Your job contains 1 sequence.
>psy4196
MSGLEESGIPGQNFLREALTSCTDPLKAIEEFQLDNGILLPSLRQMLPLLDLHGVRRLDF
HNSVLEVEVTETLNLLLPSLRQMLPLLDLHGVRRLDFHNSVLEELRDKLVSHIKEIGQKE
GRDRDRKLNEMLKKSFPLVRVKQLRPVVMAILRNTTHIDDKYLRVLVS
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy4196
(168 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0027553 - symbol:NELF-B "NELF-B" species:7227 "Dro... 322 4.4e-46 2
ZFIN|ZDB-GENE-040426-765 - symbol:nelfb "negative elongat... 182 3.6e-25 2
UNIPROTKB|F1RVX9 - symbol:COBRA1 "Uncharacterized protein... 174 1.9e-24 2
UNIPROTKB|D4A2H9 - symbol:Cobra1 "Protein Cobra1" species... 160 2.4e-24 2
UNIPROTKB|G5E5S2 - symbol:COBRA1 "Uncharacterized protein... 171 4.1e-24 2
UNIPROTKB|E2QX07 - symbol:COBRA1 "Uncharacterized protein... 171 4.1e-24 2
UNIPROTKB|Q8WX92 - symbol:NELFB "Negative elongation fact... 171 4.1e-24 2
MGI|MGI:1931035 - symbol:Nelfb "negative elongation facto... 171 4.1e-24 2
RGD|1307832 - symbol:Nelfb "negative elongation factor co... 171 4.1e-24 2
UNIPROTKB|Q5ZLK9 - symbol:COBRA1 "Uncharacterized protein... 163 1.4e-23 2
UNIPROTKB|F1P5D4 - symbol:COBRA1 "Uncharacterized protein... 163 1.5e-23 2
>FB|FBgn0027553 [details] [associations]
symbol:NELF-B "NELF-B" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0007070 "negative
regulation of transcription from RNA polymerase II promoter during
mitosis" evidence=ISS] [GO:0017053 "transcriptional repressor
complex" evidence=ISS] [GO:0032021 "NELF complex" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0034244 "negative
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IDA] InterPro:IPR010405 Pfam:PF06209
GO:GO:0017053 GO:GO:0005694 EMBL:AE014298 GO:GO:0006351
GO:GO:0003723 GO:GO:0034244 GO:GO:0007070 GO:GO:0032021
EMBL:AF145659 RefSeq:NP_572402.1 UniGene:Dm.3142 DIP:DIP-59537N
STRING:Q9Y113 PaxDb:Q9Y113 PRIDE:Q9Y113 EnsemblMetazoa:FBtr0071077
GeneID:31681 KEGG:dme:Dmel_CG32721 UCSC:CG32721-RA CTD:31681
FlyBase:FBgn0027553 eggNOG:NOG69243 GeneTree:ENSGT00390000012665
InParanoid:Q9Y113 KO:K15180 OMA:EQLDHRK OrthoDB:EOG4N5TBZ
PhylomeDB:Q9Y113 GenomeRNAi:31681 NextBio:774804 Bgee:Q9Y113
GermOnline:CG32721 PANTHER:PTHR13503 Uniprot:Q9Y113
Length = 594
Score = 322 (118.4 bits), Expect = 4.4e-46, Sum P(2) = 4.4e-46
Identities = 60/78 (76%), Positives = 71/78 (91%)
Query: 90 HGVRRLDFHNSVLEELRDKLVSHIKEIGQKEGRDRDRKLNEMLKKSFPLVRVKQLRPVVM 149
HGVRRLDFH S++EELRDKL++HI E+GQKE R+RD+KL E+L KSFP+VRVK LRPVVM
