RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4196
         (168 letters)



>d1ccwb_ c.1.19.2 (B:) Glutamate mutase, large subunit {Clostridium
           cochlearium [TaxId: 1494]}
          Length = 483

 Score = 27.9 bits (62), Expect = 0.61
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%)

Query: 81  RQMLPLLDLHG-VRRLDFHN-SVLEELRDKLVSHIKEIGQKEGRD 123
            +M+P+ D  G VR L+F N    EE+++     ++E  + EGRD
Sbjct: 416 GKMMPVRDNLGCVRYLEFGNVPFTEEIKNYNRERLQERAKFEGRD 460


>d1inpa_ e.7.1.1 (A:) Inositol polyphosphate 1-phosphatase {Cow (Bos
           taurus), brain [TaxId: 9913]}
          Length = 400

 Score = 26.1 bits (56), Expect = 2.5
 Identities = 19/81 (23%), Positives = 26/81 (32%), Gaps = 1/81 (1%)

Query: 10  PGQNFLREALTSCTDPLKAIEEFQLDNGILLPSLRQMLPLLDLHGVRRLDFHNSVLEVEV 69
                LR       D LK   E   D G+ LP L   +      GV +      ++    
Sbjct: 320 AAHAILRAMGGGMVD-LKECLERNPDTGLDLPQLVYHVGNEGAAGVDQWANKGGLIAYRS 378

Query: 70  TETLNLLLPSLRQMLPLLDLH 90
            + L   L  L Q L  +  H
Sbjct: 379 EKQLETFLSRLLQHLAPVATH 399


>d1hynp_ d.112.1.2 (P:) Erythrocite membrane Band 3 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 293

 Score = 26.0 bits (57), Expect = 2.8
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 75  LLLPSLRQMLPLLDLHGVRRLDFHNSVLEELRDKLVSHIKEIGQKEGRDRDRKLNEMLKK 134
           L   SL ++  +    G   LD   + L  + ++L+       Q   +DR+  L  +L K
Sbjct: 47  LTFWSLLELRRVF-TKGTVLLDLQETSLAGVANQLLDRFIFEDQIRPQDREELLRALLLK 105


>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 394

 Score = 25.5 bits (55), Expect = 3.6
 Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 4/62 (6%)

Query: 62  NSVLEVEVTETLNLLLPSLRQMLPLLDLHGVRRL----DFHNSVLEELRDKLVSHIKEIG 117
               +V + + L +     + +L       + R+          L EL+  L +HI   G
Sbjct: 273 RKCEQVLIEKHLEIFHTEFQNLLDADKNEDLGRMYNLVSRIQDGLGELKKLLETHIHNQG 332

Query: 118 QK 119
             
Sbjct: 333 LA 334


>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
           {Fission yeast (Schizosaccharomyces pombe) [TaxId:
           4896]}
          Length = 344

 Score = 25.2 bits (53), Expect = 4.2
 Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query: 42  SLRQMLPLLDLHGVRRLDFHNSVLEVEVTETLNLLLPSLRQMLPLLDLHGVRRLDFHNSV 101
           ++      L+  G++ L    + +E++   TL  ++      L  L+L+G       N  
Sbjct: 262 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG-------NRF 314

Query: 102 LEELRDKLVSHIKEIGQKEGRDRDRKLNEM 131
            EE  D +V  I+E+    GR    +L++M
Sbjct: 315 SEE--DDVVDEIREVFSTRGRGELDELDDM 342


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.141    0.394 

Gapped
Lambda     K      H
   0.267   0.0567    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 629,040
Number of extensions: 29157
Number of successful extensions: 87
Number of sequences better than 10.0: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 10
Length of query: 168
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 89
Effective length of database: 1,322,926
Effective search space: 117740414
Effective search space used: 117740414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.4 bits)