BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4197
(124 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q17IN5|MED18_AEDAE Mediator of RNA polymerase II transcription subunit 18 OS=Aedes
aegypti GN=MED18 PE=3 SV=1
Length = 215
Score = 173 bits (438), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 82/116 (70%), Positives = 98/116 (84%), Gaps = 7/116 (6%)
Query: 3 VGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMS 62
+GD+ RPT+VRSS+D+AC+ VV+FLTEMG R+DFEYI++GYMFRKGRMK+ VSKIFK++
Sbjct: 103 LGDRNRPTLVRSSLDIACTPHVVDFLTEMGFRVDFEYITKGYMFRKGRMKVTVSKIFKVN 162
Query: 63 QGKPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLVQLEKIDYKRL 118
EPISQSYLVELS+LAP GQDVI +DM+ FAEQLKPLVQLEKIDYKR
Sbjct: 163 SS-------EPISQSYLVELSVLAPTGQDVIADDMRIFAEQLKPLVQLEKIDYKRF 211
>sp|Q7QGX9|MED18_ANOGA Mediator of RNA polymerase II transcription subunit 18 OS=Anopheles
gambiae GN=MED18 PE=3 SV=3
Length = 211
Score = 167 bits (423), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 80/116 (68%), Positives = 94/116 (81%), Gaps = 8/116 (6%)
Query: 3 VGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMS 62
+GD+ RPT+VRSS+D+AC+ V++FLTEMG R+DFEY ++GYMFRKGRMKI VSKI K
Sbjct: 100 LGDRTRPTLVRSSLDIACTPHVIDFLTEMGFRLDFEYSTKGYMFRKGRMKITVSKILK-- 157
Query: 63 QGKPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLVQLEKIDYKRL 118
+ EPISQSYLVELS+LAP GQD I EDM+ FAEQLKPLVQLEKIDYKR
Sbjct: 158 ------NMTEPISQSYLVELSVLAPKGQDAIAEDMRIFAEQLKPLVQLEKIDYKRF 207
>sp|Q9XZT1|MED18_DROME Mediator of RNA polymerase II transcription subunit 18
OS=Drosophila melanogaster GN=MED18 PE=1 SV=1
Length = 217
Score = 164 bits (416), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 77/114 (67%), Positives = 95/114 (83%)
Query: 5 DKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMSQG 64
D RPT+VRS +D AC+ ++EFLTEMG R++FEYI++GYMFRKGRMKI VSK+ K+ G
Sbjct: 100 DLRRPTLVRSCMDCACTNGILEFLTEMGFRLEFEYIAKGYMFRKGRMKITVSKLIKIVPG 159
Query: 65 KPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLVQLEKIDYKRL 118
K D EPISQSY+VELS++AP GQ+ +GE+M+ FAEQLKPLVQLEKIDYKRL
Sbjct: 160 KQQDMANEPISQSYIVELSVVAPTGQENVGEEMRVFAEQLKPLVQLEKIDYKRL 213
>sp|Q7T3H7|MED18_DANRE Mediator of RNA polymerase II transcription subunit 18 OS=Danio
rerio GN=med18 PE=2 SV=1
Length = 208
Score = 139 bits (349), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 67/116 (57%), Positives = 91/116 (78%), Gaps = 1/116 (0%)
Query: 3 VGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMS 62
VGDK+R +VR+ +DVA S ++ +FL EMG RMD E++++G +FRKG MK++VSK+ ++
Sbjct: 93 VGDKSRHALVRNCVDVAASHSLPDFLNEMGFRMDHEFVAKGQVFRKGVMKVVVSKLSRVL 152
Query: 63 QGKPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLVQLEKIDYKRL 118
+D+ EP+S SYLVELS+LAP GQD + EDM++FAEQLKPLV LEKID KRL
Sbjct: 153 VPGNTDN-TEPLSLSYLVELSVLAPAGQDTVSEDMRSFAEQLKPLVHLEKIDPKRL 207
>sp|Q9BUE0|MED18_HUMAN Mediator of RNA polymerase II transcription subunit 18 OS=Homo
sapiens GN=MED18 PE=1 SV=1
Length = 208
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/116 (56%), Positives = 89/116 (76%), Gaps = 1/116 (0%)
Query: 3 VGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMS 62
+GDK R +VR+ +D+A S + +FL EMG RMD E++++G++FRKG MKI+V KIF++
Sbjct: 93 MGDKNRHALVRNCVDIATSENLTDFLMEMGFRMDHEFVAKGHLFRKGIMKIMVYKIFRIL 152
Query: 63 QGKPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLVQLEKIDYKRL 118
+DS E +S SYLVELS++AP GQD++ +DMK FAEQLKPLV LEKID KRL
Sbjct: 153 VPGNTDS-TEALSLSYLVELSVVAPAGQDMVSDDMKNFAEQLKPLVHLEKIDPKRL 207
>sp|Q0VCD4|MED18_BOVIN Mediator of RNA polymerase II transcription subunit 18 OS=Bos
taurus GN=MED18 PE=2 SV=1
Length = 208
Score = 136 bits (342), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 65/116 (56%), Positives = 89/116 (76%), Gaps = 1/116 (0%)
Query: 3 VGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMS 62