Sbjct: 64 HGVRRLDFHTSLMEELRDKLIAHINEMGQKEPRERDKKLKELLVKSFPVVRVKSLRPVVM 123
Query: 150 AILRNTTHIDDKYLRVLV 167
AILRNT HIDDKYL++LV
Sbjct: 124 AILRNTQHIDDKYLKILV 141
Score = 191 (72.3 bits), Expect = 4.4e-46, Sum P(2) = 4.4e-46
Identities = 38/62 (61%), Positives = 43/62 (69%)
Query: 2 SGLEESGIPGQNFLREALTSCTDPLKAIEEFQLDNGIXXXXXXXXXXXXXXHGVRRLDFH 61
+GLE+ IPGQ +LREALTSCTDPLKAIE FQL+NG+ HGVRRLDFH
Sbjct: 13 TGLEDVNIPGQAYLREALTSCTDPLKAIESFQLENGVLLPSLRPMLPLLDLHGVRRLDFH 72
Query: 62 NS 63
S
Sbjct: 73 TS 74
>ZFIN|ZDB-GENE-040426-765 [details] [associations]
symbol:nelfb "negative elongation factor complex
member B" species:7955 "Danio rerio" [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR010405 Pfam:PF06209
ZFIN:ZDB-GENE-040426-765 GO:GO:0005634 GO:GO:0045892
eggNOG:NOG69243 PANTHER:PTHR13503 HOGENOM:HOG000231489
HOVERGEN:HBG052596 EMBL:AY391416 IPI:IPI00509943 UniGene:Dr.79678
STRING:Q6TNV1 PRIDE:Q6TNV1 NextBio:20814209 ArrayExpress:Q6TNV1
Bgee:Q6TNV1 Uniprot:Q6TNV1
Length = 594
Score = 182 (69.1 bits), Expect = 3.6e-25, Sum P(2) = 3.6e-25
Identities = 34/79 (43%), Positives = 55/79 (69%)
Query: 90 HGVRRLDFHNSVLEELRDKLVSHIKEIGQKEGRDRDRKLNEMLKKSFPLVRVKQLRPVVM 149
HG RL+FH SV +ELRDKL+ + I + + DR KL E+L+KSFPLV++ ++PVVM
Sbjct: 54 HGTPRLEFHQSVFDELRDKLMERVATIAEGKEEDRYVKLEELLEKSFPLVKMPSIQPVVM 113
Query: 150 AILRNTTHIDDKYLRVLVS 168
+L++ + +K L+ +++
Sbjct: 114 QVLKHLPKVPEKKLKQVMA 132
Score = 138 (53.6 bits), Expect = 3.6e-25, Sum P(2) = 3.6e-25
Identities = 28/62 (45%), Positives = 36/62 (58%)
Query: 2 SGLEESGIPGQNFLREALTSCTDPLKAIEEFQLDNGIXXXXXXXXXXXXXXHGVRRLDFH 61
+GL E GI L+E LT+CT+PLKAI++FQ +NGI HG RL+FH
Sbjct: 3 AGLPELGISNGEDLKETLTNCTEPLKAIDQFQTENGILLPTLQSALPFLDLHGTPRLEFH 62
Query: 62 NS 63
S
Sbjct: 63 QS 64
>UNIPROTKB|F1RVX9 [details] [associations]
symbol:COBRA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0032021 "NELF complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR010405
Pfam:PF06209 GO:GO:0005737 GO:GO:0045892 GO:GO:0032021
GeneTree:ENSGT00390000012665 KO:K15180 OMA:EQLDHRK
PANTHER:PTHR13503 CTD:25920 EMBL:CU928955 RefSeq:XP_003122390.1
UniGene:Ssc.4220 Ensembl:ENSSSCT00000006425 GeneID:100514560
KEGG:ssc:100514560 Uniprot:F1RVX9
Length = 580
Score = 174 (66.3 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
Identities = 32/80 (40%), Positives = 56/80 (70%)
Query: 90 HGVRRLDFHNSVLEELRDKLVSHIKEIGQK-EGRDRDRKLNEMLKKSFPLVRVKQLRPVV 148
