Query psy4196
Match_columns 168
No_of_seqs 36 out of 38
Neff 2.5
Searched_HMMs 29240
Date Fri Aug 16 19:18:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4196.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4196hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d9i_A NEDD4-binding protein 2 42.9 63 0.0021 22.0 5.6 24 86-109 10-33 (96)
2 2fiy_A Protein FDHE homolog; F 37.7 35 0.0012 28.9 4.4 71 81-152 82-160 (309)
3 3pkr_A FLIG, flagellar motor s 32.2 29 0.00098 29.1 2.9 137 1-156 11-155 (279)
4 2vkc_A NEDD4-binding protein 2 30.8 1.1E+02 0.0037 22.4 5.6 23 87-109 56-78 (135)
5 3ax2_A Mitochondrial import re 26.0 50 0.0017 22.9 2.8 26 10-35 35-60 (73)
6 3fau_A NEDD4-binding protein 2 24.1 50 0.0017 21.9 2.5 23 87-109 3-25 (82)
7 2l0e_A Sodium/hydrogen exchang 23.6 63 0.0022 19.3 2.6 21 15-35 8-28 (33)
8 1lbu_A Muramoyl-pentapeptide c 23.4 35 0.0012 26.1 1.7 14 26-39 47-60 (213)
9 1z96_A DNA-damage, UBA-domain 21.4 87 0.003 17.8 2.9 27 4-31 11-38 (40)
10 2zqe_A MUTS2 protein; alpha/be 20.9 68 0.0023 21.8 2.7 30 87-116 7-36 (83)
11 4dhx_B Enhancer of yellow 2 tr 20.9 2.2E+02 0.0076 20.5 5.6 61 13-116 31-94 (101)
12 2ekk_A UBA domain from E3 ubiq 20.6 37 0.0013 20.7 1.2 28 4-32 16-43 (47)
No 1
>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1
Probab=42.87 E-value=63 Score=22.02 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=18.4
Q ss_pred cccccCCchhhhHHHHHHHHHHHH
Q psy4196 86 LLDLHGVRRLDFHNSVLEELRDKL 109 (168)
Q Consensus 86 lld~hgVrRldfh~svle~Lr~~L 109 (168)
-||+||.+..+....+.+.|.+..
T Consensus 10 ~lDLHGl~v~eA~~~L~~~L~~~~ 33 (96)
T 2d9i_A 10 VLDLHGLHVDEALEHLMRVLEKKT 33 (96)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHH
T ss_pred eEECCCCCHHHHHHHHHHHHHHHH
Confidence 478899999888887777766544
No 2
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=37.72 E-value=35 Score=28.86 Aligned_cols=71 Identities=20% Similarity=0.215 Sum_probs=50.0
Q ss_pred hhhcccccccCCchhhhHHHHHHHHH--------HHHHHHHHHhccccccchHHHHHHHHhhhcCccccCchhHHHHHHH
Q psy4196 81 RQMLPLLDLHGVRRLDFHNSVLEELR--------DKLVSHIKEIGQKEGRDRDRKLNEMLKKSFPLVRVKQLRPVVMAIL 152 (168)
Q Consensus 81 ~~~~~lld~hgVrRldfh~svle~Lr--------~~Ll~~I~~l~~~~~~~~~~kL~~lL~kSFp~i~v~~LrpVvmavL 152 (168)
++-.|+||..+..|...++.++.+|= +.+.+.|+.+-+....+...-...+|...|+.+.. ...+++++.|
T Consensus 82 ~~g~P~L~~~~~~~d~~w~~~l~~Ll~~l~~~~~~~~~~~l~~L~~~~~~~l~~~a~~lL~~~~~~~~~-~~~~fi~aaL 160 (309)
T 2fiy_A 82 EHGMPPLAYDLLVREGAWLPWLDALLAGYPAPANAAVGAALEQLREAEEGQRKAWAIALLSGQFDLLPA-ALVPFLGAAL 160 (309)
T ss_dssp HTTCCTTCHHHHHHHCTTHHHHHHHHHTCCCCSSHHHHHHHHHHHHCCHHHHHHHHHHHHTTCGGGSCG-GGHHHHHHHH
T ss_pred hcCCCCCCccccCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhCCHHHHHHHHHHHHcCCcccCch-HHHHHHHHHH
Confidence 35678888888888888788877654 45556666666555556777788889888887654 3667776655
No 3
>3pkr_A FLIG, flagellar motor switch protein; FLIF, FLIM, MOTA, motor prote; 2.60A {Helicobacter pylori} PDB: 3usw_A 3pl4_A 3usy_A
Probab=32.17 E-value=29 Score=29.13 Aligned_cols=137 Identities=17% Similarity=0.220 Sum_probs=52.3
Q ss_pred CCcccccCCCcHHHHHHHhhcCCCHHHHHHHHHHhcCccccc-hhhhccccccccccccccccchhHHHHHHHhhhhhhh
Q psy4196 1 MSGLEESGIPGQNFLREALTSCTDPLKAIEEFQLDNGILLPS-LRQMLPLLDLHGVRRLDFHNSVLEVEVTETLNLLLPS 79 (168)
Q Consensus 1 ~~gle~~Gi~G~~~lreaLs~~tdPl~aIe~FQ~eNgIlLps-l~~~LpLLDL~~vr~~~~~~s~~~~e~~~t~~~~~p~ 79 (168)
|+|-.-++.-|.+|++++|+.+--|.+|-.-+..-.|-.-.+ -...|.-+|-.- =-..++-|-|.|.-+++-.
