Query psy4196
Match_columns 168
No_of_seqs 36 out of 38
Neff 2.5
Searched_HMMs 13730
Date Fri Aug 16 19:18:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4196.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4196hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1lbua1 a.20.1.1 (A:1-83) Zn2+ 51.0 3.3 0.00024 26.4 1.7 14 26-39 47-60 (83)
2 d2fiya1 e.59.1.1 (A:19-308) Fd 24.1 22 0.0016 27.9 2.9 71 81-152 64-142 (290)
3 d2bbya_ a.4.5.15 (A:) DNA-bind 24.0 29 0.0021 22.5 3.0 34 126-167 7-43 (69)
4 d1oqya1 a.5.2.1 (A:160-200) DN 19.1 37 0.0027 19.5 2.4 27 4-30 11-37 (41)
5 d2d9ia1 d.68.8.1 (A:8-90) Nedd 18.7 35 0.0026 21.2 2.5 22 86-107 3-24 (83)
6 d1x9ga_ c.33.1.3 (A:) Ribonucl 17.5 56 0.0041 22.5 3.6 52 86-137 130-189 (192)
7 d1om2a_ a.23.4.1 (A:) Mitochon 15.4 43 0.0031 22.7 2.4 25 11-35 39-63 (95)
8 d1sgma2 a.121.1.1 (A:78-188) P 14.5 35 0.0025 21.0 1.6 13 23-35 1-13 (111)
9 d1su3a1 a.20.1.2 (A:32-98) Fib 14.4 38 0.0027 21.2 1.7 19 21-39 25-43 (67)
10 d1l6ja1 a.20.1.2 (A:29-105) Ge 14.0 37 0.0027 21.5 1.6 15 25-39 39-53 (77)
No 1
>d1lbua1 a.20.1.1 (A:1-83) Zn2+ DD-carboxypeptidase, N-terminal domain {Streptomyces albus G [TaxId: 1962]}
Probab=50.99 E-value=3.3 Score=26.45 Aligned_cols=14 Identities=29% Similarity=0.458 Sum_probs=12.5
Q ss_pred HHHHHHHHHhcCcc
Q psy4196 26 LKAIEEFQLDNGIL 39 (168)
Q Consensus 26 l~aIe~FQ~eNgIl 39 (168)
.+|++.||.+||+.
T Consensus 47 ~~AV~~FQ~~~gL~ 60 (83)
T d1lbua1 47 KAAVQRFQSAYGLA 60 (83)
T ss_dssp HHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHcCCC
Confidence 48999999999975
No 2
>d2fiya1 e.59.1.1 (A:19-308) FdhE homolog PA4809 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=24.07 E-value=22 Score=27.86 Aligned_cols=71 Identities=20% Similarity=0.203 Sum_probs=49.6
Q ss_pred hhhcccccccCCchhhhHHHHHHHHHHHH--------HHHHHHhccccccchHHHHHHHHhhhcCccccCchhHHHHHHH
Q psy4196 81 RQMLPLLDLHGVRRLDFHNSVLEELRDKL--------VSHIKEIGQKEGRDRDRKLNEMLKKSFPLVRVKQLRPVVMAIL 152 (168)
Q Consensus 81 ~~~~~lld~hgVrRldfh~svle~Lr~~L--------l~~I~~l~~~~~~~~~~kL~~lL~kSFp~i~v~~LrpVvmavL 152 (168)
.+-.|+||..+..|...++.+|.++-.++ ...+..+.+....++..-...+|...||.+.. ...+++++-|
T Consensus 64 ~~g~PpL~~~~~~~d~~w~~~L~~ll~~l~~~~~~~~~~~l~~L~~a~~~~l~~~a~alL~g~~~~~~~-~~~~fi~aAL 142 (290)
T d2fiya1 64 EHGMPPLAYDLLVREGAWLPWLDALLAGYPAPANAAVGAALEQLREAEEGQRKAWAIALLSGQFDLLPA-ALVPFLGAAL 142 (290)
T ss_dssp HTTCCTTCHHHHHHHCTTHHHHHHHHHTCCCCSSHHHHHHHHHHHHCCHHHHHHHHHHHHTTCGGGSCG-GGHHHHHHHH