HG RL+FH SV +ELRDKL+ + I + + +R +KL E+L+KSF LV++ L+PVV
Sbjct: 54 HGTPRLEFHQSVFDELRDKLLERVSAIASEGKAEERYKKLEELLEKSFSLVKMPSLQPVV 113
Query: 149 MAILRNTTHIDDKYLRVLVS 168
M ++++ + +K L+++++
Sbjct: 114 MCVMKHLPKVPEKKLKLVMA 133
Score = 139 (54.0 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
Identities = 26/62 (41%), Positives = 37/62 (59%)
Query: 2 SGLEESGIPGQNFLREALTSCTDPLKAIEEFQLDNGIXXXXXXXXXXXXXXHGVRRLDFH 61
+GL++ G+ L+E LT+CT+PLKAIE+FQ +NG+ HG RL+FH
Sbjct: 3 AGLQDLGVANGEDLKETLTNCTEPLKAIEQFQTENGVLLPSLQSALPFLDLHGTPRLEFH 62
Query: 62 NS 63
S
Sbjct: 63 QS 64
>UNIPROTKB|D4A2H9 [details] [associations]
symbol:Cobra1 "Protein Cobra1" species:10116 "Rattus
norvegicus" [GO:0005634 "nucleus" evidence=IEA] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR010405 Pfam:PF06209 RGD:1307832 GO:GO:0005634
GO:GO:0045892 PANTHER:PTHR13503 IPI:IPI00947907
Ensembl:ENSRNOT00000064440 ArrayExpress:D4A2H9 Uniprot:D4A2H9
Length = 286
Score = 160 (61.4 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
Identities = 30/78 (38%), Positives = 52/78 (66%)
Query: 90 HGVRRLDFHNSVLEELRDKLVSHIKEIGQK-EGRDRDRKLNEMLKKSFPLVRVKQLRPVV 148
HG RL+FH SV +ELRDKL+ + I + + +R +KL ++L+KSF LV++ L+PVV
Sbjct: 54 HGTPRLEFHQSVFDELRDKLLERVSAIASEGKAEERYKKLEDLLEKSFSLVKMPSLQPVV 113
Query: 149 MAILRNTTHIDDKYLRVL 166
M ++++ + K +++
Sbjct: 114 MCVMKHLPKVVQKLTQMV 131
Score = 139 (54.0 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
Identities = 26/62 (41%), Positives = 37/62 (59%)
Query: 2 SGLEESGIPGQNFLREALTSCTDPLKAIEEFQLDNGIXXXXXXXXXXXXXXHGVRRLDFH 61
+GL++ G+ L+E LT+CT+PLKAIE+FQ +NG+ HG RL+FH
Sbjct: 3 AGLQDLGVANGEDLKETLTNCTEPLKAIEQFQTENGVLLPSLQSALPFLDLHGTPRLEFH 62
Query: 62 NS 63
S
Sbjct: 63 QS 64
>UNIPROTKB|G5E5S2 [details] [associations]
symbol:COBRA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0032021 "NELF complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR010405
Pfam:PF06209 GO:GO:0005737 GO:GO:0045892 GO:GO:0032021
GeneTree:ENSGT00390000012665 OMA:EQLDHRK PANTHER:PTHR13503
EMBL:DAAA02032403 Ensembl:ENSBTAT00000029144 Uniprot:G5E5S2
Length = 580
Score = 171 (65.3 bits), Expect = 4.1e-24, Sum P(2) = 4.1e-24
Identities = 31/80 (38%), Positives = 56/80 (70%)
Query: 90 HGVRRLDFHNSVLEELRDKLVSHIKEIGQK-EGRDRDRKLNEMLKKSFPLVRVKQLRPVV 148
HG RL+FH SV +ELRDKL+ + I + + +R +KL ++L+KSF LV++ L+PVV
Sbjct: 54 HGTPRLEFHQSVFDELRDKLLERVSAIASEGKAEERYKKLEDLLEKSFSLVKMPSLQPVV 113
Query: 149 MAILRNTTHIDDKYLRVLVS 168
M ++++ + +K L+++++