T Consensus 11 ~~~~~~~~~gg~~~a~~~L~kaLg~~~A~~ll~~i~~~~~~~~~~~~L~~~dp~~------La~~l~~EhPQtiAlILs~ 84 (279)
T 3pkr_A 11 MTGGQQMGRGSLEYARELLTRTLGSEEAKKVMDKLTKSLQTQKNFAYLGKIKPQQ------LADFIINEHPQTIALILAH 84 (279)
T ss_dssp ------------------------------------------CCCGGGGGSCHHH------HHHHHTTSCHHHHHHHHHT
T ss_pred hcccccccCChHHHHHHHHHHhcCHHHHHHHHHHHhcccccCchHHHHhCCCHHH------HHHHHHhcCHHHHHHHHHc
Confidence 678888889999999999999988887755444332222111 122222222200 0123555778887777654
Q ss_pred h--hhhcccccccCCchhhhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHhhhcCccc-----cCchhHHHHHHH
Q psy4196 80 L--RQMLPLLDLHGVRRLDFHNSVLEELRDKLVSHIKEIGQKEGRDRDRKLNEMLKKSFPLVR-----VKQLRPVVMAIL 152 (168)
Q Consensus 80 ~--~~~~~lld~hgVrRldfh~svle~Lr~~Ll~~I~~l~~~~~~~~~~kL~~lL~kSFp~i~-----v~~LrpVvmavL 152 (168)
| .|+-.+|..+. +++|.+++.||..++.- ..+--+++++.|++.|-... +.-.+ .+-+||
T Consensus 85 L~~~~AA~VL~~Lp-----------~~~r~dV~~Ria~l~~v-~p~~l~~le~~L~~~l~~~~~~~~~~gG~~-~vA~IL 151 (279)
T 3pkr_A 85 MEAPNAAETLSYFP-----------DEMKAEISIRMANLGEI-SPQVVKRVSTVLENKLESLTSYKIEVGGLR-AVAEIF 151 (279)
T ss_dssp SCHHHHHHHHTTSC-----------HHHHHHHHHHHHTCCCC-CHHHHHHHHHHHHHHHHTCC---CCCCSHH-HHHHHH
T ss_pred CCHHHHHHHHHHCC-----------HHHHHHHHHHHHccCCC-CHHHHHHHHHHHHHHHHhccccccccCcHH-HHHHHH
Confidence 3 23434444443 67899999999998842 33456778888888765432 11122 344666
Q ss_pred hcCC
Q psy4196 153 RNTT 156 (168)
Q Consensus 153 ~~~~ 156 (168)
.+++
T Consensus 152 N~~d 155 (279)
T 3pkr_A 152 NRLG 155 (279)
T ss_dssp HTSC
T ss_pred HcCC
Confidence 6665
No 4
>2vkc_A NEDD4-binding protein 2; human BCL3 binding protein, alternative splicing, homologous recombination, mismatch repair, small MUTS related; NMR {Homo sapiens}
Probab=30.77 E-value=1.1e+02 Score=22.37 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=16.6
Q ss_pred ccccCCchhhhHHHHHHHHHHHH
Q psy4196 87 LDLHGVRRLDFHNSVLEELRDKL 109 (168)
Q Consensus 87 ld~hgVrRldfh~svle~Lr~~L 109 (168)
||+||.+..+....+.+.|.+..