T ss_pred hcCCCCCCccccccCHHHHHHHHHHHHHhcccCCHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCcccch-hHhHHHHHHH
Confidence 36778899999999888888877664433 44455555544456666778889999998876 5556666655
No 3
>d2bbya_ a.4.5.15 (A:) DNA-binding domain from rap30 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.01 E-value=29 Score=22.47 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=23.9
Q ss_pred HHHHHHHhhhc---CccccCchhHHHHHHHhcCCCCcHHHHHhhh
Q psy4196 126 RKLNEMLKKSF---PLVRVKQLRPVVMAILRNTTHIDDKYLRVLV 167 (168)
Q Consensus 126 ~kL~~lL~kSF---p~i~v~~LrpVvmavL~~~~~ip~kyL~~l~ 167 (168)
.+|.++|=+.| ||..+++|+-. +.=|+.||+.++
T Consensus 7 ~~l~d~lF~~Fek~~ywsiK~L~~~--------t~QP~~yLKeiL 43 (69)
T d2bbya_ 7 QHVLDMLFSAFEKHQYYNLKDLVDI--------TKQPVVYLKEIL 43 (69)
T ss_dssp HHHHHHHHHHHHHCSCBCHHHHHHH--------CCSCHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHH--------HhChHHHHHHHH
Confidence 35555555554 88888887765 577999999875
No 4
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.11 E-value=37 Score=19.54 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=20.7
Q ss_pred ccccCCCcHHHHHHHhhcCCCHHHHHH
Q psy4196 4 LEESGIPGQNFLREALTSCTDPLKAIE 30 (168)
Q Consensus 4 le~~Gi~G~~~lreaLs~~tdPl~aIe 30 (168)
|.+.|++-...++.+-.+.-||..|++
T Consensus 11 L~~MGF~~~~a~~AL~~~~~N~e~A~~ 37 (41)
T d1oqya1 11 IMSMGYERERVVAALRASYNNPHRAVE 37 (41)
T ss_dssp HHTTTCCSHHHHHHHHHSCSSTTHHHH
T ss_pred HHHcCCCHHHHHHHHHHhCCCHHHHHH
Confidence 567888887777766666778888886
No 5
>d2d9ia1 d.68.8.1 (A:8-90) Nedd4-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.73 E-value=35 Score=21.17 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=16.1
Q ss_pred cccccCCchhhhHHHHHHHHHH
Q psy4196 86 LLDLHGVRRLDFHNSVLEELRD 107 (168)
Q Consensus 86 lld~hgVrRldfh~svle~Lr~ 107 (168)
.||+||....+..+.+.+.+.+
T Consensus 3 ~iDLHG~~~~eA~~~l~~~l~~ 24 (83)
T d2d9ia1 3 VLDLHGLHVDEALEHLMRVLEK 24 (83)
T ss_dssp EEECTTSCHHHHHHHHHHHHHH
T ss_pred eEECCCCCHHHHHHHHHHHHHH
Confidence 4788999888877766666554
No 6
>d1x9ga_ c.33.1.3 (A:) Ribonuclease MAR1 {Leishmania donovani [TaxId: 5661]}
Probab=17.48 E-value=56 Score=22.52 Aligned_cols=52 Identities=12% Similarity=0.158 Sum_probs=38.2
Q ss_pred cccccCCchhhhHHHHHHHHHHH-----H--H-HHHHHhccccccchHHHHHHHHhhhcC
Q psy4196 86 LLDLHGVRRLDFHNSVLEELRDK-----L--V-SHIKEIGQKEGRDRDRKLNEMLKKSFP 137 (168)
Q Consensus 86 lld~hgVrRldfh~svle~Lr~~-----L--l-~~I~~l~~~~~~~~~~kL~~lL~kSFp 137 (168)
+-|.+|-+-.+.|+..+++|+.. + . .-+-++-....+...++..+++++++|