Sbjct: 114 MCVMKHLPKVPEKKLKLVMA 133
Score = 139 (54.0 bits), Expect = 4.1e-24, Sum P(2) = 4.1e-24
Identities = 26/62 (41%), Positives = 37/62 (59%)
Query: 2 SGLEESGIPGQNFLREALTSCTDPLKAIEEFQLDNGIXXXXXXXXXXXXXXHGVRRLDFH 61
+GL++ G+ L+E LT+CT+PLKAIE+FQ +NG+ HG RL+FH
Sbjct: 3 AGLQDLGVANGEDLKETLTNCTEPLKAIEQFQTENGVLLPSLQSALPFLDLHGTPRLEFH 62
Query: 62 NS 63
S
Sbjct: 63 QS 64
>UNIPROTKB|E2QX07 [details] [associations]
symbol:COBRA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0032021 "NELF complex" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR010405 Pfam:PF06209 GO:GO:0005737 GO:GO:0045892
GO:GO:0032021 GeneTree:ENSGT00390000012665 KO:K15180 OMA:EQLDHRK
PANTHER:PTHR13503 CTD:25920 EMBL:AAEX03006730 EMBL:AAEX03006731
RefSeq:XP_548351.2 Ensembl:ENSCAFT00000030929 GeneID:491230
KEGG:cfa:491230 NextBio:20864107 Uniprot:E2QX07
Length = 580
Score = 171 (65.3 bits), Expect = 4.1e-24, Sum P(2) = 4.1e-24
Identities = 31/80 (38%), Positives = 56/80 (70%)
Query: 90 HGVRRLDFHNSVLEELRDKLVSHIKEIGQK-EGRDRDRKLNEMLKKSFPLVRVKQLRPVV 148
HG RL+FH SV +ELRDKL+ + I + + +R +KL ++L+KSF LV++ L+PVV
Sbjct: 54 HGTPRLEFHQSVFDELRDKLLERVSAIASEGKAEERYKKLEDLLEKSFSLVKMPSLQPVV 113
Query: 149 MAILRNTTHIDDKYLRVLVS 168
M ++++ + +K L+++++
Sbjct: 114 MCVMKHLPKVPEKKLKLVMA 133
Score = 139 (54.0 bits), Expect = 4.1e-24, Sum P(2) = 4.1e-24
Identities = 26/62 (41%), Positives = 37/62 (59%)
Query: 2 SGLEESGIPGQNFLREALTSCTDPLKAIEEFQLDNGIXXXXXXXXXXXXXXHGVRRLDFH 61
+GL++ G+ L+E LT+CT+PLKAIE+FQ +NG+ HG RL+FH
Sbjct: 3 AGLQDLGVANGEDLKETLTNCTEPLKAIEQFQTENGVLLPSLQSALPFLDLHGTPRLEFH 62
Query: 62 NS 63
S
Sbjct: 63 QS 64
>UNIPROTKB|Q8WX92 [details] [associations]
symbol:NELFB "Negative elongation factor B" species:9606
"Homo sapiens" [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0032021 "NELF complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR010405
Pfam:PF06209 GO:GO:0005737 Reactome:REACT_116125 GO:GO:0045892
GO:GO:0016032 GO:GO:0006368 Reactome:REACT_1788 GO:GO:0050434
Reactome:REACT_1892 EMBL:BX255925 GO:GO:0032021 eggNOG:NOG69243
KO:K15180 OMA:EQLDHRK PANTHER:PTHR13503 EMBL:AF464935 EMBL:AK022651
EMBL:AK091056 EMBL:BC011892 EMBL:AL050280 EMBL:AB033008
IPI:IPI00103483 PIR:T08747 RefSeq:NP_056271.2 UniGene:Hs.521809
ProteinModelPortal:Q8WX92 DIP:DIP-32670N IntAct:Q8WX92
MINT:MINT-1033357 STRING:Q8WX92 PhosphoSite:Q8WX92 DMDM:38372378
PaxDb:Q8WX92 PeptideAtlas:Q8WX92 PRIDE:Q8WX92 DNASU:25920