T Consensus 56 LDLHGl~v~EA~~~L~~fL~~a~ 78 (135)
T 2vkc_A 56 LDLHGLHVDEALEHLMRVLEKKT 78 (135)
T ss_dssp EECTTCCHHHHHHHHHHHHHHHH
T ss_pred EEeCCCcHHHHHHHHHHHHHHHH
Confidence 56688888888877776666543
No 5
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=25.96 E-value=50 Score=22.86 Aligned_cols=26 Identities=23% Similarity=0.506 Sum_probs=22.6
Q ss_pred CcHHHHHHHhhcCCCHHHHHHHHHHh
Q psy4196 10 PGQNFLREALTSCTDPLKAIEEFQLD 35 (168)
Q Consensus 10 ~G~~~lreaLs~~tdPl~aIe~FQ~e 35 (168)
.|..++-+|++-|.+|.+-|.-||+-
T Consensus 35 ~~~~hf~nAl~Vc~qP~~LL~i~q~t 60 (73)
T 3ax2_A 35 KGVDHLTNAIAVCGQPQQLLQVLQQT 60 (73)
T ss_dssp HHHHHHHHHHHTCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 45667899999999999999999964
No 6
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=24.07 E-value=50 Score=21.88 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=17.8
Q ss_pred ccccCCchhhhHHHHHHHHHHHH
Q psy4196 87 LDLHGVRRLDFHNSVLEELRDKL 109 (168)
Q Consensus 87 ld~hgVrRldfh~svle~Lr~~L 109 (168)
||+||.+..+....+-+.|.+..
T Consensus 3 lDLHGl~v~eA~~~l~~~l~~~~ 25 (82)
T 3fau_A 3 LDLHGLHVDEALEHLMRVLEKKT 25 (82)
T ss_dssp EECTTSCHHHHHHHHHHHHHHHH
T ss_pred EECCCCcHHHHHHHHHHHHHHHH
Confidence 68899999998887777666543
No 7
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}
Probab=23.59 E-value=63 Score=19.30 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=16.7
Q ss_pred HHHHhhcCCCHHHHHHHHHHh
Q psy4196 15 LREALTSCTDPLKAIEEFQLD 35 (168)
Q Consensus 15 lreaLs~~tdPl~aIe~FQ~e 35 (168)
+--++-++|||...+.-|+.-
T Consensus 8 lfGAiis~TDpVavlaif~~~ 28 (33)
T 2l0e_A 8 LFGSIISAVDPVAVLAVFEEI 28 (33)
T ss_dssp TTHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHccCCChHHHHHHHHHc
Confidence 345677899999999999864
No 8
>1lbu_A Muramoyl-pentapeptide carboxypeptidase; hydrolase, nuclear receptor; 1.80A {Streptomyces albus} SCOP: a.20.1.1 d.65.1.1
Probab=23.43 E-value=35 Score=26.10 Aligned_cols=14 Identities=29% Similarity=0.458 Sum_probs=12.4
Q ss_pred HHHHHHHHHhcCcc
Q psy4196 26 LKAIEEFQLDNGIL 39 (168)
Q Consensus 26 l~aIe~FQ~eNgIl 39 (168)
.+|++.||.++|+.
