BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4196
(168 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Y113|NELFB_DROME Negative elongation factor B OS=Drosophila melanogaster GN=NELF-B
PE=1 SV=1
Length = 594
Score = 196 bits (497), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 101/166 (60%), Positives = 117/166 (70%), Gaps = 37/166 (22%)
Query: 2 SGLEESGIPGQNFLREALTSCTDPLKAIEEFQLDNGILLPSLRQMLPLLDLHGVRRLDFH 61
+GLE+ IPGQ +LREALTSCTDPLKAIE FQL+NG+LLP
Sbjct: 13 TGLEDVNIPGQAYLREALTSCTDPLKAIESFQLENGVLLP-------------------- 52
Query: 62 NSVLEVEVTETLNLLLPSLRQMLPLLDLHGVRRLDFHNSVLEELRDKLVSHIKEIGQKEG 121
SLR MLPLLDLHGVRRLDFH S++EELRDKL++HI E+GQKE
Sbjct: 53 -----------------SLRPMLPLLDLHGVRRLDFHTSLMEELRDKLIAHINEMGQKEP 95
Query: 122 RDRDRKLNEMLKKSFPLVRVKQLRPVVMAILRNTTHIDDKYLRVLV 167
R+RD+KL E+L KSFP+VRVK LRPVVMAILRNT HIDDKYL++LV
Sbjct: 96 RERDKKLKELLVKSFPVVRVKSLRPVVMAILRNTQHIDDKYLKILV 141
>sp|Q8C4Y3|NELFB_MOUSE Negative elongation factor B OS=Mus musculus GN=Cobra1 PE=2 SV=2
Length = 580
Score = 110 bits (276), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 96/169 (56%), Gaps = 38/169 (22%)
Query: 1 MSGLEESGIPGQNFLREALTSCTDPLKAIEEFQLDNGILLPSLRQMLPLLDLHGVRRLDF 60
+GL++ G+ L+E LT+CT+PLKAIE+FQ +NG+LLP
Sbjct: 2 FAGLQDLGVANGEDLKETLTNCTEPLKAIEQFQTENGVLLP------------------- 42
Query: 61 HNSVLEVEVTETLNLLLPSLRQMLPLLDLHGVRRLDFHNSVLEELRDKLVSHIKEIGQK- 119
SL+ LP LDLHG RL+FH SV +ELRDKL+ + I +
Sbjct: 43 ------------------SLQSALPFLDLHGTPRLEFHQSVFDELRDKLLERVSAIASEG 84
Query: 120 EGRDRDRKLNEMLKKSFPLVRVKQLRPVVMAILRNTTHIDDKYLRVLVS 168
+ +R +KL ++L+KSF LV++ L+PVVM ++++ + +K L+++++
Sbjct: 85 KAEERYKKLEDLLEKSFSLVKMPSLQPVVMCVMKHLPKVPEKKLKLVMA 133
>sp|Q8WX92|NELFB_HUMAN Negative elongation factor B OS=Homo sapiens GN=COBRA1 PE=1 SV=1
Length = 580
Score = 110 bits (275), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 96/169 (56%), Gaps = 38/169 (22%)
Query: 1 MSGLEESGIPGQNFLREALTSCTDPLKAIEEFQLDNGILLPSLRQMLPLLDLHGVRRLDF 60
+GL++ G+ L+E LT+CT+PLKAIE+FQ +NG+LLP
Sbjct: 2 FAGLQDLGVANGEDLKETLTNCTEPLKAIEQFQTENGVLLP------------------- 42
Query: 61 HNSVLEVEVTETLNLLLPSLRQMLPLLDLHGVRRLDFHNSVLEELRDKLVSHIKEIGQK- 119
SL+ LP LDLHG RL+FH SV +ELRDKL+ + I +
Sbjct: 43 ------------------SLQSALPFLDLHGTPRLEFHQSVFDELRDKLLERVSAIASEG 84
Query: 120 EGRDRDRKLNEMLKKSFPLVRVKQLRPVVMAILRNTTHIDDKYLRVLVS 168
+ +R +KL ++L+KSF LV++ L+PVVM ++++ + +K L+++++
Sbjct: 85 KAEERYKKLEDLLEKSFSLVKMPSLQPVVMCVMKHLPKVPEKKLKLVMA 133
>sp|Q6P9A2|GLTL4_HUMAN Putative polypeptide N-acetylgalactosaminyltransferase-like protein
4 OS=Homo sapiens GN=GALNTL4 PE=2 SV=2
Length = 607
Score = 33.1 bits (74), Expect = 0.83, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 43 LRQMLPLLDLHGVRRLDFHNSVLEVE-----VTETLNLLLPSLRQMLPLLDLHGVRRLDF 97
L + LP L G R L F +S+ EV V E L++LL S+ + H ++ +
Sbjct: 132 LDRPLPDLRPSGCRNLSFPDSLPEVSIVFIFVNEALSVLLRSIHSAMERTPPHLLKEIIL 191
Query: 98 --HNSVLEELRDKLVSHIKEI-GQKEG 121
NS EEL++KL ++ ++ QK G
Sbjct: 192 VDDNSSNEELKEKLTEYVDKVNSQKPG 218