Ensembl:ENST00000343053 GeneID:25920 KEGG:hsa:25920 UCSC:uc004cmm.4
CTD:25920 GeneCards:GC09P140149 HGNC:HGNC:24324 HPA:HPA020259
MIM:611180 neXtProt:NX_Q8WX92 PharmGKB:PA162382703
HOGENOM:HOG000231489 HOVERGEN:HBG052596 InParanoid:Q8WX92
OrthoDB:EOG4MGS77 PhylomeDB:Q8WX92 ChiTaRS:COBRA1 GenomeRNAi:25920
NextBio:47437 Bgee:Q8WX92 CleanEx:HS_COBRA1 Genevestigator:Q8WX92
GermOnline:ENSG00000188986 Uniprot:Q8WX92
Length = 580
Score = 171 (65.3 bits), Expect = 4.1e-24, Sum P(2) = 4.1e-24
Identities = 31/80 (38%), Positives = 56/80 (70%)
Query: 90 HGVRRLDFHNSVLEELRDKLVSHIKEIGQK-EGRDRDRKLNEMLKKSFPLVRVKQLRPVV 148
HG RL+FH SV +ELRDKL+ + I + + +R +KL ++L+KSF LV++ L+PVV
Sbjct: 54 HGTPRLEFHQSVFDELRDKLLERVSAIASEGKAEERYKKLEDLLEKSFSLVKMPSLQPVV 113
Query: 149 MAILRNTTHIDDKYLRVLVS 168
M ++++ + +K L+++++
Sbjct: 114 MCVMKHLPKVPEKKLKLVMA 133
Score = 139 (54.0 bits), Expect = 4.1e-24, Sum P(2) = 4.1e-24
Identities = 26/62 (41%), Positives = 37/62 (59%)
Query: 2 SGLEESGIPGQNFLREALTSCTDPLKAIEEFQLDNGIXXXXXXXXXXXXXXHGVRRLDFH 61
+GL++ G+ L+E LT+CT+PLKAIE+FQ +NG+ HG RL+FH
Sbjct: 3 AGLQDLGVANGEDLKETLTNCTEPLKAIEQFQTENGVLLPSLQSALPFLDLHGTPRLEFH 62
Query: 62 NS 63
S
Sbjct: 63 QS 64
>MGI|MGI:1931035 [details] [associations]
symbol:Nelfb "negative elongation factor complex member B,
Cobra1" species:10090 "Mus musculus" [GO:0005634 "nucleus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0032021 "NELF complex"
evidence=ISO] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR010405 Pfam:PF06209
MGI:MGI:1931035 GO:GO:0005737 GO:GO:0045892 GO:GO:0006351
GO:GO:0032021 eggNOG:NOG69243 GeneTree:ENSGT00390000012665
KO:K15180 OMA:EQLDHRK PANTHER:PTHR13503 CTD:25920
HOGENOM:HOG000231489 HOVERGEN:HBG052596 OrthoDB:EOG4MGS77
EMBL:AB041607 EMBL:BC004762 EMBL:AK080419 IPI:IPI00277028
RefSeq:NP_067368.2 UniGene:Mm.116418 STRING:Q8C4Y3
PhosphoSite:Q8C4Y3 PaxDb:Q8C4Y3 PRIDE:Q8C4Y3
Ensembl:ENSMUST00000059849 GeneID:58202 KEGG:mmu:58202
InParanoid:Q8C4Y3 NextBio:314181 Bgee:Q8C4Y3 CleanEx:MM_COBRA1
Genevestigator:Q8C4Y3 GermOnline:ENSMUSG00000013465 Uniprot:Q8C4Y3
Length = 580
Score = 171 (65.3 bits), Expect = 4.1e-24, Sum P(2) = 4.1e-24
Identities = 31/80 (38%), Positives = 56/80 (70%)
Query: 90 HGVRRLDFHNSVLEELRDKLVSHIKEIGQK-EGRDRDRKLNEMLKKSFPLVRVKQLRPVV 148
HG RL+FH SV +ELRDKL+ + I + + +R +KL ++L+KSF LV++ L+PVV
Sbjct: 54 HGTPRLEFHQSVFDELRDKLLERVSAIASEGKAEERYKKLEDLLEKSFSLVKMPSLQPVV 113
Query: 149 MAILRNTTHIDDKYLRVLVS 168