T Consensus 47 ~~AV~~FQ~~~gL~ 60 (213)
T 1lbu_A 47 KAAVQRFQSAYGLA 60 (213)
T ss_dssp HHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHcCCC
Confidence 59999999999964
No 9
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=21.38 E-value=87 Score=17.76 Aligned_cols=27 Identities=22% Similarity=0.094 Sum_probs=18.0
Q ss_pred ccccCCCcHHHHHHHhhcCC-CHHHHHHH
Q psy4196 4 LEESGIPGQNFLREALTSCT-DPLKAIEE 31 (168)
Q Consensus 4 le~~Gi~G~~~lreaLs~~t-dPl~aIe~ 31 (168)
|.+.|++.... +.||..|. |+..|++-
T Consensus 11 L~~mGf~~~~a-~~AL~~~~~n~e~A~~~ 38 (40)
T 1z96_A 11 LVSMGFDPLEA-AQALDAANGDLDVAASF 38 (40)
T ss_dssp HHHTTCCHHHH-HHHHHHTTTCHHHHHHH
T ss_pred HHHcCCCHHHH-HHHHHHcCCCHHHHHHH
Confidence 56778876555 55666665 67788764
No 10
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=20.94 E-value=68 Score=21.84 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=20.6
Q ss_pred ccccCCchhhhHHHHHHHHHHHHHHHHHHh
Q psy4196 87 LDLHGVRRLDFHNSVLEELRDKLVSHIKEI 116 (168)
Q Consensus 87 ld~hgVrRldfh~svle~Lr~~Ll~~I~~l 116 (168)
||+||.+..+....+-+.+.+-....+..+
T Consensus 7 lDLhG~~~~eA~~~l~~fl~~a~~~g~~~v 36 (83)
T 2zqe_A 7 VDLRGLTVAEALLEVDQALEEARALGLSTL 36 (83)
T ss_dssp EECTTCCHHHHHHHHHHHHHHHHHTTCSEE
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHCCCCEE
Confidence 777888877777777777766665544443
No 11
>4dhx_B Enhancer of yellow 2 transcription factor homolog, 80 kDa MCM3-associated protein; mRNA export, transport protein-DNA binding protein complex; 2.10A {Homo sapiens}
Probab=20.94 E-value=2.2e+02 Score=20.49 Aligned_cols=61 Identities=20% Similarity=0.442 Sum_probs=37.8
Q ss_pred HHHHHHhhcCC--C-HHHHHHHHHHhcCccccchhhhccccccccccccccccchhHHHHHHHhhhhhhhhhhhcccccc
Q psy4196 13 NFLREALTSCT--D-PLKAIEEFQLDNGILLPSLRQMLPLLDLHGVRRLDFHNSVLEVEVTETLNLLLPSLRQMLPLLDL 89 (168)
Q Consensus 13 ~~lreaLs~~t--d-Pl~aIe~FQ~eNgIlLpsl~~~LpLLDL~~vr~~~~~~s~~~~e~~~t~~~~~p~~~~~~~lld~ 89 (168)
+.|++-|..|- | .-+.++++=.++|+..+++... +.-++|.-|.++|
T Consensus 31 ~lL~~rL~EcGW~Devr~~~r~~i~~~g~~~vt~~~L--------------------------~~~I~P~Ar~~VP---- 80 (101)
T 4dhx_B 31 ELLRAKLIECGWKDQLKAHCKEVIKEKGLEHVTVDDL--------------------------VAEITPKGRALVP---- 80 (101)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHCTTTCCHHHH--------------------------HHHHHHHHHHHSC----
T ss_pred HHHHHHHHHCCcHHHHHHHHHHHHHHcCCCCCCHHHH--------------------------HHHHhHHHHHHCC----
Confidence 34455555552 2 2345566666667655555444 3447888888888
Q ss_pred cCCchhhhHHHHHHHHHHHHHHHHHHh
Q psy4196 90 HGVRRLDFHNSVLEELRDKLVSHIKEI 116 (168)
Q Consensus 90 hgVrRldfh~svle~Lr~~Ll~~I~~l 116 (168)
++.|.+++.+|.++
T Consensus 81 -------------~~VK~Ell~rIr~f 94 (101)
T 4dhx_B 81 -------------DSVKKELLQRIRTF 94 (101)
T ss_dssp -------------HHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHH
Confidence 67788888888764
No 12
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.57 E-value=37 Score=20.68 Aligned_cols=28 Identities=25% Similarity=0.234 Sum_probs=19.7
Q ss_pred ccccCCCcHHHHHHHhhcCCCHHHHHHHH
Q psy4196 4 LEESGIPGQNFLREALTSCTDPLKAIEEF 32 (168)
Q Consensus 4 le~~Gi~G~~~lreaLs~~tdPl~aIe~F 32 (168)
|.+.|++- +..+.||..|-|+..|++-+
T Consensus 16 L~~MGF~~-~~a~~AL~~~~n~e~A~~~L 43 (47)
T 2ekk_A 16 LMDMGFTR-EHAMEALLNTSTMEQATEYL 43 (47)
T ss_dssp HHHHHCCH-HHHHHHHHHSCSHHHHHHHH
T ss_pred HHHcCCCH-HHHHHHHHHcCCHHHHHHHH
Confidence 55678877 55556777777888888754
Done!