>sp|O67924|Y2175_AQUAE Uncharacterized protein aq_2175 OS=Aquifex aeolicus (strain VF5)
GN=aq_2175 PE=4 SV=1
Length = 321
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 9/39 (23%)
Query: 15 LREALTSCTDPLKAIEEFQLDNGILLPSLRQMLPLLDLH 53
REA+ +C FQ +GI +P +R+ PL D+H
Sbjct: 258 WREAMITC---------FQCHHGIGIPKMRKFEPLADIH 287
>sp|O21798|NU2M_PANTR NADH-ubiquinone oxidoreductase chain 2 OS=Pan troglodytes GN=MT-ND2
PE=3 SV=1
Length = 347
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 29 IEEFQLDNGILLPSLRQMLPLLDLHGVRRLDFHNSV 64
IEEF +N +++P++ ++ LL+L+ RL + S+
Sbjct: 267 IEEFTKNNSLIIPTIMAIITLLNLYFYLRLIYSTSI 302
>sp|O06998|YVDQ_BACSU Uncharacterized protein YvdQ OS=Bacillus subtilis (strain 168)
GN=yvdQ PE=4 SV=1
Length = 170
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 12 QNFLREALTSCTDPLKAIEEFQLDNGILLPSLRQMLPLLDLH----GVRRLD 59
+ LRE++ C D +K + +NG+ LP P DL+ G R LD
Sbjct: 48 KKLLRESIEKCQDEIKQVSTILKENGVALPPASPEPPTADLNDIPPGARFLD 99
>sp|Q8IBG1|DYHC1_PLAF7 Dynein heavy chain-like protein MAL7P1.162 OS=Plasmodium falciparum
(isolate 3D7) GN=MAL7P1.162 PE=2 SV=2
Length = 4985
Score = 31.2 bits (69), Expect = 3.3, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 36/55 (65%), Gaps = 3/55 (5%)
Query: 116 IGQKEGRDRDRKLNEMLKKSFP-LVRVKQLRPVVM-AILRN-TTHIDDKYLRVLV 167
I +KE ++ D+ ++++ K SFP + + LRP++ + ++N T ID K L+VL+
Sbjct: 3037 IYKKEKKETDKIIDDIFKYSFPDITKEDLLRPILFNSYMKNYYTEIDKKDLKVLI 3091
>sp|Q757C7|LOT5_ASHGO Protein LOT5 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=LOT5 PE=3 SV=2
Length = 269
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 11 GQNFLREALTSCTDPLKAIEEFQLDNGILL-PS-----LRQMLPLLDLHGVRRLDFHNSV 64
G+NFL T L+ + F LD+ ILL P+ LR + H VRR D V
Sbjct: 51 GRNFLFGRFTDSEPQLQDTDLFVLDSCILLWPAHALRGLRIPYDAVIYHAVRRADVLELV 110
Query: 65 LEVEVTETLNLLLP 78
L VE TL+ L P
Sbjct: 111 LAVERDATLDSLFP 124
>sp|Q9LJH5|GLO4_ARATH Peroxisomal (S)-2-hydroxy-acid oxidase GLO4 OS=Arabidopsis thaliana
GN=GLO4 PE=2 SV=1
Length = 363
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 66/145 (45%), Gaps = 19/145 (13%)
Query: 24 DPLKAIEEFQLDNGILLPSLRQMLPLLDLHGVRRLDFHNSVLEVEVTETLNLLLPSLRQM 83
D LKA+E +GI++ + HG R+LD+ + + V L ++ +++
Sbjct: 235 DALKAVEAGV--DGIVVSN----------HGARQLDYSPATITV-----LEEVVHAVKGR 277
Query: 84 LPLLDLHGVRR-LDFHNSVLEELRDKLVSHIKEIG-QKEGRDRDRKLNEMLKKSFPLVRV 141
+P+L GVRR D ++ + L+ G +G D +K+ +MLK F +
Sbjct: 278 IPVLLDGGVRRGTDVFKALALGAQAVLIGRPIVYGLAAKGEDGVKKVIDMLKNEFEITMA 337
Query: 142 KQLRPVVMAILRNTTHIDDKYLRVL 166
P + + RN +++ ++ +
Sbjct: 338 LSGCPTIDDVTRNHVRTENERIKSM 362
>sp|Q9QUR2|DCTN4_RAT Dynactin subunit 4 OS=Rattus norvegicus GN=Dctn4 PE=2 SV=1
Length = 467
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 11/56 (19%)
Query: 107 DKLVSHIKEIGQKEGRDRDRKLNEMLKKSFPLVRVKQLRPVVMAILRNTTHIDDKY 162
+KL+ + +++ QKE +RDRK L R + P +A ++T H+ DKY
Sbjct: 145 NKLIEYYQQLAQKEKVERDRKK---------LARRRNYMP--LAFSQHTIHVVDKY 189
>sp|Q8CBY8|DCTN4_MOUSE Dynactin subunit 4 OS=Mus musculus GN=Dctn4 PE=1 SV=1
Length = 467
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 11/56 (19%)