M ++++ + +K L+++++
Sbjct: 114 MCVMKHLPKVPEKKLKLVMA 133
Score = 139 (54.0 bits), Expect = 4.1e-24, Sum P(2) = 4.1e-24
Identities = 26/62 (41%), Positives = 37/62 (59%)
Query: 2 SGLEESGIPGQNFLREALTSCTDPLKAIEEFQLDNGIXXXXXXXXXXXXXXHGVRRLDFH 61
+GL++ G+ L+E LT+CT+PLKAIE+FQ +NG+ HG RL+FH
Sbjct: 3 AGLQDLGVANGEDLKETLTNCTEPLKAIEQFQTENGVLLPSLQSALPFLDLHGTPRLEFH 62
Query: 62 NS 63
S
Sbjct: 63 QS 64
>RGD|1307832 [details] [associations]
symbol:Nelfb "negative elongation factor complex member B"
species:10116 "Rattus norvegicus" [GO:0003746 "translation
elongation factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0032021
"NELF complex" evidence=IEA;ISO] [GO:0045892 "negative regulation
of transcription, DNA-dependent" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR010405 Pfam:PF06209
RGD:1307832 GO:GO:0005737 GO:GO:0045892 GO:GO:0003746 EMBL:CH474001
GO:GO:0032021 GeneTree:ENSGT00390000012665 KO:K15180 OMA:EQLDHRK
PANTHER:PTHR13503 CTD:25920 OrthoDB:EOG4MGS77 IPI:IPI00371908
RefSeq:NP_001101287.2 UniGene:Rn.8119 Ensembl:ENSRNOT00000012978
GeneID:311796 KEGG:rno:311796 UCSC:RGD:1307832 NextBio:664182
Uniprot:D4ACV0
Length = 580
Score = 171 (65.3 bits), Expect = 4.1e-24, Sum P(2) = 4.1e-24
Identities = 31/80 (38%), Positives = 56/80 (70%)
Query: 90 HGVRRLDFHNSVLEELRDKLVSHIKEIGQK-EGRDRDRKLNEMLKKSFPLVRVKQLRPVV 148
HG RL+FH SV +ELRDKL+ + I + + +R +KL ++L+KSF LV++ L+PVV
Sbjct: 54 HGTPRLEFHQSVFDELRDKLLERVSAIASEGKAEERYKKLEDLLEKSFSLVKMPSLQPVV 113
Query: 149 MAILRNTTHIDDKYLRVLVS 168
M ++++ + +K L+++++
Sbjct: 114 MCVMKHLPKVPEKKLKLVMA 133
Score = 139 (54.0 bits), Expect = 4.1e-24, Sum P(2) = 4.1e-24
Identities = 26/62 (41%), Positives = 37/62 (59%)
Query: 2 SGLEESGIPGQNFLREALTSCTDPLKAIEEFQLDNGIXXXXXXXXXXXXXXHGVRRLDFH 61
+GL++ G+ L+E LT+CT+PLKAIE+FQ +NG+ HG RL+FH
Sbjct: 3 AGLQDLGVANGEDLKETLTNCTEPLKAIEQFQTENGVLLPSLQSALPFLDLHGTPRLEFH 62
Query: 62 NS 63
S
Sbjct: 63 QS 64
>UNIPROTKB|Q5ZLK9 [details] [associations]
symbol:COBRA1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0032021 "NELF complex" evidence=IEA] InterPro:IPR010405
Pfam:PF06209 GO:GO:0005737 GO:GO:0045892 GO:GO:0032021
eggNOG:NOG69243 GeneTree:ENSGT00390000012665 KO:K15180
PANTHER:PTHR13503 CTD:25920 HOGENOM:HOG000231489 HOVERGEN:HBG052596
OrthoDB:EOG4MGS77 EMBL:AADN02026910 EMBL:AJ719725 IPI:IPI00586715
RefSeq:NP_001006202.1 UniGene:Gga.22254 STRING:Q5ZLK9
Ensembl:ENSGALT00000013905 GeneID:417254 KEGG:gga:417254
