BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy4197
         (124 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1TMQ|A Chain A, Structure Of Tenebrio Molitor Larval Alpha-Amylase In
           Complex With Ragi Bifunctional Inhibitor
 pdb|1CLV|A Chain A, Yellow Meal Worm Alpha-Amylase In Complex With The
           Amaranth Alpha-Amylase Inhibitor
 pdb|1JAE|A Chain A, Structure Of Tenebrio Molitor Larval Alpha-Amylase
          Length = 471

 Score = 29.6 bits (65), Expect = 0.43,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 2   GVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEY-ISRGYMFRKG 49
           G  D ARP I +  ID+          T  GC ++F++ +S G  F+ G
Sbjct: 210 GFADGARPFIYQEVIDLGGEAISKNEYTGFGCVLEFQFGVSLGNAFQGG 258


>pdb|1VIW|A Chain A, Tenebrio Molitor Alpha-Amylase-Inhibitor Complex
          Length = 471

 Score = 29.6 bits (65), Expect = 0.43,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 2   GVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEY-ISRGYMFRKG 49
           G  D ARP I +  ID+          T  GC ++F++ +S G  F+ G
Sbjct: 210 GFADGARPFIYQEVIDLGGEAISKNEYTGFGCVLEFQFGVSLGNAFQGG 258


>pdb|2WGK|A Chain A, Type Ii Baeyer-Villiger Monooxygenase Oxygenating
           Constituent Of 3,6-Diketocamphane 1,6 Monooxygenase From
           Pseudomonas Putida
 pdb|2WGK|B Chain B, Type Ii Baeyer-Villiger Monooxygenase Oxygenating
           Constituent Of 3,6-Diketocamphane 1,6 Monooxygenase From
           Pseudomonas Putida
          Length = 378

 Score = 28.1 bits (61), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 7/81 (8%)

Query: 43  GYMFRKGRMKILVSKIFKMSQGKPSDSGVEPISQ--SYLVELSILAPGGQDVIGEDMKAF 100
           GY F   R  I + + F M  G   D+G++P+     +LV+ ++   G  D + E + A 
Sbjct: 278 GYCFE--RYLIPIWRRFGMMDGYAKDAGIDPVDADLEFLVD-NVFLVGSPDTVTEKINAL 334

Query: 101 AEQLK--PLVQLEKIDYKRLP 119
            E       +Q+E  DY   P
Sbjct: 335 FEATGGWGTLQVEAHDYYDDP 355


>pdb|3AB6|A Chain A, Crystal Structure Of Nag3 Bound Lysozyme From Meretrix
          Lusoria
 pdb|3AYQ|A Chain A, Crystal Structure Of Inhibitor Bound Lysozyme From
          Meretrix Lusoria
          Length = 122

 Score = 27.3 bits (59), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 8/67 (11%)

Query: 18 VACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMSQGKPSDSGVEPISQS 77
          ++C C +      +GC+MD   +S GY          + + + +  G+P  S     + S
Sbjct: 11 LSCICKMESGCRNVGCKMDMGSLSCGY--------FQIKEAYWIDCGRPGSSWKSCAASS 62

Query: 78 YLVELSI 84
          Y   L +
Sbjct: 63 YCASLCV 69


>pdb|1ZLG|A Chain A, Solution Structure Of The Extracellular Matrix Protein
           Anosmin-1
          Length = 680

 Score = 25.4 bits (54), Expect = 7.8,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 5/48 (10%)

Query: 48  KGRMKILVSKIFKMSQGKPSDSGVEPI-----SQSYLVELSILAPGGQ 90
           + R   L + I   SQ  PSD  V  +     S  Y +E+ +L PGG+
Sbjct: 572 ESRQNSLPNSIISQSQILPSDHYVLTVPNLRPSTLYRLEVQVLTPGGE 619


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.138    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,366,731
Number of Sequences: 62578
Number of extensions: 117850
Number of successful extensions: 288
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 286
Number of HSP's gapped (non-prelim): 6
length of query: 124
length of database: 14,973,337
effective HSP length: 85
effective length of query: 39
effective length of database: 9,654,207
effective search space: 376514073
effective search space used: 376514073
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)