Query: 107 DKLVSHIKEIGQKEGRDRDRKLNEMLKKSFPLVRVKQLRPVVMAILRNTTHIDDKY 162
+KL+ + +++ QKE +RDRK L R + P +A ++T H+ DKY
Sbjct: 145 NKLIEYYQQLAQKEKVERDRKK---------LARRRNYMP--LAFSQHTIHVVDKY 189
>sp|Q24JJ8|GLO3_ARATH Peroxisomal (S)-2-hydroxy-acid oxidase GLO3 OS=Arabidopsis thaliana
GN=GLO3 PE=2 SV=1
Length = 363
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 19/142 (13%)
Query: 24 DPLKAIEEFQLDNGILLPSLRQMLPLLDLHGVRRLDFHNSVLEVEVTETLNLLLPSLRQM 83
D LKA+E +GI++ + HG R+LD+ + + V L ++ +R
Sbjct: 235 DALKAVEAGV--DGIIVSN----------HGGRQLDYSPATITV-----LEEVVQVVRGR 277
Query: 84 LPLLDLHGVRR-LDFHNSVLEELRDKLVSHIKEIG-QKEGRDRDRKLNEMLKKSFPLVRV 141
+P+L GVRR D ++ + L+ G +G D +K+ +MLK F +
Sbjct: 278 IPVLLDGGVRRGTDVFKALALGAQAVLIGRPIIYGLAAKGEDGVKKVIDMLKNEFEITMA 337
Query: 142 KQLRPVVMAILRNTTHIDDKYL 163
P + I RN +++ L
Sbjct: 338 LSGCPTIDDITRNHVRTENERL 359
>sp|Q9W4S9|PDE4C_DROME cAMP-specific 3',5'-cyclic phosphodiesterase, isoforms N/G
OS=Drosophila melanogaster GN=dnc PE=3 SV=2
Length = 983
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 46 MLPLLDLHGVRRLDFHNSVLEVEVTETLNLLL--PSLRQMLPLLDLHGV 92
+ L+ H V+ FHNS+ +VT++ N+LL P+L + L++ G
Sbjct: 630 FMSTLEDHYVKDNPFHNSLHAADVTQSTNVLLNTPALEGVFTPLEVGGA 678
>sp|P12252|PDE4B_DROME cAMP-specific 3',5'-cyclic phosphodiesterase OS=Drosophila
melanogaster GN=dnc PE=1 SV=4
Length = 1070
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 46 MLPLLDLHGVRRLDFHNSVLEVEVTETLNLLL--PSLRQMLPLLDLHGV 92
+ L+ H V+ FHNS+ +VT++ N+LL P+L + L++ G
Sbjct: 717 FMSTLEDHYVKDNPFHNSLHAADVTQSTNVLLNTPALEGVFTPLEVGGA 765
>sp|Q9W4T4|PDE4A_DROME cAMP-specific 3',5'-cyclic phosphodiesterase, isoform I
OS=Drosophila melanogaster GN=dnc PE=1 SV=2
Length = 1209
Score = 29.6 bits (65), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 46 MLPLLDLHGVRRLDFHNSVLEVEVTETLNLLL--PSLRQMLPLLDLHGV 92
+ L+ H V+ FHNS+ +VT++ N+LL P+L + L++ G
Sbjct: 856 FMSTLEDHYVKDNPFHNSLHAADVTQSTNVLLNTPALEGVFTPLEVGGA 904
>sp|B7ZC77|CTNA2_DANRE Catenin alpha-2 OS=Danio rerio GN=Ctnna2 PE=2 SV=1
Length = 865
Score = 29.6 bits (65), Expect = 9.5, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 9/70 (12%)
Query: 99 NSVLEELRDKLVSHIKEIGQKE-GRDRDRKLNEMLKKSFPLVRVKQLRPVVMAILRNTTH 157
N+V + L+D L ++ G+KE G + +++M KK+ L R QLR VM H
Sbjct: 296 NAVRQALQDLLSEYMNNTGRKEKGDPLNSAIDKMTKKTRDLRR--QLRKAVM------DH 347
Query: 158 IDDKYLRVLV 167
I D +L V
Sbjct: 348 ISDSFLETNV 357
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.141 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,400,915
Number of Sequences: 539616
Number of extensions: 2404462
Number of successful extensions: 7914
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 7898
Number of HSP's gapped (non-prelim): 41
length of query: 168
length of database: 191,569,459
effective HSP length: 109
effective length of query: 59
effective length of database: 132,751,315
effective search space: 7832327585
effective search space used: 7832327585
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)