InParanoid:Q5ZLK9 NextBio:20820584 Uniprot:Q5ZLK9
Length = 577
Score = 163 (62.4 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 31/81 (38%), Positives = 57/81 (70%)
Query: 90 HGVRRLDFHNSVLEELRDKLVSHIKEIGQKEGR--DRDRKLNEMLKKSFPLVRVKQLRPV 147
HG RL+FH SV +ELR+KL+ + I EG+ +R +KL ++L+KSF LV++ ++PV
Sbjct: 54 HGTPRLEFHQSVFDELREKLLERVSAIAL-EGKVEERYKKLEDLLEKSFSLVKMPSIQPV 112
Query: 148 VMAILRNTTHIDDKYLRVLVS 168
VM ++++ + +K L+++++
Sbjct: 113 VMCVMKHLPKVPEKKLKLVMA 133
Score = 142 (55.0 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 27/62 (43%), Positives = 37/62 (59%)
Query: 2 SGLEESGIPGQNFLREALTSCTDPLKAIEEFQLDNGIXXXXXXXXXXXXXXHGVRRLDFH 61
+GL+E G+ L+E LT+CT+PLKAIE+FQ +NG+ HG RL+FH
Sbjct: 3 AGLQELGVANGEDLKETLTNCTEPLKAIEQFQTENGVLLPSLQSALPFLDLHGTPRLEFH 62
Query: 62 NS 63
S
Sbjct: 63 QS 64
>UNIPROTKB|F1P5D4 [details] [associations]
symbol:COBRA1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0032021 "NELF complex" evidence=IEA] InterPro:IPR010405
Pfam:PF06209 GO:GO:0005737 GO:GO:0045892 GO:GO:0032021
GeneTree:ENSGT00390000012665 OMA:EQLDHRK PANTHER:PTHR13503
EMBL:AADN02026910 IPI:IPI00822151 Ensembl:ENSGALT00000040215
ArrayExpress:F1P5D4 Uniprot:F1P5D4
Length = 584
Score = 163 (62.4 bits), Expect = 1.5e-23, Sum P(2) = 1.5e-23
Identities = 31/81 (38%), Positives = 57/81 (70%)
Query: 90 HGVRRLDFHNSVLEELRDKLVSHIKEIGQKEGR--DRDRKLNEMLKKSFPLVRVKQLRPV 147
HG RL+FH SV +ELR+KL+ + I EG+ +R +KL ++L+KSF LV++ ++PV
Sbjct: 61 HGTPRLEFHQSVFDELREKLLERVSAIAL-EGKVEERYKKLEDLLEKSFSLVKMPSIQPV 119
Query: 148 VMAILRNTTHIDDKYLRVLVS 168
VM ++++ + +K L+++++
Sbjct: 120 VMCVMKHLPKVPEKKLKLVMA 140
Score = 142 (55.0 bits), Expect = 1.5e-23, Sum P(2) = 1.5e-23
Identities = 27/62 (43%), Positives = 37/62 (59%)
Query: 2 SGLEESGIPGQNFLREALTSCTDPLKAIEEFQLDNGIXXXXXXXXXXXXXXHGVRRLDFH 61
+GL+E G+ L+E LT+CT+PLKAIE+FQ +NG+ HG RL+FH
Sbjct: 10 AGLQELGVANGEDLKETLTNCTEPLKAIEQFQTENGVLLPSLQSALPFLDLHGTPRLEFH 69
Query: 62 NS 63
S
Sbjct: 70 QS 71
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.139 0.395 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 168 128 0.00091 102 3 11 22 0.37 31
29 0.41 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 11
No. of states in DFA: 510 (54 KB)
Total size of DFA: 106 KB (2073 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 11.83u 0.10s 11.93t Elapsed: 00:00:29
Total cpu time: 11.83u 0.10s 11.93t Elapsed: 00:00:29
Start: Thu Aug 15 14:07:05 2013 End: Thu Aug 15 14:07:34 2013