+GDK R +VR+ +D+A S + +FL EMG RMD E+++RG++FRKG MKI+V KIF++
Sbjct: 93 MGDKNRHALVRNCVDIATSENLTDFLMEMGFRMDHEFVARGHLFRKGIMKIVVYKIFRIL 152
Query: 63 QGKPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLVQLEKIDYKRL 118
+D+ E +S SYLVELS++AP GQD++ +DM+ FAEQLKPLV LEKID KRL
Sbjct: 153 VPGNTDN-TEALSLSYLVELSVVAPAGQDMVSDDMRNFAEQLKPLVHLEKIDPKRL 207
>sp|Q9CZ82|MED18_MOUSE Mediator of RNA polymerase II transcription subunit 18 OS=Mus
musculus GN=Med18 PE=2 SV=1
Length = 208
Score = 135 bits (339), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 64/116 (55%), Positives = 89/116 (76%), Gaps = 1/116 (0%)
Query: 3 VGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMS 62
+GDK R +VR+ +D+A S + +FL EMG RMD E++++G++FRKG MK++V KIF++
Sbjct: 93 MGDKNRHALVRNCVDIATSENLTDFLMEMGFRMDHEFVAKGHLFRKGIMKVVVYKIFRIL 152
Query: 63 QGKPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLVQLEKIDYKRL 118
+DS E +S SYLVELS++AP GQD++ +DM+ FAEQLKPLV LEKID KRL
Sbjct: 153 VPGNTDS-TEALSLSYLVELSVVAPAGQDMVSDDMRNFAEQLKPLVHLEKIDPKRL 207
>sp|Q28GE1|MED18_XENTR Mediator of RNA polymerase II transcription subunit 18 OS=Xenopus
tropicalis GN=med18 PE=2 SV=1
Length = 208
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 64/115 (55%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 4 GDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMSQ 63
GD++R T+VR+ +D+A S + EFL EMG RMD E+++RG++FRKG MK+ V K+F++
Sbjct: 94 GDRSRHTLVRNCVDIATSDVLPEFLQEMGFRMDHEFVARGHLFRKGVMKVAVYKVFRVLV 153
Query: 64 GKPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLVQLEKIDYKRL 118
++ G EP+S SYLVELS +AP GQD I ++++ FAEQL+PLVQLEKID KRL
Sbjct: 154 AGAAE-GAEPLSLSYLVELSAVAPAGQDNIADEVRGFAEQLRPLVQLEKIDPKRL 207
>sp|Q6DD39|MED18_XENLA Mediator of RNA polymerase II transcription subunit 18 OS=Xenopus
laevis GN=med18 PE=2 SV=1
Length = 208
Score = 133 bits (334), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 63/115 (54%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 4 GDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMSQ 63
GD++R T+VR+ +D+A S + EFL EMG RMD E+++RG++FRKG MK+ V K+F++
Sbjct: 94 GDRSRHTLVRNCVDIATSDVLPEFLQEMGFRMDHEFVARGHLFRKGVMKVAVYKVFRVLV 153
Query: 64 GKPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLVQLEKIDYKRL 118
++ G EP+S SYLVELS +AP GQD I ++++ FAEQL+PLVQLEKID KR+
Sbjct: 154 SGAAE-GAEPLSLSYLVELSAVAPAGQDNIADEVRGFAEQLRPLVQLEKIDPKRV 207
>sp|Q966M5|MED18_CAEEL Mediator of RNA polymerase II transcription subunit 18
OS=Caenorhabditis elegans GN=mdt-18 PE=3 SV=1
Length = 232
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 74/126 (58%), Gaps = 6/126 (4%)
Query: 5 DKARPTIVRSSID-VACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMSQ 63
D+ PTIVR I + S ++ + +G RMD+EY+++G ++ KG +KIL S + S+
Sbjct: 105 DQKCPTIVRKEISSLVHSQDMMTYAKSLGLRMDYEYMTQGKLWTKGNIKILHSILTSTSR 164
Query: 64 GKPSDSG-VEPISQSYLVELSILAPGGQDVI--GEDMKAFAEQLKPLVQLEKIDY--KRL 118
DS ++ +S S LVE+SI P + + + ++ FA+QL PLV +EK+DY K
Sbjct: 165 AGTYDSNSIKSVSDSALVEISISLPESAEYMPAAKSLRDFADQLMPLVNMEKVDYWKKMF 224
Query: 119 PLSMAP 124
P AP
Sbjct: 225 PAQAAP 230
>sp|Q61D43|MED18_CAEBR Mediator of RNA polymerase II transcription subunit 18
OS=Caenorhabditis briggsae GN=mdt-18 PE=3 SV=1
Length = 227
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 70/115 (60%), Gaps = 4/115 (3%)
Query: 5 DKARPTIVRSSID-VACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFK-MS 62
D+ PTIVR I + S ++ + +G RMD+EYI++G ++ KG +KIL S + + +
Sbjct: 99 DQKCPTIVRKEISSLVHSQDMMTYAKSLGLRMDYEYITQGKLWTKGNIKILHSTLTRTLR 158
Query: 63 QGKPSDSGVEPISQSYLVELSILAPGGQDVI--GEDMKAFAEQLKPLVQLEKIDY 115
G S ++ +S S LVE+SI P + + + ++ FA+QL PLV +EKIDY
Sbjct: 159 AGTYDSSSLKSMSDSALVEISISLPESAEYMPAAKSLRDFADQLMPLVNMEKIDY 213
>sp|Q54MR3|MED18_DICDI Putative mediator of RNA polymerase II transcription subunit 18