T Consensus 130 v~Da~~s~~~~~h~~Al~~m~~~G~~~~itt~E~il~~l~~~~~~~~fk~~~~l~k~~~p 189 (192)
T d1x9ga_ 130 PKDGLGSQKKTDFKAAIKLMSSWGPNCEITTSESILLQMTKDAMDPNFKRISKLLKEEPP 189 (192)
T ss_dssp EGGGEECSSHHHHHHHHHHHHTSCSSEEEECHHHHHHHHSCCTTCTTHHHHHHHTTCCCS
T ss_pred eCcccCCCCHHHHHHHHHHHHHhCCCeEEecHHHHHHHHhhhcCCccHHHHHHHHhhcCC
Confidence 35888888899999999999862 1 1 113466666667778888888888887
No 7
>d1om2a_ a.23.4.1 (A:) Mitochondrial import receptor subunit Tom20 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=15.40 E-value=43 Score=22.69 Aligned_cols=25 Identities=24% Similarity=0.534 Sum_probs=22.4
Q ss_pred cHHHHHHHhhcCCCHHHHHHHHHHh
Q psy4196 11 GQNFLREALTSCTDPLKAIEEFQLD 35 (168)
Q Consensus 11 G~~~lreaLs~~tdPl~aIe~FQ~e 35 (168)
|-.++-+|++-|.+|-+-+.-||.-
T Consensus 39 g~~h~~nAi~Vc~qP~~LL~ilq~t 63 (95)
T d1om2a_ 39 GVDHLTNAIAVCGQPQQLLQVLQQT 63 (95)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 6678899999999999999999975
No 8
>d1sgma2 a.121.1.1 (A:78-188) Putative transcriptional regulator YxaF {Bacillus subtilis [TaxId: 1423]}
Probab=14.47 E-value=35 Score=20.98 Aligned_cols=13 Identities=38% Similarity=0.657 Sum_probs=10.5
Q ss_pred CCHHHHHHHHHHh
Q psy4196 23 TDPLKAIEEFQLD 35 (168)
Q Consensus 23 tdPl~aIe~FQ~e 35 (168)
+||+++|+.|=..
T Consensus 1 sdP~e~l~~~~~~ 13 (111)
T d1sgma2 1 SDPVEAIQLFIKK 13 (111)
T ss_dssp SSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 6999999988654
No 9
>d1su3a1 a.20.1.2 (A:32-98) Fibroblast collagenase (MMP-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.38 E-value=38 Score=21.15 Aligned_cols=19 Identities=11% Similarity=0.123 Sum_probs=13.7
Q ss_pred cCCCHHHHHHHHHHhcCcc
Q psy4196 21 SCTDPLKAIEEFQLDNGIL 39 (168)
Q Consensus 21 ~~tdPl~aIe~FQ~eNgIl 39 (168)
+..+-.+||++||.-.|+.
T Consensus 25 ~~~~~~~Aik~fQ~f~~L~ 43 (67)
T d1su3a1 25 NSGPVVEKLKQMQEFFGLK 43 (67)
T ss_dssp --CHHHHHHHHHHHHTTCC
T ss_pred chHHHHHHHHHHHHHcCCC
Confidence 3444568999999998865
No 10
>d1l6ja1 a.20.1.2 (A:29-105) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.96 E-value=37 Score=21.47 Aligned_cols=15 Identities=13% Similarity=-0.137 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhcCcc
Q psy4196 25 PLKAIEEFQLDNGIL 39 (168)
Q Consensus 25 Pl~aIe~FQ~eNgIl 39 (168)
-.+||++||.-.|+.
T Consensus 39 ~~~AIk~fQ~f~gL~ 53 (77)
T d1l6ja1 39 LGPALLLLQKQLSLP 53 (77)
T ss_dssp CHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHcCCC
Confidence 458999999998865
Done!