BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy4196
         (168 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4IGG|A Chain A, Full-Length Human Alpha-Catenin Crystal Structure
 pdb|4IGG|B Chain B, Full-Length Human Alpha-Catenin Crystal Structure
          Length = 832

 Score = 28.5 bits (62), Expect = 1.7,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 9/70 (12%)

Query: 99  NSVLEELRDKLVSHIKEIGQKEGRDR-DRKLNEMLKKSFPLVRVKQLRPVVMAILRNTTH 157
           N+V + L+D L  ++   G+KE  D  +  +++M KK+  L R  QLR  VM       H
Sbjct: 257 NAVRQALQDLLSEYMGNAGRKERSDALNSAIDKMTKKTRDLRR--QLRKAVM------DH 308

Query: 158 IDDKYLRVLV 167
           + D +L   V
Sbjct: 309 VSDSFLETNV 318


>pdb|1Y8A|A Chain A, Structure Of Gene Product Af1437 From Archaeoglobus
           Fulgidus
          Length = 332

 Score = 27.3 bits (59), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 2/47 (4%)

Query: 90  HGVRRLDFHN-SVLEELRDKLVSHIKEIGQKEGRDRDRKLNEMLKKS 135
           HG   +DF + +V E LR++L+S I  I    G +  RKL+E+  +S
Sbjct: 146 HGTE-VDFDSIAVPEGLREELLSIIDVIASLSGEELFRKLDELFSRS 191


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.139    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,565,694
Number of Sequences: 62578
Number of extensions: 100456
Number of successful extensions: 308
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 307
Number of HSP's gapped (non-prelim): 2
length of query: 168
length of database: 14,973,337
effective HSP length: 92
effective length of query: 76
effective length of database: 9,216,161
effective search space: 700428236
effective search space used: 700428236
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)