OS=Dictyostelium discoideum GN=med18 PE=3 SV=1
Length = 251
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 8/111 (7%)
Query: 11 IVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMSQGKPSDSG 70
++R+ +D+ S T +L +G D+EY GY + + +F ++ + + G
Sbjct: 126 MIRNVVDIKSSETFFIYLENLGYVKDYEYFVDGYQYSTYNL-----SLFLVNHRRVLNDG 180
Query: 71 V--EPISQSYLVELSILA-PGGQDVIGEDMKAFAEQLKPLVQLEKIDYKRL 118
E +++ +VEL L+ G E + +AE L P V+L K D++ L
Sbjct: 181 TKGELLNKHSMVELQCLSGEEGFVAAAEYLNTYAEYLYPFVELIKFDHRLL 231
>sp|O58413|VORA_PYRHO Ketoisovalerate oxidoreductase subunit VorA OS=Pyrococcus
horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 /
NBRC 100139 / OT-3) GN=vorA PE=3 SV=2
Length = 394
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Query: 58 IFKMSQGKPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLVQLEKID 114
+F ++G ++GV PI + Y+V L GG+D D+KA AE +K +V+ K+D
Sbjct: 333 LFTEAKGALYNTGVRPIMKDYIVGL-----GGRDFTVRDVKAIAEDMKKVVESGKLD 384
>sp|Q9SJZ6|MED18_ARATH Mediator of RNA polymerase II transcription subunit 18
OS=Arabidopsis thaliana GN=MED18 PE=1 SV=1
Length = 219
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 8/117 (6%)
Query: 2 GVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF---RKGRMKILVSKI 58
G G +VR+ I+ S + +G ++D E + G+ F R + + VS +
Sbjct: 78 GAGADQISVLVRNMIESKVSKNALRMFYALGYKLDHELLKVGFAFHFQRTAHISVSVSSV 137
Query: 59 FKMSQGKPSDSGVEPISQSYLVELSILAPGGQDVIGE---DMKAFAEQLKPLVQLEK 112
KM + D V P++ + + + AP + E + +F E L PLV L K
Sbjct: 138 NKMPKVHAIDEAV-PVTPGMQI-VDVTAPATSENYSEVAAAVSSFCEFLAPLVHLSK 192
>sp|Q51801|VORA_PYRFU Ketoisovalerate oxidoreductase subunit VorA OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=vorA
PE=1 SV=1
Length = 394
Score = 37.7 bits (86), Expect = 0.022, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 5/57 (8%)
Query: 58 IFKMSQGKPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLVQLEKID 114
+F S+G +S P+ ++Y+V L GG+DV +D+KA A+ +K +++ K+D
Sbjct: 333 LFTESKGALYNSSAHPLMKNYIVGL-----GGRDVTVKDIKAIADDMKKVIESGKVD 384
>sp|Q9UYZ1|VORA_PYRAB Ketoisovalerate oxidoreductase subunit VorA OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=vorA PE=4 SV=1
Length = 395
Score = 37.4 bits (85), Expect = 0.030, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Query: 58 IFKMSQGKPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLVQLEKID 114
+F ++G ++G PI ++Y+V L GG+D D+KA AE +K +++ K+D
Sbjct: 334 LFTEAKGALYNNGARPIMKNYIVGL-----GGRDFTVSDVKAIAEDMKKVIESGKLD 385
>sp|P98159|NUDEL_DROME Serine protease nudel OS=Drosophila melanogaster GN=ndl PE=1 SV=2
Length = 2616
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 56 SKIFKMSQGKPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAE 102
+K+ MS G+ + G E + S V+ + APGG V GE MKA A+
Sbjct: 677 NKVATMSDGETKEKG-ETFTASPSVQFTSRAPGGFPVSGETMKASAQ 722
>sp|O29165|ACDA1_ARCFU Acetyl-CoA decarbonylase/synthase complex subunit alpha 1
OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 /
DSM 4304 / JCM 9628 / NBRC 100126) GN=cdhA1 PE=3 SV=1
Length = 802
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 2 GVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFE 38
G+ DK++PTIV +V + V ++L EMG DFE
Sbjct: 229 GIVDKSKPTIVVVGHNVMYARPVADYLEEMGRIDDFE 265
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,059,835
Number of Sequences: 539616
Number of extensions: 1537703
Number of successful extensions: 3916
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 3888
Number of HSP's gapped (non-prelim): 20
length of query: 124
length of database: 191,569,459
effective HSP length: 91
effective length of query: 33
effective length of database: 142,464,403
effective search space: 4701325299
effective search space used: 4701325299
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)