKTDV 231
           + +    +Q +GT G  A+ L   A+         QL  V  E+   +QA++++V
Sbjct: 80  RSIGGIALQQWGTTGGAASQLVLDASPELRREITDQLHQVMSEVALLRQAVESEV 134


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.131    0.349 

Gapped
Lambda     K      H
   0.267   0.0569    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,058,058
Number of extensions: 48401
Number of successful extensions: 138
Number of sequences better than 10.0: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 6
Length of query: 317
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 232
Effective length of database: 1,240,546
Effective search space: 287806672
Effective search space used: 287806672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.6 bits)